Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0016950 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016950 | MtrunA17_Chr5g0399781 | 51.852 | 54 | 25 | 1 | 7 | 60 | 12 | 64 | 7.09e-12 | 60.5 |
| Msa0016950 | MtrunA17_Chr4g0055611 | 66.667 | 36 | 12 | 0 | 7 | 42 | 12 | 47 | 3.71e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 20 sgRNAs with CRISPR-Local
Find 536 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAAGCATTACATAGTAT+TGG | 0.433061 | 1_1:-28062042 | None:intergenic |
| TGGAGATTGGTTTGAAAGCT+CGG | 0.447768 | 1_1:-28062169 | None:intergenic |
| GAAACTAAACTTTGGCGTAA+AGG | 0.456777 | 1_1:+28062006 | Msa0016950:CDS |
| TGCTTGTGGACTACATTTCA+AGG | 0.461822 | 1_1:+28062056 | Msa0016950:CDS |
| GGACTACATTTCAAGGCTAA+AGG | 0.474721 | 1_1:+28062063 | Msa0016950:CDS |
| TCTTCGGAAGATAGTTATCA+AGG | 0.478433 | 1_1:-28062089 | None:intergenic |
| TGTATACCAAGCAATGAGAT+AGG | 0.478624 | 1_1:+28062740 | Msa0016950:CDS |
| ATCAGACCTTGACATTGAAA+AGG | 0.486095 | 1_1:+28062131 | Msa0016950:CDS |
| ATCGATTGTGAAGAATCAAA+TGG | 0.491491 | 1_1:+28062619 | Msa0016950:CDS |
| CATAGTATTGGCTTCTCATA+CGG | 0.492997 | 1_1:-28062030 | None:intergenic |
| GGAGATTGGTTTGAAAGCTC+GGG | 0.493147 | 1_1:-28062168 | None:intergenic |
| CCAAGCAATGAGATAGGCAT+TGG | 0.496933 | 1_1:+28062746 | Msa0016950:CDS |
| ATTTGATTCTTCACAATCGA+TGG | 0.523804 | 1_1:-28062617 | None:intergenic |
| ATGCACACATGGACCCGTCA+TGG | 0.546615 | 1_1:-28060917 | None:intergenic |
| AAATTACAATATTCCATGAC+GGG | 0.550832 | 1_1:+28060904 | None:intergenic |
| CCAATGCCTATCTCATTGCT+TGG | 0.566560 | 1_1:-28062746 | None:intergenic |
| GAGCTTTCAAACCAATCTCC+AGG | 0.568278 | 1_1:+28062171 | Msa0016950:CDS |
| CCAATACTATGTAATGCTTG+TGG | 0.579274 | 1_1:+28062042 | Msa0016950:CDS |
| CTTCGGAAGATAGTTATCAA+GGG | 0.629882 | 1_1:-28062088 | None:intergenic |
| GATTGTGAAGAATCAAATGG+AGG | 0.680011 | 1_1:+28062622 | Msa0016950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+GGG | - | chr1_1:28065095-28065114 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr1_1:28065096-28065115 | None:intergenic | 0.0% |
| !! | TATACTAAAATTTAACAATT+AGG | - | chr1_1:28061346-28061365 | None:intergenic | 10.0% |
| !!! | AAACTGTTTTTTTTTTATAA+AGG | + | chr1_1:28061792-28061811 | Msa0016950:intron | 10.0% |
| !! | ATTAAATATATACCAAAATA+TGG | - | chr1_1:28063796-28063815 | None:intergenic | 10.0% |
| !! | TATATATATATATATATAGG+GGG | - | chr1_1:28065093-28065112 | None:intergenic | 10.0% |
| !!! | TTTGATAATATGTTTATAAT+GGG | - | chr1_1:28065702-28065721 | None:intergenic | 10.0% |
| !!! | TTTTGATAATATGTTTATAA+TGG | - | chr1_1:28065703-28065722 | None:intergenic | 10.0% |
| !!! | TACATGTAAAATATTTTTAT+AGG | + | chr1_1:28066330-28066349 | Msa0016950:intron | 10.0% |
| !!! | ACATGTAAAATATTTTTATA+GGG | + | chr1_1:28066331-28066350 | Msa0016950:intron | 10.0% |
| !!! | TATTTTTATAGGATAAAATA+AGG | - | chr1_1:28066448-28066467 | None:intergenic | 10.0% |
| !!! | GTAGTAATTTTTATTTTTAT+AGG | - | chr1_1:28066459-28066478 | None:intergenic | 10.0% |
| !! | TATACTAAAATTTAACAATT+AGG | - | chr1_1:28061346-28061365 | None:intergenic | 10.0% |
| !!! | AACTGTTTTTTTTTTTATAA+AGG | + | chr1_1:28069506-28069525 | Msa0016950:intron | 10.0% |
| !!! | TTGTGTTTTATTTTTTAGAT+CGG | - | chr1_1:28061068-28061087 | None:intergenic | 15.0% |
| !! | CAAAAAAAACATAGATTTAT+TGG | + | chr1_1:28061085-28061104 | Msa0016950:intron | 15.0% |
| !! | AATATTATTATTTGTGTATG+TGG | - | chr1_1:28061189-28061208 | None:intergenic | 15.0% |
| !!! | TTTTTCATAAAATTGTCATT+TGG | + | chr1_1:28061434-28061453 | Msa0016950:intron | 15.0% |
| !!! | TTTTCCATAAATAATAAGAT+TGG | + | chr1_1:28061751-28061770 | Msa0016950:intron | 15.0% |
| !! | AATACCAATCTTATTATTTA+TGG | - | chr1_1:28061758-28061777 | None:intergenic | 15.0% |
| !! | TTCGTTATTATTAGATAAAA+TGG | + | chr1_1:28061836-28061855 | Msa0016950:intron | 15.0% |
| !! | AATTTGATTGTATCTATTTA+TGG | - | chr1_1:28061891-28061910 | None:intergenic | 15.0% |
| !!! | TGTTTATTTTTAAGTTAACA+TGG | + | chr1_1:28061975-28061994 | Msa0016950:intron | 15.0% |
| !!! | TTTATATTTGTTGAAAAATG+GGG | - | chr1_1:28062231-28062250 | None:intergenic | 15.0% |
| !!! | CTTTATATTTGTTGAAAAAT+GGG | - | chr1_1:28062232-28062251 | None:intergenic | 15.0% |
| !!! | CTTTTAATTTTTTTGTAGAA+AGG | + | chr1_1:28062591-28062610 | Msa0016950:intron | 15.0% |
| !! | CAAAAATTAATGAAATGTTA+TGG | - | chr1_1:28063879-28063898 | None:intergenic | 15.0% |
| !!! | ATTCATCTTATTTTTATTGT+TGG | + | chr1_1:28064825-28064844 | Msa0016950:intron | 15.0% |
| !!! | TTTTTTACTCTTAAGTTTTA+AGG | + | chr1_1:28065467-28065486 | Msa0016950:intron | 15.0% |
| !!! | AAATAATTTTTAATCGAACA+CGG | + | chr1_1:28065543-28065562 | Msa0016950:intron | 15.0% |
| !! | ATATTTAATAGCTAGATATT+TGG | - | chr1_1:28065761-28065780 | None:intergenic | 15.0% |
| !! | ATATTTAACCCTATAAAATA+AGG | - | chr1_1:28065850-28065869 | None:intergenic | 15.0% |
| !! | AGATAAAAATAACAAAAATC+TGG | - | chr1_1:28066105-28066124 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr1_1:28066270-28066289 | Msa0016950:intron | 15.0% |
| !!! | TTAGAAGTTTCAAATTTTAT+AGG | + | chr1_1:28066390-28066409 | Msa0016950:intron | 15.0% |
| !!! | TAGAAGTTTCAAATTTTATA+GGG | + | chr1_1:28066391-28066410 | Msa0016950:intron | 15.0% |
| !! | ATAATATACAAGAGTTTAAA+TGG | + | chr1_1:28066925-28066944 | Msa0016950:intron | 15.0% |
| !! | TTTATCTTTACAAAAACTAA+AGG | - | chr1_1:28067108-28067127 | None:intergenic | 15.0% |
| !! | ATTAATGTACTAAAAAATCA+AGG | + | chr1_1:28067222-28067241 | Msa0016950:intron | 15.0% |
| !!! | TACCATAAAAATTGTATTTT+TGG | - | chr1_1:28067907-28067926 | None:intergenic | 15.0% |
| !!! | TTGTGTTTTATTTTTTAGAT+CGG | - | chr1_1:28061068-28061087 | None:intergenic | 15.0% |
| !! | ACAAAAAAACATAGATTTAT+TGG | + | chr1_1:28068801-28068820 | Msa0016950:intron | 15.0% |
| !! | AATATTATTATTTGTGTATG+TGG | - | chr1_1:28061189-28061208 | None:intergenic | 15.0% |
| !!! | TTTTTCATAAAATTGTCATT+TGG | + | chr1_1:28061434-28061453 | Msa0016950:intron | 15.0% |
| !! | TTCGTTATTATTAGATAAAA+TGG | + | chr1_1:28061836-28061855 | Msa0016950:intron | 15.0% |
| !! | ATAGATTTATTGGATCTATT+TGG | + | chr1_1:28061095-28061114 | Msa0016950:intron | 20.0% |
| !! | CTAAAATTTAACAATTAGGA+AGG | - | chr1_1:28061342-28061361 | None:intergenic | 20.0% |
| !! | TAAAGACACAATAAAATCAT+AGG | - | chr1_1:28061393-28061412 | None:intergenic | 20.0% |
| !! | TCATTTGGATATCTAAAAAT+CGG | + | chr1_1:28061449-28061468 | Msa0016950:intron | 20.0% |
| !!! | TTTTCAAATGTCAACATAAT+TGG | + | chr1_1:28061685-28061704 | Msa0016950:intron | 20.0% |
| !! | TTTCAAATGTCAACATAATT+GGG | + | chr1_1:28061686-28061705 | Msa0016950:intron | 20.0% |
| !!! | TTATTGCATTTTTTATTACC+TGG | - | chr1_1:28062192-28062211 | None:intergenic | 20.0% |
| !!! | GCTTTATATTTGTTGAAAAA+TGG | - | chr1_1:28062233-28062252 | None:intergenic | 20.0% |
| !!! | ATTGTAAGAATTTTCTTAAG+AGG | + | chr1_1:28062286-28062305 | Msa0016950:intron | 20.0% |
| !! | AACACTACTATTTATATATG+AGG | + | chr1_1:28062337-28062356 | Msa0016950:intron | 20.0% |
| !!! | TTTTGAATGAATTGTATTGA+TGG | + | chr1_1:28062429-28062448 | Msa0016950:intron | 20.0% |
| !!! | TTTGAATGAATTGTATTGAT+GGG | + | chr1_1:28062430-28062449 | Msa0016950:intron | 20.0% |
| !! | TTATATGTATACATCATACA+CGG | - | chr1_1:28062570-28062589 | None:intergenic | 20.0% |
| !!! | ATATGTTTAGAGAATGATTT+TGG | + | chr1_1:28063051-28063070 | Msa0016950:intron | 20.0% |
| !!! | ACATCTTAATAACTTGTTAT+AGG | + | chr1_1:28063134-28063153 | Msa0016950:intron | 20.0% |
| !! | AATATTTACTCATACATCTT+TGG | + | chr1_1:28063282-28063301 | Msa0016950:intron | 20.0% |
| !!! | GAACAAAAATTTTGTGTATT+GGG | + | chr1_1:28064008-28064027 | Msa0016950:intron | 20.0% |
| !!! | TCTGTTTATCTTTTATGTTA+AGG | + | chr1_1:28064763-28064782 | Msa0016950:intron | 20.0% |
| !!! | AACCATTCTTTTTAATCTAA+TGG | + | chr1_1:28065014-28065033 | Msa0016950:intron | 20.0% |
| !! | AACCATTAGATTAAAAAGAA+TGG | - | chr1_1:28064275-28064294 | None:intergenic | 20.0% |
| !!! | AAGTTTTAAGGAAAAAGAAT+TGG | + | chr1_1:28065479-28065498 | Msa0016950:intron | 20.0% |
| !!! | TTAAGATGCCTTATTTTATA+GGG | + | chr1_1:28065839-28065858 | Msa0016950:intron | 20.0% |
| !!! | TAAAAGGTCTCAATTTTATA+AGG | - | chr1_1:28065882-28065901 | None:intergenic | 20.0% |
| !! | AAGTAAAGACTAAACTTAAA+AGG | - | chr1_1:28065898-28065917 | None:intergenic | 20.0% |
| !!! | ATTTTGTGTACGTTAAATTT+GGG | - | chr1_1:28066498-28066517 | None:intergenic | 20.0% |
| !!! | AATTTTGTGTACGTTAAATT+TGG | - | chr1_1:28066499-28066518 | None:intergenic | 20.0% |
| !! | ATAACATTATGAAAAGAAGA+TGG | + | chr1_1:28066538-28066557 | Msa0016950:intron | 20.0% |
| !!! | TCAATTCTAAAAATTGTGAT+TGG | + | chr1_1:28066818-28066837 | Msa0016950:intron | 20.0% |
| !!! | CAATTCTAAAAATTGTGATT+GGG | + | chr1_1:28066819-28066838 | Msa0016950:intron | 20.0% |
| !!! | GGTAAATTTGTTTAATGAAA+GGG | + | chr1_1:28067461-28067480 | Msa0016950:intron | 20.0% |
| !!! | GTTTTAATTCAAAAACGTTA+GGG | - | chr1_1:28067780-28067799 | None:intergenic | 20.0% |
| !!! | AGTTTTAATTCAAAAACGTT+AGG | - | chr1_1:28067781-28067800 | None:intergenic | 20.0% |
| !! | CTATTTAATTAATATCGCTT+TGG | - | chr1_1:28067876-28067895 | None:intergenic | 20.0% |
| !!! | GACCAAAAATACAATTTTTA+TGG | + | chr1_1:28067902-28067921 | Msa0016950:intron | 20.0% |
| !!! | TCAACATTTAGATTTTAGAT+AGG | + | chr1_1:28068023-28068042 | Msa0016950:intron | 20.0% |
| !!! | CAACATTTAGATTTTAGATA+GGG | + | chr1_1:28068024-28068043 | Msa0016950:intron | 20.0% |
| !!! | AACATTTAGATTTTAGATAG+GGG | + | chr1_1:28068025-28068044 | Msa0016950:intron | 20.0% |
| !!! | GTCTTCACTTTTTTTTTTTT+TGG | - | chr1_1:28068214-28068233 | None:intergenic | 20.0% |
| !! | ATAGATTTATTGGATCTATT+TGG | + | chr1_1:28061095-28061114 | Msa0016950:intron | 20.0% |
| !! | CTAAAATTTAACAATTAGGA+AGG | - | chr1_1:28061342-28061361 | None:intergenic | 20.0% |
| !! | TCATTTGGATATCTAAAAAT+CGG | + | chr1_1:28061449-28061468 | Msa0016950:intron | 20.0% |
| !!! | TTTTCAAATGTCAACATAAT+TGG | + | chr1_1:28061685-28061704 | Msa0016950:intron | 20.0% |
| !! | TTTCAAATGTCAACATAATT+GGG | + | chr1_1:28061686-28061705 | Msa0016950:intron | 20.0% |
| !!! | TTTTCCTTAACTAATAAGAT+TGG | + | chr1_1:28069464-28069483 | Msa0016950:intron | 20.0% |
| !! | AATACCAATCTTATTAGTTA+AGG | - | chr1_1:28069471-28069490 | None:intergenic | 20.0% |
| !! | AATTTGATTGTATCTATTTG+TGG | - | chr1_1:28069605-28069624 | None:intergenic | 20.0% |
| !!! | TGTTTTAATTTAGACCAGTT+TGG | - | chr1_1:28061040-28061059 | None:intergenic | 25.0% |
| !!! | GTTTTATTTTTTAGATCGGT+TGG | - | chr1_1:28061064-28061083 | None:intergenic | 25.0% |
| !!! | GTTCAGTTTGATTTTGAAAA+AGG | - | chr1_1:28061167-28061186 | None:intergenic | 25.0% |
| ! | AGATAAAACAAAATACAAGG+TGG | - | chr1_1:28061624-28061643 | None:intergenic | 25.0% |
| ! | CGTAGATAAAACAAAATACA+AGG | - | chr1_1:28061627-28061646 | None:intergenic | 25.0% |
| ! | TATCTACGTTGTCTATTTAT+TGG | + | chr1_1:28061639-28061658 | Msa0016950:intron | 25.0% |
| ! | ACATTTGAAAATAACCACTA+TGG | - | chr1_1:28061676-28061695 | None:intergenic | 25.0% |
| ! | TGATTGTATCTATTTATGGT+TGG | - | chr1_1:28061887-28061906 | None:intergenic | 25.0% |
| !! | TTTTGACAGAAACTAAACTT+TGG | + | chr1_1:28061998-28062017 | Msa0016950:CDS | 25.0% |
| !!! | ATTTTTTATTACCTGGAGAT+TGG | - | chr1_1:28062185-28062204 | None:intergenic | 25.0% |
| !! | TTTCTTAAGAGGTACAATTT+AGG | + | chr1_1:28062297-28062316 | Msa0016950:intron | 25.0% |
| ! | ATTGACAATGAAAGGAATTA+GGG | - | chr1_1:28062376-28062395 | None:intergenic | 25.0% |
| ! | TATTGACAATGAAAGGAATT+AGG | - | chr1_1:28062377-28062396 | None:intergenic | 25.0% |
| !! | TTGAATGAATTGTATTGATG+GGG | + | chr1_1:28062431-28062450 | Msa0016950:intron | 25.0% |
| ! | TATCCATAAATGTATGAATG+TGG | - | chr1_1:28062479-28062498 | None:intergenic | 25.0% |
| ! | TTATCTCTTAAACTTTCGAT+TGG | + | chr1_1:28062939-28062958 | Msa0016950:intron | 25.0% |
| ! | TCTAAACATATCTCTAAGTT+GGG | - | chr1_1:28063042-28063061 | None:intergenic | 25.0% |
| !!! | AAGATGTTTTGAAATGTGAT+AGG | - | chr1_1:28063121-28063140 | None:intergenic | 25.0% |
| !!! | TAATAACTTGTTATAGGTAC+AGG | + | chr1_1:28063140-28063159 | Msa0016950:intron | 25.0% |
| !!! | AATAACTTGTTATAGGTACA+GGG | + | chr1_1:28063141-28063160 | Msa0016950:intron | 25.0% |
| ! | GCAAGATTTATTATGTATCA+GGG | - | chr1_1:28063258-28063277 | None:intergenic | 25.0% |
| ! | GATGTATGAGTAAATATTAG+TGG | - | chr1_1:28063280-28063299 | None:intergenic | 25.0% |
| ! | AAACCAGTTAAACCATATAT+CGG | - | chr1_1:28063342-28063361 | None:intergenic | 25.0% |
| ! | AGAAAGAGAAACTTTGAATT+AGG | - | chr1_1:28063518-28063537 | None:intergenic | 25.0% |
| ! | ACTCAACAATATTTAAGGAT+TGG | - | chr1_1:28063620-28063639 | None:intergenic | 25.0% |
| ! | AAGAGACTCAACAATATTTA+AGG | - | chr1_1:28063625-28063644 | None:intergenic | 25.0% |
| ! | CATAAACACCCAAAATATTA+TGG | - | chr1_1:28063988-28064007 | None:intergenic | 25.0% |
| !!! | CATAATATTTTGGGTGTTTA+TGG | + | chr1_1:28063986-28064005 | Msa0016950:intron | 25.0% |
| !! | GGAACAAAAATTTTGTGTAT+TGG | + | chr1_1:28064007-28064026 | Msa0016950:intron | 25.0% |
| ! | TAAACATACAATAGAGACTA+AGG | + | chr1_1:28064113-28064132 | Msa0016950:intron | 25.0% |
| !! | AGTTTGGGATGAAAATAAAT+AGG | + | chr1_1:28064252-28064271 | Msa0016950:intron | 25.0% |
| !! | CAGCATTCTTTTTAATCTAA+TGG | - | chr1_1:28064280-28064299 | None:intergenic | 25.0% |
| ! | ACCATATATGAATGATTTGA+AGG | + | chr1_1:28064585-28064604 | Msa0016950:intron | 25.0% |
| ! | TCCTTCAAATCATTCATATA+TGG | - | chr1_1:28064589-28064608 | None:intergenic | 25.0% |
| ! | AAAATCCAACGTGATATATA+TGG | + | chr1_1:28064656-28064675 | Msa0016950:intron | 25.0% |
| !! | AGGTTTATCACAACAATTTT+AGG | + | chr1_1:28064783-28064802 | Msa0016950:intron | 25.0% |
| !!! | CTTATTTTTATTGTTGGAAC+TGG | + | chr1_1:28064831-28064850 | Msa0016950:intron | 25.0% |
| ! | CACATTAAAAAAGGTTGTAT+TGG | + | chr1_1:28065159-28065178 | Msa0016950:intron | 25.0% |
| ! | TGTTTATGTATTTGTGTAAG+TGG | + | chr1_1:28065626-28065645 | Msa0016950:intron | 25.0% |
| !!! | GTTAAGATGCCTTATTTTAT+AGG | + | chr1_1:28065838-28065857 | Msa0016950:intron | 25.0% |
| !!! | TTAGAGAAACTTTGTTTTAG+TGG | + | chr1_1:28066297-28066316 | Msa0016950:intron | 25.0% |
| !!! | TAGAGAAACTTTGTTTTAGT+GGG | + | chr1_1:28066298-28066317 | Msa0016950:intron | 25.0% |
| ! | AATTTGGGTCTATTAAAGAT+AGG | - | chr1_1:28066483-28066502 | None:intergenic | 25.0% |
| !!! | AAAAAAAAGCACTCTTTCAA+AGG | + | chr1_1:28066643-28066662 | Msa0016950:intron | 25.0% |
| !!! | AAAAAAAGCACTCTTTCAAA+GGG | + | chr1_1:28066644-28066663 | Msa0016950:intron | 25.0% |
| !!! | ATCATCCTACATATTAGTTT+TGG | + | chr1_1:28066677-28066696 | Msa0016950:intron | 25.0% |
| !!! | TCATCCTACATATTAGTTTT+GGG | + | chr1_1:28066678-28066697 | Msa0016950:intron | 25.0% |
| ! | AAATACAAAGTTTATGAGCA+GGG | - | chr1_1:28066742-28066761 | None:intergenic | 25.0% |
| ! | ACTTTGTATTTCAAATGAAG+TGG | + | chr1_1:28066766-28066785 | Msa0016950:intron | 25.0% |
| ! | CTTTGTATTTCAAATGAAGT+GGG | + | chr1_1:28066767-28066786 | Msa0016950:intron | 25.0% |
| !! | TTATGCTGATACAAATTTTC+AGG | - | chr1_1:28066998-28067017 | None:intergenic | 25.0% |
| ! | TTGTATCAGCATAAATTGTT+AGG | + | chr1_1:28067004-28067023 | Msa0016950:intron | 25.0% |
| ! | TTGTACAAATTCTAATAAGC+TGG | + | chr1_1:28067155-28067174 | Msa0016950:intron | 25.0% |
| ! | AATGTACTAAAAAATCAAGG+AGG | + | chr1_1:28067225-28067244 | Msa0016950:intron | 25.0% |
| !! | GGGTAAATTTGTTTAATGAA+AGG | + | chr1_1:28067460-28067479 | Msa0016950:intron | 25.0% |
| !! | AAATTTGTTTAATGAAAGGG+TGG | + | chr1_1:28067464-28067483 | Msa0016950:intron | 25.0% |
| ! | TTTGTGTCAAAAGATGAAAA+TGG | + | chr1_1:28067585-28067604 | Msa0016950:intron | 25.0% |
| !!! | TCGTGGAGATTTTTTTTTTT+TGG | + | chr1_1:28067612-28067631 | Msa0016950:intron | 25.0% |
| !!! | CGTGGAGATTTTTTTTTTTT+GGG | + | chr1_1:28067613-28067632 | Msa0016950:intron | 25.0% |
| !!! | GTGGAGATTTTTTTTTTTTG+GGG | + | chr1_1:28067614-28067633 | Msa0016950:intron | 25.0% |
| !!! | TGGAGATTTTTTTTTTTTGG+GGG | + | chr1_1:28067615-28067634 | Msa0016950:intron | 25.0% |
| !!! | TTGCATATATGGTTGTTTTT+GGG | + | chr1_1:28067688-28067707 | Msa0016950:intron | 25.0% |
| ! | TAAATGACCAAAATGTGTAA+CGG | + | chr1_1:28067805-28067824 | Msa0016950:intron | 25.0% |
| !! | CATTGTCATTTATATTCACA+TGG | - | chr1_1:28067967-28067986 | None:intergenic | 25.0% |
| ! | AACCAAAAAAAATAGACGTA+TGG | + | chr1_1:28068344-28068363 | Msa0016950:intron | 25.0% |
| !!! | TACCATACGTCTATTTTTTT+TGG | - | chr1_1:28068349-28068368 | None:intergenic | 25.0% |
| !!! | CTTTCTTTTTGGTTTTCTAT+AGG | + | chr1_1:28068431-28068450 | Msa0016950:intron | 25.0% |
| ! | TTGAACAAGATTACTTTCAA+CGG | - | chr1_1:28068463-28068482 | None:intergenic | 25.0% |
| ! | ACATGGTCAAAGAATAAATA+CGG | + | chr1_1:28068484-28068503 | Msa0016950:intron | 25.0% |
| ! | CAAATTACAATATTCCATGA+CGG | + | chr1_1:28068620-28068639 | Msa0016950:intron | 25.0% |
| ! | AAATTACAATATTCCATGAC+GGG | + | chr1_1:28068621-28068640 | Msa0016950:intron | 25.0% |
| !!! | TGTTTTAATTTAGACCAGTT+TGG | - | chr1_1:28061040-28061059 | None:intergenic | 25.0% |
| !!! | GTTTTATTTTTTAGATCGGT+TGG | - | chr1_1:28061064-28061083 | None:intergenic | 25.0% |
| !!! | GTTCAGTTTGATTTTGAAAA+AGG | - | chr1_1:28061167-28061186 | None:intergenic | 25.0% |
| ! | TAAAGACACAGTAAAATCAT+AGG | - | chr1_1:28069109-28069128 | None:intergenic | 25.0% |
| ! | AGATAAAACAAAATACAAGG+TGG | - | chr1_1:28061624-28061643 | None:intergenic | 25.0% |
| ! | CGTAGATAAAACAAAATACA+AGG | - | chr1_1:28061627-28061646 | None:intergenic | 25.0% |
| ! | TATCTACGTTGTCTATTTAT+TGG | + | chr1_1:28061639-28061658 | Msa0016950:intron | 25.0% |
| ! | ACATTTGAAAATAACCACTA+TGG | - | chr1_1:28061676-28061695 | None:intergenic | 25.0% |
| GGGAAATCATATTCAAAGTA+GGG | + | chr1_1:28061004-28061023 | Msa0016950:intron | 30.0% | |
| ! | ACCACGAGTATTTCAATTTT+TGG | + | chr1_1:28061540-28061559 | Msa0016950:intron | 30.0% |
| TCCAAAAATTGAAATACTCG+TGG | - | chr1_1:28061544-28061563 | None:intergenic | 30.0% | |
| AACTGATCTAAATCATACCA+TGG | + | chr1_1:28061585-28061604 | Msa0016950:intron | 30.0% | |
| ACTGATCTAAATCATACCAT+GGG | + | chr1_1:28061586-28061605 | Msa0016950:intron | 30.0% | |
| GTTGTCTATTTATTGGAAAC+TGG | + | chr1_1:28061646-28061665 | Msa0016950:intron | 30.0% | |
| ! | GTATCTATTTATGGTTGGTT+AGG | - | chr1_1:28061882-28061901 | None:intergenic | 30.0% |
| ATGAGACTCACATTAAAAAC+TGG | - | chr1_1:28061936-28061955 | None:intergenic | 30.0% | |
| ATGCTCTTATTGACAATGAA+AGG | - | chr1_1:28062384-28062403 | None:intergenic | 30.0% | |
| ACTCCACATTCATACATTTA+TGG | + | chr1_1:28062473-28062492 | Msa0016950:intron | 30.0% | |
| ATTTGATTCTTCACAATCGA+TGG | - | chr1_1:28062620-28062639 | None:intergenic | 30.0% | |
| ATCGATTGTGAAGAATCAAA+TGG | + | chr1_1:28062619-28062638 | Msa0016950:CDS | 30.0% | |
| CTCTAAACATATCTCTAAGT+TGG | - | chr1_1:28063043-28063062 | None:intergenic | 30.0% | |
| ! | TGTTTAGAGAATGATTTTGG+TGG | + | chr1_1:28063054-28063073 | Msa0016950:intron | 30.0% |
| !! | ATAACTTGTTATAGGTACAG+GGG | + | chr1_1:28063142-28063161 | Msa0016950:intron | 30.0% |
| GGCAAGATTTATTATGTATC+AGG | - | chr1_1:28063259-28063278 | None:intergenic | 30.0% | |
| ! | TCTTGTCTTATTCCGATATA+TGG | + | chr1_1:28063327-28063346 | Msa0016950:intron | 30.0% |
| ATTCCGATATATGGTTTAAC+TGG | + | chr1_1:28063336-28063355 | Msa0016950:intron | 30.0% | |
| AATTAGTACGCTCTTAGAAA+TGG | - | chr1_1:28063474-28063493 | None:intergenic | 30.0% | |
| GGAATTCATAATACAGTTGA+TGG | - | chr1_1:28063497-28063516 | None:intergenic | 30.0% | |
| AGGAAATGTTGAGATTAAGA+CGG | - | chr1_1:28063703-28063722 | None:intergenic | 30.0% | |
| ! | TTGAGTACTTCTCCATATTT+TGG | + | chr1_1:28063781-28063800 | Msa0016950:intron | 30.0% |
| TAGATTGCGATAGATGATAT+TGG | - | chr1_1:28063950-28063969 | None:intergenic | 30.0% | |
| ! | ATGGTTAGGCCATAATATTT+TGG | + | chr1_1:28063976-28063995 | Msa0016950:intron | 30.0% |
| ! | TGGTTAGGCCATAATATTTT+GGG | + | chr1_1:28063977-28063996 | Msa0016950:intron | 30.0% |
| CATGAGTTGCATATTGAATA+GGG | - | chr1_1:28064065-28064084 | None:intergenic | 30.0% | |
| TCATGAGTTGCATATTGAAT+AGG | - | chr1_1:28064066-28064085 | None:intergenic | 30.0% | |
| ACTAATATCCATGTGAGTTT+GGG | + | chr1_1:28064237-28064256 | Msa0016950:intron | 30.0% | |
| ! | GTATGATTTGCAACTCATTT+GGG | - | chr1_1:28064567-28064586 | None:intergenic | 30.0% |
| GAATGATTTGAAGGATGAAT+TGG | + | chr1_1:28064594-28064613 | Msa0016950:intron | 30.0% | |
| ATCTTCCATATATATCACGT+TGG | - | chr1_1:28064664-28064683 | None:intergenic | 30.0% | |
| AAATTGGAATTCTTACTGCT+TGG | - | chr1_1:28064711-28064730 | None:intergenic | 30.0% | |
| !! | TTTATTGTTGGAACTGGTTT+TGG | + | chr1_1:28064837-28064856 | Msa0016950:intron | 30.0% |
| ACACACACACACATTAAAAA+AGG | + | chr1_1:28065150-28065169 | Msa0016950:intron | 30.0% | |
| ATTGAACAAGCTTAGATAGA+AGG | + | chr1_1:28065196-28065215 | Msa0016950:intron | 30.0% | |
| !! | AGCCAGAAAAATTTGTTGAA+GGG | + | chr1_1:28065335-28065354 | Msa0016950:intron | 30.0% |
| ATGACTCTACAAGTAATACA+CGG | - | chr1_1:28065373-28065392 | None:intergenic | 30.0% | |
| ! | GGAAAAAGAATTGGTAATCT+AGG | + | chr1_1:28065488-28065507 | Msa0016950:intron | 30.0% |
| ! | AGAATTGGTAATCTAGGAAT+CGG | + | chr1_1:28065494-28065513 | Msa0016950:intron | 30.0% |
| ! | TGAGTGCAGAAATTTTCTAT+GGG | - | chr1_1:28065943-28065962 | None:intergenic | 30.0% |
| ! | CAAGTTTAGAACATTCCAAA+AGG | - | chr1_1:28066237-28066256 | None:intergenic | 30.0% |
| !!! | AGAGAAACTTTGTTTTAGTG+GGG | + | chr1_1:28066299-28066318 | Msa0016950:intron | 30.0% |
| !! | AAAAAAGCACTCTTTCAAAG+GGG | + | chr1_1:28066645-28066664 | Msa0016950:intron | 30.0% |
| !!! | CATCCTACATATTAGTTTTG+GGG | + | chr1_1:28066679-28066698 | Msa0016950:intron | 30.0% |
| !!! | ATCCTACATATTAGTTTTGG+GGG | + | chr1_1:28066680-28066699 | Msa0016950:intron | 30.0% |
| AACTACCTATAGTAGTTTAG+GGG | - | chr1_1:28066715-28066734 | None:intergenic | 30.0% | |
| GAACTACCTATAGTAGTTTA+GGG | - | chr1_1:28066716-28066735 | None:intergenic | 30.0% | |
| GAAATACAAAGTTTATGAGC+AGG | - | chr1_1:28066743-28066762 | None:intergenic | 30.0% | |
| AATTGTGATTGGGTTTAGTT+TGG | + | chr1_1:28066829-28066848 | Msa0016950:intron | 30.0% | |
| CTAAAAAATCAAGGAGGATT+AGG | + | chr1_1:28067231-28067250 | Msa0016950:intron | 30.0% | |
| !! | TTAGCCTTTTAACGAAATAG+AGG | + | chr1_1:28067280-28067299 | Msa0016950:intron | 30.0% |
| ! | TTTAAAATGAGAACCCTTTG+TGG | + | chr1_1:28067313-28067332 | Msa0016950:intron | 30.0% |
| CACAAAATTGAAATGAACCT+TGG | - | chr1_1:28067571-28067590 | None:intergenic | 30.0% | |
| !!! | GGAGATTTTTTTTTTTTGGG+GGG | + | chr1_1:28067616-28067635 | Msa0016950:intron | 30.0% |
| !!! | GAGATTTTTTTTTTTTGGGG+GGG | + | chr1_1:28067617-28067636 | Msa0016950:intron | 30.0% |
| !!! | AGATTTTTTTTTTTTGGGGG+GGG | + | chr1_1:28067618-28067637 | Msa0016950:intron | 30.0% |
| !! | CTTGCATATATGGTTGTTTT+TGG | + | chr1_1:28067687-28067706 | Msa0016950:intron | 30.0% |
| !!! | TTTGGGATTTTTGTTGTTGA+AGG | + | chr1_1:28067705-28067724 | Msa0016950:intron | 30.0% |
| !!! | TTTTTGTTGTTGAAGGTTGA+TGG | + | chr1_1:28067712-28067731 | Msa0016950:intron | 30.0% |
| !! | AGGAAGCAGCTTTAAATATT+TGG | - | chr1_1:28068253-28068272 | None:intergenic | 30.0% |
| ! | ATGTCTAGATACAGTTTTCA+AGG | - | chr1_1:28068273-28068292 | None:intergenic | 30.0% |
| ! | AAATAGACGTATGGTACTTT+TGG | + | chr1_1:28068353-28068372 | Msa0016950:intron | 30.0% |
| ! | TGATCACATAGCTTTCTTTT+TGG | + | chr1_1:28068420-28068439 | Msa0016950:intron | 30.0% |
| AAGTAATCTTGTTCAAGACA+TGG | + | chr1_1:28068467-28068486 | Msa0016950:intron | 30.0% | |
| AAACCTAAAGCTTGGTTTAT+CGG | + | chr1_1:28068522-28068541 | Msa0016950:intron | 30.0% | |
| GGGAAATCATATTCAAAGTA+GGG | + | chr1_1:28061004-28061023 | Msa0016950:intron | 30.0% | |
| ! | ACCACGAGTATTTCAATTTT+TGG | + | chr1_1:28061540-28061559 | Msa0016950:intron | 30.0% |
| TCCAAAAATTGAAATACTCG+TGG | - | chr1_1:28061544-28061563 | None:intergenic | 30.0% | |
| AACTGATCTAAATCATACCA+TGG | + | chr1_1:28061585-28061604 | Msa0016950:intron | 30.0% | |
| ACTGATCTAAATCATACCAT+GGG | + | chr1_1:28061586-28061605 | Msa0016950:intron | 30.0% | |
| GTTGTCTATTTATTGGAAAC+TGG | + | chr1_1:28061646-28061665 | Msa0016950:intron | 30.0% | |
| TGATTGTATCTATTTGTGGT+TGG | - | chr1_1:28069601-28069620 | None:intergenic | 30.0% | |
| TTAATTCCACAATGCACACA+TGG | - | chr1_1:28060931-28060950 | None:intergenic | 35.0% | |
| TGTGTGCATTGTGGAATTAA+TGG | + | chr1_1:28060931-28060950 | Msa0016950:intron | 35.0% | |
| TTCAATAGATTCCCTCTACT+TGG | + | chr1_1:28060982-28061001 | Msa0016950:intron | 35.0% | |
| TCAATAGATTCCCTCTACTT+GGG | + | chr1_1:28060983-28061002 | Msa0016950:intron | 35.0% | |
| ATATGATTTCCCCAAGTAGA+GGG | - | chr1_1:28060996-28061015 | None:intergenic | 35.0% | |
| AATATGATTTCCCCAAGTAG+AGG | - | chr1_1:28060997-28061016 | None:intergenic | 35.0% | |
| GGGGAAATCATATTCAAAGT+AGG | + | chr1_1:28061003-28061022 | Msa0016950:intron | 35.0% | |
| TTGTAAAAAACCGCTCTGAT+CGG | + | chr1_1:28061126-28061145 | Msa0016950:intron | 35.0% | |
| CAAACTAAACCGCCTATAAT+TGG | + | chr1_1:28061474-28061493 | Msa0016950:intron | 35.0% | |
| TGATCTGTTCCAATTATAGG+CGG | - | chr1_1:28061486-28061505 | None:intergenic | 35.0% | |
| GTCTGATCTGTTCCAATTAT+AGG | - | chr1_1:28061489-28061508 | None:intergenic | 35.0% | |
| !! | AATCATACCATGGGTTTTGA+TGG | + | chr1_1:28061595-28061614 | Msa0016950:intron | 35.0% |
| GAAACTAAACTTTGGCGTAA+AGG | + | chr1_1:28062006-28062025 | Msa0016950:CDS | 35.0% | |
| !! | CATAGTATTGGCTTCTCATA+CGG | - | chr1_1:28062033-28062052 | None:intergenic | 35.0% |
| CCACAAGCATTACATAGTAT+TGG | - | chr1_1:28062045-28062064 | None:intergenic | 35.0% | |
| CCAATACTATGTAATGCTTG+TGG | + | chr1_1:28062042-28062061 | Msa0016950:CDS | 35.0% | |
| CTTCGGAAGATAGTTATCAA+GGG | - | chr1_1:28062091-28062110 | None:intergenic | 35.0% | |
| TCTTCGGAAGATAGTTATCA+AGG | - | chr1_1:28062092-28062111 | None:intergenic | 35.0% | |
| !! | GTCTGATAACTGATTTTGCT+GGG | - | chr1_1:28062118-28062137 | None:intergenic | 35.0% |
| ATCAGACCTTGACATTGAAA+AGG | + | chr1_1:28062131-28062150 | Msa0016950:CDS | 35.0% | |
| ! | CAGATTCCTTTTCAATGTCA+AGG | - | chr1_1:28062140-28062159 | None:intergenic | 35.0% |
| AGCATTCATTTGAGTAGACA+CGG | + | chr1_1:28062399-28062418 | Msa0016950:intron | 35.0% | |
| ATTTGAGTAGACACGGTATT+AGG | + | chr1_1:28062406-28062425 | Msa0016950:intron | 35.0% | |
| ! | GAATTGTATTGATGGGGATT+AGG | + | chr1_1:28062437-28062456 | Msa0016950:intron | 35.0% |
| TCATACACGGTACATATCAA+TGG | - | chr1_1:28062557-28062576 | None:intergenic | 35.0% | |
| GATTGTGAAGAATCAAATGG+AGG | + | chr1_1:28062622-28062641 | Msa0016950:CDS | 35.0% | |
| TGTATACCAAGCAATGAGAT+AGG | + | chr1_1:28062740-28062759 | Msa0016950:CDS | 35.0% | |
| TAGCCTGGTATATTGTGAAT+CGG | + | chr1_1:28062829-28062848 | Msa0016950:intron | 35.0% | |
| !! | TAACTTGTTATAGGTACAGG+GGG | + | chr1_1:28063143-28063162 | Msa0016950:intron | 35.0% |
| AAGAAGAGGATAAGCTTAAC+CGG | - | chr1_1:28063197-28063216 | None:intergenic | 35.0% | |
| ! | TCATACATCTTTGGTTCCTA+GGG | + | chr1_1:28063291-28063310 | Msa0016950:intron | 35.0% |
| GCTGAGGAATAAGTAAATTC+TGG | - | chr1_1:28063375-28063394 | None:intergenic | 35.0% | |
| GTAGTGTGTGTAAGAAATGA+AGG | - | chr1_1:28063452-28063471 | None:intergenic | 35.0% | |
| ! | TCAACTACGACTTTTGTTAG+AGG | + | chr1_1:28063587-28063606 | Msa0016950:intron | 35.0% |
| TTGCGATAGATGATATTGGA+GGG | - | chr1_1:28063946-28063965 | None:intergenic | 35.0% | |
| ATTGCGATAGATGATATTGG+AGG | - | chr1_1:28063947-28063966 | None:intergenic | 35.0% | |
| CTATCGCAATCTATTCTTGA+TGG | + | chr1_1:28063957-28063976 | Msa0016950:intron | 35.0% | |
| ! | GCAATCTATTCTTGATGGTT+AGG | + | chr1_1:28063962-28063981 | Msa0016950:intron | 35.0% |
| TACAATAGAGACTAAGGTTG+AGG | + | chr1_1:28064119-28064138 | Msa0016950:intron | 35.0% | |
| TCAAGAGAAAGGTAAGAACT+AGG | - | chr1_1:28064166-28064185 | None:intergenic | 35.0% | |
| AACGAAGTAGTTCAAGAGAA+AGG | - | chr1_1:28064177-28064196 | None:intergenic | 35.0% | |
| GACTAATATCCATGTGAGTT+TGG | + | chr1_1:28064236-28064255 | Msa0016950:intron | 35.0% | |
| ! | ATTTTCATCCCAAACTCACA+TGG | - | chr1_1:28064248-28064267 | None:intergenic | 35.0% |
| GAATGAGAATGACACATGAT+TGG | - | chr1_1:28064334-28064353 | None:intergenic | 35.0% | |
| AGAAAGGTTAACGATGAAGT+TGG | - | chr1_1:28064373-28064392 | None:intergenic | 35.0% | |
| AGTGTTTCAAGGAAGAAGAA+AGG | - | chr1_1:28064389-28064408 | None:intergenic | 35.0% | |
| GAAACAGTTGTAGTGTTTCA+AGG | - | chr1_1:28064400-28064419 | None:intergenic | 35.0% | |
| AAAAGATGGTTGAAGGTGAA+GGG | - | chr1_1:28064428-28064447 | None:intergenic | 35.0% | |
| ! | GGTATGATTTGCAACTCATT+TGG | - | chr1_1:28064568-28064587 | None:intergenic | 35.0% |
| GAATTCCAATTTGAGAGAAG+TGG | + | chr1_1:28064719-28064738 | Msa0016950:intron | 35.0% | |
| AACAGAACAAGAACACAACA+AGG | - | chr1_1:28064749-28064768 | None:intergenic | 35.0% | |
| GACTGAAAATAGCACATGAT+TGG | + | chr1_1:28064959-28064978 | Msa0016950:intron | 35.0% | |
| CACATGAGAATGGTAGTTAT+AGG | - | chr1_1:28065065-28065084 | None:intergenic | 35.0% | |
| CTCGTCATCATCATTAGTAT+TGG | - | chr1_1:28065236-28065255 | None:intergenic | 35.0% | |
| !! | GAGCCAGAAAAATTTGTTGA+AGG | + | chr1_1:28065334-28065353 | Msa0016950:intron | 35.0% |
| !! | GCCAGAAAAATTTGTTGAAG+GGG | + | chr1_1:28065336-28065355 | Msa0016950:intron | 35.0% |
| !! | CCAGAAAAATTTGTTGAAGG+GGG | + | chr1_1:28065337-28065356 | Msa0016950:intron | 35.0% |
| TGACTCTACAAGTAATACAC+GGG | - | chr1_1:28065372-28065391 | None:intergenic | 35.0% | |
| ! | GAGTGCAGAAATTTTCTATG+GGG | - | chr1_1:28065942-28065961 | None:intergenic | 35.0% |
| ! | CTGAGTGCAGAAATTTTCTA+TGG | - | chr1_1:28065944-28065963 | None:intergenic | 35.0% |
| ! | GTTTCAGTAAACGAACCTTT+TGG | + | chr1_1:28066219-28066238 | Msa0016950:intron | 35.0% |
| TATGAAAAGAAGATGGAACG+TGG | + | chr1_1:28066545-28066564 | Msa0016950:intron | 35.0% | |
| !! | AAAAAGCACTCTTTCAAAGG+GGG | + | chr1_1:28066646-28066665 | Msa0016950:intron | 35.0% |
| GGAACTACCTATAGTAGTTT+AGG | - | chr1_1:28066717-28066736 | None:intergenic | 35.0% | |
| AATGTTTCCCTGCGAAAATT+CGG | + | chr1_1:28067049-28067068 | Msa0016950:intron | 35.0% | |
| ! | CCTTTTAACGAAATAGAGGT+GGG | + | chr1_1:28067284-28067303 | Msa0016950:intron | 35.0% |
| !! | ATTGGTAAGTTGGTGGAAAT+GGG | + | chr1_1:28067369-28067388 | Msa0016950:intron | 35.0% |
| GTCTCTCCAAAAACTAGTAT+TGG | - | chr1_1:28067512-28067531 | None:intergenic | 35.0% | |
| CCTTGGAAATAAGTCAAAGA+GGG | - | chr1_1:28067554-28067573 | None:intergenic | 35.0% | |
| ACCTTGGAAATAAGTCAAAG+AGG | - | chr1_1:28067555-28067574 | None:intergenic | 35.0% | |
| AAGATGAAAATGGATGTTCG+TGG | + | chr1_1:28067595-28067614 | Msa0016950:intron | 35.0% | |
| GTTGATGTCTCTTGCATATA+TGG | + | chr1_1:28067677-28067696 | Msa0016950:intron | 35.0% | |
| ! | TTTCTCTCCGTTACACATTT+TGG | - | chr1_1:28067815-28067834 | None:intergenic | 35.0% |
| ! | TTTTAGATAGGGGAAGTCAT+AGG | + | chr1_1:28068035-28068054 | Msa0016950:intron | 35.0% |
| TTTAGATAGGGGAAGTCATA+GGG | + | chr1_1:28068036-28068055 | Msa0016950:intron | 35.0% | |
| TACCAACTGAGCTAAGTTTA+CGG | - | chr1_1:28068093-28068112 | None:intergenic | 35.0% | |
| ! | TAAACTTAGCTCAGTTGGTA+GGG | + | chr1_1:28068093-28068112 | Msa0016950:intron | 35.0% |
| GGACATTGCATAATTTATGC+AGG | + | chr1_1:28068114-28068133 | Msa0016950:intron | 35.0% | |
| ACAATTAAACGTGGAGAAGT+GGG | - | chr1_1:28068164-28068183 | None:intergenic | 35.0% | |
| !! | TTTTTGGTCTAGTAGTCTAG+TGG | - | chr1_1:28068198-28068217 | None:intergenic | 35.0% |
| !!! | ATTTGTTTTTTCCGCGTGTT+GGG | + | chr1_1:28068291-28068310 | Msa0016950:intron | 35.0% |
| ! | CTTTAGGTTTCAATTGGAAG+AGG | - | chr1_1:28068512-28068531 | None:intergenic | 35.0% |
| TCCAATTGAAACCTAAAGCT+TGG | + | chr1_1:28068514-28068533 | Msa0016950:intron | 35.0% | |
| !! | ACCAAGCTTTAGGTTTCAAT+TGG | - | chr1_1:28068518-28068537 | None:intergenic | 35.0% |
| CTACTTAATTCAAGCTCAAC+TGG | + | chr1_1:28068566-28068585 | Msa0016950:intron | 35.0% | |
| TTGAGTTAAGATGAATGAGC+AGG | - | chr1_1:28068603-28068622 | None:intergenic | 35.0% | |
| TTAATTCCACAATGCACACA+TGG | - | chr1_1:28060931-28060950 | None:intergenic | 35.0% | |
| TGTGTGCATTGTGGAATTAA+TGG | + | chr1_1:28060931-28060950 | Msa0016950:intron | 35.0% | |
| TTCAATAGATTCCCTCTACT+TGG | + | chr1_1:28060982-28061001 | Msa0016950:intron | 35.0% | |
| TCAATAGATTCCCTCTACTT+GGG | + | chr1_1:28060983-28061002 | Msa0016950:intron | 35.0% | |
| ATATGATTTCCCCAAGTAGA+GGG | - | chr1_1:28060996-28061015 | None:intergenic | 35.0% | |
| AATATGATTTCCCCAAGTAG+AGG | - | chr1_1:28060997-28061016 | None:intergenic | 35.0% | |
| GGGGAAATCATATTCAAAGT+AGG | + | chr1_1:28061003-28061022 | Msa0016950:intron | 35.0% | |
| TTGTAAAAAACCGCTCTGAT+CGG | + | chr1_1:28061126-28061145 | Msa0016950:intron | 35.0% | |
| CAAACTAAACCGCCTATAAT+TGG | + | chr1_1:28061474-28061493 | Msa0016950:intron | 35.0% | |
| TGATCTGTTCCAATTATAGG+CGG | - | chr1_1:28061486-28061505 | None:intergenic | 35.0% | |
| GTCTGATCTGTTCCAATTAT+AGG | - | chr1_1:28061489-28061508 | None:intergenic | 35.0% | |
| !! | AATCATACCATGGGTTTTGA+TGG | + | chr1_1:28061595-28061614 | Msa0016950:intron | 35.0% |
| ! | GTATCTATTTGTGGTTGGTT+AGG | - | chr1_1:28069596-28069615 | None:intergenic | 35.0% |
| CAATAGATTCCCTCTACTTG+GGG | + | chr1_1:28060984-28061003 | Msa0016950:intron | 40.0% | |
| ACTCGTGGTTCAATTCAGAT+TGG | - | chr1_1:28061529-28061548 | None:intergenic | 40.0% | |
| ! | TGCTTGTGGACTACATTTCA+AGG | + | chr1_1:28062056-28062075 | Msa0016950:CDS | 40.0% |
| GGACTACATTTCAAGGCTAA+AGG | + | chr1_1:28062063-28062082 | Msa0016950:CDS | 40.0% | |
| ! | TGATTTTGCTGGGATGTCTT+CGG | - | chr1_1:28062108-28062127 | None:intergenic | 40.0% |
| !! | GGTCTGATAACTGATTTTGC+TGG | - | chr1_1:28062119-28062138 | None:intergenic | 40.0% |
| !! | TGGAGATTGGTTTGAAAGCT+CGG | - | chr1_1:28062172-28062191 | None:intergenic | 40.0% |
| ATTCACATGCATAGATAGCC+TGG | + | chr1_1:28062814-28062833 | Msa0016950:intron | 40.0% | |
| !! | ATGCCGATTCACAATATACC+AGG | - | chr1_1:28062835-28062854 | None:intergenic | 40.0% |
| !! | AGAGAATGATTTTGGTGGAG+AGG | + | chr1_1:28063059-28063078 | Msa0016950:intron | 40.0% |
| AGCTTAACCGGGTTTGTAAT+CGG | - | chr1_1:28063185-28063204 | None:intergenic | 40.0% | |
| AGAAGAGGATAAGCTTAACC+GGG | - | chr1_1:28063196-28063215 | None:intergenic | 40.0% | |
| ACACAGATCAGTTCAAGAAG+AGG | - | chr1_1:28063211-28063230 | None:intergenic | 40.0% | |
| ! | CTCATACATCTTTGGTTCCT+AGG | + | chr1_1:28063290-28063309 | Msa0016950:intron | 40.0% |
| AGAAAGTCATTATGCACCCT+AGG | - | chr1_1:28063310-28063329 | None:intergenic | 40.0% | |
| TTGTTAGACACGTGGTTGAA+AGG | - | chr1_1:28063668-28063687 | None:intergenic | 40.0% | |
| AACCACGTGTCTAACAATGT+TGG | + | chr1_1:28063671-28063690 | Msa0016950:intron | 40.0% | |
| ACCACGTGTCTAACAATGTT+GGG | + | chr1_1:28063672-28063691 | Msa0016950:intron | 40.0% | |
| GTTGAAGACGAAGATTCTTC+AGG | - | chr1_1:28063733-28063752 | None:intergenic | 40.0% | |
| GAAAAGATGGTTGAAGGTGA+AGG | - | chr1_1:28064429-28064448 | None:intergenic | 40.0% | |
| GAATTCTTACTGCTTGGATC+AGG | - | chr1_1:28064705-28064724 | None:intergenic | 40.0% | |
| GAACTCCACTTCTCTCAAAT+TGG | - | chr1_1:28064727-28064746 | None:intergenic | 40.0% | |
| !!! | ATTGTTGGAACTGGTTTTGG+AGG | + | chr1_1:28064840-28064859 | Msa0016950:intron | 40.0% |
| !!! | TTGTTGGAACTGGTTTTGGA+GGG | + | chr1_1:28064841-28064860 | Msa0016950:intron | 40.0% |
| ACGCTTTCAAACCCAAACTT+GGG | - | chr1_1:28064896-28064915 | None:intergenic | 40.0% | |
| GTGAAGCAGAAGAAGAGAAT+GGG | + | chr1_1:28064914-28064933 | Msa0016950:intron | 40.0% | |
| AATAGCACATGATTGGCACA+TGG | + | chr1_1:28064966-28064985 | Msa0016950:intron | 40.0% | |
| ATAGCACATGATTGGCACAT+GGG | + | chr1_1:28064967-28064986 | Msa0016950:intron | 40.0% | |
| ! | CCCCCTTCAACAAATTTTTC+TGG | - | chr1_1:28065340-28065359 | None:intergenic | 40.0% |
| ! | TTGGTAATCTAGGAATCGGA+TGG | + | chr1_1:28065498-28065517 | Msa0016950:intron | 40.0% |
| ATCTAGGAATCGGATGGAAT+AGG | + | chr1_1:28065504-28065523 | Msa0016950:intron | 40.0% | |
| !! | AAAAGCACTCTTTCAAAGGG+GGG | + | chr1_1:28066647-28066666 | Msa0016950:intron | 40.0% |
| CACCCCCAAAACTAATATGT+AGG | - | chr1_1:28066685-28066704 | None:intergenic | 40.0% | |
| !!! | CTACATATTAGTTTTGGGGG+TGG | + | chr1_1:28066683-28066702 | Msa0016950:intron | 40.0% |
| GACAACCCCTAAACTACTAT+AGG | + | chr1_1:28066707-28066726 | Msa0016950:intron | 40.0% | |
| ACAAAGTTTATGAGCAGGGA+CGG | - | chr1_1:28066738-28066757 | None:intergenic | 40.0% | |
| GGTTAAAGGTTGAGAGTCTT+AGG | - | chr1_1:28066863-28066882 | None:intergenic | 40.0% | |
| GTAGAAACCTCAGAGGTTAA+AGG | - | chr1_1:28066877-28066896 | None:intergenic | 40.0% | |
| ! | GCCTTTTAACGAAATAGAGG+TGG | + | chr1_1:28067283-28067302 | Msa0016950:intron | 40.0% |
| CCCACCTCTATTTCGTTAAA+AGG | - | chr1_1:28067287-28067306 | None:intergenic | 40.0% | |
| !! | GATTGGTAAGTTGGTGGAAA+TGG | + | chr1_1:28067368-28067387 | Msa0016950:intron | 40.0% |
| !! | TTGGTAAGTTGGTGGAAATG+GGG | + | chr1_1:28067370-28067389 | Msa0016950:intron | 40.0% |
| TTTGATGTCTCTTGCGAATG+TGG | + | chr1_1:28067434-28067453 | Msa0016950:intron | 40.0% | |
| TGTTTAATGAAAGGGTGGTG+AGG | + | chr1_1:28067469-28067488 | Msa0016950:intron | 40.0% | |
| TGGTGAGGAAAATGGGTAAT+GGG | + | chr1_1:28067484-28067503 | Msa0016950:intron | 40.0% | |
| TGGAAATAAGTCAAAGAGGG+TGG | - | chr1_1:28067551-28067570 | None:intergenic | 40.0% | |
| ! | CCCTCTTTGACTTATTTCCA+AGG | + | chr1_1:28067551-28067570 | Msa0016950:intron | 40.0% |
| ACCAACTGAGCTAAGTTTAC+GGG | - | chr1_1:28068092-28068111 | None:intergenic | 40.0% | |
| GTAAACTTAGCTCAGTTGGT+AGG | + | chr1_1:28068092-28068111 | Msa0016950:intron | 40.0% | |
| CATAATTTATGCAGGAGTCG+AGG | + | chr1_1:28068122-28068141 | Msa0016950:intron | 40.0% | |
| CAATTAAACGTGGAGAAGTG+GGG | - | chr1_1:28068163-28068182 | None:intergenic | 40.0% | |
| CACAATTAAACGTGGAGAAG+TGG | - | chr1_1:28068165-28068184 | None:intergenic | 40.0% | |
| AGAGCTCACACAATTAAACG+TGG | - | chr1_1:28068173-28068192 | None:intergenic | 40.0% | |
| !!! | CATTTGTTTTTTCCGCGTGT+TGG | + | chr1_1:28068290-28068309 | Msa0016950:intron | 40.0% |
| ATAATACACAACCCAACACG+CGG | - | chr1_1:28068305-28068324 | None:intergenic | 40.0% | |
| AAGCCGATAAACCAAGCTTT+AGG | - | chr1_1:28068528-28068547 | None:intergenic | 40.0% | |
| CAATAGATTCCCTCTACTTG+GGG | + | chr1_1:28060984-28061003 | Msa0016950:intron | 40.0% | |
| ACTCGTGGTTCAATTCAGAT+TGG | - | chr1_1:28061529-28061548 | None:intergenic | 40.0% | |
| AGGGATGATCACATCCAAAC+TGG | + | chr1_1:28061023-28061042 | Msa0016950:intron | 45.0% | |
| ! | ATGGTTGGTTAGGCATGTTG+AGG | - | chr1_1:28061872-28061891 | None:intergenic | 45.0% |
| !! | GGAGATTGGTTTGAAAGCTC+GGG | - | chr1_1:28062171-28062190 | None:intergenic | 45.0% |
| GAGCTTTCAAACCAATCTCC+AGG | + | chr1_1:28062171-28062190 | Msa0016950:CDS | 45.0% | |
| CCAATGCCTATCTCATTGCT+TGG | - | chr1_1:28062749-28062768 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGCAT+TGG | + | chr1_1:28062746-28062765 | Msa0016950:CDS | 45.0% | |
| ! | TCCTTCACCGATTACAAACC+CGG | + | chr1_1:28063175-28063194 | Msa0016950:intron | 45.0% |
| GCTGTTAAGTGAATCAGCTG+AGG | - | chr1_1:28063391-28063410 | None:intergenic | 45.0% | |
| AAGGACTCAAACGCTCGAAA+CGG | - | chr1_1:28063433-28063452 | None:intergenic | 45.0% | |
| !! | GTTGAAAGGTACTACGCTTG+GGG | - | chr1_1:28063654-28063673 | None:intergenic | 45.0% |
| !! | GGTTGAAAGGTACTACGCTT+GGG | - | chr1_1:28063655-28063674 | None:intergenic | 45.0% |
| !! | TGGTTGAAAGGTACTACGCT+TGG | - | chr1_1:28063656-28063675 | None:intergenic | 45.0% |
| CCACGTGTCTAACAATGTTG+GGG | + | chr1_1:28063673-28063692 | Msa0016950:intron | 45.0% | |
| AAGATTCTTCAGGAACGCAG+AGG | - | chr1_1:28063723-28063742 | None:intergenic | 45.0% | |
| GTAGTTCAGCGTACACCATT+TGG | + | chr1_1:28063756-28063775 | Msa0016950:intron | 45.0% | |
| !! | GAGAAGTACTCAACGCCAAA+TGG | - | chr1_1:28063774-28063793 | None:intergenic | 45.0% |
| TAGGGCAGATAATGAAGTCG+AGG | - | chr1_1:28064047-28064066 | None:intergenic | 45.0% | |
| AGAACTAGGAGCTTCAAGGA+AGG | - | chr1_1:28064152-28064171 | None:intergenic | 45.0% | |
| GGTAAGAACTAGGAGCTTCA+AGG | - | chr1_1:28064156-28064175 | None:intergenic | 45.0% | |
| TCGCTGGAAAAGATGGTTGA+AGG | - | chr1_1:28064435-28064454 | None:intergenic | 45.0% | |
| TCCTTATACCGGAATTGGTG+GGG | - | chr1_1:28064507-28064526 | None:intergenic | 45.0% | |
| CTCCTTATACCGGAATTGGT+GGG | - | chr1_1:28064508-28064527 | None:intergenic | 45.0% | |
| TCTCCTTATACCGGAATTGG+TGG | - | chr1_1:28064509-28064528 | None:intergenic | 45.0% | |
| TGCTCTCCTTATACCGGAAT+TGG | - | chr1_1:28064512-28064531 | None:intergenic | 45.0% | |
| ACACGATGCTCTCCTTATAC+CGG | - | chr1_1:28064518-28064537 | None:intergenic | 45.0% | |
| TGAAGCAAGAAGCCCAAGTT+TGG | + | chr1_1:28064881-28064900 | Msa0016950:intron | 45.0% | |
| GAAGCAAGAAGCCCAAGTTT+GGG | + | chr1_1:28064882-28064901 | Msa0016950:intron | 45.0% | |
| CACGCTTTCAAACCCAAACT+TGG | - | chr1_1:28064897-28064916 | None:intergenic | 45.0% | |
| CGTGAAGCAGAAGAAGAGAA+TGG | + | chr1_1:28064913-28064932 | Msa0016950:intron | 45.0% | |
| ! | AGAAGAGAATGGGAAGCGTA+AGG | + | chr1_1:28064924-28064943 | Msa0016950:intron | 45.0% |
| ! | GAAGAGAATGGGAAGCGTAA+GGG | + | chr1_1:28064925-28064944 | Msa0016950:intron | 45.0% |
| ! | CAAGCTTAGATAGAAGGCGT+TGG | + | chr1_1:28065202-28065221 | Msa0016950:intron | 45.0% |
| TGATGCTAACTCGTGCAACT+GGG | + | chr1_1:28065294-28065313 | Msa0016950:intron | 45.0% | |
| CTCTCAACCTTTAACCTCTG+AGG | + | chr1_1:28066867-28066886 | Msa0016950:intron | 45.0% | |
| ! | CTTACCACCGAATTTTCGCA+GGG | - | chr1_1:28067059-28067078 | None:intergenic | 45.0% |
| ! | ACTTACCACCGAATTTTCGC+AGG | - | chr1_1:28067060-28067079 | None:intergenic | 45.0% |
| GGAGCACATTCTTCCACAAA+GGG | - | chr1_1:28067329-28067348 | None:intergenic | 45.0% | |
| TGGAGCACATTCTTCCACAA+AGG | - | chr1_1:28067330-28067349 | None:intergenic | 45.0% | |
| TTGTGGAAGAATGTGCTCCA+AGG | + | chr1_1:28067330-28067349 | Msa0016950:intron | 45.0% | |
| ! | TGTGCTCCAAGGAAAGTATG+AGG | + | chr1_1:28067341-28067360 | Msa0016950:intron | 45.0% |
| ! | TCCAAGGAAAGTATGAGGAG+AGG | + | chr1_1:28067346-28067365 | Msa0016950:intron | 45.0% |
| TCCTCTCCTCATACTTTCCT+TGG | - | chr1_1:28067350-28067369 | None:intergenic | 45.0% | |
| ! | GGAAAGTATGAGGAGAGGAT+TGG | + | chr1_1:28067351-28067370 | Msa0016950:intron | 45.0% |
| ! | TGAGGAGAGGATTGGTAAGT+TGG | + | chr1_1:28067359-28067378 | Msa0016950:intron | 45.0% |
| !! | TGGTAAGTTGGTGGAAATGG+GGG | + | chr1_1:28067371-28067390 | Msa0016950:intron | 45.0% |
| CACCATCTTGATGCAAACCA+AGG | - | chr1_1:28067408-28067427 | None:intergenic | 45.0% | |
| !! | CTTGGTTTGCATCAAGATGG+TGG | + | chr1_1:28067406-28067425 | Msa0016950:intron | 45.0% |
| ATGTCTCTTGCGAATGTGGT+GGG | + | chr1_1:28067438-28067457 | Msa0016950:intron | 45.0% | |
| TGAAAGGGTGGTGAGGAAAA+TGG | + | chr1_1:28067476-28067495 | Msa0016950:intron | 45.0% | |
| GAAAGGGTGGTGAGGAAAAT+GGG | + | chr1_1:28067477-28067496 | Msa0016950:intron | 45.0% | |
| GTGGTGAGGAAAATGGGTAA+TGG | + | chr1_1:28067483-28067502 | Msa0016950:intron | 45.0% | |
| GGTGAGGAAAATGGGTAATG+GGG | + | chr1_1:28067485-28067504 | Msa0016950:intron | 45.0% | |
| ! | GTGAGGAAAATGGGTAATGG+GGG | + | chr1_1:28067486-28067505 | Msa0016950:intron | 45.0% |
| !!! | TGGGGGCCAATACTAGTTTT+TGG | + | chr1_1:28067503-28067522 | Msa0016950:intron | 45.0% |
| !!! | TTTTTTTGGGGGGGGATTAG+TGG | + | chr1_1:28067626-28067645 | Msa0016950:intron | 45.0% |
| !!! | TTTTTTGGGGGGGGATTAGT+GGG | + | chr1_1:28067627-28067646 | Msa0016950:intron | 45.0% |
| CCAACTGAGCTAAGTTTACG+GGG | - | chr1_1:28068091-28068110 | None:intergenic | 45.0% | |
| AGGGATGATCACATCCAAAC+TGG | + | chr1_1:28061023-28061042 | Msa0016950:intron | 45.0% | |
| !!! | TAATTTTTGAAAATATTTTA+TGG | + | chr1_1:28063890-28063909 | Msa0016950:intron | 5.0% |
| !!! | TTTTTTATTTTTTTAAATTG+AGG | - | chr1_1:28063919-28063938 | None:intergenic | 5.0% |
| !! | ATATATATATATATATATAG+GGG | - | chr1_1:28065094-28065113 | None:intergenic | 5.0% |
| !! | AAAAAAAAAATATTGAAATA+CGG | - | chr1_1:28065810-28065829 | None:intergenic | 5.0% |
| !!! | AATATTTTTTTTTTTACTTA+TGG | + | chr1_1:28065816-28065835 | Msa0016950:intron | 5.0% |
| !!! | TTAAATTTTTGAATATTTTT+TGG | - | chr1_1:28066263-28066282 | None:intergenic | 5.0% |
| !! | AAAACTATTAAAATTAAATA+AGG | + | chr1_1:28066360-28066379 | Msa0016950:intron | 5.0% |
| !!! | AATTAAAATTTGATTTATTT+TGG | - | chr1_1:28067847-28067866 | None:intergenic | 5.0% |
| !!! | AATAAATCAAATTTTAATTA+AGG | + | chr1_1:28067848-28067867 | Msa0016950:intron | 5.0% |
| !!! | ATAAATCAAATTTTAATTAA+GGG | + | chr1_1:28067849-28067868 | Msa0016950:intron | 5.0% |
| !!! | ATAATTTATATTTTTCTAAA+TGG | - | chr1_1:28067937-28067956 | None:intergenic | 5.0% |
| CATACACGATCCGATCAGAG+CGG | - | chr1_1:28061139-28061158 | None:intergenic | 50.0% | |
| GTGGACACCATCAAAACCCA+TGG | - | chr1_1:28061605-28061624 | None:intergenic | 50.0% | |
| ACCGGGTTTGTAATCGGTGA+AGG | - | chr1_1:28063179-28063198 | None:intergenic | 50.0% | |
| CGGACGAGGTTATGATGTCT+GGG | - | chr1_1:28063413-28063432 | None:intergenic | 50.0% | |
| ACGGACGAGGTTATGATGTC+TGG | - | chr1_1:28063414-28063433 | None:intergenic | 50.0% | |
| CCCCAACATTGTTAGACACG+TGG | - | chr1_1:28063676-28063695 | None:intergenic | 50.0% | |
| GGCAGATAATGAAGTCGAGG+CGG | - | chr1_1:28064044-28064063 | None:intergenic | 50.0% | |
| CCTTATACCGGAATTGGTGG+GGG | - | chr1_1:28064506-28064525 | None:intergenic | 50.0% | |
| !!! | GAACTGGTTTTGGAGGGTGA+GGG | + | chr1_1:28064847-28064866 | Msa0016950:intron | 50.0% |
| ! | ATGGGAAGCGTAAGGGATGA+AGG | + | chr1_1:28064932-28064951 | Msa0016950:intron | 50.0% |
| ! | GGGGGCATATCACATGAGAA+TGG | - | chr1_1:28065075-28065094 | None:intergenic | 50.0% |
| GTGATGCTAACTCGTGCAAC+TGG | + | chr1_1:28065293-28065312 | Msa0016950:intron | 50.0% | |
| TGCAACTGGGACTCATAACC+AGG | + | chr1_1:28065307-28065326 | Msa0016950:intron | 50.0% | |
| GCAACTGGGACTCATAACCA+GGG | + | chr1_1:28065308-28065327 | Msa0016950:intron | 50.0% | |
| !!! | AATTTTTCTGGCTCCGTCCC+TGG | - | chr1_1:28065328-28065347 | None:intergenic | 50.0% |
| GCGACTTGTAGAAACCTCAG+AGG | - | chr1_1:28066884-28066903 | None:intergenic | 50.0% | |
| GTTTCCCTGCGAAAATTCGG+TGG | + | chr1_1:28067052-28067071 | Msa0016950:intron | 50.0% | |
| ! | GGAGAGGATTGGTAAGTTGG+TGG | + | chr1_1:28067362-28067381 | Msa0016950:intron | 50.0% |
| !! | GGCCTTGGTTTGCATCAAGA+TGG | + | chr1_1:28067403-28067422 | Msa0016950:intron | 50.0% |
| GATGTCTCTTGCGAATGTGG+TGG | + | chr1_1:28067437-28067456 | Msa0016950:intron | 50.0% | |
| TGTCTCTTGCGAATGTGGTG+GGG | + | chr1_1:28067439-28067458 | Msa0016950:intron | 50.0% | |
| !! | TTTTTGGGGGGGGATTAGTG+GGG | + | chr1_1:28067628-28067647 | Msa0016950:intron | 50.0% |
| AGATAGGGGAAGTCATAGGG+AGG | + | chr1_1:28068039-28068058 | Msa0016950:intron | 50.0% | |
| CCCCGTAAACTTAGCTCAGT+TGG | + | chr1_1:28068088-28068107 | Msa0016950:intron | 50.0% | |
| CATACACGATCCGATCAGAG+CGG | - | chr1_1:28061139-28061158 | None:intergenic | 50.0% | |
| GTGGACACCATCAAAACCCA+TGG | - | chr1_1:28061605-28061624 | None:intergenic | 50.0% | |
| ! | GTGGTTGGTTAGGCATGTTG+AGG | - | chr1_1:28069586-28069605 | None:intergenic | 50.0% |
| ACGGGTCCATGTGTGCATTG+TGG | + | chr1_1:28060922-28060941 | Msa0016950:intron | 55.0% | |
| CGCTCTGATCGGATCGTGTA+TGG | + | chr1_1:28061137-28061156 | Msa0016950:intron | 55.0% | |
| TGGAAACTGGCGAGCCATAG+TGG | + | chr1_1:28061659-28061678 | Msa0016950:intron | 55.0% | |
| TCAAACGCTCGAAACGGACG+AGG | - | chr1_1:28063427-28063446 | None:intergenic | 55.0% | |
| TAGTCCTGAGCGCAGATACG+AGG | - | chr1_1:28063550-28063569 | None:intergenic | 55.0% | |
| GTTGGCGTCGCTGGAAAAGA+TGG | - | chr1_1:28064442-28064461 | None:intergenic | 55.0% | |
| CCCCCACCAATTCCGGTATA+AGG | + | chr1_1:28064503-28064522 | Msa0016950:intron | 55.0% | |
| !!! | GGAACTGGTTTTGGAGGGTG+AGG | + | chr1_1:28064846-28064865 | Msa0016950:intron | 55.0% |
| CTGGGACTCATAACCAGGGA+CGG | + | chr1_1:28065312-28065331 | Msa0016950:intron | 55.0% | |
| TTGGTGGAAATGGGGGAAGC+TGG | + | chr1_1:28067378-28067397 | Msa0016950:intron | 55.0% | |
| TGGAAATGGGGGAAGCTGGA+TGG | + | chr1_1:28067382-28067401 | Msa0016950:intron | 55.0% | |
| GTCTCTTGCGAATGTGGTGG+GGG | + | chr1_1:28067440-28067459 | Msa0016950:intron | 55.0% | |
| !! | TTTTGGGGGGGGATTAGTGG+GGG | + | chr1_1:28067629-28067648 | Msa0016950:intron | 55.0% |
| GGGTGGATGCGAGAGGATAA+TGG | + | chr1_1:28067649-28067668 | Msa0016950:intron | 55.0% | |
| TAGGGGAAGTCATAGGGAGG+TGG | + | chr1_1:28068042-28068061 | Msa0016950:intron | 55.0% | |
| AGGGGAAGTCATAGGGAGGT+GGG | + | chr1_1:28068043-28068062 | Msa0016950:intron | 55.0% | |
| AGGAGTCGAGGTTCGAACCT+CGG | + | chr1_1:28068134-28068153 | Msa0016950:intron | 55.0% | |
| ATGCACACATGGACCCGTCA+TGG | - | chr1_1:28060920-28060939 | None:intergenic | 55.0% | |
| ACGGGTCCATGTGTGCATTG+TGG | + | chr1_1:28060922-28060941 | Msa0016950:intron | 55.0% | |
| CGCTCTGATCGGATCGTGTA+TGG | + | chr1_1:28061137-28061156 | Msa0016950:intron | 55.0% | |
| TGGAAACTGGCGAGCCATAG+TGG | + | chr1_1:28061659-28061678 | Msa0016950:intron | 55.0% | |
| GAGCGCAGATACGAGGTTGC+AGG | - | chr1_1:28063543-28063562 | None:intergenic | 60.0% | |
| GCAACCTCGTATCTGCGCTC+AGG | + | chr1_1:28063543-28063562 | Msa0016950:intron | 60.0% | |
| !! | CACAAACTGGTGGTGGCTGC+GGG | - | chr1_1:28064480-28064499 | None:intergenic | 60.0% |
| !! | CCACAAACTGGTGGTGGCTG+CGG | - | chr1_1:28064481-28064500 | None:intergenic | 60.0% |
| TTAGTGGGGGTGGATGCGAG+AGG | + | chr1_1:28067642-28067661 | Msa0016950:intron | 60.0% | |
| GGGGAAGTCATAGGGAGGTG+GGG | + | chr1_1:28068044-28068063 | Msa0016950:intron | 60.0% | |
| GGGTTTCACGCCAGGAGGGT+TGG | - | chr1_1:28064460-28064479 | None:intergenic | 65.0% | |
| CTGCGGGTTTCACGCCAGGA+GGG | - | chr1_1:28064464-28064483 | None:intergenic | 65.0% | |
| CCGCAGCCACCACCAGTTTG+TGG | + | chr1_1:28064478-28064497 | Msa0016950:intron | 65.0% | |
| !! | TTGGTGGGGGCGCCACAAAC+TGG | - | chr1_1:28064493-28064512 | None:intergenic | 65.0% |
| TGTGGCGCCCCCACCAATTC+CGG | + | chr1_1:28064496-28064515 | Msa0016950:intron | 65.0% | |
| TGGGGGAAGCTGGATGGCCT+TGG | + | chr1_1:28067388-28067407 | Msa0016950:intron | 65.0% | |
| ! | GTGGAGAAGTGGGGTGTCCG+AGG | - | chr1_1:28068154-28068173 | None:intergenic | 65.0% |
| TCCAGCGACGCCAACCCTCC+TGG | + | chr1_1:28064447-28064466 | Msa0016950:intron | 70.0% | |
| GCTGCGGGTTTCACGCCAGG+AGG | - | chr1_1:28064465-28064484 | None:intergenic | 70.0% | |
| GTGGCTGCGGGTTTCACGCC+AGG | - | chr1_1:28064468-28064487 | None:intergenic | 70.0% | |
| ! | GGGGCGCCACAAACTGGTGG+TGG | - | chr1_1:28064487-28064506 | None:intergenic | 70.0% |
| !! | GTGGGGGCGCCACAAACTGG+TGG | - | chr1_1:28064490-28064509 | None:intergenic | 70.0% |
| ! | TGGGGGGGGATTAGTGGGGG+TGG | + | chr1_1:28067632-28067651 | Msa0016950:intron | 70.0% |
| ! | GCCAGGAGGGTTGGCGTCGC+TGG | - | chr1_1:28064451-28064470 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 28060919 | 28069662 | 28060919 | ID=Msa0016950;Name=Msa0016950 |
| chr1_1 | mRNA | 28060919 | 28069662 | 28060919 | ID=Msa0016950-mRNA-1;Parent=Msa0016950;Name=Msa0016950-mRNA-1;_AED=0.41;_eAED=0.43;_QI=0|0|0|0.8|0.5|0.4|5|0|131 |
| chr1_1 | exon | 28060919 | 28060925 | 28060919 | ID=Msa0016950-mRNA-1:exon:9411;Parent=Msa0016950-mRNA-1 |
| chr1_1 | exon | 28061989 | 28062192 | 28061989 | ID=Msa0016950-mRNA-1:exon:9412;Parent=Msa0016950-mRNA-1 |
| chr1_1 | exon | 28062609 | 28062665 | 28062609 | ID=Msa0016950-mRNA-1:exon:9413;Parent=Msa0016950-mRNA-1 |
| chr1_1 | exon | 28062675 | 28062790 | 28062675 | ID=Msa0016950-mRNA-1:exon:9414;Parent=Msa0016950-mRNA-1 |
| chr1_1 | exon | 28069651 | 28069662 | 28069651 | ID=Msa0016950-mRNA-1:exon:9415;Parent=Msa0016950-mRNA-1 |
| chr1_1 | CDS | 28060919 | 28060925 | 28060919 | ID=Msa0016950-mRNA-1:cds;Parent=Msa0016950-mRNA-1 |
| chr1_1 | CDS | 28061989 | 28062192 | 28061989 | ID=Msa0016950-mRNA-1:cds;Parent=Msa0016950-mRNA-1 |
| chr1_1 | CDS | 28062609 | 28062665 | 28062609 | ID=Msa0016950-mRNA-1:cds;Parent=Msa0016950-mRNA-1 |
| chr1_1 | CDS | 28062675 | 28062790 | 28062675 | ID=Msa0016950-mRNA-1:cds;Parent=Msa0016950-mRNA-1 |
| chr1_1 | CDS | 28069651 | 28069662 | 28069651 | ID=Msa0016950-mRNA-1:cds;Parent=Msa0016950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
