Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016600 | sp|Q8VZ17|SUVH6_ARATH | 44.257 | 296 | 115 | 6 | 12 | 271 | 509 | 790 | 2.17e-71 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0016600 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016600 | MtrunA17_Chr7g0232811 | 90.943 | 265 | 20 | 1 | 11 | 271 | 275 | 539 | 1.34e-176 | 497 |
| Msa0016600 | MtrunA17_Chr7g0232841 | 89.474 | 266 | 23 | 2 | 11 | 271 | 263 | 528 | 4.88e-172 | 485 |
| Msa0016600 | MtrunA17_Chr7g0232981 | 78.868 | 265 | 38 | 2 | 11 | 271 | 266 | 516 | 1.02e-139 | 403 |
| Msa0016600 | MtrunA17_Chr7g0232751 | 93.277 | 119 | 8 | 0 | 153 | 271 | 1 | 119 | 1.65e-78 | 233 |
| Msa0016600 | MtrunA17_Chr5g0399801 | 46.000 | 300 | 115 | 5 | 5 | 271 | 804 | 1089 | 1.22e-75 | 249 |
| Msa0016600 | MtrunA17_Chr4g0003511 | 45.918 | 294 | 112 | 5 | 11 | 271 | 773 | 1052 | 3.15e-75 | 247 |
| Msa0016600 | MtrunA17_Chr4g0003501 | 45.918 | 294 | 110 | 5 | 11 | 271 | 678 | 955 | 2.74e-72 | 238 |
| Msa0016600 | MtrunA17_Chr7g0232871 | 90.909 | 110 | 10 | 0 | 62 | 171 | 1 | 110 | 9.79e-67 | 202 |
| Msa0016600 | MtrunA17_Chr1g0170651 | 32.039 | 309 | 126 | 6 | 1 | 271 | 284 | 546 | 3.97e-42 | 151 |
| Msa0016600 | MtrunA17_Chr7g0252211 | 33.887 | 301 | 148 | 8 | 12 | 271 | 467 | 757 | 6.19e-42 | 152 |
| Msa0016600 | MtrunA17_Chr6g0476111 | 34.653 | 303 | 145 | 9 | 11 | 271 | 403 | 694 | 3.55e-41 | 150 |
| Msa0016600 | MtrunA17_Chr6g0476121 | 34.653 | 303 | 145 | 9 | 11 | 271 | 352 | 643 | 6.78e-40 | 146 |
| Msa0016600 | MtrunA17_Chr3g0080761 | 31.333 | 300 | 145 | 9 | 12 | 266 | 376 | 659 | 1.15e-35 | 134 |
| Msa0016600 | MtrunA17_Chr8g0369301 | 30.224 | 268 | 139 | 5 | 7 | 240 | 482 | 735 | 1.23e-33 | 129 |
| Msa0016600 | MtrunA17_Chr8g0354821 | 30.435 | 299 | 146 | 11 | 12 | 266 | 403 | 683 | 2.91e-33 | 127 |
| Msa0016600 | MtrunA17_Chr7g0255181 | 32.313 | 294 | 131 | 11 | 12 | 266 | 436 | 700 | 1.00e-32 | 126 |
| Msa0016600 | MtrunA17_Chr8g0368901 | 29.520 | 271 | 137 | 7 | 8 | 241 | 503 | 756 | 1.07e-32 | 126 |
| Msa0016600 | MtrunA17_Chr8g0368911 | 29.213 | 267 | 141 | 7 | 8 | 240 | 496 | 748 | 1.80e-31 | 122 |
| Msa0016600 | MtrunA17_Chr4g0075321 | 36.000 | 200 | 88 | 5 | 76 | 271 | 901 | 1064 | 2.76e-30 | 119 |
| Msa0016600 | MtrunA17_Chr5g0403241 | 34.848 | 198 | 93 | 5 | 76 | 271 | 1344 | 1507 | 2.75e-29 | 116 |
| Msa0016600 | MtrunA17_Chr1g0163051 | 28.413 | 271 | 144 | 7 | 12 | 247 | 396 | 651 | 8.41e-29 | 115 |
| Msa0016600 | MtrunA17_Chr6g0467401 | 26.766 | 269 | 141 | 8 | 12 | 240 | 310 | 562 | 3.38e-27 | 110 |
| Msa0016600 | MtrunA17_Chr8g0373821 | 34.597 | 211 | 96 | 7 | 61 | 266 | 360 | 533 | 4.29e-27 | 109 |
| Msa0016600 | MtrunA17_Chr3g0094881 | 26.667 | 270 | 140 | 7 | 12 | 240 | 369 | 621 | 8.60e-27 | 109 |
| Msa0016600 | MtrunA17_Chr6g0467421 | 26.766 | 269 | 141 | 8 | 12 | 240 | 310 | 562 | 1.79e-26 | 108 |
| Msa0016600 | MtrunA17_Chr6g0467381 | 27.881 | 269 | 138 | 9 | 12 | 240 | 310 | 562 | 2.00e-26 | 107 |
| Msa0016600 | MtrunA17_Chr6g0467531 | 27.138 | 269 | 140 | 8 | 12 | 240 | 310 | 562 | 2.27e-26 | 107 |
| Msa0016600 | MtrunA17_Chr6g0467411 | 27.407 | 270 | 138 | 10 | 12 | 240 | 228 | 480 | 8.61e-25 | 102 |
| Msa0016600 | MtrunA17_Chr1g0163041 | 27.941 | 272 | 146 | 7 | 12 | 248 | 315 | 571 | 6.63e-23 | 97.8 |
| Msa0016600 | MtrunA17_Chr2g0306961 | 28.994 | 169 | 101 | 4 | 76 | 241 | 310 | 462 | 7.99e-21 | 91.3 |
| Msa0016600 | MtrunA17_Chr1g0190311 | 32.057 | 209 | 109 | 8 | 63 | 269 | 465 | 642 | 1.49e-18 | 85.1 |
| Msa0016600 | MtrunA17_Chr1g0183321 | 30.000 | 210 | 105 | 7 | 63 | 266 | 568 | 741 | 1.15e-16 | 79.7 |
| Msa0016600 | MtrunA17_Chr6g0460921 | 25.581 | 215 | 122 | 9 | 53 | 266 | 238 | 415 | 2.70e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016600 | AT2G22740.2 | 44.257 | 296 | 115 | 6 | 12 | 271 | 509 | 790 | 2.20e-72 | 236 |
| Msa0016600 | AT2G22740.1 | 44.257 | 296 | 115 | 6 | 12 | 271 | 509 | 790 | 2.20e-72 | 236 |
| Msa0016600 | AT2G35160.5 | 43.493 | 292 | 93 | 5 | 12 | 271 | 507 | 758 | 3.83e-72 | 235 |
| Msa0016600 | AT2G35160.2 | 43.493 | 292 | 93 | 5 | 12 | 271 | 543 | 794 | 5.87e-72 | 235 |
| Msa0016600 | AT2G35160.3 | 43.493 | 292 | 93 | 5 | 12 | 271 | 543 | 794 | 5.87e-72 | 235 |
| Msa0016600 | AT2G35160.1 | 43.493 | 292 | 93 | 5 | 12 | 271 | 543 | 794 | 5.87e-72 | 235 |
| Msa0016600 | AT2G35160.4 | 43.493 | 292 | 93 | 5 | 12 | 271 | 543 | 794 | 5.87e-72 | 235 |
| Msa0016600 | AT5G13960.2 | 34.000 | 300 | 150 | 8 | 11 | 271 | 200 | 490 | 3.68e-42 | 150 |
| Msa0016600 | AT5G13960.1 | 34.000 | 300 | 150 | 8 | 11 | 271 | 334 | 624 | 1.30e-41 | 151 |
| Msa0016600 | AT5G04940.2 | 30.537 | 298 | 144 | 11 | 12 | 266 | 388 | 665 | 2.74e-31 | 122 |
| Msa0016600 | AT5G04940.1 | 30.537 | 298 | 144 | 11 | 12 | 266 | 388 | 665 | 2.74e-31 | 122 |
| Msa0016600 | AT1G73100.1 | 29.252 | 294 | 154 | 9 | 12 | 266 | 386 | 664 | 3.18e-30 | 119 |
| Msa0016600 | AT4G13460.1 | 29.434 | 265 | 139 | 5 | 12 | 241 | 386 | 637 | 3.33e-29 | 116 |
| Msa0016600 | AT4G13460.2 | 29.434 | 265 | 139 | 5 | 12 | 241 | 386 | 637 | 3.33e-29 | 116 |
| Msa0016600 | AT2G33290.1 | 26.786 | 280 | 148 | 8 | 12 | 254 | 388 | 647 | 1.93e-25 | 105 |
| Msa0016600 | AT2G33290.3 | 26.786 | 280 | 148 | 8 | 12 | 254 | 388 | 647 | 1.93e-25 | 105 |
| Msa0016600 | AT2G33290.4 | 26.786 | 280 | 148 | 8 | 12 | 254 | 388 | 647 | 1.93e-25 | 105 |
| Msa0016600 | AT2G33290.2 | 26.786 | 280 | 148 | 8 | 12 | 254 | 388 | 647 | 1.93e-25 | 105 |
| Msa0016600 | AT2G23740.1 | 31.414 | 191 | 102 | 4 | 76 | 266 | 1209 | 1370 | 6.32e-23 | 98.6 |
| Msa0016600 | AT2G23740.3 | 31.414 | 191 | 102 | 4 | 76 | 266 | 1216 | 1377 | 6.33e-23 | 98.6 |
| Msa0016600 | AT2G23740.6 | 31.414 | 191 | 102 | 4 | 76 | 266 | 1216 | 1377 | 6.33e-23 | 98.6 |
| Msa0016600 | AT2G23740.2 | 31.414 | 191 | 102 | 4 | 76 | 266 | 1216 | 1377 | 6.33e-23 | 98.6 |
| Msa0016600 | AT2G24740.1 | 27.333 | 300 | 165 | 10 | 1 | 266 | 470 | 750 | 1.44e-21 | 94.4 |
| Msa0016600 | AT1G17770.1 | 30.631 | 222 | 118 | 7 | 58 | 266 | 490 | 688 | 3.01e-21 | 93.6 |
| Msa0016600 | AT3G04380.5 | 32.057 | 209 | 108 | 8 | 63 | 269 | 241 | 417 | 3.60e-19 | 87.0 |
| Msa0016600 | AT3G04380.6 | 32.057 | 209 | 108 | 8 | 63 | 269 | 257 | 433 | 3.93e-19 | 87.0 |
| Msa0016600 | AT3G04380.2 | 32.057 | 209 | 108 | 8 | 63 | 269 | 257 | 433 | 4.16e-19 | 87.0 |
| Msa0016600 | AT3G04380.4 | 32.057 | 209 | 108 | 8 | 63 | 269 | 284 | 460 | 4.38e-19 | 87.0 |
| Msa0016600 | AT3G04380.1 | 32.057 | 209 | 108 | 8 | 63 | 269 | 284 | 460 | 4.76e-19 | 86.7 |
| Msa0016600 | AT3G04380.3 | 32.057 | 209 | 108 | 8 | 63 | 269 | 268 | 444 | 5.36e-19 | 86.7 |
| Msa0016600 | AT3G03750.2 | 28.272 | 191 | 109 | 5 | 76 | 266 | 183 | 345 | 2.30e-14 | 72.4 |
| Msa0016600 | AT1G04050.2 | 27.751 | 209 | 114 | 7 | 63 | 269 | 548 | 721 | 5.58e-14 | 72.0 |
| Msa0016600 | AT1G04050.1 | 27.751 | 209 | 114 | 7 | 63 | 269 | 548 | 721 | 5.58e-14 | 72.0 |
| Msa0016600 | AT1G04050.3 | 27.751 | 209 | 114 | 7 | 63 | 269 | 444 | 617 | 5.84e-14 | 72.0 |
| Msa0016600 | AT1G76710.3 | 31.892 | 185 | 75 | 9 | 85 | 267 | 90 | 225 | 2.24e-13 | 70.1 |
| Msa0016600 | AT1G76710.4 | 31.892 | 185 | 75 | 9 | 85 | 267 | 90 | 225 | 2.47e-13 | 70.1 |
| Msa0016600 | AT1G76710.2 | 31.892 | 185 | 75 | 9 | 85 | 267 | 90 | 225 | 2.69e-13 | 69.7 |
| Msa0016600 | AT1G76710.1 | 31.892 | 185 | 75 | 9 | 85 | 267 | 90 | 225 | 2.69e-13 | 69.7 |
Find 45 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTAGAAATATCTTTAT+AGG | 0.206306 | 1_1:-27568482 | None:intergenic |
| TTTACCACTTGAAGCTTCTA+AGG | 0.221245 | 1_1:-27568947 | None:intergenic |
| GACGAGTATTTATTTAATAT+TGG | 0.249120 | 1_1:+27568844 | Msa0016600:CDS |
| AACATTTCGAGCAAACAAAT+TGG | 0.261209 | 1_1:-27569064 | None:intergenic |
| CGAGTAATGTATTGAAAATA+TGG | 0.296319 | 1_1:-27568556 | None:intergenic |
| TCCTATAAAGATATTTCTAA+TGG | 0.302242 | 1_1:+27568481 | Msa0016600:CDS |
| ACAATTGATGCTGCTAAGTA+TGG | 0.305938 | 1_1:+27569006 | Msa0016600:CDS |
| GAATCTTCGAAAAGCCATTC+AGG | 0.347836 | 1_1:-27568589 | None:intergenic |
| TCAGAGCATGCAATTCCTTC+TGG | 0.348961 | 1_1:+27568754 | Msa0016600:CDS |
| CTCGTAACATTTATCCTGAA+TGG | 0.372209 | 1_1:+27568575 | Msa0016600:CDS |
| AGGTGAGATTATTGAAGATC+AGG | 0.383100 | 1_1:+27568798 | Msa0016600:CDS |
| TTCATATATGGTTGATAGTA+AGG | 0.403159 | 1_1:+27568906 | Msa0016600:CDS |
| ATGGGAAGAGGATTCATATA+TGG | 0.412825 | 1_1:+27568894 | Msa0016600:CDS |
| GTGGTTAATCGTATAGATTC+TGG | 0.413281 | 1_1:+27568526 | Msa0016600:CDS |
| ACAAATTGGGAGAACAACTA+TGG | 0.427505 | 1_1:-27569050 | None:intergenic |
| ACATTTCGAGCAAACAAATT+GGG | 0.449844 | 1_1:-27569063 | None:intergenic |
| ATACGATTAACCACACATAT+AGG | 0.451047 | 1_1:-27568517 | None:intergenic |
| TTCACAAGGTCTATAGTTCA+TGG | 0.458760 | 1_1:+27568875 | Msa0016600:CDS |
| CCCTCCACTCTTAAGAGCAC+AGG | 0.461039 | 1_1:-27568650 | None:intergenic |
| GATCAAGTGATTGATTCAAA+TGG | 0.480841 | 1_1:+27569189 | Msa0016600:CDS |
| CAAGACTAAGGCGAAAGGAT+GGG | 0.513493 | 1_1:+27568723 | Msa0016600:CDS |
| GGTCTATAGTTCATGGGAAG+AGG | 0.525490 | 1_1:+27568882 | Msa0016600:CDS |
| TCAAGACTAAGGCGAAAGGA+TGG | 0.530216 | 1_1:+27568722 | Msa0016600:CDS |
| GCCTGTGCTCTTAAGAGTGG+AGG | 0.530694 | 1_1:+27568649 | Msa0016600:CDS |
| AGAAGCTTCAAGTGGTAAAG+AGG | 0.540440 | 1_1:+27568951 | Msa0016600:CDS |
| AAGACTAAGGCGAAAGGATG+GGG | 0.542189 | 1_1:+27568724 | Msa0016600:CDS |
| TTACCACTTGAAGCTTCTAA+GGG | 0.542917 | 1_1:-27568946 | None:intergenic |
| CTAAGTATGGTAACGTGGCA+AGG | 0.558339 | 1_1:+27569019 | Msa0016600:CDS |
| ATTGATGATCGATGTGATAG+TGG | 0.558469 | 1_1:+27568976 | Msa0016600:CDS |
| ACTATCACATCGATCATCAA+TGG | 0.565161 | 1_1:-27568974 | None:intergenic |
| TTTGCCTGTGCTCTTAAGAG+TGG | 0.575325 | 1_1:+27568646 | Msa0016600:CDS |
| AAGACGAAAGCATGTTATTG+CGG | 0.583822 | 1_1:+27569219 | Msa0016600:CDS |
| CCTGTGCTCTTAAGAGTGGA+GGG | 0.588175 | 1_1:+27568650 | Msa0016600:CDS |
| TCACAAGGTCTATAGTTCAT+GGG | 0.590256 | 1_1:+27568876 | Msa0016600:CDS |
| AAAGTCAGCTCATTCATGCT+CGG | 0.596521 | 1_1:-27569147 | None:intergenic |
| TTTACAATGATGATGATCTG+AGG | 0.599652 | 1_1:+27569088 | Msa0016600:CDS |
| ATGATCGATGTGATAGTGGT+AGG | 0.614728 | 1_1:+27568980 | Msa0016600:CDS |
| TATTGGCAATTATATTCACA+AGG | 0.615507 | 1_1:+27568861 | Msa0016600:CDS |
| AATCTCATCAATACAGTCGA+CGG | 0.622465 | 1_1:-27569257 | None:intergenic |
| TAATCGTATAGATTCTGGCA+AGG | 0.632162 | 1_1:+27568531 | Msa0016600:CDS |
| CAACCCTTAGAAGCTTCAAG+TGG | 0.647600 | 1_1:+27568943 | Msa0016600:CDS |
| AGAACATTTACGCCCAACAG+AGG | 0.655904 | 1_1:-27568611 | None:intergenic |
| AGAAGCTGTTCCTATATGTG+TGG | 0.665038 | 1_1:+27568507 | Msa0016600:CDS |
| GCTGCATATAGCATGATGTG+TGG | 0.717627 | 1_1:-27569114 | None:intergenic |
| TGCTGCTAAGTATGGTAACG+TGG | 0.728265 | 1_1:+27569014 | Msa0016600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTATTTTTGAGTATTT+AGG | + | chr1_1:27568778-27568797 | Msa0016600:CDS | 15.0% |
| !!! | AGTTTTATTTTTGAGTATTT+AGG | + | chr1_1:27568778-27568797 | Msa0016600:CDS | 15.0% |
| !!! | TCCTATAAAGATATTTCTAA+TGG | + | chr1_1:27568481-27568500 | Msa0016600:CDS | 20.0% |
| !! | TCCATTAGAAATATCTTTAT+AGG | - | chr1_1:27568485-27568504 | None:intergenic | 20.0% |
| !! | GACGAGTATTTATTTAATAT+TGG | + | chr1_1:27568844-27568863 | Msa0016600:CDS | 20.0% |
| !!! | TCCTATAAAGATATTTCTAA+TGG | + | chr1_1:27568481-27568500 | Msa0016600:CDS | 20.0% |
| !! | TCCATTAGAAATATCTTTAT+AGG | - | chr1_1:27568485-27568504 | None:intergenic | 20.0% |
| !! | GACGAGTATTTATTTAATAT+TGG | + | chr1_1:27568844-27568863 | Msa0016600:CDS | 20.0% |
| ! | CGAGTAATGTATTGAAAATA+TGG | - | chr1_1:27568559-27568578 | None:intergenic | 25.0% |
| !!! | ATCTCATTTTTCTTTACTCT+AGG | - | chr1_1:27568682-27568701 | None:intergenic | 25.0% |
| ! | TCAAAAATAAAACTTCCAGA+AGG | - | chr1_1:27568772-27568791 | None:intergenic | 25.0% |
| ! | TATTGGCAATTATATTCACA+AGG | + | chr1_1:27568861-27568880 | Msa0016600:CDS | 25.0% |
| !!! | TTCATATATGGTTGATAGTA+AGG | + | chr1_1:27568906-27568925 | Msa0016600:CDS | 25.0% |
| ! | CGAGTAATGTATTGAAAATA+TGG | - | chr1_1:27568559-27568578 | None:intergenic | 25.0% |
| !!! | ATCTCATTTTTCTTTACTCT+AGG | - | chr1_1:27568682-27568701 | None:intergenic | 25.0% |
| ! | TCAAAAATAAAACTTCCAGA+AGG | - | chr1_1:27568772-27568791 | None:intergenic | 25.0% |
| ! | TATTGGCAATTATATTCACA+AGG | + | chr1_1:27568861-27568880 | Msa0016600:CDS | 25.0% |
| !!! | TTCATATATGGTTGATAGTA+AGG | + | chr1_1:27568906-27568925 | Msa0016600:CDS | 25.0% |
| ATACGATTAACCACACATAT+AGG | - | chr1_1:27568520-27568539 | None:intergenic | 30.0% | |
| !! | GCTTCAAATTTTCAAGACTA+AGG | + | chr1_1:27568711-27568730 | Msa0016600:CDS | 30.0% |
| ACATTTCGAGCAAACAAATT+GGG | - | chr1_1:27569066-27569085 | None:intergenic | 30.0% | |
| AACATTTCGAGCAAACAAAT+TGG | - | chr1_1:27569067-27569086 | None:intergenic | 30.0% | |
| ! | TTTACAATGATGATGATCTG+AGG | + | chr1_1:27569088-27569107 | Msa0016600:CDS | 30.0% |
| ! | GATCAAGTGATTGATTCAAA+TGG | + | chr1_1:27569189-27569208 | Msa0016600:CDS | 30.0% |
| ATACGATTAACCACACATAT+AGG | - | chr1_1:27568520-27568539 | None:intergenic | 30.0% | |
| !! | GCTTCAAATTTTCAAGACTA+AGG | + | chr1_1:27568711-27568730 | Msa0016600:CDS | 30.0% |
| ACATTTCGAGCAAACAAATT+GGG | - | chr1_1:27569066-27569085 | None:intergenic | 30.0% | |
| AACATTTCGAGCAAACAAAT+TGG | - | chr1_1:27569067-27569086 | None:intergenic | 30.0% | |
| ! | TTTACAATGATGATGATCTG+AGG | + | chr1_1:27569088-27569107 | Msa0016600:CDS | 30.0% |
| ! | GATCAAGTGATTGATTCAAA+TGG | + | chr1_1:27569189-27569208 | Msa0016600:CDS | 30.0% |
| GTGGTTAATCGTATAGATTC+TGG | + | chr1_1:27568526-27568545 | Msa0016600:CDS | 35.0% | |
| TAATCGTATAGATTCTGGCA+AGG | + | chr1_1:27568531-27568550 | Msa0016600:CDS | 35.0% | |
| CTCGTAACATTTATCCTGAA+TGG | + | chr1_1:27568575-27568594 | Msa0016600:CDS | 35.0% | |
| ! | TTTTCGAAGATTCCTCTGTT+GGG | + | chr1_1:27568599-27568618 | Msa0016600:CDS | 35.0% |
| !! | ATTTTCAAGACTAAGGCGAA+AGG | + | chr1_1:27568718-27568737 | Msa0016600:CDS | 35.0% |
| AGGTGAGATTATTGAAGATC+AGG | + | chr1_1:27568798-27568817 | Msa0016600:CDS | 35.0% | |
| TTCACAAGGTCTATAGTTCA+TGG | + | chr1_1:27568875-27568894 | Msa0016600:CDS | 35.0% | |
| TCACAAGGTCTATAGTTCAT+GGG | + | chr1_1:27568876-27568895 | Msa0016600:CDS | 35.0% | |
| ATGGGAAGAGGATTCATATA+TGG | + | chr1_1:27568894-27568913 | Msa0016600:CDS | 35.0% | |
| TTACCACTTGAAGCTTCTAA+GGG | - | chr1_1:27568949-27568968 | None:intergenic | 35.0% | |
| TTTACCACTTGAAGCTTCTA+AGG | - | chr1_1:27568950-27568969 | None:intergenic | 35.0% | |
| ACTATCACATCGATCATCAA+TGG | - | chr1_1:27568977-27568996 | None:intergenic | 35.0% | |
| ! | ATTGATGATCGATGTGATAG+TGG | + | chr1_1:27568976-27568995 | Msa0016600:CDS | 35.0% |
| ACAATTGATGCTGCTAAGTA+TGG | + | chr1_1:27569006-27569025 | Msa0016600:CDS | 35.0% | |
| ACAAATTGGGAGAACAACTA+TGG | - | chr1_1:27569053-27569072 | None:intergenic | 35.0% | |
| ! | AAGACGAAAGCATGTTATTG+CGG | + | chr1_1:27569219-27569238 | Msa0016600:CDS | 35.0% |
| GTGGTTAATCGTATAGATTC+TGG | + | chr1_1:27568526-27568545 | Msa0016600:CDS | 35.0% | |
| TAATCGTATAGATTCTGGCA+AGG | + | chr1_1:27568531-27568550 | Msa0016600:CDS | 35.0% | |
| CTCGTAACATTTATCCTGAA+TGG | + | chr1_1:27568575-27568594 | Msa0016600:CDS | 35.0% | |
| ! | TTTTCGAAGATTCCTCTGTT+GGG | + | chr1_1:27568599-27568618 | Msa0016600:CDS | 35.0% |
| !! | ATTTTCAAGACTAAGGCGAA+AGG | + | chr1_1:27568718-27568737 | Msa0016600:CDS | 35.0% |
| AGGTGAGATTATTGAAGATC+AGG | + | chr1_1:27568798-27568817 | Msa0016600:CDS | 35.0% | |
| TTCACAAGGTCTATAGTTCA+TGG | + | chr1_1:27568875-27568894 | Msa0016600:CDS | 35.0% | |
| TCACAAGGTCTATAGTTCAT+GGG | + | chr1_1:27568876-27568895 | Msa0016600:CDS | 35.0% | |
| ATGGGAAGAGGATTCATATA+TGG | + | chr1_1:27568894-27568913 | Msa0016600:CDS | 35.0% | |
| TTACCACTTGAAGCTTCTAA+GGG | - | chr1_1:27568949-27568968 | None:intergenic | 35.0% | |
| TTTACCACTTGAAGCTTCTA+AGG | - | chr1_1:27568950-27568969 | None:intergenic | 35.0% | |
| ACTATCACATCGATCATCAA+TGG | - | chr1_1:27568977-27568996 | None:intergenic | 35.0% | |
| ! | ATTGATGATCGATGTGATAG+TGG | + | chr1_1:27568976-27568995 | Msa0016600:CDS | 35.0% |
| ACAATTGATGCTGCTAAGTA+TGG | + | chr1_1:27569006-27569025 | Msa0016600:CDS | 35.0% | |
| ACAAATTGGGAGAACAACTA+TGG | - | chr1_1:27569053-27569072 | None:intergenic | 35.0% | |
| ! | AAGACGAAAGCATGTTATTG+CGG | + | chr1_1:27569219-27569238 | Msa0016600:CDS | 35.0% |
| AGAAGCTGTTCCTATATGTG+TGG | + | chr1_1:27568507-27568526 | Msa0016600:CDS | 40.0% | |
| GAATCTTCGAAAAGCCATTC+AGG | - | chr1_1:27568592-27568611 | None:intergenic | 40.0% | |
| ! | CTTTTCGAAGATTCCTCTGT+TGG | + | chr1_1:27568598-27568617 | Msa0016600:CDS | 40.0% |
| AGAAGCTTCAAGTGGTAAAG+AGG | + | chr1_1:27568951-27568970 | Msa0016600:CDS | 40.0% | |
| !! | ATGATCGATGTGATAGTGGT+AGG | + | chr1_1:27568980-27568999 | Msa0016600:CDS | 40.0% |
| AAAGTCAGCTCATTCATGCT+CGG | - | chr1_1:27569150-27569169 | None:intergenic | 40.0% | |
| AGAAGCTGTTCCTATATGTG+TGG | + | chr1_1:27568507-27568526 | Msa0016600:CDS | 40.0% | |
| GAATCTTCGAAAAGCCATTC+AGG | - | chr1_1:27568592-27568611 | None:intergenic | 40.0% | |
| ! | CTTTTCGAAGATTCCTCTGT+TGG | + | chr1_1:27568598-27568617 | Msa0016600:CDS | 40.0% |
| AGAAGCTTCAAGTGGTAAAG+AGG | + | chr1_1:27568951-27568970 | Msa0016600:CDS | 40.0% | |
| !! | ATGATCGATGTGATAGTGGT+AGG | + | chr1_1:27568980-27568999 | Msa0016600:CDS | 40.0% |
| AAAGTCAGCTCATTCATGCT+CGG | - | chr1_1:27569150-27569169 | None:intergenic | 40.0% | |
| AGAACATTTACGCCCAACAG+AGG | - | chr1_1:27568614-27568633 | None:intergenic | 45.0% | |
| TTTGCCTGTGCTCTTAAGAG+TGG | + | chr1_1:27568646-27568665 | Msa0016600:CDS | 45.0% | |
| TCAAGACTAAGGCGAAAGGA+TGG | + | chr1_1:27568722-27568741 | Msa0016600:CDS | 45.0% | |
| CAAGACTAAGGCGAAAGGAT+GGG | + | chr1_1:27568723-27568742 | Msa0016600:CDS | 45.0% | |
| AAGACTAAGGCGAAAGGATG+GGG | + | chr1_1:27568724-27568743 | Msa0016600:CDS | 45.0% | |
| TCAGAGCATGCAATTCCTTC+TGG | + | chr1_1:27568754-27568773 | Msa0016600:CDS | 45.0% | |
| GGTCTATAGTTCATGGGAAG+AGG | + | chr1_1:27568882-27568901 | Msa0016600:CDS | 45.0% | |
| CAACCCTTAGAAGCTTCAAG+TGG | + | chr1_1:27568943-27568962 | Msa0016600:CDS | 45.0% | |
| ! | TGCTGCTAAGTATGGTAACG+TGG | + | chr1_1:27569014-27569033 | Msa0016600:CDS | 45.0% |
| ! | CTAAGTATGGTAACGTGGCA+AGG | + | chr1_1:27569019-27569038 | Msa0016600:CDS | 45.0% |
| GCTGCATATAGCATGATGTG+TGG | - | chr1_1:27569117-27569136 | None:intergenic | 45.0% | |
| AGAACATTTACGCCCAACAG+AGG | - | chr1_1:27568614-27568633 | None:intergenic | 45.0% | |
| TTTGCCTGTGCTCTTAAGAG+TGG | + | chr1_1:27568646-27568665 | Msa0016600:CDS | 45.0% | |
| TCAAGACTAAGGCGAAAGGA+TGG | + | chr1_1:27568722-27568741 | Msa0016600:CDS | 45.0% | |
| CAAGACTAAGGCGAAAGGAT+GGG | + | chr1_1:27568723-27568742 | Msa0016600:CDS | 45.0% | |
| AAGACTAAGGCGAAAGGATG+GGG | + | chr1_1:27568724-27568743 | Msa0016600:CDS | 45.0% | |
| TCAGAGCATGCAATTCCTTC+TGG | + | chr1_1:27568754-27568773 | Msa0016600:CDS | 45.0% | |
| GGTCTATAGTTCATGGGAAG+AGG | + | chr1_1:27568882-27568901 | Msa0016600:CDS | 45.0% | |
| CAACCCTTAGAAGCTTCAAG+TGG | + | chr1_1:27568943-27568962 | Msa0016600:CDS | 45.0% | |
| ! | TGCTGCTAAGTATGGTAACG+TGG | + | chr1_1:27569014-27569033 | Msa0016600:CDS | 45.0% |
| ! | CTAAGTATGGTAACGTGGCA+AGG | + | chr1_1:27569019-27569038 | Msa0016600:CDS | 45.0% |
| GCTGCATATAGCATGATGTG+TGG | - | chr1_1:27569117-27569136 | None:intergenic | 45.0% | |
| CCTGTGCTCTTAAGAGTGGA+GGG | + | chr1_1:27568650-27568669 | Msa0016600:CDS | 50.0% | |
| CCTGTGCTCTTAAGAGTGGA+GGG | + | chr1_1:27568650-27568669 | Msa0016600:CDS | 50.0% | |
| GCCTGTGCTCTTAAGAGTGG+AGG | + | chr1_1:27568649-27568668 | Msa0016600:CDS | 55.0% | |
| ! | CCCTCCACTCTTAAGAGCAC+AGG | - | chr1_1:27568653-27568672 | None:intergenic | 55.0% |
| GCCTGTGCTCTTAAGAGTGG+AGG | + | chr1_1:27568649-27568668 | Msa0016600:CDS | 55.0% | |
| ! | CCCTCCACTCTTAAGAGCAC+AGG | - | chr1_1:27568653-27568672 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 27568457 | 27569272 | 27568457 | ID=Msa0016600;Name=Msa0016600 |
| chr1_1 | mRNA | 27568457 | 27569272 | 27568457 | ID=Msa0016600-mRNA-1;Parent=Msa0016600;Name=Msa0016600-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|-1|0|1|-1|1|1|0|271 |
| chr1_1 | exon | 27568457 | 27569272 | 27568457 | ID=Msa0016600-mRNA-1:exon:9274;Parent=Msa0016600-mRNA-1 |
| chr1_1 | CDS | 27568457 | 27569272 | 27568457 | ID=Msa0016600-mRNA-1:cds;Parent=Msa0016600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
