Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016970 | AES60398.2 | 85.075 | 134 | 20 | 0 | 1 | 134 | 1 | 134 | 1.27e-71 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0016970 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAAAGCTTCAAAGTCTA+TGG | 0.184389 | 1_1:+28104500 | Msa0016970:CDS |
| CCACAAGCATTACATAGTAT+TGG | 0.433061 | 1_1:-28100924 | None:intergenic |
| TGGAGATTGGTTTGAAAGCT+CGG | 0.447768 | 1_1:-28101051 | None:intergenic |
| GAAACTAAACTTTGGCGTAA+AGG | 0.456777 | 1_1:+28100888 | Msa0016970:CDS |
| TGCTTGTGGACTACATTTCA+AGG | 0.461822 | 1_1:+28100938 | Msa0016970:CDS |
| TCTTCGGAAGATAGTTATCA+AGG | 0.478433 | 1_1:-28100971 | None:intergenic |
| TGTATACCAAGCAATGAGAT+AGG | 0.478624 | 1_1:+28104589 | Msa0016970:CDS |
| ATCAGACCTTGACATTGAAA+AGG | 0.486095 | 1_1:+28101013 | Msa0016970:CDS |
| ATCGATTGTGAAGAATCAAA+TGG | 0.491491 | 1_1:+28104468 | Msa0016970:CDS |
| CATAGTATTGGCTTCTCATA+CGG | 0.492997 | 1_1:-28100912 | None:intergenic |
| GGAGATTGGTTTGAAAGCTC+GGG | 0.493147 | 1_1:-28101050 | None:intergenic |
| CCAAGCAATGAGATAGGCAT+TGG | 0.496933 | 1_1:+28104595 | Msa0016970:CDS |
| ATTTGATTCTTCACAATCGA+TGG | 0.523804 | 1_1:-28104466 | None:intergenic |
| ACAAAAGCTTCAAAGTCTAT+GGG | 0.556384 | 1_1:+28104501 | Msa0016970:CDS |
| CCAATGCCTATCTCATTGCT+TGG | 0.566560 | 1_1:-28104595 | None:intergenic |
| GAGCTTTCAAACCAATCTCC+AGG | 0.568278 | 1_1:+28101053 | Msa0016970:CDS |
| CCAATACTATGTAATGCTTG+TGG | 0.579274 | 1_1:+28100924 | Msa0016970:CDS |
| CTTCGGAAGATAGTTATCAA+GGG | 0.629882 | 1_1:-28100970 | None:intergenic |
| GATTGTGAAGAATCAAATGG+AGG | 0.680011 | 1_1:+28104471 | Msa0016970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATTTGTTGAAAAATG+GGG | - | chr1_1:28101113-28101132 | None:intergenic | 15.0% |
| !!! | CTTTATATTTGTTGAAAAAT+GGG | - | chr1_1:28101114-28101133 | None:intergenic | 15.0% |
| !!! | TAAAAGTTTTGCTTAAAATT+TGG | + | chr1_1:28101854-28101873 | Msa0016970:intron | 15.0% |
| !!! | TAAAAGTTTTGCTTAAAATT+TGG | + | chr1_1:28101854-28101873 | Msa0016970:intron | 15.0% |
| !!! | CTTTTAATTTTTTTGTAGAA+AGG | + | chr1_1:28104440-28104459 | Msa0016970:intron | 15.0% |
| !!! | TTATTGCATTTTTTATTACC+TGG | - | chr1_1:28101074-28101093 | None:intergenic | 20.0% |
| !!! | GCTTTATATTTGTTGAAAAA+TGG | - | chr1_1:28101115-28101134 | None:intergenic | 20.0% |
| !!! | ATTGTAAGAATTTTCTTAAG+AGG | + | chr1_1:28101168-28101187 | Msa0016970:intron | 20.0% |
| !! | AACACTACTATTTATATATG+AGG | + | chr1_1:28101219-28101238 | Msa0016970:intron | 20.0% |
| !!! | TTTTGAATGAATTGTATTGA+TGG | + | chr1_1:28101311-28101330 | Msa0016970:intron | 20.0% |
| !!! | TTTGAATGAATTGTATTGAT+GGG | + | chr1_1:28101312-28101331 | Msa0016970:intron | 20.0% |
| !! | TTATATGTATACATCATACA+CGG | - | chr1_1:28104419-28104438 | None:intergenic | 20.0% |
| !! | TTTTGACAGAAACTAAACTT+TGG | + | chr1_1:28100880-28100899 | Msa0016970:CDS | 25.0% |
| !!! | ATTTTTTATTACCTGGAGAT+TGG | - | chr1_1:28101067-28101086 | None:intergenic | 25.0% |
| !! | TTTCTTAAGAGGTACAATTT+AGG | + | chr1_1:28101179-28101198 | Msa0016970:intron | 25.0% |
| ! | ATTGACAATGAAAGGAATTA+GGG | - | chr1_1:28101258-28101277 | None:intergenic | 25.0% |
| ! | TATTGACAATGAAAGGAATT+AGG | - | chr1_1:28101259-28101278 | None:intergenic | 25.0% |
| !! | TTGAATGAATTGTATTGATG+GGG | + | chr1_1:28101313-28101332 | Msa0016970:intron | 25.0% |
| ! | TTAAACGATTCAAAAGATCT+AGG | + | chr1_1:28103122-28103141 | Msa0016970:intron | 25.0% |
| ! | TTTGTATATGACAAAGTCTT+TGG | - | chr1_1:28103312-28103331 | None:intergenic | 25.0% |
| ! | AAAGGATAATCAAGTATCAT+GGG | - | chr1_1:28103596-28103615 | None:intergenic | 25.0% |
| ATGCTCTTATTGACAATGAA+AGG | - | chr1_1:28101266-28101285 | None:intergenic | 30.0% | |
| ! | TTACTCATCATATAGTGGAA+CGG | - | chr1_1:28101585-28101604 | None:intergenic | 30.0% |
| TAACGTTACTCATCATATAG+TGG | - | chr1_1:28101590-28101609 | None:intergenic | 30.0% | |
| TAAAATCAGGTTCAGAAATC+AGG | - | chr1_1:28102033-28102052 | None:intergenic | 30.0% | |
| GTGAGAGTTAACTTAAAATC+AGG | - | chr1_1:28102046-28102065 | None:intergenic | 30.0% | |
| ! | CAAACTACTCAAGGAATTTT+AGG | + | chr1_1:28102226-28102245 | Msa0016970:intron | 30.0% |
| TTTAAAGATACCATGCTCTA+CGG | - | chr1_1:28103107-28103126 | None:intergenic | 30.0% | |
| CAAAGGATAATCAAGTATCA+TGG | - | chr1_1:28103597-28103616 | None:intergenic | 30.0% | |
| ! | TTACTCATCATATAGTGGAA+CGG | - | chr1_1:28101585-28101604 | None:intergenic | 30.0% |
| TAACGTTACTCATCATATAG+TGG | - | chr1_1:28101590-28101609 | None:intergenic | 30.0% | |
| TAAAATCAGGTTCAGAAATC+AGG | - | chr1_1:28102033-28102052 | None:intergenic | 30.0% | |
| GTGAGAGTTAACTTAAAATC+AGG | - | chr1_1:28102046-28102065 | None:intergenic | 30.0% | |
| AACTCTCACACATACATTTA+TGG | + | chr1_1:28104322-28104341 | Msa0016970:intron | 30.0% | |
| ATTTGATTCTTCACAATCGA+TGG | - | chr1_1:28104469-28104488 | None:intergenic | 30.0% | |
| ATCGATTGTGAAGAATCAAA+TGG | + | chr1_1:28104468-28104487 | Msa0016970:CDS | 30.0% | |
| AACAAAAGCTTCAAAGTCTA+TGG | + | chr1_1:28104500-28104519 | Msa0016970:CDS | 30.0% | |
| ACAAAAGCTTCAAAGTCTAT+GGG | + | chr1_1:28104501-28104520 | Msa0016970:CDS | 30.0% | |
| GAAACTAAACTTTGGCGTAA+AGG | + | chr1_1:28100888-28100907 | Msa0016970:CDS | 35.0% | |
| !! | CATAGTATTGGCTTCTCATA+CGG | - | chr1_1:28100915-28100934 | None:intergenic | 35.0% |
| CCACAAGCATTACATAGTAT+TGG | - | chr1_1:28100927-28100946 | None:intergenic | 35.0% | |
| CCAATACTATGTAATGCTTG+TGG | + | chr1_1:28100924-28100943 | Msa0016970:CDS | 35.0% | |
| CTTCGGAAGATAGTTATCAA+GGG | - | chr1_1:28100973-28100992 | None:intergenic | 35.0% | |
| TCTTCGGAAGATAGTTATCA+AGG | - | chr1_1:28100974-28100993 | None:intergenic | 35.0% | |
| !! | GTCTGATAACTGATTTTGCT+GGG | - | chr1_1:28101000-28101019 | None:intergenic | 35.0% |
| ATCAGACCTTGACATTGAAA+AGG | + | chr1_1:28101013-28101032 | Msa0016970:CDS | 35.0% | |
| ! | CAGATTCCTTTTCAATGTCA+AGG | - | chr1_1:28101022-28101041 | None:intergenic | 35.0% |
| AGCATTCATTTGAGTAGACA+CGG | + | chr1_1:28101281-28101300 | Msa0016970:intron | 35.0% | |
| ATTTGAGTAGACACGGTATT+AGG | + | chr1_1:28101288-28101307 | Msa0016970:intron | 35.0% | |
| ! | GAATTGTATTGATGGGGATT+AGG | + | chr1_1:28101319-28101338 | Msa0016970:intron | 35.0% |
| ACCAATAACAACTTGATGTG+TGG | + | chr1_1:28101398-28101417 | Msa0016970:intron | 35.0% | |
| ! | TCCACACATCAAGTTGTTAT+TGG | - | chr1_1:28101402-28101421 | None:intergenic | 35.0% |
| TGTTCCACACACTTTGATAT+TGG | - | chr1_1:28101444-28101463 | None:intergenic | 35.0% | |
| AAAACAACAGCGAGAGAAAA+AGG | + | chr1_1:28101487-28101506 | Msa0016970:intron | 35.0% | |
| !! | AAGAATTTGTTGACCCAGTT+CGG | + | chr1_1:28101523-28101542 | Msa0016970:intron | 35.0% |
| TGATGAGTAACGTTACAAAG+AGG | + | chr1_1:28101595-28101614 | Msa0016970:intron | 35.0% | |
| ACTATTAGGATTGAGTCTCT+TGG | - | chr1_1:28101683-28101702 | None:intergenic | 35.0% | |
| AATCCTAATAGTGTTTCCCA+AGG | + | chr1_1:28101691-28101710 | Msa0016970:intron | 35.0% | |
| ! | TTTGAAGGTTGATTCACCTT+GGG | - | chr1_1:28101710-28101729 | None:intergenic | 35.0% |
| TGTCTCTTGACAACAAACTA+GGG | - | chr1_1:28101733-28101752 | None:intergenic | 35.0% | |
| TTGTCTCTTGACAACAAACT+AGG | - | chr1_1:28101734-28101753 | None:intergenic | 35.0% | |
| GAAAGGCAACAACAAAACTA+GGG | - | chr1_1:28101769-28101788 | None:intergenic | 35.0% | |
| AGAAAGGCAACAACAAAACT+AGG | - | chr1_1:28101770-28101789 | None:intergenic | 35.0% | |
| ACTATTGAGGTAGAGATAGA+GGG | - | chr1_1:28101810-28101829 | None:intergenic | 35.0% | |
| TACCTCAATAGTCTGATACA+AGG | + | chr1_1:28101818-28101837 | Msa0016970:intron | 35.0% | |
| !! | TCATCACTGATTTGAAGTCA+AGG | - | chr1_1:28102078-28102097 | None:intergenic | 35.0% |
| GTACACAAGGATCTTCAAAA+GGG | - | chr1_1:28102207-28102226 | None:intergenic | 35.0% | |
| TGTACACAAGGATCTTCAAA+AGG | - | chr1_1:28102208-28102227 | None:intergenic | 35.0% | |
| CTGAAATTCCTAGTGTAGTT+TGG | - | chr1_1:28102324-28102343 | None:intergenic | 35.0% | |
| CAAACTACACTAGGAATTTC+AGG | + | chr1_1:28102322-28102341 | Msa0016970:intron | 35.0% | |
| GAATTACCCTAAAAGTCCAA+GGG | - | chr1_1:28102426-28102445 | None:intergenic | 35.0% | |
| AGGTTGAAGAATGTATAGCA+CGG | - | chr1_1:28102455-28102474 | None:intergenic | 35.0% | |
| AAGGGATTTCTTCATGAAGA+CGG | - | chr1_1:28102490-28102509 | None:intergenic | 35.0% | |
| TTCAAGGTTGAAGACATAGT+GGG | - | chr1_1:28102624-28102643 | None:intergenic | 35.0% | |
| AAGAATACTCATGATCAGTC+TGG | - | chr1_1:28102693-28102712 | None:intergenic | 35.0% | |
| TTAAACACTCAACATCATCC+TGG | - | chr1_1:28102728-28102747 | None:intergenic | 35.0% | |
| ! | GTGCTTTAAGTGTAACAAGA+TGG | - | chr1_1:28102913-28102932 | None:intergenic | 35.0% |
| !! | ACTTGAGAGTTGATGAAAAC+GGG | - | chr1_1:28103013-28103032 | None:intergenic | 35.0% |
| !! | GACTTGAGAGTTGATGAAAA+CGG | - | chr1_1:28103014-28103033 | None:intergenic | 35.0% |
| GAATATTGAGGTGAATCTTG+AGG | - | chr1_1:28103183-28103202 | None:intergenic | 35.0% | |
| ! | TGATGACTTGGAGAATATTG+AGG | - | chr1_1:28103195-28103214 | None:intergenic | 35.0% |
| CAATATTCTCCAAGTCATCA+AGG | + | chr1_1:28103195-28103214 | Msa0016970:intron | 35.0% | |
| ! | CAACAAAATCCTTGATGACT+TGG | - | chr1_1:28103207-28103226 | None:intergenic | 35.0% |
| ACAACTCTACTCATTCAAGA+TGG | - | chr1_1:28103267-28103286 | None:intergenic | 35.0% | |
| !! | AAGTGTGAGAAAGCTTTGAA+GGG | - | chr1_1:28103488-28103507 | None:intergenic | 35.0% |
| ATGGAAGGTAAAGATGAAAG+CGG | - | chr1_1:28103525-28103544 | None:intergenic | 35.0% | |
| !!! | TAACGATTTTGGGTTATGGA+AGG | - | chr1_1:28103540-28103559 | None:intergenic | 35.0% |
| !!! | GAGATAACGATTTTGGGTTA+TGG | - | chr1_1:28103544-28103563 | None:intergenic | 35.0% |
| TAACCCAAAATCGTTATCTC+CGG | + | chr1_1:28103544-28103563 | Msa0016970:intron | 35.0% | |
| ! | TTACCGGAGATAACGATTTT+GGG | - | chr1_1:28103550-28103569 | None:intergenic | 35.0% |
| ! | TTTACCGGAGATAACGATTT+TGG | - | chr1_1:28103551-28103570 | None:intergenic | 35.0% |
| TGGGATATTGAGAAGTTTAC+CGG | - | chr1_1:28103566-28103585 | None:intergenic | 35.0% | |
| AAGTATCATGGGTTCAAAGT+GGG | - | chr1_1:28103585-28103604 | None:intergenic | 35.0% | |
| ACCAATAACAACTTGATGTG+TGG | + | chr1_1:28101398-28101417 | Msa0016970:intron | 35.0% | |
| ! | TCCACACATCAAGTTGTTAT+TGG | - | chr1_1:28101402-28101421 | None:intergenic | 35.0% |
| TGTTCCACACACTTTGATAT+TGG | - | chr1_1:28101444-28101463 | None:intergenic | 35.0% | |
| AAAACAACAGCGAGAGAAAA+AGG | + | chr1_1:28101487-28101506 | Msa0016970:intron | 35.0% | |
| !! | AAGAATTTGTTGACCCAGTT+CGG | + | chr1_1:28101523-28101542 | Msa0016970:intron | 35.0% |
| TGATGAGTAACGTTACAAAG+AGG | + | chr1_1:28101595-28101614 | Msa0016970:intron | 35.0% | |
| ACTATTAGGATTGAGTCTCT+TGG | - | chr1_1:28101683-28101702 | None:intergenic | 35.0% | |
| AATCCTAATAGTGTTTCCCA+AGG | + | chr1_1:28101691-28101710 | Msa0016970:intron | 35.0% | |
| ! | TTTGAAGGTTGATTCACCTT+GGG | - | chr1_1:28101710-28101729 | None:intergenic | 35.0% |
| TGTCTCTTGACAACAAACTA+GGG | - | chr1_1:28101733-28101752 | None:intergenic | 35.0% | |
| TTGTCTCTTGACAACAAACT+AGG | - | chr1_1:28101734-28101753 | None:intergenic | 35.0% | |
| GAAAGGCAACAACAAAACTA+GGG | - | chr1_1:28101769-28101788 | None:intergenic | 35.0% | |
| AGAAAGGCAACAACAAAACT+AGG | - | chr1_1:28101770-28101789 | None:intergenic | 35.0% | |
| ACTATTGAGGTAGAGATAGA+GGG | - | chr1_1:28101810-28101829 | None:intergenic | 35.0% | |
| TACCTCAATAGTCTGATACA+AGG | + | chr1_1:28101818-28101837 | Msa0016970:intron | 35.0% | |
| TCATACACGGTACATATCAA+TGG | - | chr1_1:28104406-28104425 | None:intergenic | 35.0% | |
| GATTGTGAAGAATCAAATGG+AGG | + | chr1_1:28104471-28104490 | Msa0016970:CDS | 35.0% | |
| TGTATACCAAGCAATGAGAT+AGG | + | chr1_1:28104589-28104608 | Msa0016970:CDS | 35.0% | |
| ! | TGCTTGTGGACTACATTTCA+AGG | + | chr1_1:28100938-28100957 | Msa0016970:CDS | 40.0% |
| ! | TGATTTTGCTGGGATGTCTT+CGG | - | chr1_1:28100990-28101009 | None:intergenic | 40.0% |
| !! | GGTCTGATAACTGATTTTGC+TGG | - | chr1_1:28101001-28101020 | None:intergenic | 40.0% |
| !! | TGGAGATTGGTTTGAAAGCT+CGG | - | chr1_1:28101054-28101073 | None:intergenic | 40.0% |
| ACTCCACATTCATACTGTTG+CGG | + | chr1_1:28101355-28101374 | Msa0016970:intron | 40.0% | |
| AATCCGCAACAGTATGAATG+TGG | - | chr1_1:28101361-28101380 | None:intergenic | 40.0% | |
| GCAACCAATATCAAAGTGTG+TGG | + | chr1_1:28101437-28101456 | Msa0016970:intron | 40.0% | |
| AGGATTGAGTCTCTTGGTTA+CGG | - | chr1_1:28101677-28101696 | None:intergenic | 40.0% | |
| TCACCTTGGGAAACACTATT+AGG | - | chr1_1:28101697-28101716 | None:intergenic | 40.0% | |
| ! | GTTTGAAGGTTGATTCACCT+TGG | - | chr1_1:28101711-28101730 | None:intergenic | 40.0% |
| GACAACAAACTAGGGTTTGA+AGG | - | chr1_1:28101725-28101744 | None:intergenic | 40.0% | |
| GCTGAAACAAGGGTTTAGAA+AGG | - | chr1_1:28101786-28101805 | None:intergenic | 40.0% | |
| TATTGAGGTAGAGATAGAGG+GGG | - | chr1_1:28101808-28101827 | None:intergenic | 40.0% | |
| CTATTGAGGTAGAGATAGAG+GGG | - | chr1_1:28101809-28101828 | None:intergenic | 40.0% | |
| GACTATTGAGGTAGAGATAG+AGG | - | chr1_1:28101811-28101830 | None:intergenic | 40.0% | |
| GACCTTGTATCAGACTATTG+AGG | - | chr1_1:28101823-28101842 | None:intergenic | 40.0% | |
| ! | ATTTTTCCAGTGCTTTCCTC+AGG | + | chr1_1:28101957-28101976 | Msa0016970:intron | 40.0% |
| !! | TCACTGATTTGAAGTCAAGG+TGG | - | chr1_1:28102075-28102094 | None:intergenic | 40.0% |
| TGTAAACTTGTGGAGCTACT+TGG | - | chr1_1:28102151-28102170 | None:intergenic | 40.0% | |
| TCCTATGGTTGAAGAGGTTA+GGG | - | chr1_1:28102174-28102193 | None:intergenic | 40.0% | |
| TTCCTATGGTTGAAGAGGTT+AGG | - | chr1_1:28102175-28102194 | None:intergenic | 40.0% | |
| ! | CCTTGAGTAGTTTGTACACA+AGG | - | chr1_1:28102220-28102239 | None:intergenic | 40.0% |
| CCTTGTGTACAAACTACTCA+AGG | + | chr1_1:28102217-28102236 | Msa0016970:intron | 40.0% | |
| CCTAGTGTAGTTTGGATACA+AGG | - | chr1_1:28102316-28102335 | None:intergenic | 40.0% | |
| CCTTGTATCCAAACTACACT+AGG | + | chr1_1:28102313-28102332 | Msa0016970:intron | 40.0% | |
| TGTCTCGTATTGAAGAGGTA+TGG | - | chr1_1:28102366-28102385 | None:intergenic | 40.0% | |
| ! | CAATCACCCTTGGACTTTTA+GGG | + | chr1_1:28102417-28102436 | Msa0016970:intron | 40.0% |
| GGAATTACCCTAAAAGTCCA+AGG | - | chr1_1:28102427-28102446 | None:intergenic | 40.0% | |
| GCTATACATTCTTCAACCTC+CGG | + | chr1_1:28102456-28102475 | Msa0016970:intron | 40.0% | |
| GATTTCTTCATGAAGACGGA+AGG | - | chr1_1:28102486-28102505 | None:intergenic | 40.0% | |
| ! | TCATTTGCTAGTTGAGAGGT+TGG | - | chr1_1:28102595-28102614 | None:intergenic | 40.0% |
| ! | GTACTCATTTGCTAGTTGAG+AGG | - | chr1_1:28102599-28102618 | None:intergenic | 40.0% |
| GTTCAAGGTTGAAGACATAG+TGG | - | chr1_1:28102625-28102644 | None:intergenic | 40.0% | |
| TACTCATGATCTACCTGTTG+AGG | - | chr1_1:28102653-28102672 | None:intergenic | 40.0% | |
| AAGGTGATGTTTCTCACCTT+GGG | - | chr1_1:28102789-28102808 | None:intergenic | 40.0% | |
| ! | AATTGTCTCTGAGGGTTATG+AGG | - | chr1_1:28102848-28102867 | None:intergenic | 40.0% |
| ACCCTCAGAGACAATTTGTA+CGG | + | chr1_1:28102852-28102871 | Msa0016970:intron | 40.0% | |
| TCCGTACAAATTGTCTCTGA+GGG | - | chr1_1:28102856-28102875 | None:intergenic | 40.0% | |
| TTCCGTACAAATTGTCTCTG+AGG | - | chr1_1:28102857-28102876 | None:intergenic | 40.0% | |
| TGTACGGAATTACCAATCTC+CGG | + | chr1_1:28102868-28102887 | Msa0016970:intron | 40.0% | |
| TCACTTCAAGAAGGATTGTC+CGG | - | chr1_1:28102890-28102909 | None:intergenic | 40.0% | |
| ACAAGATGGTCACTTCAAGA+AGG | - | chr1_1:28102899-28102918 | None:intergenic | 40.0% | |
| TCTTGTTACTACTCTTTCCC+CGG | + | chr1_1:28102943-28102962 | Msa0016970:intron | 40.0% | |
| CTAAGTGTTTCAAGAGGGAA+TGG | - | chr1_1:28102984-28103003 | None:intergenic | 40.0% | |
| CATTCCCTCTTGAAACACTT+AGG | + | chr1_1:28102982-28103001 | Msa0016970:intron | 40.0% | |
| AAGGCCTAAGTGTTTCAAGA+GGG | - | chr1_1:28102989-28103008 | None:intergenic | 40.0% | |
| !! | CTTGAGAGTTGATGAAAACG+GGG | - | chr1_1:28103012-28103031 | None:intergenic | 40.0% |
| ! | CAAGGAGTTGACTAAGTTGA+AGG | - | chr1_1:28103036-28103055 | None:intergenic | 40.0% |
| CTTCAACTTAGTCAACTCCT+TGG | + | chr1_1:28103034-28103053 | Msa0016970:intron | 40.0% | |
| !! | AAAAGAAGGCACTGTTACCT+TGG | - | chr1_1:28103084-28103103 | None:intergenic | 40.0% |
| !! | ATTCAAGATGGTGGAGTCAA+AGG | - | chr1_1:28103255-28103274 | None:intergenic | 40.0% |
| ACTCTACTCATTCAAGATGG+TGG | - | chr1_1:28103264-28103283 | None:intergenic | 40.0% | |
| AGTCTTGAGAGAAGTAGCAA+AGG | - | chr1_1:28103372-28103391 | None:intergenic | 40.0% | |
| ! | GAAGTGTGAGAAAGCTTTGA+AGG | - | chr1_1:28103489-28103508 | None:intergenic | 40.0% |
| CAAGTATCATGGGTTCAAAG+TGG | - | chr1_1:28103586-28103605 | None:intergenic | 40.0% | |
| GCAACCAATATCAAAGTGTG+TGG | + | chr1_1:28101437-28101456 | Msa0016970:intron | 40.0% | |
| ! | TCATCATATAGTGGAACGGA+GGG | - | chr1_1:28101581-28101600 | None:intergenic | 40.0% |
| AGGATTGAGTCTCTTGGTTA+CGG | - | chr1_1:28101677-28101696 | None:intergenic | 40.0% | |
| TCACCTTGGGAAACACTATT+AGG | - | chr1_1:28101697-28101716 | None:intergenic | 40.0% | |
| ! | GTTTGAAGGTTGATTCACCT+TGG | - | chr1_1:28101711-28101730 | None:intergenic | 40.0% |
| GACAACAAACTAGGGTTTGA+AGG | - | chr1_1:28101725-28101744 | None:intergenic | 40.0% | |
| GCTGAAACAAGGGTTTAGAA+AGG | - | chr1_1:28101786-28101805 | None:intergenic | 40.0% | |
| TATTGAGGTAGAGATAGAGG+GGG | - | chr1_1:28101808-28101827 | None:intergenic | 40.0% | |
| CTATTGAGGTAGAGATAGAG+GGG | - | chr1_1:28101809-28101828 | None:intergenic | 40.0% | |
| GACTATTGAGGTAGAGATAG+AGG | - | chr1_1:28101811-28101830 | None:intergenic | 40.0% | |
| GACCTTGTATCAGACTATTG+AGG | - | chr1_1:28101823-28101842 | None:intergenic | 40.0% | |
| ! | ATTTTTCCAGTGCTTTCCTC+AGG | + | chr1_1:28101957-28101976 | Msa0016970:intron | 40.0% |
| !! | GGAGATTGGTTTGAAAGCTC+GGG | - | chr1_1:28101053-28101072 | None:intergenic | 45.0% |
| GAGCTTTCAAACCAATCTCC+AGG | + | chr1_1:28101053-28101072 | Msa0016970:CDS | 45.0% | |
| CAACTTGATGTGTGGAGCAA+TGG | + | chr1_1:28101406-28101425 | Msa0016970:intron | 45.0% | |
| AGGTCAATTTGGACCGAACT+GGG | - | chr1_1:28101539-28101558 | None:intergenic | 45.0% | |
| TAGGTCAATTTGGACCGAAC+TGG | - | chr1_1:28101540-28101559 | None:intergenic | 45.0% | |
| GGTCCAAATTGACCTAGTCT+GGG | + | chr1_1:28101544-28101563 | Msa0016970:intron | 45.0% | |
| GTCCAAATTGACCTAGTCTG+GGG | + | chr1_1:28101545-28101564 | Msa0016970:intron | 45.0% | |
| TCCAAATTGACCTAGTCTGG+GGG | + | chr1_1:28101546-28101565 | Msa0016970:intron | 45.0% | |
| ! | CTCATCATATAGTGGAACGG+AGG | - | chr1_1:28101582-28101601 | None:intergenic | 45.0% |
| GGATTTGGGTAGAATTAGGC+GGG | - | chr1_1:28101644-28101663 | None:intergenic | 45.0% | |
| GGGATTTGGGTAGAATTAGG+CGG | - | chr1_1:28101645-28101664 | None:intergenic | 45.0% | |
| GCTGGGATTTGGGTAGAATT+AGG | - | chr1_1:28101648-28101667 | None:intergenic | 45.0% | |
| GGATTGAGTCTCTTGGTTAC+GGG | - | chr1_1:28101676-28101695 | None:intergenic | 45.0% | |
| !! | AGCAATGGTGGTTGATGGTT+TGG | - | chr1_1:28102103-28102122 | None:intergenic | 45.0% |
| GAGGTTAGGGTGTAAACTTG+TGG | - | chr1_1:28102161-28102180 | None:intergenic | 45.0% | |
| ACCCTAACCTCTTCAACCAT+AGG | + | chr1_1:28102170-28102189 | Msa0016970:intron | 45.0% | |
| AGGCATTCCTATGGTTGAAG+AGG | - | chr1_1:28102180-28102199 | None:intergenic | 45.0% | |
| CACAAGGATCTTCAAAAGGG+CGG | - | chr1_1:28102204-28102223 | None:intergenic | 45.0% | |
| ACCTTAACCTCTTCAGCCAT+CGG | + | chr1_1:28102266-28102285 | Msa0016970:intron | 45.0% | |
| TACAAGGATCTTCGAGAAGG+CGG | - | chr1_1:28102300-28102319 | None:intergenic | 45.0% | |
| GGATACAAGGATCTTCGAGA+AGG | - | chr1_1:28102303-28102322 | None:intergenic | 45.0% | |
| GGAGATGTCTCGTATTGAAG+AGG | - | chr1_1:28102371-28102390 | None:intergenic | 45.0% | |
| AAGGTGATCTTCAAGGAAGC+GGG | - | chr1_1:28102392-28102411 | None:intergenic | 45.0% | |
| CAAGGTGATCTTCAAGGAAG+CGG | - | chr1_1:28102393-28102412 | None:intergenic | 45.0% | |
| TGGATGCAAGGTGATCTTCA+AGG | - | chr1_1:28102399-28102418 | None:intergenic | 45.0% | |
| CCTAAAAGTCCAAGGGTGAT+TGG | - | chr1_1:28102419-28102438 | None:intergenic | 45.0% | |
| ! | CCAATCACCCTTGGACTTTT+AGG | + | chr1_1:28102416-28102435 | Msa0016970:intron | 45.0% |
| AGAATGTATAGCACGGCTTG+TGG | - | chr1_1:28102448-28102467 | None:intergenic | 45.0% | |
| TATGCTCTAGTGGTGAGCAA+GGG | - | chr1_1:28102508-28102527 | None:intergenic | 45.0% | |
| TCATGATCTACCTGTTGAGG+TGG | - | chr1_1:28102650-28102669 | None:intergenic | 45.0% | |
| TACTCATGATCAGTCTGGAG+AGG | - | chr1_1:28102688-28102707 | None:intergenic | 45.0% | |
| AGGTGATGTTTCTCACCTTG+GGG | - | chr1_1:28102788-28102807 | None:intergenic | 45.0% | |
| GAAGGTGATGTTTCTCACCT+TGG | - | chr1_1:28102790-28102809 | None:intergenic | 45.0% | |
| !! | TTTGATGGTGTGCTGTTTGG+AGG | - | chr1_1:28102815-28102834 | None:intergenic | 45.0% |
| !! | TGCTTTGATGGTGTGCTGTT+TGG | - | chr1_1:28102818-28102837 | None:intergenic | 45.0% |
| AAGAAGGATTGTCCGGAGAT+TGG | - | chr1_1:28102883-28102902 | None:intergenic | 45.0% | |
| AGTGTTTCAAGAGGGAATGG+TGG | - | chr1_1:28102981-28103000 | None:intergenic | 45.0% | |
| GAAGGCCTAAGTGTTTCAAG+AGG | - | chr1_1:28102990-28103009 | None:intergenic | 45.0% | |
| !! | AGAGTTGATGAAAACGGGGA+AGG | - | chr1_1:28103008-28103027 | None:intergenic | 45.0% |
| !! | TCAAGCAGCTTTGAGAACCA+AGG | - | chr1_1:28103054-28103073 | None:intergenic | 45.0% |
| AGCTGCTTGAACTTCTTCCA+AGG | + | chr1_1:28103064-28103083 | Msa0016970:intron | 45.0% | |
| ACCATGCTCTACGGAAAAGA+AGG | - | chr1_1:28103098-28103117 | None:intergenic | 45.0% | |
| !! | GAGAAAGCTTTGAAGGGTGA+AGG | - | chr1_1:28103482-28103501 | None:intergenic | 45.0% |
| CACAACGAATCCGCAACAAT+TGG | - | chr1_1:28103641-28103660 | None:intergenic | 45.0% | |
| CAACTTGATGTGTGGAGCAA+TGG | + | chr1_1:28101406-28101425 | Msa0016970:intron | 45.0% | |
| AGGTCAATTTGGACCGAACT+GGG | - | chr1_1:28101539-28101558 | None:intergenic | 45.0% | |
| TAGGTCAATTTGGACCGAAC+TGG | - | chr1_1:28101540-28101559 | None:intergenic | 45.0% | |
| GGTCCAAATTGACCTAGTCT+GGG | + | chr1_1:28101544-28101563 | Msa0016970:intron | 45.0% | |
| GTCCAAATTGACCTAGTCTG+GGG | + | chr1_1:28101545-28101564 | Msa0016970:intron | 45.0% | |
| TCCAAATTGACCTAGTCTGG+GGG | + | chr1_1:28101546-28101565 | Msa0016970:intron | 45.0% | |
| ! | CTCATCATATAGTGGAACGG+AGG | - | chr1_1:28101582-28101601 | None:intergenic | 45.0% |
| GGATTTGGGTAGAATTAGGC+GGG | - | chr1_1:28101644-28101663 | None:intergenic | 45.0% | |
| GGGATTTGGGTAGAATTAGG+CGG | - | chr1_1:28101645-28101664 | None:intergenic | 45.0% | |
| GCTGGGATTTGGGTAGAATT+AGG | - | chr1_1:28101648-28101667 | None:intergenic | 45.0% | |
| GGATTGAGTCTCTTGGTTAC+GGG | - | chr1_1:28101676-28101695 | None:intergenic | 45.0% | |
| CCAATGCCTATCTCATTGCT+TGG | - | chr1_1:28104598-28104617 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGCAT+TGG | + | chr1_1:28104595-28104614 | Msa0016970:CDS | 45.0% | |
| CGGTCCAAATTGACCTAGTC+TGG | + | chr1_1:28101543-28101562 | Msa0016970:intron | 50.0% | |
| TCCCCCAGACTAGGTCAATT+TGG | - | chr1_1:28101550-28101569 | None:intergenic | 50.0% | |
| AGTCTCTTGGTTACGGGAAG+AGG | - | chr1_1:28101670-28101689 | None:intergenic | 50.0% | |
| GATAGAGGGGGCTGAAACAA+GGG | - | chr1_1:28101796-28101815 | None:intergenic | 50.0% | |
| AGATAGAGGGGGCTGAAACA+AGG | - | chr1_1:28101797-28101816 | None:intergenic | 50.0% | |
| CTGGAAAAATCGTGCCACGA+TGG | - | chr1_1:28101947-28101966 | None:intergenic | 50.0% | |
| ! | ATGGGTTGAAGCAGATCCTG+AGG | - | chr1_1:28101976-28101995 | None:intergenic | 50.0% |
| AGAGCAGCAATGGTGGTTGA+TGG | - | chr1_1:28102108-28102127 | None:intergenic | 50.0% | |
| AAGGGAAAGAGCAGCAATGG+TGG | - | chr1_1:28102115-28102134 | None:intergenic | 50.0% | |
| AGCAAGGGAAAGAGCAGCAA+TGG | - | chr1_1:28102118-28102137 | None:intergenic | 50.0% | |
| ! | CTTGGTGTAGTGGGAAGCAA+GGG | - | chr1_1:28102133-28102152 | None:intergenic | 50.0% |
| !! | ACTTGGTGTAGTGGGAAGCA+AGG | - | chr1_1:28102134-28102153 | None:intergenic | 50.0% |
| !! | GTGGAGCTACTTGGTGTAGT+GGG | - | chr1_1:28102142-28102161 | None:intergenic | 50.0% |
| !! | TGTGGAGCTACTTGGTGTAG+TGG | - | chr1_1:28102143-28102162 | None:intergenic | 50.0% |
| AGGATCTTCAAAAGGGCGGA+AGG | - | chr1_1:28102200-28102219 | None:intergenic | 50.0% | |
| TCCGATGGCTGAAGAGGTTA+AGG | - | chr1_1:28102270-28102289 | None:intergenic | 50.0% | |
| AGACATTCCGATGGCTGAAG+AGG | - | chr1_1:28102276-28102295 | None:intergenic | 50.0% | |
| ACCTTGCATCCAATCACCCT+TGG | + | chr1_1:28102407-28102426 | Msa0016970:intron | 50.0% | |
| TCCAAGGGTGATTGGATGCA+AGG | - | chr1_1:28102411-28102430 | None:intergenic | 50.0% | |
| !! | CATGAAGACGGAAGGCATTC+CGG | - | chr1_1:28102478-28102497 | None:intergenic | 50.0% |
| CTATGCTCTAGTGGTGAGCA+AGG | - | chr1_1:28102509-28102528 | None:intergenic | 50.0% | |
| GTACGACTATGGAGGACCTT+GGG | - | chr1_1:28102534-28102553 | None:intergenic | 50.0% | |
| CTCCATAGTCGTACCATTCC+CGG | + | chr1_1:28102540-28102559 | Msa0016970:intron | 50.0% | |
| TGATCTACCTGTTGAGGTGG+AGG | - | chr1_1:28102647-28102666 | None:intergenic | 50.0% | |
| TCAACATCATCCTGGAGAGG+CGG | - | chr1_1:28102720-28102739 | None:intergenic | 50.0% | |
| CACTCAACATCATCCTGGAG+AGG | - | chr1_1:28102723-28102742 | None:intergenic | 50.0% | |
| GGTGATGTTTCTCACCTTGG+GGG | - | chr1_1:28102787-28102806 | None:intergenic | 50.0% | |
| !! | GTGTGCTGTTTGGAGGATGA+AGG | - | chr1_1:28102808-28102827 | None:intergenic | 50.0% |
| TGAGGATGCAGGTGCTTTGA+TGG | - | chr1_1:28102830-28102849 | None:intergenic | 50.0% | |
| TCTGAGGGTTATGAGGATGC+AGG | - | chr1_1:28102841-28102860 | None:intergenic | 50.0% | |
| ! | ATGGTGGAGGTAGAGGTAAC+CGG | - | chr1_1:28102965-28102984 | None:intergenic | 50.0% |
| GTTTCAAGAGGGAATGGTGG+AGG | - | chr1_1:28102978-28102997 | None:intergenic | 50.0% | |
| ! | GCCTTCTTTTCCGTAGAGCA+TGG | + | chr1_1:28103094-28103113 | Msa0016970:intron | 50.0% |
| CTCCGTAAGTTGCTCCATGA+TGG | + | chr1_1:28103229-28103248 | Msa0016970:intron | 50.0% | |
| GGCCATCATGGAGCAACTTA+CGG | - | chr1_1:28103234-28103253 | None:intergenic | 50.0% | |
| !! | AGCATCGATGTGGGCAAAGT+TGG | - | chr1_1:28103339-28103358 | None:intergenic | 50.0% |
| CTCTCAAGACTTTATCCCCG+AGG | + | chr1_1:28103381-28103400 | Msa0016970:intron | 50.0% | |
| ! | AGTGCCATTGTCTTGTGCCT+CGG | - | chr1_1:28103401-28103420 | None:intergenic | 50.0% |
| TCCGCTTGTGACATGATGAC+CGG | + | chr1_1:28103449-28103468 | Msa0016970:intron | 50.0% | |
| ACCGGTCATCATGTCACAAG+CGG | - | chr1_1:28103453-28103472 | None:intergenic | 50.0% | |
| GAAGGGTGAAGGTTCGTTAC+CGG | - | chr1_1:28103471-28103490 | None:intergenic | 50.0% | |
| CGGTCCAAATTGACCTAGTC+TGG | + | chr1_1:28101543-28101562 | Msa0016970:intron | 50.0% | |
| TCCCCCAGACTAGGTCAATT+TGG | - | chr1_1:28101550-28101569 | None:intergenic | 50.0% | |
| AGTCTCTTGGTTACGGGAAG+AGG | - | chr1_1:28101670-28101689 | None:intergenic | 50.0% | |
| GATAGAGGGGGCTGAAACAA+GGG | - | chr1_1:28101796-28101815 | None:intergenic | 50.0% | |
| AGATAGAGGGGGCTGAAACA+AGG | - | chr1_1:28101797-28101816 | None:intergenic | 50.0% | |
| CTGGAAAAATCGTGCCACGA+TGG | - | chr1_1:28101947-28101966 | None:intergenic | 50.0% | |
| ACGGGAAGAGGCTGGGATTT+GGG | - | chr1_1:28101658-28101677 | None:intergenic | 55.0% | |
| TACGGGAAGAGGCTGGGATT+TGG | - | chr1_1:28101659-28101678 | None:intergenic | 55.0% | |
| CTTGGTTACGGGAAGAGGCT+GGG | - | chr1_1:28101665-28101684 | None:intergenic | 55.0% | |
| TCTTGGTTACGGGAAGAGGC+TGG | - | chr1_1:28101666-28101685 | None:intergenic | 55.0% | |
| GGAATCGTAACGTGGCACGA+TGG | - | chr1_1:28101926-28101945 | None:intergenic | 55.0% | |
| GCCACGTTACGATTCCATCG+TGG | + | chr1_1:28101930-28101949 | Msa0016970:intron | 55.0% | |
| GCCACGATGGAATCGTAACG+TGG | - | chr1_1:28101934-28101953 | None:intergenic | 55.0% | |
| ! | GCAGATCCTGAGGAAAGCAC+TGG | - | chr1_1:28101966-28101985 | None:intergenic | 55.0% |
| GGATCTGCTTCAACCCATCG+TGG | + | chr1_1:28101978-28101997 | Msa0016970:intron | 55.0% | |
| !! | AAGGGCGGAAGGCATTCCTA+TGG | - | chr1_1:28102189-28102208 | None:intergenic | 55.0% |
| GAAGGCGGAAGACATTCCGA+TGG | - | chr1_1:28102285-28102304 | None:intergenic | 55.0% | |
| ! | CCTTGGGTGCTATGCTCTAG+TGG | - | chr1_1:28102518-28102537 | None:intergenic | 55.0% |
| CCACTAGAGCATAGCACCCA+AGG | + | chr1_1:28102515-28102534 | Msa0016970:intron | 55.0% | |
| GGTACGACTATGGAGGACCT+TGG | - | chr1_1:28102535-28102554 | None:intergenic | 55.0% | |
| CGGGAATGGTACGACTATGG+AGG | - | chr1_1:28102542-28102561 | None:intergenic | 55.0% | |
| TCAGGTGGAGTTGAACACGC+CGG | - | chr1_1:28102562-28102581 | None:intergenic | 55.0% | |
| GTTGGAAGCTCAGCTTCAGG+TGG | - | chr1_1:28102577-28102596 | None:intergenic | 55.0% | |
| GAGGTTGGAAGCTCAGCTTC+AGG | - | chr1_1:28102580-28102599 | None:intergenic | 55.0% | |
| CCTGTTGAGGTGGAGGTTCA+AGG | - | chr1_1:28102640-28102659 | None:intergenic | 55.0% | |
| CCTTGAACCTCCACCTCAAC+AGG | + | chr1_1:28102637-28102656 | Msa0016970:intron | 55.0% | |
| TGATCAGTCTGGAGAGGCAG+TGG | - | chr1_1:28102682-28102701 | None:intergenic | 55.0% | |
| ATTCTTACCACCGCCTCTCC+AGG | + | chr1_1:28102707-28102726 | Msa0016970:intron | 55.0% | |
| TGGTGGAGGTAGAGGTAACC+GGG | - | chr1_1:28102964-28102983 | None:intergenic | 55.0% | |
| ! | AGAGGGAATGGTGGAGGTAG+AGG | - | chr1_1:28102972-28102991 | None:intergenic | 55.0% |
| GGTGGAGTCAAAGGCCATCA+TGG | - | chr1_1:28103246-28103265 | None:intergenic | 55.0% | |
| CTTTGCCCACATCGATGCTG+CGG | + | chr1_1:28103340-28103359 | Msa0016970:intron | 55.0% | |
| !! | ACCAACCGCAGCATCGATGT+GGG | - | chr1_1:28103348-28103367 | None:intergenic | 55.0% |
| !! | AACCAACCGCAGCATCGATG+TGG | - | chr1_1:28103349-28103368 | None:intergenic | 55.0% |
| ATCCCCGAGGCACAAGACAA+TGG | + | chr1_1:28103394-28103413 | Msa0016970:intron | 55.0% | |
| TGCCATTGTCTTGTGCCTCG+GGG | - | chr1_1:28103399-28103418 | None:intergenic | 55.0% | |
| ! | GTGCCATTGTCTTGTGCCTC+GGG | - | chr1_1:28103400-28103419 | None:intergenic | 55.0% |
| GCACAAGACAATGGCACTCC+TGG | + | chr1_1:28103403-28103422 | Msa0016970:intron | 55.0% | |
| !! | GAAGACCGAGATGGTGGACA+AGG | - | chr1_1:28103429-28103448 | None:intergenic | 55.0% |
| ACAAGCGGAGAAGACCGAGA+TGG | - | chr1_1:28103438-28103457 | None:intergenic | 55.0% | |
| ATCCTTTGACCCTTGCCCCA+CGG | + | chr1_1:28103609-28103628 | Msa0016970:intron | 55.0% | |
| ACGGGAAGAGGCTGGGATTT+GGG | - | chr1_1:28101658-28101677 | None:intergenic | 55.0% | |
| TACGGGAAGAGGCTGGGATT+TGG | - | chr1_1:28101659-28101678 | None:intergenic | 55.0% | |
| CTTGGTTACGGGAAGAGGCT+GGG | - | chr1_1:28101665-28101684 | None:intergenic | 55.0% | |
| TCTTGGTTACGGGAAGAGGC+TGG | - | chr1_1:28101666-28101685 | None:intergenic | 55.0% | |
| GGAATCGTAACGTGGCACGA+TGG | - | chr1_1:28101926-28101945 | None:intergenic | 55.0% | |
| GCCACGTTACGATTCCATCG+TGG | + | chr1_1:28101930-28101949 | Msa0016970:intron | 55.0% | |
| GCCACGATGGAATCGTAACG+TGG | - | chr1_1:28101934-28101953 | None:intergenic | 55.0% | |
| ! | GCAGATCCTGAGGAAAGCAC+TGG | - | chr1_1:28101966-28101985 | None:intergenic | 55.0% |
| ! | GTGGGTTGAAGCAGATCCTG+AGG | - | chr1_1:28104249-28104268 | None:intergenic | 55.0% |
| ACTGCTCTCTCCCCCAGACT+AGG | - | chr1_1:28101559-28101578 | None:intergenic | 60.0% | |
| GTGGCACGATGGTACGCTGA+AGG | - | chr1_1:28101915-28101934 | None:intergenic | 60.0% | |
| GGAGAGCAACGTGCCACGAT+GGG | - | chr1_1:28101994-28102013 | None:intergenic | 60.0% | |
| TGGAGAGCAACGTGCCACGA+TGG | - | chr1_1:28101995-28102014 | None:intergenic | 60.0% | |
| TGGCACGTTGCTCTCCATCG+TGG | + | chr1_1:28101998-28102017 | Msa0016970:intron | 60.0% | |
| TCAGGAGCAACGTGCCACGA+TGG | - | chr1_1:28102015-28102034 | None:intergenic | 60.0% | |
| !! | GAAGACGGAAGGCATTCCGG+AGG | - | chr1_1:28102475-28102494 | None:intergenic | 60.0% |
| CGCCGGGAATGGTACGACTA+TGG | - | chr1_1:28102545-28102564 | None:intergenic | 60.0% | |
| GGAGTTGAACACGCCGGGAA+TGG | - | chr1_1:28102556-28102575 | None:intergenic | 60.0% | |
| CAGGTGGAGTTGAACACGCC+GGG | - | chr1_1:28102561-28102580 | None:intergenic | 60.0% | |
| ACATCATCCTGGAGAGGCGG+TGG | - | chr1_1:28102717-28102736 | None:intergenic | 60.0% | |
| TCTACCAGGCATCACCCCCA+AGG | + | chr1_1:28102770-28102789 | Msa0016970:intron | 60.0% | |
| GGTGGAGGTAGAGGTAACCG+GGG | - | chr1_1:28102963-28102982 | None:intergenic | 60.0% | |
| !! | CCTGGCCTTGTCCACCATCT+CGG | + | chr1_1:28103421-28103440 | Msa0016970:intron | 60.0% |
| AGCGGAGAAGACCGAGATGG+TGG | - | chr1_1:28103435-28103454 | None:intergenic | 60.0% | |
| TTTGACCCTTGCCCCACGGT+GGG | + | chr1_1:28103613-28103632 | Msa0016970:intron | 60.0% | |
| AACAATTGGCGCCCACCGTG+GGG | - | chr1_1:28103627-28103646 | None:intergenic | 60.0% | |
| CAACAATTGGCGCCCACCGT+GGG | - | chr1_1:28103628-28103647 | None:intergenic | 60.0% | |
| ACGGTGGGCGCCAATTGTTG+CGG | + | chr1_1:28103628-28103647 | Msa0016970:intron | 60.0% | |
| GTGGCACGATGGTACGCTGA+AGG | - | chr1_1:28101915-28101934 | None:intergenic | 60.0% | |
| ACCCACGTTGCTCTCCATCG+TGG | + | chr1_1:28104263-28104282 | Msa0016970:intron | 60.0% | |
| GCCACGATGGAGAGCAACGT+GGG | - | chr1_1:28102002-28102021 | None:intergenic | 60.0% | |
| TGCCACGATGGAGAGCAACG+TGG | - | chr1_1:28102003-28102022 | None:intergenic | 60.0% | |
| TCAGGAGCAACGTGCCACGA+TGG | - | chr1_1:28102015-28102034 | None:intergenic | 60.0% | |
| CTGGTAGAGCGGTGGTCGTC+TGG | - | chr1_1:28102758-28102777 | None:intergenic | 65.0% | |
| CAGACGACCACCGCTCTACC+AGG | + | chr1_1:28102756-28102775 | Msa0016970:intron | 65.0% | |
| GGTGATGCCTGGTAGAGCGG+TGG | - | chr1_1:28102766-28102785 | None:intergenic | 65.0% | |
| GGGGGTGATGCCTGGTAGAG+CGG | - | chr1_1:28102769-28102788 | None:intergenic | 65.0% | |
| CTCACCTTGGGGGTGATGCC+TGG | - | chr1_1:28102777-28102796 | None:intergenic | 65.0% | |
| GCCCACATCGATGCTGCGGT+TGG | + | chr1_1:28103344-28103363 | Msa0016970:intron | 65.0% | |
| !! | CCGAGATGGTGGACAAGGCC+AGG | - | chr1_1:28103424-28103443 | None:intergenic | 65.0% |
| CACCGTGGGGCAAGGGTCAA+AGG | - | chr1_1:28103614-28103633 | None:intergenic | 65.0% | |
| CTTTGACCCTTGCCCCACGG+TGG | + | chr1_1:28103612-28103631 | Msa0016970:intron | 65.0% | |
| GCAACAATTGGCGCCCACCG+TGG | - | chr1_1:28103629-28103648 | None:intergenic | 65.0% | |
| GCTGCTCTCTCCCCCAGACT+AGG | - | chr1_1:28103832-28103851 | None:intergenic | 65.0% | |
| TGGCGCCCACCGTGGGGCAA+GGG | - | chr1_1:28103621-28103640 | None:intergenic | 75.0% | |
| TTGGCGCCCACCGTGGGGCA+AGG | - | chr1_1:28103622-28103641 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 28100876 | 28104663 | 28100876 | ID=Msa0016970;Name=Msa0016970 |
| chr1_1 | mRNA | 28100876 | 28104663 | 28100876 | ID=Msa0016970-mRNA-1;Parent=Msa0016970;Name=Msa0016970-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|134 |
| chr1_1 | exon | 28100876 | 28101074 | 28100876 | ID=Msa0016970-mRNA-1:exon:9434;Parent=Msa0016970-mRNA-1 |
| chr1_1 | exon | 28104458 | 28104663 | 28104458 | ID=Msa0016970-mRNA-1:exon:9435;Parent=Msa0016970-mRNA-1 |
| chr1_1 | CDS | 28100876 | 28101074 | 28100876 | ID=Msa0016970-mRNA-1:cds;Parent=Msa0016970-mRNA-1 |
| chr1_1 | CDS | 28104458 | 28104663 | 28104458 | ID=Msa0016970-mRNA-1:cds;Parent=Msa0016970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
