Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0017400 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017400 | MtrunA17_Chr1g0169171 | 80.236 | 339 | 30 | 3 | 34 | 372 | 1 | 302 | 5.11e-174 | 486 |
| Msa0017400 | MtrunA17_Chr1g0169081 | 57.838 | 370 | 105 | 5 | 5 | 371 | 2 | 323 | 4.92e-129 | 373 |
| Msa0017400 | MtrunA17_Chr1g0169161 | 68.391 | 174 | 54 | 1 | 198 | 371 | 161 | 333 | 9.84e-83 | 255 |
| Msa0017400 | MtrunA17_Chr3g0125151 | 81.600 | 125 | 21 | 1 | 246 | 370 | 1 | 123 | 3.07e-71 | 218 |
| Msa0017400 | MtrunA17_Chr3g0125161 | 79.545 | 132 | 27 | 0 | 2 | 133 | 13 | 144 | 1.28e-64 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017400 | AT3G53310.1 | 29.412 | 102 | 70 | 1 | 1 | 102 | 1 | 100 | 4.32e-11 | 63.5 |
| Msa0017400 | AT5G57720.1 | 21.751 | 377 | 208 | 13 | 1 | 370 | 3 | 299 | 9.90e-11 | 62.8 |
Find 69 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCATTGTTAGTCATAATT+TGG | 0.199161 | 1_1:+28798763 | None:intergenic |
| TATAAATAACATACATGTTT+TGG | 0.264573 | 1_1:+28797915 | None:intergenic |
| ATTTCATCATCTTCAAGATT+TGG | 0.287026 | 1_1:+28797757 | None:intergenic |
| AGGAAGACTTTGAAGAAGTT+AGG | 0.307444 | 1_1:+28798732 | None:intergenic |
| TGCTAAGGGTGCACGTTGTT+AGG | 0.311521 | 1_1:-28797054 | Msa0017400:CDS |
| GCATAGAAGTATGGATTTCC+TGG | 0.326303 | 1_1:+28797712 | None:intergenic |
| AGAGAGGAGAAATACGTAAA+TGG | 0.332365 | 1_1:-28797192 | Msa0017400:CDS |
| CACTTCCTCTATGATCTCTT+AGG | 0.351749 | 1_1:+28798448 | None:intergenic |
| TGACAACAGACCAAACATAT+TGG | 0.391564 | 1_1:-28797680 | Msa0017400:intron |
| AAGAACTAAACCAATATGTT+TGG | 0.413033 | 1_1:+28797670 | None:intergenic |
| TTCAAAACAAAGGCTGTTGA+AGG | 0.442905 | 1_1:-28798478 | Msa0017400:CDS |
| TTGCGGCAATACATGATGAT+AGG | 0.447437 | 1_1:+28797237 | None:intergenic |
| GCTAAGGGTGCACGTTGTTA+GGG | 0.450128 | 1_1:-28797053 | Msa0017400:CDS |
| TACTAATACGATGGAGGATG+AGG | 0.463591 | 1_1:-28798229 | Msa0017400:CDS |
| TACGATGGAGGATGAGGAAG+AGG | 0.464381 | 1_1:-28798223 | Msa0017400:CDS |
| CCTTGCAGTGGCAACATACA+AGG | 0.465539 | 1_1:+28797409 | None:intergenic |
| GAAAATCAATTGAAATGCTA+AGG | 0.471162 | 1_1:-28797069 | Msa0017400:CDS |
| AATAAAGTTTGTTGCCGATA+GGG | 0.473847 | 1_1:+28798406 | None:intergenic |
| GGAAGACTTTGAAGAAGTTA+GGG | 0.478785 | 1_1:+28798733 | None:intergenic |
| CATGTCAAAGTGCGCCCTAT+CGG | 0.483624 | 1_1:-28798420 | Msa0017400:CDS |
| CACACATTGAGGATAGTTCA+AGG | 0.489279 | 1_1:+28798283 | None:intergenic |
| GATATTGGTTTAGGGAGCAT+TGG | 0.500691 | 1_1:-28797796 | Msa0017400:intron |
| GAGGATGAGGAAGAGGAAGA+TGG | 0.501826 | 1_1:-28798216 | Msa0017400:CDS |
| GAGATCATAGAGGAAGTGAT+TGG | 0.510228 | 1_1:-28798443 | Msa0017400:CDS |
| AAAGAAGCACTCTGATAGAA+TGG | 0.512843 | 1_1:-28798706 | Msa0017400:intron |
| AGGAATAAAGGAGATGGAAA+GGG | 0.516562 | 1_1:-28797976 | Msa0017400:CDS |
| CGATGACATTGATGAGGAGA+AGG | 0.528321 | 1_1:-28798124 | Msa0017400:CDS |
| AAGGAATAAAGGAGATGGAA+AGG | 0.528969 | 1_1:-28797977 | Msa0017400:CDS |
| ATCAGCTTCACAAAAGCCGT+TGG | 0.529706 | 1_1:+28798504 | None:intergenic |
| GAAATACGTAAATGGAAAGA+TGG | 0.532076 | 1_1:-28797184 | Msa0017400:CDS |
| GAAGAAGTTAGGGAACTCCT+TGG | 0.540851 | 1_1:+28798743 | None:intergenic |
| GCCGAGTATTTGTGCGAGGG+TGG | 0.540995 | 1_1:-28797162 | Msa0017400:CDS |
| CCCACCCTCGCACAAATACT+CGG | 0.548148 | 1_1:+28797161 | None:intergenic |
| CGATGATGTTGATGAGGAGG+AGG | 0.548787 | 1_1:-28798034 | Msa0017400:CDS |
| TCAGCTTCACAAAAGCCGTT+GGG | 0.551363 | 1_1:+28798505 | None:intergenic |
| GCTGAAATGTATATTCAGCC+AGG | 0.552692 | 1_1:-28797730 | Msa0017400:CDS |
| TATCAGAGTGCTTCTTTGTG+AGG | 0.557625 | 1_1:+28798712 | None:intergenic |
| AAATAAAGTTTGTTGCCGAT+AGG | 0.559250 | 1_1:+28798405 | None:intergenic |
| AAAGATGAAGGTGATGGACG+AGG | 0.565087 | 1_1:-28798259 | Msa0017400:CDS |
| CTCAATGTGTGAAAAGATGA+AGG | 0.571790 | 1_1:-28798271 | Msa0017400:CDS |
| TATTTCGAAGAATGTCATCA+AGG | 0.573351 | 1_1:-28797463 | Msa0017400:CDS |
| TGTGAACTTGTGTTGCATGA+AGG | 0.573986 | 1_1:-28797091 | Msa0017400:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.576526 | 1_1:-28797409 | Msa0017400:intron |
| GGAGGAAAATACTAATACGA+TGG | 0.576880 | 1_1:-28798238 | Msa0017400:CDS |
| CATTGATGAGGAGAAGGATG+AGG | 0.577439 | 1_1:-28798118 | Msa0017400:CDS |
| AAAATCAATTGAAATGCTAA+GGG | 0.582870 | 1_1:-28797068 | Msa0017400:CDS |
| TCACAGGATGTTCAAAGTAA+CGG | 0.587767 | 1_1:-28797268 | Msa0017400:intron |
| ATGGTAGATGAAGAAGAAGA+TGG | 0.592976 | 1_1:-28798066 | Msa0017400:CDS |
| TGATGATTACACAATGGTAG+AGG | 0.597750 | 1_1:-28798166 | Msa0017400:CDS |
| AGCTGATGCTTTCAAAACAA+AGG | 0.597947 | 1_1:-28798488 | Msa0017400:CDS |
| CCGAGTATTTGTGCGAGGGT+GGG | 0.600057 | 1_1:-28797161 | Msa0017400:CDS |
| ACAAAACATATTGAAAAGAG+AGG | 0.601836 | 1_1:-28797208 | Msa0017400:CDS |
| TCTGCTGCAGCTTATCCCAA+CGG | 0.606121 | 1_1:-28798520 | Msa0017400:intron |
| TTTCAATGTGTGTGAAAACA+AGG | 0.612200 | 1_1:+28798328 | None:intergenic |
| GGAAAATACTAATACGATGG+AGG | 0.618407 | 1_1:-28798235 | Msa0017400:CDS |
| ATAACAATTATACCTTGCAG+TGG | 0.625581 | 1_1:+28797397 | None:intergenic |
| TAACGATGATGTTGATGAGG+AGG | 0.631678 | 1_1:-28798037 | Msa0017400:CDS |
| TTTATCCTAAGAGATCATAG+AGG | 0.632452 | 1_1:-28798453 | Msa0017400:CDS |
| TGATAACGATGATGTTGATG+AGG | 0.638893 | 1_1:-28798040 | Msa0017400:CDS |
| GATGAAGGTGATGGACGAGG+AGG | 0.642889 | 1_1:-28798256 | Msa0017400:CDS |
| AATTATGACTAACAATGCCA+AGG | 0.645414 | 1_1:-28798760 | Msa0017400:exon |
| GTGTGAAAAGATGAAGGTGA+TGG | 0.648653 | 1_1:-28798265 | Msa0017400:CDS |
| GATGGCCGAGTATTTGTGCG+AGG | 0.649148 | 1_1:-28797166 | Msa0017400:CDS |
| ATGGCCGAGTATTTGTGCGA+GGG | 0.662338 | 1_1:-28797165 | Msa0017400:CDS |
| CTTGCAGTGGCAACATACAA+GGG | 0.670891 | 1_1:+28797410 | None:intergenic |
| ACAATGGTAGAGGAAGAAGA+TGG | 0.676224 | 1_1:-28798156 | Msa0017400:CDS |
| TGATAACGATGACATTGATG+AGG | 0.717721 | 1_1:-28798130 | Msa0017400:CDS |
| TGATGATGATGATTACACAA+TGG | 0.769323 | 1_1:-28798085 | Msa0017400:CDS |
| TGATGATGATGATTACACAA+TGG | 0.769323 | 1_1:-28798172 | Msa0017400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAATGAAAGAAAAA+AGG | - | chr1_1:28797827-28797846 | Msa0017400:intron | 10.0% |
| !! | ATATAATAATGAAAGAAAAA+AGG | - | chr1_1:28797827-28797846 | Msa0017400:intron | 10.0% |
| !! | TAATGTATAATAATATTTGG+AGG | + | chr1_1:28797169-28797188 | None:intergenic | 15.0% |
| !!! | TATAAATAACATACATGTTT+TGG | + | chr1_1:28797911-28797930 | None:intergenic | 15.0% |
| !! | TAATGTATAATAATATTTGG+AGG | + | chr1_1:28797169-28797188 | None:intergenic | 15.0% |
| !!! | TATAAATAACATACATGTTT+TGG | + | chr1_1:28797911-28797930 | None:intergenic | 15.0% |
| !!! | AACAAACTTTATTTTGATGA+TGG | - | chr1_1:28797427-28797446 | Msa0017400:CDS | 20.0% |
| !! | ATGAAAGAAAAAAGGAATAA+AGG | - | chr1_1:28797835-28797854 | Msa0017400:intron | 20.0% |
| !! | ATTTACCTAATGATTGATAT+TGG | - | chr1_1:28798012-28798031 | Msa0017400:CDS | 20.0% |
| !!! | TAATGATTGATATTGGTTTA+GGG | - | chr1_1:28798019-28798038 | Msa0017400:CDS | 20.0% |
| !! | AAAATCAATTGAAATGCTAA+GGG | - | chr1_1:28798755-28798774 | Msa0017400:CDS | 20.0% |
| !!! | AACAAACTTTATTTTGATGA+TGG | - | chr1_1:28797427-28797446 | Msa0017400:CDS | 20.0% |
| !! | ATGAAAGAAAAAAGGAATAA+AGG | - | chr1_1:28797835-28797854 | Msa0017400:intron | 20.0% |
| !! | ATTTACCTAATGATTGATAT+TGG | - | chr1_1:28798012-28798031 | Msa0017400:CDS | 20.0% |
| !!! | TAATGATTGATATTGGTTTA+GGG | - | chr1_1:28798019-28798038 | Msa0017400:CDS | 20.0% |
| !! | AAAATCAATTGAAATGCTAA+GGG | - | chr1_1:28798755-28798774 | Msa0017400:CDS | 20.0% |
| !!! | AACTTTATTTTGATGATGGT+TGG | - | chr1_1:28797431-28797450 | Msa0017400:CDS | 25.0% |
| ! | TATCATAATAGAGAAGAAGA+AGG | - | chr1_1:28797929-28797948 | Msa0017400:CDS | 25.0% |
| ! | CTAAACCAATATCAATCATT+AGG | + | chr1_1:28798020-28798039 | None:intergenic | 25.0% |
| !!! | CTAATGATTGATATTGGTTT+AGG | - | chr1_1:28798018-28798037 | Msa0017400:CDS | 25.0% |
| ! | ATTTCATCATCTTCAAGATT+TGG | + | chr1_1:28798069-28798088 | None:intergenic | 25.0% |
| !!! | TATTGTTTTGCATAGAAGTA+TGG | + | chr1_1:28798123-28798142 | None:intergenic | 25.0% |
| ! | AAGAACTAAACCAATATGTT+TGG | + | chr1_1:28798156-28798175 | None:intergenic | 25.0% |
| !! | AGTAATTAGTCCATTTTCTT+AGG | - | chr1_1:28798261-28798280 | Msa0017400:CDS | 25.0% |
| !! | TGATATGTTTTGTAAAGCAA+AGG | + | chr1_1:28798393-28798412 | None:intergenic | 25.0% |
| !! | GAAGTGAAGTACAATTTTAT+TGG | - | chr1_1:28798482-28798501 | Msa0017400:CDS | 25.0% |
| ! | ACAAAACATATTGAAAAGAG+AGG | - | chr1_1:28798615-28798634 | Msa0017400:intron | 25.0% |
| ! | GAAAATCAATTGAAATGCTA+AGG | - | chr1_1:28798754-28798773 | Msa0017400:CDS | 25.0% |
| !!! | AACTTTATTTTGATGATGGT+TGG | - | chr1_1:28797431-28797450 | Msa0017400:CDS | 25.0% |
| ! | TATCATAATAGAGAAGAAGA+AGG | - | chr1_1:28797929-28797948 | Msa0017400:CDS | 25.0% |
| ! | CTAAACCAATATCAATCATT+AGG | + | chr1_1:28798020-28798039 | None:intergenic | 25.0% |
| !!! | CTAATGATTGATATTGGTTT+AGG | - | chr1_1:28798018-28798037 | Msa0017400:CDS | 25.0% |
| ! | ATTTCATCATCTTCAAGATT+TGG | + | chr1_1:28798069-28798088 | None:intergenic | 25.0% |
| !!! | TATTGTTTTGCATAGAAGTA+TGG | + | chr1_1:28798123-28798142 | None:intergenic | 25.0% |
| ! | AAGAACTAAACCAATATGTT+TGG | + | chr1_1:28798156-28798175 | None:intergenic | 25.0% |
| !! | AGTAATTAGTCCATTTTCTT+AGG | - | chr1_1:28798261-28798280 | Msa0017400:CDS | 25.0% |
| !! | TGATATGTTTTGTAAAGCAA+AGG | + | chr1_1:28798393-28798412 | None:intergenic | 25.0% |
| !! | GAAGTGAAGTACAATTTTAT+TGG | - | chr1_1:28798482-28798501 | Msa0017400:CDS | 25.0% |
| ! | ACAAAACATATTGAAAAGAG+AGG | - | chr1_1:28798615-28798634 | Msa0017400:intron | 25.0% |
| ! | GAAAATCAATTGAAATGCTA+AGG | - | chr1_1:28798754-28798773 | Msa0017400:CDS | 25.0% |
| TGGCATTGTTAGTCATAATT+TGG | + | chr1_1:28797063-28797082 | None:intergenic | 30.0% | |
| AATTATGACTAACAATGCCA+AGG | - | chr1_1:28797063-28797082 | Msa0017400:CDS | 30.0% | |
| TTTATCCTAAGAGATCATAG+AGG | - | chr1_1:28797370-28797389 | Msa0017400:intron | 30.0% | |
| !! | AATAAAGTTTGTTGCCGATA+GGG | + | chr1_1:28797420-28797439 | None:intergenic | 30.0% |
| !! | AAATAAAGTTTGTTGCCGAT+AGG | + | chr1_1:28797421-28797440 | None:intergenic | 30.0% |
| TTTCAATGTGTGTGAAAACA+AGG | + | chr1_1:28797498-28797517 | None:intergenic | 30.0% | |
| ! | TGATGATGATGATTACACAA+TGG | - | chr1_1:28797651-28797670 | Msa0017400:intron | 30.0% |
| ! | TGATGATGATGATTACACAA+TGG | - | chr1_1:28797651-28797670 | Msa0017400:intron | 30.0% |
| GAAAAAAGGAATAAAGGAGA+TGG | - | chr1_1:28797841-28797860 | Msa0017400:intron | 30.0% | |
| TATTTCGAAGAATGTCATCA+AGG | - | chr1_1:28798360-28798379 | Msa0017400:CDS | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | + | chr1_1:28798429-28798448 | None:intergenic | 30.0% | |
| ! | ATATGTTTTGTGCTCATTTG+CGG | + | chr1_1:28798606-28798625 | None:intergenic | 30.0% |
| GAAATACGTAAATGGAAAGA+TGG | - | chr1_1:28798639-28798658 | Msa0017400:intron | 30.0% | |
| TGGCATTGTTAGTCATAATT+TGG | + | chr1_1:28797063-28797082 | None:intergenic | 30.0% | |
| AATTATGACTAACAATGCCA+AGG | - | chr1_1:28797063-28797082 | Msa0017400:CDS | 30.0% | |
| TTTATCCTAAGAGATCATAG+AGG | - | chr1_1:28797370-28797389 | Msa0017400:intron | 30.0% | |
| !! | AATAAAGTTTGTTGCCGATA+GGG | + | chr1_1:28797420-28797439 | None:intergenic | 30.0% |
| !! | AAATAAAGTTTGTTGCCGAT+AGG | + | chr1_1:28797421-28797440 | None:intergenic | 30.0% |
| TTTCAATGTGTGTGAAAACA+AGG | + | chr1_1:28797498-28797517 | None:intergenic | 30.0% | |
| ! | TGATGATGATGATTACACAA+TGG | - | chr1_1:28797651-28797670 | Msa0017400:intron | 30.0% |
| ! | TGATGATGATGATTACACAA+TGG | - | chr1_1:28797651-28797670 | Msa0017400:intron | 30.0% |
| GAAAAAAGGAATAAAGGAGA+TGG | - | chr1_1:28797841-28797860 | Msa0017400:intron | 30.0% | |
| TATTTCGAAGAATGTCATCA+AGG | - | chr1_1:28798360-28798379 | Msa0017400:CDS | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | + | chr1_1:28798429-28798448 | None:intergenic | 30.0% | |
| ! | ATATGTTTTGTGCTCATTTG+CGG | + | chr1_1:28798606-28798625 | None:intergenic | 30.0% |
| GAAATACGTAAATGGAAAGA+TGG | - | chr1_1:28798639-28798658 | Msa0017400:intron | 30.0% | |
| ! | GGAAGACTTTGAAGAAGTTA+GGG | + | chr1_1:28797093-28797112 | None:intergenic | 35.0% |
| ! | AGGAAGACTTTGAAGAAGTT+AGG | + | chr1_1:28797094-28797113 | None:intergenic | 35.0% |
| !! | AAAGAAGCACTCTGATAGAA+TGG | - | chr1_1:28797117-28797136 | Msa0017400:CDS | 35.0% |
| AGCTGATGCTTTCAAAACAA+AGG | - | chr1_1:28797335-28797354 | Msa0017400:intron | 35.0% | |
| TTCAAAACAAAGGCTGTTGA+AGG | - | chr1_1:28797345-28797364 | Msa0017400:intron | 35.0% | |
| ! | CTTCATCTTTTCACACATTG+AGG | + | chr1_1:28797554-28797573 | None:intergenic | 35.0% |
| CTCAATGTGTGAAAAGATGA+AGG | - | chr1_1:28797552-28797571 | Msa0017400:intron | 35.0% | |
| GGAGGAAAATACTAATACGA+TGG | - | chr1_1:28797585-28797604 | Msa0017400:intron | 35.0% | |
| GGAAAATACTAATACGATGG+AGG | - | chr1_1:28797588-28797607 | Msa0017400:intron | 35.0% | |
| TGATGATTACACAATGGTAG+AGG | - | chr1_1:28797657-28797676 | Msa0017400:intron | 35.0% | |
| ! | TGATAACGATGACATTGATG+AGG | - | chr1_1:28797693-28797712 | Msa0017400:CDS | 35.0% |
| ATGGTAGATGAAGAAGAAGA+TGG | - | chr1_1:28797757-28797776 | Msa0017400:CDS | 35.0% | |
| ! | TGATAACGATGATGTTGATG+AGG | - | chr1_1:28797783-28797802 | Msa0017400:CDS | 35.0% |
| AAGGAATAAAGGAGATGGAA+AGG | - | chr1_1:28797846-28797865 | Msa0017400:intron | 35.0% | |
| AGGAATAAAGGAGATGGAAA+GGG | - | chr1_1:28797847-28797866 | Msa0017400:intron | 35.0% | |
| TGACAACAGACCAAACATAT+TGG | - | chr1_1:28798143-28798162 | Msa0017400:CDS | 35.0% | |
| TCACAGGATGTTCAAAGTAA+CGG | - | chr1_1:28798555-28798574 | Msa0017400:intron | 35.0% | |
| AGAGAGGAGAAATACGTAAA+TGG | - | chr1_1:28798631-28798650 | Msa0017400:intron | 35.0% | |
| ! | GGAAGACTTTGAAGAAGTTA+GGG | + | chr1_1:28797093-28797112 | None:intergenic | 35.0% |
| ! | AGGAAGACTTTGAAGAAGTT+AGG | + | chr1_1:28797094-28797113 | None:intergenic | 35.0% |
| !! | AAAGAAGCACTCTGATAGAA+TGG | - | chr1_1:28797117-28797136 | Msa0017400:CDS | 35.0% |
| AGCTGATGCTTTCAAAACAA+AGG | - | chr1_1:28797335-28797354 | Msa0017400:intron | 35.0% | |
| TTCAAAACAAAGGCTGTTGA+AGG | - | chr1_1:28797345-28797364 | Msa0017400:intron | 35.0% | |
| ! | CTTCATCTTTTCACACATTG+AGG | + | chr1_1:28797554-28797573 | None:intergenic | 35.0% |
| CTCAATGTGTGAAAAGATGA+AGG | - | chr1_1:28797552-28797571 | Msa0017400:intron | 35.0% | |
| GGAGGAAAATACTAATACGA+TGG | - | chr1_1:28797585-28797604 | Msa0017400:intron | 35.0% | |
| GGAAAATACTAATACGATGG+AGG | - | chr1_1:28797588-28797607 | Msa0017400:intron | 35.0% | |
| TGATGATTACACAATGGTAG+AGG | - | chr1_1:28797657-28797676 | Msa0017400:intron | 35.0% | |
| ! | TGATAACGATGACATTGATG+AGG | - | chr1_1:28797693-28797712 | Msa0017400:CDS | 35.0% |
| ATGGTAGATGAAGAAGAAGA+TGG | - | chr1_1:28797757-28797776 | Msa0017400:CDS | 35.0% | |
| ! | TGATAACGATGATGTTGATG+AGG | - | chr1_1:28797783-28797802 | Msa0017400:CDS | 35.0% |
| AAGGAATAAAGGAGATGGAA+AGG | - | chr1_1:28797846-28797865 | Msa0017400:intron | 35.0% | |
| AGGAATAAAGGAGATGGAAA+GGG | - | chr1_1:28797847-28797866 | Msa0017400:intron | 35.0% | |
| TGACAACAGACCAAACATAT+TGG | - | chr1_1:28798143-28798162 | Msa0017400:CDS | 35.0% | |
| TCACAGGATGTTCAAAGTAA+CGG | - | chr1_1:28798555-28798574 | Msa0017400:intron | 35.0% | |
| AGAGAGGAGAAATACGTAAA+TGG | - | chr1_1:28798631-28798650 | Msa0017400:intron | 35.0% | |
| ! | TATCAGAGTGCTTCTTTGTG+AGG | + | chr1_1:28797114-28797133 | None:intergenic | 40.0% |
| CACTTCCTCTATGATCTCTT+AGG | + | chr1_1:28797378-28797397 | None:intergenic | 40.0% | |
| GAGATCATAGAGGAAGTGAT+TGG | - | chr1_1:28797380-28797399 | Msa0017400:intron | 40.0% | |
| CACACATTGAGGATAGTTCA+AGG | + | chr1_1:28797543-28797562 | None:intergenic | 40.0% | |
| GTGTGAAAAGATGAAGGTGA+TGG | - | chr1_1:28797558-28797577 | Msa0017400:intron | 40.0% | |
| TACTAATACGATGGAGGATG+AGG | - | chr1_1:28797594-28797613 | Msa0017400:intron | 40.0% | |
| ACAATGGTAGAGGAAGAAGA+TGG | - | chr1_1:28797667-28797686 | Msa0017400:intron | 40.0% | |
| ! | TAACGATGATGTTGATGAGG+AGG | - | chr1_1:28797786-28797805 | Msa0017400:CDS | 40.0% |
| !! | GATATTGGTTTAGGGAGCAT+TGG | - | chr1_1:28798027-28798046 | Msa0017400:CDS | 40.0% |
| GCTGAAATGTATATTCAGCC+AGG | - | chr1_1:28798093-28798112 | Msa0017400:CDS | 40.0% | |
| ! | GCATAGAAGTATGGATTTCC+TGG | + | chr1_1:28798114-28798133 | None:intergenic | 40.0% |
| ! | TAGTCCATTTTCTTAGGCCT+AGG | - | chr1_1:28798267-28798286 | Msa0017400:CDS | 40.0% |
| ! | AGTCCATTTTCTTAGGCCTA+GGG | - | chr1_1:28798268-28798287 | Msa0017400:CDS | 40.0% |
| TTCATCCTTTCTGTCATCAC+AGG | - | chr1_1:28798539-28798558 | Msa0017400:intron | 40.0% | |
| AACATCCTGTGATGACAGAA+AGG | + | chr1_1:28798547-28798566 | None:intergenic | 40.0% | |
| TTGCGGCAATACATGATGAT+AGG | + | chr1_1:28798589-28798608 | None:intergenic | 40.0% | |
| TGTGAACTTGTGTTGCATGA+AGG | - | chr1_1:28798732-28798751 | Msa0017400:CDS | 40.0% | |
| ! | TATCAGAGTGCTTCTTTGTG+AGG | + | chr1_1:28797114-28797133 | None:intergenic | 40.0% |
| CACTTCCTCTATGATCTCTT+AGG | + | chr1_1:28797378-28797397 | None:intergenic | 40.0% | |
| GAGATCATAGAGGAAGTGAT+TGG | - | chr1_1:28797380-28797399 | Msa0017400:intron | 40.0% | |
| CACACATTGAGGATAGTTCA+AGG | + | chr1_1:28797543-28797562 | None:intergenic | 40.0% | |
| GTGTGAAAAGATGAAGGTGA+TGG | - | chr1_1:28797558-28797577 | Msa0017400:intron | 40.0% | |
| TACTAATACGATGGAGGATG+AGG | - | chr1_1:28797594-28797613 | Msa0017400:intron | 40.0% | |
| ACAATGGTAGAGGAAGAAGA+TGG | - | chr1_1:28797667-28797686 | Msa0017400:intron | 40.0% | |
| ! | TAACGATGATGTTGATGAGG+AGG | - | chr1_1:28797786-28797805 | Msa0017400:CDS | 40.0% |
| !! | GATATTGGTTTAGGGAGCAT+TGG | - | chr1_1:28798027-28798046 | Msa0017400:CDS | 40.0% |
| GCTGAAATGTATATTCAGCC+AGG | - | chr1_1:28798093-28798112 | Msa0017400:CDS | 40.0% | |
| ! | GCATAGAAGTATGGATTTCC+TGG | + | chr1_1:28798114-28798133 | None:intergenic | 40.0% |
| ! | TAGTCCATTTTCTTAGGCCT+AGG | - | chr1_1:28798267-28798286 | Msa0017400:CDS | 40.0% |
| ! | AGTCCATTTTCTTAGGCCTA+GGG | - | chr1_1:28798268-28798287 | Msa0017400:CDS | 40.0% |
| TTCATCCTTTCTGTCATCAC+AGG | - | chr1_1:28798539-28798558 | Msa0017400:intron | 40.0% | |
| AACATCCTGTGATGACAGAA+AGG | + | chr1_1:28798547-28798566 | None:intergenic | 40.0% | |
| TTGCGGCAATACATGATGAT+AGG | + | chr1_1:28798589-28798608 | None:intergenic | 40.0% | |
| TGTGAACTTGTGTTGCATGA+AGG | - | chr1_1:28798732-28798751 | Msa0017400:CDS | 40.0% | |
| GAAGAAGTTAGGGAACTCCT+TGG | + | chr1_1:28797083-28797102 | None:intergenic | 45.0% | |
| TCAGCTTCACAAAAGCCGTT+GGG | + | chr1_1:28797321-28797340 | None:intergenic | 45.0% | |
| ATCAGCTTCACAAAAGCCGT+TGG | + | chr1_1:28797322-28797341 | None:intergenic | 45.0% | |
| !! | AAAGATGAAGGTGATGGACG+AGG | - | chr1_1:28797564-28797583 | Msa0017400:intron | 45.0% |
| CGATGACATTGATGAGGAGA+AGG | - | chr1_1:28797699-28797718 | Msa0017400:CDS | 45.0% | |
| CATTGATGAGGAGAAGGATG+AGG | - | chr1_1:28797705-28797724 | Msa0017400:CDS | 45.0% | |
| TCACCCTAGGCCTAAGAAAA+TGG | + | chr1_1:28798274-28798293 | None:intergenic | 45.0% | |
| ! | ATTTTCTTAGGCCTAGGGTG+AGG | - | chr1_1:28798273-28798292 | Msa0017400:CDS | 45.0% |
| ACCAATTTCATCCTCACCCT+AGG | + | chr1_1:28798287-28798306 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATACAA+GGG | + | chr1_1:28798416-28798435 | None:intergenic | 45.0% | |
| GAAGAAGTTAGGGAACTCCT+TGG | + | chr1_1:28797083-28797102 | None:intergenic | 45.0% | |
| TCAGCTTCACAAAAGCCGTT+GGG | + | chr1_1:28797321-28797340 | None:intergenic | 45.0% | |
| ATCAGCTTCACAAAAGCCGT+TGG | + | chr1_1:28797322-28797341 | None:intergenic | 45.0% | |
| !! | AAAGATGAAGGTGATGGACG+AGG | - | chr1_1:28797564-28797583 | Msa0017400:intron | 45.0% |
| CGATGACATTGATGAGGAGA+AGG | - | chr1_1:28797699-28797718 | Msa0017400:CDS | 45.0% | |
| CATTGATGAGGAGAAGGATG+AGG | - | chr1_1:28797705-28797724 | Msa0017400:CDS | 45.0% | |
| TCACCCTAGGCCTAAGAAAA+TGG | + | chr1_1:28798274-28798293 | None:intergenic | 45.0% | |
| ! | ATTTTCTTAGGCCTAGGGTG+AGG | - | chr1_1:28798273-28798292 | Msa0017400:CDS | 45.0% |
| ACCAATTTCATCCTCACCCT+AGG | + | chr1_1:28798287-28798306 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATACAA+GGG | + | chr1_1:28798416-28798435 | None:intergenic | 45.0% | |
| !! | AAATAATGTATAATAATATT+TGG | + | chr1_1:28797172-28797191 | None:intergenic | 5.0% |
| !! | AAATAATGTATAATAATATT+TGG | + | chr1_1:28797172-28797191 | None:intergenic | 5.0% |
| TCTGCTGCAGCTTATCCCAA+CGG | - | chr1_1:28797303-28797322 | Msa0017400:intron | 50.0% | |
| CATGTCAAAGTGCGCCCTAT+CGG | - | chr1_1:28797403-28797422 | Msa0017400:intron | 50.0% | |
| TACGATGGAGGATGAGGAAG+AGG | - | chr1_1:28797600-28797619 | Msa0017400:intron | 50.0% | |
| GAGGATGAGGAAGAGGAAGA+TGG | - | chr1_1:28797607-28797626 | Msa0017400:intron | 50.0% | |
| ! | CGATGATGTTGATGAGGAGG+AGG | - | chr1_1:28797789-28797808 | Msa0017400:intron | 50.0% |
| GCCTAGGGTGAGGATGAAAT+TGG | - | chr1_1:28798283-28798302 | Msa0017400:CDS | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | + | chr1_1:28798417-28798436 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | - | chr1_1:28798414-28798433 | Msa0017400:CDS | 50.0% | |
| ATGGCCGAGTATTTGTGCGA+GGG | - | chr1_1:28798658-28798677 | Msa0017400:intron | 50.0% | |
| ! | TGCTAAGGGTGCACGTTGTT+AGG | - | chr1_1:28798769-28798788 | Msa0017400:exon | 50.0% |
| ! | GCTAAGGGTGCACGTTGTTA+GGG | - | chr1_1:28798770-28798789 | Msa0017400:exon | 50.0% |
| TCTGCTGCAGCTTATCCCAA+CGG | - | chr1_1:28797303-28797322 | Msa0017400:intron | 50.0% | |
| CATGTCAAAGTGCGCCCTAT+CGG | - | chr1_1:28797403-28797422 | Msa0017400:intron | 50.0% | |
| TACGATGGAGGATGAGGAAG+AGG | - | chr1_1:28797600-28797619 | Msa0017400:intron | 50.0% | |
| GAGGATGAGGAAGAGGAAGA+TGG | - | chr1_1:28797607-28797626 | Msa0017400:intron | 50.0% | |
| ! | CGATGATGTTGATGAGGAGG+AGG | - | chr1_1:28797789-28797808 | Msa0017400:intron | 50.0% |
| GCCTAGGGTGAGGATGAAAT+TGG | - | chr1_1:28798283-28798302 | Msa0017400:CDS | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | + | chr1_1:28798417-28798436 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | - | chr1_1:28798414-28798433 | Msa0017400:CDS | 50.0% | |
| ATGGCCGAGTATTTGTGCGA+GGG | - | chr1_1:28798658-28798677 | Msa0017400:intron | 50.0% | |
| ! | TGCTAAGGGTGCACGTTGTT+AGG | - | chr1_1:28798769-28798788 | Msa0017400:exon | 50.0% |
| ! | GCTAAGGGTGCACGTTGTTA+GGG | - | chr1_1:28798770-28798789 | Msa0017400:exon | 50.0% |
| !! | GATGAAGGTGATGGACGAGG+AGG | - | chr1_1:28797567-28797586 | Msa0017400:intron | 55.0% |
| GATGGCCGAGTATTTGTGCG+AGG | - | chr1_1:28798657-28798676 | Msa0017400:intron | 55.0% | |
| CCCACCCTCGCACAAATACT+CGG | + | chr1_1:28798665-28798684 | None:intergenic | 55.0% | |
| CCGAGTATTTGTGCGAGGGT+GGG | - | chr1_1:28798662-28798681 | Msa0017400:intron | 55.0% | |
| !! | GATGAAGGTGATGGACGAGG+AGG | - | chr1_1:28797567-28797586 | Msa0017400:intron | 55.0% |
| GATGGCCGAGTATTTGTGCG+AGG | - | chr1_1:28798657-28798676 | Msa0017400:intron | 55.0% | |
| CCCACCCTCGCACAAATACT+CGG | + | chr1_1:28798665-28798684 | None:intergenic | 55.0% | |
| CCGAGTATTTGTGCGAGGGT+GGG | - | chr1_1:28798662-28798681 | Msa0017400:intron | 55.0% | |
| GCCGAGTATTTGTGCGAGGG+TGG | - | chr1_1:28798661-28798680 | Msa0017400:intron | 60.0% | |
| GCCGAGTATTTGTGCGAGGG+TGG | - | chr1_1:28798661-28798680 | Msa0017400:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 28797045 | 28798800 | 28797045 | ID=Msa0017400;Name=Msa0017400 |
| chr1_1 | mRNA | 28797045 | 28798800 | 28797045 | ID=Msa0017400-mRNA-1;Parent=Msa0017400;Name=Msa0017400-mRNA-1;_AED=0.29;_eAED=0.30;_QI=22|0.25|0.2|1|1|1|5|0|372 |
| chr1_1 | exon | 28797045 | 28797284 | 28797045 | ID=Msa0017400-mRNA-1:exon:9652;Parent=Msa0017400-mRNA-1 |
| chr1_1 | exon | 28797410 | 28797487 | 28797410 | ID=Msa0017400-mRNA-1:exon:9651;Parent=Msa0017400-mRNA-1 |
| chr1_1 | exon | 28797681 | 28797805 | 28797681 | ID=Msa0017400-mRNA-1:exon:9650;Parent=Msa0017400-mRNA-1 |
| chr1_1 | exon | 28797929 | 28798532 | 28797929 | ID=Msa0017400-mRNA-1:exon:9649;Parent=Msa0017400-mRNA-1 |
| chr1_1 | exon | 28798707 | 28798800 | 28798707 | ID=Msa0017400-mRNA-1:exon:9648;Parent=Msa0017400-mRNA-1 |
| chr1_1 | five_prime_UTR | 28798779 | 28798800 | 28798779 | ID=Msa0017400-mRNA-1:five_prime_utr;Parent=Msa0017400-mRNA-1 |
| chr1_1 | CDS | 28798707 | 28798778 | 28798707 | ID=Msa0017400-mRNA-1:cds;Parent=Msa0017400-mRNA-1 |
| chr1_1 | CDS | 28797929 | 28798532 | 28797929 | ID=Msa0017400-mRNA-1:cds;Parent=Msa0017400-mRNA-1 |
| chr1_1 | CDS | 28797681 | 28797805 | 28797681 | ID=Msa0017400-mRNA-1:cds;Parent=Msa0017400-mRNA-1 |
| chr1_1 | CDS | 28797410 | 28797487 | 28797410 | ID=Msa0017400-mRNA-1:cds;Parent=Msa0017400-mRNA-1 |
| chr1_1 | CDS | 28797045 | 28797284 | 28797045 | ID=Msa0017400-mRNA-1:cds;Parent=Msa0017400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
