Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017080 | sp|Q9FY93|NAC83_ARATH | 34.247 | 146 | 81 | 6 | 13 | 154 | 22 | 156 | 2.75e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0017080 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017080 | MtrunA17_Chr1g0168571 | 88.272 | 324 | 32 | 1 | 1 | 318 | 1 | 324 | 0.0 | 577 |
| Msa0017080 | MtrunA17_Chr1g0174911 | 54.085 | 355 | 93 | 11 | 1 | 318 | 1 | 322 | 5.81e-106 | 312 |
| Msa0017080 | MtrunA17_Chr7g0274971 | 61.538 | 195 | 63 | 1 | 1 | 183 | 1 | 195 | 9.33e-81 | 244 |
| Msa0017080 | MtrunA17_Chr7g0263931 | 32.026 | 153 | 89 | 5 | 13 | 157 | 19 | 164 | 7.87e-15 | 73.9 |
| Msa0017080 | MtrunA17_Chr7g0214071 | 32.639 | 144 | 85 | 4 | 13 | 154 | 23 | 156 | 1.20e-14 | 72.8 |
| Msa0017080 | MtrunA17_Chr4g0018391 | 31.788 | 151 | 94 | 6 | 13 | 160 | 15 | 159 | 1.61e-13 | 70.5 |
| Msa0017080 | MtrunA17_Chr3g0139331 | 26.486 | 185 | 120 | 6 | 13 | 188 | 19 | 196 | 1.13e-11 | 64.7 |
| Msa0017080 | MtrunA17_Chr5g0398971 | 33.557 | 149 | 90 | 7 | 13 | 157 | 15 | 158 | 1.29e-11 | 64.7 |
| Msa0017080 | MtrunA17_Chr8g0384721 | 35.333 | 150 | 79 | 6 | 13 | 154 | 15 | 154 | 1.36e-11 | 64.3 |
| Msa0017080 | MtrunA17_Chr5g0417791 | 31.373 | 153 | 88 | 6 | 13 | 157 | 11 | 154 | 4.28e-11 | 62.4 |
| Msa0017080 | MtrunA17_Chr6g0481091 | 31.210 | 157 | 94 | 8 | 13 | 162 | 14 | 163 | 6.41e-11 | 61.6 |
| Msa0017080 | MtrunA17_Chr8g0364791 | 30.065 | 153 | 93 | 8 | 11 | 157 | 12 | 156 | 6.77e-11 | 62.8 |
| Msa0017080 | MtrunA17_Chr1g0147421 | 30.667 | 150 | 95 | 4 | 13 | 159 | 35 | 178 | 7.60e-11 | 62.4 |
| Msa0017080 | MtrunA17_Chr3g0109821 | 31.613 | 155 | 90 | 7 | 13 | 160 | 14 | 159 | 7.85e-11 | 63.2 |
| Msa0017080 | MtrunA17_Chr8g0384201 | 30.065 | 153 | 93 | 8 | 11 | 157 | 12 | 156 | 9.46e-11 | 62.4 |
| Msa0017080 | MtrunA17_Chr7g0261411 | 28.472 | 144 | 92 | 5 | 13 | 154 | 18 | 152 | 9.82e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017080 | AT5G62380.2 | 32.026 | 153 | 95 | 6 | 13 | 162 | 15 | 161 | 3.81e-14 | 72.8 |
| Msa0017080 | AT5G62380.1 | 32.026 | 153 | 95 | 6 | 13 | 162 | 15 | 161 | 3.81e-14 | 72.8 |
| Msa0017080 | AT2G24430.2 | 31.081 | 148 | 92 | 5 | 13 | 157 | 24 | 164 | 2.57e-13 | 70.1 |
| Msa0017080 | AT2G24430.1 | 31.081 | 148 | 92 | 5 | 13 | 157 | 24 | 164 | 2.57e-13 | 70.1 |
| Msa0017080 | AT5G13180.1 | 34.247 | 146 | 81 | 6 | 13 | 154 | 22 | 156 | 2.79e-13 | 68.9 |
| Msa0017080 | AT3G10480.2 | 33.121 | 157 | 91 | 8 | 13 | 163 | 35 | 183 | 4.37e-13 | 70.1 |
| Msa0017080 | AT5G08790.1 | 32.620 | 187 | 103 | 8 | 3 | 179 | 5 | 178 | 8.43e-13 | 68.2 |
| Msa0017080 | AT3G10480.1 | 32.911 | 158 | 91 | 8 | 13 | 163 | 35 | 184 | 3.03e-12 | 67.4 |
| Msa0017080 | AT5G63790.1 | 33.540 | 161 | 88 | 6 | 3 | 154 | 48 | 198 | 1.29e-11 | 64.7 |
| Msa0017080 | AT5G63790.2 | 33.540 | 161 | 88 | 6 | 3 | 154 | 58 | 208 | 1.41e-11 | 64.7 |
| Msa0017080 | AT5G66300.1 | 29.747 | 158 | 102 | 6 | 13 | 167 | 20 | 171 | 2.25e-11 | 63.9 |
| Msa0017080 | AT3G17730.1 | 30.061 | 163 | 100 | 8 | 13 | 168 | 14 | 169 | 2.75e-11 | 63.2 |
| Msa0017080 | AT3G10490.1 | 31.013 | 158 | 94 | 8 | 13 | 163 | 35 | 184 | 9.99e-11 | 61.2 |
Find 65 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAATAAGTTCTTATAAAA+TGG | 0.129381 | 1_1:+28326848 | None:intergenic |
| AGTGGCAGATTTCTTCTTTA+AGG | 0.216337 | 1_1:+28328372 | None:intergenic |
| CCTCAATTCTTCTTCCAATA+AGG | 0.222490 | 1_1:-28328584 | Msa0017080:CDS |
| TTCAAGAATGGTGATATTAT+TGG | 0.242234 | 1_1:+28328492 | None:intergenic |
| CAAAGAATCCATGGGAGATT+TGG | 0.252767 | 1_1:-28328450 | Msa0017080:CDS |
| TCTGCATAGAACATAATTAT+TGG | 0.253885 | 1_1:+28328044 | None:intergenic |
| TAAGTTGATTACTTGGATTT+TGG | 0.305325 | 1_1:+28327014 | None:intergenic |
| GCACTATTGGACTTGGTAGA+TGG | 0.308744 | 1_1:-28328333 | Msa0017080:CDS |
| CCAGGAACGATTGTCATTCT+TGG | 0.309932 | 1_1:+28327964 | None:intergenic |
| TGGGAGATTTGGGAAGAGTT+TGG | 0.336128 | 1_1:-28328439 | Msa0017080:CDS |
| GCAAGAACAAAGTTCTCTTT+TGG | 0.336878 | 1_1:+28327405 | None:intergenic |
| CCATTGTTAAGTTGATTACT+TGG | 0.345697 | 1_1:+28327007 | None:intergenic |
| AGTGGGTGCGATAACCTTAT+TGG | 0.366373 | 1_1:+28328570 | None:intergenic |
| ATATGTAGCACTTACAGATT+TGG | 0.368326 | 1_1:+28327368 | None:intergenic |
| TAAAATGGATTGGAAATCAT+TGG | 0.368752 | 1_1:+28326863 | None:intergenic |
| AAAGAATCCATGGGAGATTT+GGG | 0.379921 | 1_1:-28328449 | Msa0017080:CDS |
| TCACGCGTAGTTCGCACTAT+TGG | 0.388612 | 1_1:-28328346 | Msa0017080:CDS |
| TATAGGAGTACAATAATGTT+TGG | 0.388726 | 1_1:-28327054 | Msa0017080:intron |
| GAGTACAATAATGTTTGGTT+GGG | 0.392823 | 1_1:-28327049 | Msa0017080:CDS |
| TTCTTTGATAAGCAATCCTT+TGG | 0.396079 | 1_1:-28328173 | Msa0017080:intron |
| CCAAGAATGACAATCGTTCC+TGG | 0.400269 | 1_1:-28327964 | Msa0017080:CDS |
| TAAAATTCATAACAAACCTT+TGG | 0.414530 | 1_1:-28328515 | Msa0017080:CDS |
| GGAGTACAATAATGTTTGGT+TGG | 0.416706 | 1_1:-28327050 | Msa0017080:CDS |
| TTAAGGTTGTAAAGAAGTAT+AGG | 0.426160 | 1_1:+28328389 | None:intergenic |
| GCAAGATCCATCCACCATCT+TGG | 0.430936 | 1_1:+28328215 | None:intergenic |
| CAAGATCCATCCACCATCTT+GGG | 0.431083 | 1_1:+28328216 | None:intergenic |
| ATTCTTGAATACGATTTGTT+CGG | 0.433061 | 1_1:-28328478 | Msa0017080:CDS |
| TAAGTTCTTATAAAATGGAT+TGG | 0.447701 | 1_1:+28326853 | None:intergenic |
| ACAGTGATTGCGGCAGGTCC+AGG | 0.448826 | 1_1:+28327946 | None:intergenic |
| CTTATTGGAAGAAGAATTGA+GGG | 0.451784 | 1_1:+28328585 | None:intergenic |
| CACTATTGGACTTGGTAGAT+GGG | 0.484248 | 1_1:-28328332 | Msa0017080:CDS |
| AATCTCCCATGGATTCTTTG+CGG | 0.489258 | 1_1:+28328453 | None:intergenic |
| AGTACAATAATGTTTGGTTG+GGG | 0.510246 | 1_1:-28327048 | Msa0017080:CDS |
| CCTTATTGGAAGAAGAATTG+AGG | 0.526520 | 1_1:+28328584 | None:intergenic |
| AACTCTTCCCAAATCTCCCA+TGG | 0.530624 | 1_1:+28328442 | None:intergenic |
| GAACAAATCGTATTCAAGAA+TGG | 0.535727 | 1_1:+28328480 | None:intergenic |
| TGAGACTTTGTATTAACCAC+AGG | 0.541279 | 1_1:+28327459 | None:intergenic |
| TGTAGCACTTACAGATTTGG+TGG | 0.543882 | 1_1:+28327371 | None:intergenic |
| TCGGCACCGCAAAGAATCCA+TGG | 0.544845 | 1_1:-28328459 | Msa0017080:CDS |
| GATTGCTTATCAAAGAATTG+TGG | 0.559456 | 1_1:+28328179 | None:intergenic |
| AAGAGTGACACTTCCCAAGA+TGG | 0.562341 | 1_1:-28328229 | Msa0017080:CDS |
| TTGTAGAAGTTCATCATCAG+TGG | 0.566028 | 1_1:+28328552 | None:intergenic |
| TAATACAAAGTCTCAACGTA+AGG | 0.571382 | 1_1:-28327451 | Msa0017080:CDS |
| ACACTTCCCAAGATGGTGGA+TGG | 0.575047 | 1_1:-28328222 | Msa0017080:CDS |
| ATGATGATGCTAGTATGTCT+TGG | 0.583925 | 1_1:-28326952 | Msa0017080:CDS |
| ATGGTGATATTATTGGCCAA+AGG | 0.586567 | 1_1:+28328499 | None:intergenic |
| TGCTTATCAAAGAATTGTGG+AGG | 0.589131 | 1_1:+28328182 | None:intergenic |
| ACAAGTACAGTGATTGCGGC+AGG | 0.590813 | 1_1:+28327940 | None:intergenic |
| CCAAGTAATCAACTTAACAA+TGG | 0.597996 | 1_1:-28327007 | Msa0017080:CDS |
| ATTGGACTTGGTAGATGGGA+AGG | 0.599219 | 1_1:-28328328 | Msa0017080:CDS |
| AGCTGCAACGAAAACAACTC+AGG | 0.602909 | 1_1:+28326929 | None:intergenic |
| AAAGACAAGAACCAAATCCT+CGG | 0.605189 | 1_1:-28328277 | Msa0017080:CDS |
| GCGAACTACGCGTGAGCTAG+TGG | 0.610979 | 1_1:+28328354 | None:intergenic |
| GTAGTTCGCACTATTGGACT+TGG | 0.612695 | 1_1:-28328340 | Msa0017080:CDS |
| TGTAGAAGTTCATCATCAGT+GGG | 0.615614 | 1_1:+28328553 | None:intergenic |
| CGGCACCGCAAAGAATCCAT+GGG | 0.621679 | 1_1:-28328458 | Msa0017080:CDS |
| AGATGGGAAGGTGAAGACGC+TGG | 0.631377 | 1_1:-28328316 | Msa0017080:CDS |
| AGTGACACTTCCCAAGATGG+TGG | 0.639769 | 1_1:-28328226 | Msa0017080:CDS |
| GTAGCACTTACAGATTTGGT+GGG | 0.644008 | 1_1:+28327372 | None:intergenic |
| ACTTACAAGTACAGTGATTG+CGG | 0.645359 | 1_1:+28327936 | None:intergenic |
| GGAGCTTCTCACTCATATCG+TGG | 0.649333 | 1_1:-28328418 | Msa0017080:CDS |
| GTACAATAATGTTTGGTTGG+GGG | 0.656762 | 1_1:-28327047 | Msa0017080:CDS |
| AAAAGAATCAAACTGTCCTG+TGG | 0.676178 | 1_1:-28327475 | Msa0017080:CDS |
| CAGCTGAGAGAGATGTGTGA+AGG | 0.679441 | 1_1:-28326911 | Msa0017080:CDS |
| TGAAGGATGCTTGATCGAAG+AGG | 0.711175 | 1_1:-28326894 | Msa0017080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACAATATAGATTTTTTCT+TGG | - | chr1_1:28327310-28327329 | Msa0017080:intron | 15.0% |
| !!! | TACAATATAGATTTTTTCTT+GGG | - | chr1_1:28327311-28327330 | Msa0017080:intron | 15.0% |
| !!! | ATAAAATCTAATCTTTTTAC+TGG | + | chr1_1:28327568-28327587 | None:intergenic | 15.0% |
| !! | AATATTTCAAGAAGATAAAA+AGG | + | chr1_1:28327646-28327665 | None:intergenic | 15.0% |
| !!! | ATTTTATAAGAACTTATTGT+CGG | - | chr1_1:28328569-28328588 | Msa0017080:CDS | 15.0% |
| !!! | ATACAATATAGATTTTTTCT+TGG | - | chr1_1:28327310-28327329 | Msa0017080:intron | 15.0% |
| !!! | TACAATATAGATTTTTTCTT+GGG | - | chr1_1:28327311-28327330 | Msa0017080:intron | 15.0% |
| !!! | ATAAAATCTAATCTTTTTAC+TGG | + | chr1_1:28327568-28327587 | None:intergenic | 15.0% |
| !! | AATATTTCAAGAAGATAAAA+AGG | + | chr1_1:28327646-28327665 | None:intergenic | 15.0% |
| !!! | ATTTTATAAGAACTTATTGT+CGG | - | chr1_1:28328569-28328588 | Msa0017080:CDS | 15.0% |
| !!! | TGTTATGAATTTTATTGTAG+AGG | + | chr1_1:28326894-28326913 | None:intergenic | 20.0% |
| !! | TAAAATTCATAACAAACCTT+TGG | - | chr1_1:28326900-28326919 | Msa0017080:CDS | 20.0% |
| !! | GTATATTTGCAAAAAAACTA+GGG | + | chr1_1:28327294-28327313 | None:intergenic | 20.0% |
| !! | TGTATATTTGCAAAAAAACT+AGG | + | chr1_1:28327295-28327314 | None:intergenic | 20.0% |
| !!! | TTATGATTTGATTTTGTATC+TGG | - | chr1_1:28327337-28327356 | Msa0017080:intron | 20.0% |
| !!! | TTTGATGCAAATTATTTCTT+TGG | - | chr1_1:28327720-28327739 | Msa0017080:intron | 20.0% |
| !! | GAGTAGTAAATCATTAAAAT+AGG | + | chr1_1:28327796-28327815 | None:intergenic | 20.0% |
| !!! | TAACATTGTTCTTTTTCATT+TGG | - | chr1_1:28327874-28327893 | Msa0017080:intron | 20.0% |
| !! | TAAGGAAAAAGAAAAATATG+TGG | - | chr1_1:28327982-28328001 | Msa0017080:CDS | 20.0% |
| !! | AAAAAGAAAAATATGTGGAA+TGG | - | chr1_1:28327987-28328006 | Msa0017080:CDS | 20.0% |
| !! | TAAGTTCTTATAAAATGGAT+TGG | + | chr1_1:28328565-28328584 | None:intergenic | 20.0% |
| !! | GACAATAAGTTCTTATAAAA+TGG | + | chr1_1:28328570-28328589 | None:intergenic | 20.0% |
| !!! | TGTTATGAATTTTATTGTAG+AGG | + | chr1_1:28326894-28326913 | None:intergenic | 20.0% |
| !! | TAAAATTCATAACAAACCTT+TGG | - | chr1_1:28326900-28326919 | Msa0017080:CDS | 20.0% |
| !! | GTATATTTGCAAAAAAACTA+GGG | + | chr1_1:28327294-28327313 | None:intergenic | 20.0% |
| !! | TGTATATTTGCAAAAAAACT+AGG | + | chr1_1:28327295-28327314 | None:intergenic | 20.0% |
| !!! | TTATGATTTGATTTTGTATC+TGG | - | chr1_1:28327337-28327356 | Msa0017080:intron | 20.0% |
| !!! | TTTGATGCAAATTATTTCTT+TGG | - | chr1_1:28327720-28327739 | Msa0017080:intron | 20.0% |
| !! | GAGTAGTAAATCATTAAAAT+AGG | + | chr1_1:28327796-28327815 | None:intergenic | 20.0% |
| !!! | TAACATTGTTCTTTTTCATT+TGG | - | chr1_1:28327874-28327893 | Msa0017080:intron | 20.0% |
| !! | TAAGGAAAAAGAAAAATATG+TGG | - | chr1_1:28327982-28328001 | Msa0017080:CDS | 20.0% |
| !! | AAAAAGAAAAATATGTGGAA+TGG | - | chr1_1:28327987-28328006 | Msa0017080:CDS | 20.0% |
| !! | TAAGTTCTTATAAAATGGAT+TGG | + | chr1_1:28328565-28328584 | None:intergenic | 20.0% |
| !! | GACAATAAGTTCTTATAAAA+TGG | + | chr1_1:28328570-28328589 | None:intergenic | 20.0% |
| ! | TTCAAGAATGGTGATATTAT+TGG | + | chr1_1:28326926-28326945 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+CGG | - | chr1_1:28326937-28326956 | Msa0017080:CDS | 25.0% |
| !! | TTAAGGTTGTAAAGAAGTAT+AGG | + | chr1_1:28327029-28327048 | None:intergenic | 25.0% |
| ! | TCTGCATAGAACATAATTAT+TGG | + | chr1_1:28327374-28327393 | None:intergenic | 25.0% |
| ! | AATCACATGCTTAATTGATT+AGG | + | chr1_1:28327681-28327700 | None:intergenic | 25.0% |
| !!! | TCTTTTTCATTTGGATTTGT+AGG | - | chr1_1:28327883-28327902 | Msa0017080:intron | 25.0% |
| !!! | CTTTTTCATTTGGATTTGTA+GGG | - | chr1_1:28327884-28327903 | Msa0017080:intron | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1_1:28328334-28328353 | None:intergenic | 25.0% |
| ! | CTCTTTCATTCTCATATTAT+AGG | - | chr1_1:28328344-28328363 | Msa0017080:CDS | 25.0% |
| !! | TATAGGAGTACAATAATGTT+TGG | - | chr1_1:28328361-28328380 | Msa0017080:CDS | 25.0% |
| !!! | TAAGTTGATTACTTGGATTT+TGG | + | chr1_1:28328404-28328423 | None:intergenic | 25.0% |
| ! | AAAAACAAGATTGAAGTAGA+TGG | - | chr1_1:28328432-28328451 | Msa0017080:CDS | 25.0% |
| !!! | TAAAATGGATTGGAAATCAT+TGG | + | chr1_1:28328555-28328574 | None:intergenic | 25.0% |
| ! | TTCAAGAATGGTGATATTAT+TGG | + | chr1_1:28326926-28326945 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+CGG | - | chr1_1:28326937-28326956 | Msa0017080:CDS | 25.0% |
| !! | TTAAGGTTGTAAAGAAGTAT+AGG | + | chr1_1:28327029-28327048 | None:intergenic | 25.0% |
| ! | TCTGCATAGAACATAATTAT+TGG | + | chr1_1:28327374-28327393 | None:intergenic | 25.0% |
| ! | AATCACATGCTTAATTGATT+AGG | + | chr1_1:28327681-28327700 | None:intergenic | 25.0% |
| !!! | TCTTTTTCATTTGGATTTGT+AGG | - | chr1_1:28327883-28327902 | Msa0017080:intron | 25.0% |
| !!! | CTTTTTCATTTGGATTTGTA+GGG | - | chr1_1:28327884-28327903 | Msa0017080:intron | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1_1:28328334-28328353 | None:intergenic | 25.0% |
| ! | CTCTTTCATTCTCATATTAT+AGG | - | chr1_1:28328344-28328363 | Msa0017080:CDS | 25.0% |
| !! | TATAGGAGTACAATAATGTT+TGG | - | chr1_1:28328361-28328380 | Msa0017080:CDS | 25.0% |
| !!! | TAAGTTGATTACTTGGATTT+TGG | + | chr1_1:28328404-28328423 | None:intergenic | 25.0% |
| ! | AAAAACAAGATTGAAGTAGA+TGG | - | chr1_1:28328432-28328451 | Msa0017080:CDS | 25.0% |
| !!! | TAAAATGGATTGGAAATCAT+TGG | + | chr1_1:28328555-28328574 | None:intergenic | 25.0% |
| CTTATTGGAAGAAGAATTGA+GGG | + | chr1_1:28326833-28326852 | None:intergenic | 30.0% | |
| GAACAAATCGTATTCAAGAA+TGG | + | chr1_1:28326938-28326957 | None:intergenic | 30.0% | |
| GATTGCTTATCAAAGAATTG+TGG | + | chr1_1:28327239-28327258 | None:intergenic | 30.0% | |
| TTCTTTGATAAGCAATCCTT+TGG | - | chr1_1:28327242-28327261 | Msa0017080:intron | 30.0% | |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1_1:28327421-28327440 | None:intergenic | 30.0% |
| ! | AAACCCTAAACAGTGTTTTA+CGG | + | chr1_1:28327610-28327629 | None:intergenic | 30.0% |
| TAATACAAAGTCTCAACGTA+AGG | - | chr1_1:28327964-28327983 | Msa0017080:CDS | 30.0% | |
| ATATGTAGCACTTACAGATT+TGG | + | chr1_1:28328050-28328069 | None:intergenic | 30.0% | |
| GAGTACAATAATGTTTGGTT+GGG | - | chr1_1:28328366-28328385 | Msa0017080:CDS | 30.0% | |
| AGTACAATAATGTTTGGTTG+GGG | - | chr1_1:28328367-28328386 | Msa0017080:CDS | 30.0% | |
| !! | CCATTGTTAAGTTGATTACT+TGG | + | chr1_1:28328411-28328430 | None:intergenic | 30.0% |
| CCAAGTAATCAACTTAACAA+TGG | - | chr1_1:28328408-28328427 | Msa0017080:CDS | 30.0% | |
| CTTATTGGAAGAAGAATTGA+GGG | + | chr1_1:28326833-28326852 | None:intergenic | 30.0% | |
| GAACAAATCGTATTCAAGAA+TGG | + | chr1_1:28326938-28326957 | None:intergenic | 30.0% | |
| GATTGCTTATCAAAGAATTG+TGG | + | chr1_1:28327239-28327258 | None:intergenic | 30.0% | |
| TTCTTTGATAAGCAATCCTT+TGG | - | chr1_1:28327242-28327261 | Msa0017080:intron | 30.0% | |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1_1:28327421-28327440 | None:intergenic | 30.0% |
| ! | AAACCCTAAACAGTGTTTTA+CGG | + | chr1_1:28327610-28327629 | None:intergenic | 30.0% |
| TAATACAAAGTCTCAACGTA+AGG | - | chr1_1:28327964-28327983 | Msa0017080:CDS | 30.0% | |
| ATATGTAGCACTTACAGATT+TGG | + | chr1_1:28328050-28328069 | None:intergenic | 30.0% | |
| GAGTACAATAATGTTTGGTT+GGG | - | chr1_1:28328366-28328385 | Msa0017080:CDS | 30.0% | |
| AGTACAATAATGTTTGGTTG+GGG | - | chr1_1:28328367-28328386 | Msa0017080:CDS | 30.0% | |
| !! | CCATTGTTAAGTTGATTACT+TGG | + | chr1_1:28328411-28328430 | None:intergenic | 30.0% |
| CCAAGTAATCAACTTAACAA+TGG | - | chr1_1:28328408-28328427 | Msa0017080:CDS | 30.0% | |
| CCTTATTGGAAGAAGAATTG+AGG | + | chr1_1:28326834-28326853 | None:intergenic | 35.0% | |
| CCTCAATTCTTCTTCCAATA+AGG | - | chr1_1:28326831-28326850 | Msa0017080:CDS | 35.0% | |
| TGTAGAAGTTCATCATCAGT+GGG | + | chr1_1:28326865-28326884 | None:intergenic | 35.0% | |
| TTGTAGAAGTTCATCATCAG+TGG | + | chr1_1:28326866-28326885 | None:intergenic | 35.0% | |
| ATGGTGATATTATTGGCCAA+AGG | + | chr1_1:28326919-28326938 | None:intergenic | 35.0% | |
| AAAGAATCCATGGGAGATTT+GGG | - | chr1_1:28326966-28326985 | Msa0017080:CDS | 35.0% | |
| AGTGGCAGATTTCTTCTTTA+AGG | + | chr1_1:28327046-28327065 | None:intergenic | 35.0% | |
| AAAGACAAGAACCAAATCCT+CGG | - | chr1_1:28327138-28327157 | Msa0017080:intron | 35.0% | |
| TGCTTATCAAAGAATTGTGG+AGG | + | chr1_1:28327236-28327255 | None:intergenic | 35.0% | |
| AAAACTAGGGCTACAAATCT+TGG | + | chr1_1:28327281-28327300 | None:intergenic | 35.0% | |
| !! | TTTTGTATCTGGTTTCTTGC+AGG | - | chr1_1:28327348-28327367 | Msa0017080:intron | 35.0% |
| ACTTACAAGTACAGTGATTG+CGG | + | chr1_1:28327482-28327501 | None:intergenic | 35.0% | |
| TTTCCCGTAAAACACTGTTT+AGG | - | chr1_1:28327603-28327622 | Msa0017080:intron | 35.0% | |
| TTCCCGTAAAACACTGTTTA+GGG | - | chr1_1:28327604-28327623 | Msa0017080:intron | 35.0% | |
| ! | AACCCTAAACAGTGTTTTAC+GGG | + | chr1_1:28327609-28327628 | None:intergenic | 35.0% |
| ! | GGACAGTTTGATTCTTTTGT+TGG | + | chr1_1:28327938-28327957 | None:intergenic | 35.0% |
| AAAAGAATCAAACTGTCCTG+TGG | - | chr1_1:28327940-28327959 | Msa0017080:intron | 35.0% | |
| TGAGACTTTGTATTAACCAC+AGG | + | chr1_1:28327959-28327978 | None:intergenic | 35.0% | |
| ! | GCAAGAACAAAGTTCTCTTT+TGG | + | chr1_1:28328013-28328032 | None:intergenic | 35.0% |
| GGAGTACAATAATGTTTGGT+TGG | - | chr1_1:28328365-28328384 | Msa0017080:CDS | 35.0% | |
| GTACAATAATGTTTGGTTGG+GGG | - | chr1_1:28328368-28328387 | Msa0017080:CDS | 35.0% | |
| ! | ATGATGATGCTAGTATGTCT+TGG | - | chr1_1:28328463-28328482 | Msa0017080:CDS | 35.0% |
| CCTTATTGGAAGAAGAATTG+AGG | + | chr1_1:28326834-28326853 | None:intergenic | 35.0% | |
| CCTCAATTCTTCTTCCAATA+AGG | - | chr1_1:28326831-28326850 | Msa0017080:CDS | 35.0% | |
| TGTAGAAGTTCATCATCAGT+GGG | + | chr1_1:28326865-28326884 | None:intergenic | 35.0% | |
| TTGTAGAAGTTCATCATCAG+TGG | + | chr1_1:28326866-28326885 | None:intergenic | 35.0% | |
| ATGGTGATATTATTGGCCAA+AGG | + | chr1_1:28326919-28326938 | None:intergenic | 35.0% | |
| AAAGAATCCATGGGAGATTT+GGG | - | chr1_1:28326966-28326985 | Msa0017080:CDS | 35.0% | |
| AGTGGCAGATTTCTTCTTTA+AGG | + | chr1_1:28327046-28327065 | None:intergenic | 35.0% | |
| AAAGACAAGAACCAAATCCT+CGG | - | chr1_1:28327138-28327157 | Msa0017080:intron | 35.0% | |
| TGCTTATCAAAGAATTGTGG+AGG | + | chr1_1:28327236-28327255 | None:intergenic | 35.0% | |
| AAAACTAGGGCTACAAATCT+TGG | + | chr1_1:28327281-28327300 | None:intergenic | 35.0% | |
| !! | TTTTGTATCTGGTTTCTTGC+AGG | - | chr1_1:28327348-28327367 | Msa0017080:intron | 35.0% |
| ACTTACAAGTACAGTGATTG+CGG | + | chr1_1:28327482-28327501 | None:intergenic | 35.0% | |
| TTTCCCGTAAAACACTGTTT+AGG | - | chr1_1:28327603-28327622 | Msa0017080:intron | 35.0% | |
| TTCCCGTAAAACACTGTTTA+GGG | - | chr1_1:28327604-28327623 | Msa0017080:intron | 35.0% | |
| ! | AACCCTAAACAGTGTTTTAC+GGG | + | chr1_1:28327609-28327628 | None:intergenic | 35.0% |
| ! | GGACAGTTTGATTCTTTTGT+TGG | + | chr1_1:28327938-28327957 | None:intergenic | 35.0% |
| AAAAGAATCAAACTGTCCTG+TGG | - | chr1_1:28327940-28327959 | Msa0017080:intron | 35.0% | |
| TGAGACTTTGTATTAACCAC+AGG | + | chr1_1:28327959-28327978 | None:intergenic | 35.0% | |
| ! | GCAAGAACAAAGTTCTCTTT+TGG | + | chr1_1:28328013-28328032 | None:intergenic | 35.0% |
| GGAGTACAATAATGTTTGGT+TGG | - | chr1_1:28328365-28328384 | Msa0017080:CDS | 35.0% | |
| GTACAATAATGTTTGGTTGG+GGG | - | chr1_1:28328368-28328387 | Msa0017080:CDS | 35.0% | |
| ! | ATGATGATGCTAGTATGTCT+TGG | - | chr1_1:28328463-28328482 | Msa0017080:CDS | 35.0% |
| AATCTCCCATGGATTCTTTG+CGG | + | chr1_1:28326965-28326984 | None:intergenic | 40.0% | |
| CAAAGAATCCATGGGAGATT+TGG | - | chr1_1:28326965-28326984 | Msa0017080:CDS | 40.0% | |
| ! | CACTATTGGACTTGGTAGAT+GGG | - | chr1_1:28327083-28327102 | Msa0017080:intron | 40.0% |
| !!! | GTTTTTTCATGCCGAGGATT+TGG | + | chr1_1:28327152-28327171 | None:intergenic | 40.0% |
| !!! | GAAAACGTTTTTTCATGCCG+AGG | + | chr1_1:28327158-28327177 | None:intergenic | 40.0% |
| GCTACAAATCTTGGAACCTA+GGG | + | chr1_1:28327272-28327291 | None:intergenic | 40.0% | |
| CCAAAGCATAACATTCTTGC+AGG | + | chr1_1:28327512-28327531 | None:intergenic | 40.0% | |
| CCTGCAAGAATGTTATGCTT+TGG | - | chr1_1:28327509-28327528 | Msa0017080:CDS | 40.0% | |
| ! | GTAGCACTTACAGATTTGGT+GGG | + | chr1_1:28328046-28328065 | None:intergenic | 40.0% |
| TGTAGCACTTACAGATTTGG+TGG | + | chr1_1:28328047-28328066 | None:intergenic | 40.0% | |
| AATCTCCCATGGATTCTTTG+CGG | + | chr1_1:28326965-28326984 | None:intergenic | 40.0% | |
| CAAAGAATCCATGGGAGATT+TGG | - | chr1_1:28326965-28326984 | Msa0017080:CDS | 40.0% | |
| ! | CACTATTGGACTTGGTAGAT+GGG | - | chr1_1:28327083-28327102 | Msa0017080:intron | 40.0% |
| !!! | GTTTTTTCATGCCGAGGATT+TGG | + | chr1_1:28327152-28327171 | None:intergenic | 40.0% |
| !!! | GAAAACGTTTTTTCATGCCG+AGG | + | chr1_1:28327158-28327177 | None:intergenic | 40.0% |
| GCTACAAATCTTGGAACCTA+GGG | + | chr1_1:28327272-28327291 | None:intergenic | 40.0% | |
| CCAAAGCATAACATTCTTGC+AGG | + | chr1_1:28327512-28327531 | None:intergenic | 40.0% | |
| CCTGCAAGAATGTTATGCTT+TGG | - | chr1_1:28327509-28327528 | Msa0017080:CDS | 40.0% | |
| ! | GTAGCACTTACAGATTTGGT+GGG | + | chr1_1:28328046-28328065 | None:intergenic | 40.0% |
| TGTAGCACTTACAGATTTGG+TGG | + | chr1_1:28328047-28328066 | None:intergenic | 40.0% | |
| AGTGGGTGCGATAACCTTAT+TGG | + | chr1_1:28326848-28326867 | None:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+TGG | + | chr1_1:28326976-28326995 | None:intergenic | 45.0% | |
| TGGGAGATTTGGGAAGAGTT+TGG | - | chr1_1:28326976-28326995 | Msa0017080:CDS | 45.0% | |
| GTAGTTCGCACTATTGGACT+TGG | - | chr1_1:28327075-28327094 | Msa0017080:intron | 45.0% | |
| ! | GCACTATTGGACTTGGTAGA+TGG | - | chr1_1:28327082-28327101 | Msa0017080:intron | 45.0% |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1_1:28327087-28327106 | Msa0017080:intron | 45.0% |
| AAGAGTGACACTTCCCAAGA+TGG | - | chr1_1:28327186-28327205 | Msa0017080:intron | 45.0% | |
| CAAGATCCATCCACCATCTT+GGG | + | chr1_1:28327202-28327221 | None:intergenic | 45.0% | |
| GGCTACAAATCTTGGAACCT+AGG | + | chr1_1:28327273-28327292 | None:intergenic | 45.0% | |
| CCAGGAACGATTGTCATTCT+TGG | + | chr1_1:28327454-28327473 | None:intergenic | 45.0% | |
| CCAAGAATGACAATCGTTCC+TGG | - | chr1_1:28327451-28327470 | Msa0017080:CDS | 45.0% | |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1_1:28328489-28328508 | None:intergenic | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1_1:28328521-28328540 | Msa0017080:CDS | 45.0% | |
| AGTGGGTGCGATAACCTTAT+TGG | + | chr1_1:28326848-28326867 | None:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+TGG | + | chr1_1:28326976-28326995 | None:intergenic | 45.0% | |
| TGGGAGATTTGGGAAGAGTT+TGG | - | chr1_1:28326976-28326995 | Msa0017080:CDS | 45.0% | |
| GTAGTTCGCACTATTGGACT+TGG | - | chr1_1:28327075-28327094 | Msa0017080:intron | 45.0% | |
| ! | GCACTATTGGACTTGGTAGA+TGG | - | chr1_1:28327082-28327101 | Msa0017080:intron | 45.0% |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1_1:28327087-28327106 | Msa0017080:intron | 45.0% |
| AAGAGTGACACTTCCCAAGA+TGG | - | chr1_1:28327186-28327205 | Msa0017080:intron | 45.0% | |
| CAAGATCCATCCACCATCTT+GGG | + | chr1_1:28327202-28327221 | None:intergenic | 45.0% | |
| GGCTACAAATCTTGGAACCT+AGG | + | chr1_1:28327273-28327292 | None:intergenic | 45.0% | |
| CCAGGAACGATTGTCATTCT+TGG | + | chr1_1:28327454-28327473 | None:intergenic | 45.0% | |
| CCAAGAATGACAATCGTTCC+TGG | - | chr1_1:28327451-28327470 | Msa0017080:CDS | 45.0% | |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1_1:28328489-28328508 | None:intergenic | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1_1:28328521-28328540 | Msa0017080:CDS | 45.0% | |
| GGAGCTTCTCACTCATATCG+TGG | - | chr1_1:28326997-28327016 | Msa0017080:CDS | 50.0% | |
| TCACGCGTAGTTCGCACTAT+TGG | - | chr1_1:28327069-28327088 | Msa0017080:intron | 50.0% | |
| AGTGACACTTCCCAAGATGG+TGG | - | chr1_1:28327189-28327208 | Msa0017080:intron | 50.0% | |
| !! | ACACTTCCCAAGATGGTGGA+TGG | - | chr1_1:28327193-28327212 | Msa0017080:intron | 50.0% |
| GCAAGATCCATCCACCATCT+TGG | + | chr1_1:28327203-28327222 | None:intergenic | 50.0% | |
| GCAATCCTTTGGTAAGCCCT+AGG | - | chr1_1:28327253-28327272 | Msa0017080:intron | 50.0% | |
| TGGAACCTAGGGCTTACCAA+AGG | + | chr1_1:28327261-28327280 | None:intergenic | 50.0% | |
| ACAAGTACAGTGATTGCGGC+AGG | + | chr1_1:28327478-28327497 | None:intergenic | 50.0% | |
| CAGCTGAGAGAGATGTGTGA+AGG | - | chr1_1:28328504-28328523 | Msa0017080:CDS | 50.0% | |
| GGAGCTTCTCACTCATATCG+TGG | - | chr1_1:28326997-28327016 | Msa0017080:CDS | 50.0% | |
| TCACGCGTAGTTCGCACTAT+TGG | - | chr1_1:28327069-28327088 | Msa0017080:intron | 50.0% | |
| AGTGACACTTCCCAAGATGG+TGG | - | chr1_1:28327189-28327208 | Msa0017080:intron | 50.0% | |
| !! | ACACTTCCCAAGATGGTGGA+TGG | - | chr1_1:28327193-28327212 | Msa0017080:intron | 50.0% |
| GCAAGATCCATCCACCATCT+TGG | + | chr1_1:28327203-28327222 | None:intergenic | 50.0% | |
| GCAATCCTTTGGTAAGCCCT+AGG | - | chr1_1:28327253-28327272 | Msa0017080:intron | 50.0% | |
| TGGAACCTAGGGCTTACCAA+AGG | + | chr1_1:28327261-28327280 | None:intergenic | 50.0% | |
| ACAAGTACAGTGATTGCGGC+AGG | + | chr1_1:28327478-28327497 | None:intergenic | 50.0% | |
| CAGCTGAGAGAGATGTGTGA+AGG | - | chr1_1:28328504-28328523 | Msa0017080:CDS | 50.0% | |
| TCGGCACCGCAAAGAATCCA+TGG | - | chr1_1:28326956-28326975 | Msa0017080:CDS | 55.0% | |
| CGGCACCGCAAAGAATCCAT+GGG | - | chr1_1:28326957-28326976 | Msa0017080:CDS | 55.0% | |
| AGATGGGAAGGTGAAGACGC+TGG | - | chr1_1:28327099-28327118 | Msa0017080:intron | 55.0% | |
| TCGGCACCGCAAAGAATCCA+TGG | - | chr1_1:28326956-28326975 | Msa0017080:CDS | 55.0% | |
| CGGCACCGCAAAGAATCCAT+GGG | - | chr1_1:28326957-28326976 | Msa0017080:CDS | 55.0% | |
| AGATGGGAAGGTGAAGACGC+TGG | - | chr1_1:28327099-28327118 | Msa0017080:intron | 55.0% | |
| GCGAACTACGCGTGAGCTAG+TGG | + | chr1_1:28327064-28327083 | None:intergenic | 60.0% | |
| ACAGTGATTGCGGCAGGTCC+AGG | + | chr1_1:28327472-28327491 | None:intergenic | 60.0% | |
| GCGAACTACGCGTGAGCTAG+TGG | + | chr1_1:28327064-28327083 | None:intergenic | 60.0% | |
| ACAGTGATTGCGGCAGGTCC+AGG | + | chr1_1:28327472-28327491 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 28326826 | 28328611 | 28326826 | ID=Msa0017080;Name=Msa0017080 |
| chr1_1 | mRNA | 28326826 | 28328611 | 28326826 | ID=Msa0017080-mRNA-1;Parent=Msa0017080;Name=Msa0017080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|4|0|319 |
| chr1_1 | exon | 28328174 | 28328611 | 28328174 | ID=Msa0017080-mRNA-1:exon:9501;Parent=Msa0017080-mRNA-1 |
| chr1_1 | exon | 28327942 | 28328067 | 28327942 | ID=Msa0017080-mRNA-1:exon:9500;Parent=Msa0017080-mRNA-1 |
| chr1_1 | exon | 28327383 | 28327532 | 28327383 | ID=Msa0017080-mRNA-1:exon:9499;Parent=Msa0017080-mRNA-1 |
| chr1_1 | exon | 28326826 | 28327071 | 28326826 | ID=Msa0017080-mRNA-1:exon:9498;Parent=Msa0017080-mRNA-1 |
| chr1_1 | CDS | 28328174 | 28328611 | 28328174 | ID=Msa0017080-mRNA-1:cds;Parent=Msa0017080-mRNA-1 |
| chr1_1 | CDS | 28327942 | 28328067 | 28327942 | ID=Msa0017080-mRNA-1:cds;Parent=Msa0017080-mRNA-1 |
| chr1_1 | CDS | 28327383 | 28327532 | 28327383 | ID=Msa0017080-mRNA-1:cds;Parent=Msa0017080-mRNA-1 |
| chr1_1 | CDS | 28326826 | 28327071 | 28326826 | ID=Msa0017080-mRNA-1:cds;Parent=Msa0017080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
