Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017410 | XP_039686178.1 | 63.277 | 354 | 107 | 3 | 1 | 352 | 342 | 674 | 1.94e-140 | 424 |
| Msa0017410 | XP_039686178.1 | 84.225 | 355 | 36 | 1 | 1 | 355 | 1 | 335 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017410 | sp|Q9SZ05|Y3440_ARATH | 23.558 | 416 | 224 | 11 | 2 | 352 | 7 | 393 | 9.32e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0017410 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017410 | MtrunA17_Chr1g0169161 | 84.225 | 355 | 36 | 1 | 1 | 355 | 1 | 335 | 0.0 | 547 |
| Msa0017410 | MtrunA17_Chr1g0169171 | 61.755 | 319 | 99 | 3 | 36 | 352 | 3 | 300 | 7.76e-128 | 368 |
| Msa0017410 | MtrunA17_Chr1g0169081 | 73.653 | 167 | 41 | 1 | 190 | 353 | 157 | 323 | 5.62e-86 | 263 |
| Msa0017410 | MtrunA17_Chr3g0125151 | 70.400 | 125 | 35 | 1 | 228 | 352 | 1 | 123 | 1.77e-63 | 198 |
| Msa0017410 | MtrunA17_Chr3g0125161 | 74.167 | 120 | 31 | 0 | 2 | 121 | 13 | 132 | 2.74e-57 | 183 |
| Msa0017410 | MtrunA17_Chr1g0154251 | 26.531 | 147 | 105 | 2 | 12 | 157 | 27 | 171 | 2.70e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017410 | AT3G06160.5 | 24.857 | 350 | 209 | 9 | 9 | 352 | 8 | 309 | 3.24e-17 | 81.6 |
| Msa0017410 | AT3G06160.4 | 24.857 | 350 | 209 | 9 | 9 | 352 | 8 | 309 | 3.24e-17 | 81.6 |
| Msa0017410 | AT3G06160.3 | 24.857 | 350 | 209 | 9 | 9 | 352 | 8 | 309 | 3.24e-17 | 81.6 |
| Msa0017410 | AT3G06160.1 | 24.857 | 350 | 209 | 9 | 9 | 352 | 23 | 324 | 3.48e-17 | 82.0 |
| Msa0017410 | AT3G06160.2 | 24.857 | 350 | 209 | 9 | 9 | 352 | 67 | 368 | 7.36e-17 | 81.3 |
| Msa0017410 | AT5G57720.1 | 24.110 | 365 | 196 | 15 | 1 | 352 | 3 | 299 | 1.23e-15 | 77.0 |
| Msa0017410 | AT4G34400.2 | 23.558 | 416 | 224 | 11 | 2 | 352 | 7 | 393 | 9.48e-14 | 72.4 |
| Msa0017410 | AT4G34400.1 | 23.558 | 416 | 224 | 11 | 2 | 352 | 7 | 393 | 9.48e-14 | 72.4 |
| Msa0017410 | AT3G18960.1 | 34.951 | 103 | 64 | 2 | 11 | 112 | 30 | 130 | 1.84e-11 | 63.5 |
| Msa0017410 | AT3G18960.2 | 34.951 | 103 | 64 | 2 | 11 | 112 | 30 | 130 | 2.17e-11 | 62.8 |
| Msa0017410 | AT5G18000.1 | 38.144 | 97 | 56 | 3 | 9 | 102 | 18 | 113 | 3.59e-11 | 63.9 |
| Msa0017410 | AT5G60140.1 | 23.782 | 349 | 221 | 8 | 11 | 351 | 15 | 326 | 4.97e-11 | 63.5 |
Find 56 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGAGTGCTTATCTTTA+AGG | 0.100384 | 1_1:+28808203 | None:intergenic |
| TCAAAACTTACATGCTTTGC+AGG | 0.294940 | 1_1:+28807325 | None:intergenic |
| ACCAAGTTCACAAAAGCATT+TGG | 0.331753 | 1_1:+28807857 | None:intergenic |
| TGAGGAGGAAAATAATAATA+TGG | 0.339726 | 1_1:-28807594 | Msa0017410:CDS |
| AAAGAATTATACCAGTTCAT+TGG | 0.347229 | 1_1:+28807126 | None:intergenic |
| TAGAGAAGAAAATTGTTTAG+TGG | 0.355645 | 1_1:-28807714 | Msa0017410:CDS |
| CATCAATTTCATCATCTTCA+AGG | 0.360750 | 1_1:+28807209 | None:intergenic |
| TGATAAGGGTGCACATTGTT+AGG | 0.364925 | 1_1:-28806500 | Msa0017410:CDS |
| GATGGTGATGATGTTGATTA+TGG | 0.366118 | 1_1:-28807551 | Msa0017410:CDS |
| CTCTTCCTCTACGATCTCTT+AGG | 0.380260 | 1_1:+28807801 | None:intergenic |
| GGAAGATGAGGAAGAGGAAG+AGG | 0.385448 | 1_1:-28807573 | Msa0017410:CDS |
| TGCTGAAATGTACATTCAAC+CGG | 0.405717 | 1_1:-28807188 | Msa0017410:CDS |
| AAGAATTATACCAGTTCATT+GGG | 0.406552 | 1_1:+28807127 | None:intergenic |
| CCAAGTTCACAAAAGCATTT+GGG | 0.414978 | 1_1:+28807858 | None:intergenic |
| GAGAAGCAATAGAAATGATA+AGG | 0.417868 | 1_1:-28806515 | Msa0017410:CDS |
| GCAATGAAGTGTGGATTTCC+CGG | 0.424208 | 1_1:+28807169 | None:intergenic |
| AAATCCTTGATAACATTCTT+CGG | 0.436976 | 1_1:+28806901 | None:intergenic |
| GAGATCGTAGAGGAAGAGAT+TGG | 0.455923 | 1_1:-28807796 | Msa0017410:CDS |
| TAATATGGAAGATGAGGAAG+AGG | 0.461266 | 1_1:-28807579 | Msa0017410:CDS |
| GACATTGGGAGCAGTTCTGC+AGG | 0.467794 | 1_1:-28807238 | Msa0017410:CDS |
| AGAGGGTGATATGATGGAAG+AGG | 0.467876 | 1_1:-28807471 | Msa0017410:CDS |
| AATGTGAAAGCGCGTCGTAT+TGG | 0.480824 | 1_1:-28807773 | Msa0017410:CDS |
| TGGTGAAGAGGGTGATATGA+TGG | 0.494139 | 1_1:-28807477 | Msa0017410:CDS |
| TACAAGGAAAATAATAAAAG+TGG | 0.503753 | 1_1:-28807365 | Msa0017410:CDS |
| AATGGCCGAGTCTTGGTGCT+AGG | 0.508826 | 1_1:-28806612 | Msa0017410:CDS |
| AGATAAGCACTCTGAGAGAA+TGG | 0.511759 | 1_1:-28808197 | Msa0017410:intron |
| CCTTGCAGTGGCAACATACA+AGG | 0.512825 | 1_1:+28806851 | None:intergenic |
| TCTTTACAGACCCAATGAAC+TGG | 0.514100 | 1_1:-28807137 | Msa0017410:intron |
| GATGAGGAAGAGGAAGAGGA+TGG | 0.519418 | 1_1:-28807569 | Msa0017410:CDS |
| AGAGAGGTCAAATACGTACT+TGG | 0.526584 | 1_1:-28806638 | Msa0017410:CDS |
| AGAAGCAATAGAAATGATAA+GGG | 0.545719 | 1_1:-28806514 | Msa0017410:CDS |
| ATGGCCGAGTCTTGGTGCTA+GGG | 0.545802 | 1_1:-28806611 | Msa0017410:CDS |
| AAGGGTGCACATTGTTAGGA+AGG | 0.551559 | 1_1:-28806496 | Msa0017410:CDS |
| AACAATGCAAAGGAGTATCC+TGG | 0.558136 | 1_1:-28808241 | Msa0017410:CDS |
| GTGTGAAAAGATGCCGGTGA+TGG | 0.558389 | 1_1:-28807618 | Msa0017410:CDS |
| AAATAATAATATGGAAGATG+AGG | 0.565051 | 1_1:-28807585 | Msa0017410:CDS |
| ACAGAGTGAAAATGTGTACA+AGG | 0.566220 | 1_1:-28807381 | Msa0017410:CDS |
| AGTGACGATGATGGTGAAGA+GGG | 0.580488 | 1_1:-28807488 | Msa0017410:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.583961 | 1_1:-28806851 | Msa0017410:intron |
| GATGATGATGATGACGATGT+TGG | 0.585848 | 1_1:-28807440 | Msa0017410:CDS |
| AAAGATGCCGGTGATGGATG+AGG | 0.602253 | 1_1:-28807612 | Msa0017410:CDS |
| GCCACCCTAGCACCAAGACT+CGG | 0.602379 | 1_1:+28806607 | None:intergenic |
| GCCGAGTCTTGGTGCTAGGG+TGG | 0.603546 | 1_1:-28806608 | Msa0017410:CDS |
| ATCAATGTGTGAAAAGATGC+CGG | 0.608751 | 1_1:-28807624 | Msa0017410:CDS |
| GTATGTCTTGTGCTGATCTG+TGG | 0.608903 | 1_1:+28806666 | None:intergenic |
| TGATGATGATGATGCTGAAG+AGG | 0.610168 | 1_1:-28807519 | Msa0017410:CDS |
| ATTAGAATTATACCTTGCAG+TGG | 0.615156 | 1_1:+28806839 | None:intergenic |
| GATGATGATGATGCTGAAGA+GGG | 0.617100 | 1_1:-28807518 | Msa0017410:CDS |
| GGTGATGATAGTGACGATGA+TGG | 0.621569 | 1_1:-28807497 | Msa0017410:CDS |
| AACTATGACTAACAATGCAA+AGG | 0.632234 | 1_1:-28808251 | None:intergenic |
| TAGTGACGATGATGGTGAAG+AGG | 0.632837 | 1_1:-28807489 | Msa0017410:CDS |
| GATGCCGGTGATGGATGAGG+AGG | 0.648893 | 1_1:-28807609 | Msa0017410:CDS |
| TGTGAACTTGTAATGCGTAA+CGG | 0.682308 | 1_1:-28806537 | Msa0017410:CDS |
| ACAAGACATACCGAAAAGAG+AGG | 0.689496 | 1_1:-28806654 | Msa0017410:CDS |
| GCTGAAATGTACATTCAACC+GGG | 0.690377 | 1_1:-28807187 | Msa0017410:CDS |
| TTTATCCTAAGAGATCGTAG+AGG | 0.735718 | 1_1:-28807806 | Msa0017410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAATTTTAACATATTGTA+TGG | - | chr1_1:28806708-28806727 | Msa0017410:CDS | 15.0% |
| !!! | TAATGATTTCTTTTGTTTTA+GGG | - | chr1_1:28807474-28807493 | Msa0017410:CDS | 15.0% |
| !! | AAAAATAGAGATTAATTAGA+AGG | + | chr1_1:28807688-28807707 | None:intergenic | 15.0% |
| !!! | CAAAATTTTAACATATTGTA+TGG | - | chr1_1:28806708-28806727 | Msa0017410:CDS | 15.0% |
| !!! | TAATGATTTCTTTTGTTTTA+GGG | - | chr1_1:28807474-28807493 | Msa0017410:CDS | 15.0% |
| !! | AAAAATAGAGATTAATTAGA+AGG | + | chr1_1:28807688-28807707 | None:intergenic | 15.0% |
| !! | AAAATAAATTAGATGAAGCA+TGG | + | chr1_1:28806581-28806600 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTTTTGATAAAGT+CGG | - | chr1_1:28806598-28806617 | Msa0017410:CDS | 20.0% |
| !! | TTTCAATATGAGTAAAAACA+AGG | + | chr1_1:28807057-28807076 | None:intergenic | 20.0% |
| !! | AAATAATAATATGGAAGATG+AGG | - | chr1_1:28807150-28807169 | Msa0017410:CDS | 20.0% |
| !! | TACAAGGAAAATAATAAAAG+TGG | - | chr1_1:28807370-28807389 | Msa0017410:CDS | 20.0% |
| !! | CTAAAACAAAAGAAATCATT+AGG | + | chr1_1:28807475-28807494 | None:intergenic | 20.0% |
| !!! | CTAATGATTTCTTTTGTTTT+AGG | - | chr1_1:28807473-28807492 | Msa0017410:CDS | 20.0% |
| !!! | AATGATTTCTTTTGTTTTAG+GGG | - | chr1_1:28807475-28807494 | Msa0017410:CDS | 20.0% |
| !!! | TTTTTTTGTCCATATTCAAA+AGG | - | chr1_1:28807707-28807726 | Msa0017410:CDS | 20.0% |
| !!! | CATTCATCCTTTTTTTTTTA+TGG | - | chr1_1:28808001-28808020 | Msa0017410:intron | 20.0% |
| !! | AAAATAAATTAGATGAAGCA+TGG | + | chr1_1:28806581-28806600 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTTTTGATAAAGT+CGG | - | chr1_1:28806598-28806617 | Msa0017410:CDS | 20.0% |
| !! | TTTCAATATGAGTAAAAACA+AGG | + | chr1_1:28807057-28807076 | None:intergenic | 20.0% |
| !! | AAATAATAATATGGAAGATG+AGG | - | chr1_1:28807150-28807169 | Msa0017410:CDS | 20.0% |
| !! | TACAAGGAAAATAATAAAAG+TGG | - | chr1_1:28807370-28807389 | Msa0017410:CDS | 20.0% |
| !! | CTAAAACAAAAGAAATCATT+AGG | + | chr1_1:28807475-28807494 | None:intergenic | 20.0% |
| !!! | CTAATGATTTCTTTTGTTTT+AGG | - | chr1_1:28807473-28807492 | Msa0017410:CDS | 20.0% |
| !!! | AATGATTTCTTTTGTTTTAG+GGG | - | chr1_1:28807475-28807494 | Msa0017410:CDS | 20.0% |
| !!! | TTTTTTTGTCCATATTCAAA+AGG | - | chr1_1:28807707-28807726 | Msa0017410:CDS | 20.0% |
| !!! | CATTCATCCTTTTTTTTTTA+TGG | - | chr1_1:28808001-28808020 | Msa0017410:intron | 20.0% |
| ! | ACTATATGATATGTGAACTT+TGG | - | chr1_1:28806771-28806790 | Msa0017410:intron | 25.0% |
| ! | TTCAAAAAGAAGGGTAATAA+AGG | - | chr1_1:28806904-28806923 | Msa0017410:CDS | 25.0% |
| !!! | AGTTTTATTTTGATGATGGT+TGG | - | chr1_1:28806990-28807009 | Msa0017410:intron | 25.0% |
| ! | TAGAGAAGAAAATTGTTTAG+TGG | - | chr1_1:28807021-28807040 | Msa0017410:intron | 25.0% |
| ! | TGAGGAGGAAAATAATAATA+TGG | - | chr1_1:28807141-28807160 | Msa0017410:CDS | 25.0% |
| ! | AAGAATTATACCAGTTCATT+GGG | + | chr1_1:28807611-28807630 | None:intergenic | 25.0% |
| ! | AAAGAATTATACCAGTTCAT+TGG | + | chr1_1:28807612-28807631 | None:intergenic | 25.0% |
| !! | CTCAATAATCCTTTTGAATA+TGG | + | chr1_1:28807719-28807738 | None:intergenic | 25.0% |
| ! | CTTCTTTGATGTACTTATTA+TGG | - | chr1_1:28807796-28807815 | Msa0017410:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+CGG | + | chr1_1:28807837-28807856 | None:intergenic | 25.0% |
| ! | TAACTTCATAATCGTGAAAA+AGG | + | chr1_1:28807932-28807951 | None:intergenic | 25.0% |
| ! | TATCCTGCCATAAAAAAAAA+AGG | + | chr1_1:28808011-28808030 | None:intergenic | 25.0% |
| ! | AGAAGCAATAGAAATGATAA+GGG | - | chr1_1:28808221-28808240 | Msa0017410:CDS | 25.0% |
| ! | ACTATATGATATGTGAACTT+TGG | - | chr1_1:28806771-28806790 | Msa0017410:intron | 25.0% |
| ! | TTCAAAAAGAAGGGTAATAA+AGG | - | chr1_1:28806904-28806923 | Msa0017410:CDS | 25.0% |
| !!! | AGTTTTATTTTGATGATGGT+TGG | - | chr1_1:28806990-28807009 | Msa0017410:intron | 25.0% |
| ! | TAGAGAAGAAAATTGTTTAG+TGG | - | chr1_1:28807021-28807040 | Msa0017410:intron | 25.0% |
| ! | TGAGGAGGAAAATAATAATA+TGG | - | chr1_1:28807141-28807160 | Msa0017410:CDS | 25.0% |
| ! | AAGAATTATACCAGTTCATT+GGG | + | chr1_1:28807611-28807630 | None:intergenic | 25.0% |
| ! | AAAGAATTATACCAGTTCAT+TGG | + | chr1_1:28807612-28807631 | None:intergenic | 25.0% |
| !! | CTCAATAATCCTTTTGAATA+TGG | + | chr1_1:28807719-28807738 | None:intergenic | 25.0% |
| ! | CTTCTTTGATGTACTTATTA+TGG | - | chr1_1:28807796-28807815 | Msa0017410:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+CGG | + | chr1_1:28807837-28807856 | None:intergenic | 25.0% |
| ! | TAACTTCATAATCGTGAAAA+AGG | + | chr1_1:28807932-28807951 | None:intergenic | 25.0% |
| ! | TATCCTGCCATAAAAAAAAA+AGG | + | chr1_1:28808011-28808030 | None:intergenic | 25.0% |
| ! | AGAAGCAATAGAAATGATAA+GGG | - | chr1_1:28808221-28808240 | Msa0017410:CDS | 25.0% |
| !! | TAAGTAGCATTGATCTTCAT+TGG | - | chr1_1:28806831-28806850 | Msa0017410:intron | 30.0% |
| !!! | GACGAGTTTTATTTTGATGA+TGG | - | chr1_1:28806986-28807005 | Msa0017410:intron | 30.0% |
| CATCAATTTCATCATCTTCA+AGG | + | chr1_1:28807529-28807548 | None:intergenic | 30.0% | |
| TAGAAGGTCATAAAGTACAA+AGG | + | chr1_1:28807672-28807691 | None:intergenic | 30.0% | |
| ! | TTTTCCGAAGAATGTTATCA+AGG | - | chr1_1:28807830-28807849 | Msa0017410:CDS | 30.0% |
| ATTAGAATTATACCTTGCAG+TGG | + | chr1_1:28807899-28807918 | None:intergenic | 30.0% | |
| !!! | CATCCTTTTTTTTTTATGGC+AGG | - | chr1_1:28808005-28808024 | Msa0017410:intron | 30.0% |
| CAAATACGTACTTGGAAAAA+TGG | - | chr1_1:28808105-28808124 | Msa0017410:intron | 30.0% | |
| GAGAAGCAATAGAAATGATA+AGG | - | chr1_1:28808220-28808239 | Msa0017410:CDS | 30.0% | |
| !! | TAAGTAGCATTGATCTTCAT+TGG | - | chr1_1:28806831-28806850 | Msa0017410:intron | 30.0% |
| !!! | GACGAGTTTTATTTTGATGA+TGG | - | chr1_1:28806986-28807005 | Msa0017410:intron | 30.0% |
| CATCAATTTCATCATCTTCA+AGG | + | chr1_1:28807529-28807548 | None:intergenic | 30.0% | |
| TAGAAGGTCATAAAGTACAA+AGG | + | chr1_1:28807672-28807691 | None:intergenic | 30.0% | |
| ! | TTTTCCGAAGAATGTTATCA+AGG | - | chr1_1:28807830-28807849 | Msa0017410:CDS | 30.0% |
| ATTAGAATTATACCTTGCAG+TGG | + | chr1_1:28807899-28807918 | None:intergenic | 30.0% | |
| !!! | CATCCTTTTTTTTTTATGGC+AGG | - | chr1_1:28808005-28808024 | Msa0017410:intron | 30.0% |
| CAAATACGTACTTGGAAAAA+TGG | - | chr1_1:28808105-28808124 | Msa0017410:intron | 30.0% | |
| GAGAAGCAATAGAAATGATA+AGG | - | chr1_1:28808220-28808239 | Msa0017410:CDS | 30.0% | |
| ! | TCTCAGAGTGCTTATCTTTA+AGG | + | chr1_1:28806535-28806554 | None:intergenic | 35.0% |
| ATCATGCAAGTGTACATTTG+AGG | + | chr1_1:28806683-28806702 | None:intergenic | 35.0% | |
| !! | CCAAGTTCACAAAAGCATTT+GGG | + | chr1_1:28806880-28806899 | None:intergenic | 35.0% |
| !! | ACCAAGTTCACAAAAGCATT+TGG | + | chr1_1:28806881-28806900 | None:intergenic | 35.0% |
| TTTATCCTAAGAGATCGTAG+AGG | - | chr1_1:28806929-28806948 | Msa0017410:intron | 35.0% | |
| ATCAATGTGTGAAAAGATGC+CGG | - | chr1_1:28807111-28807130 | Msa0017410:intron | 35.0% | |
| TAATATGGAAGATGAGGAAG+AGG | - | chr1_1:28807156-28807175 | Msa0017410:CDS | 35.0% | |
| ! | GATGGTGATGATGTTGATTA+TGG | - | chr1_1:28807184-28807203 | Msa0017410:CDS | 35.0% |
| ACAGAGTGAAAATGTGTACA+AGG | - | chr1_1:28807354-28807373 | Msa0017410:CDS | 35.0% | |
| TCAAAACTTACATGCTTTGC+AGG | + | chr1_1:28807413-28807432 | None:intergenic | 35.0% | |
| !!! | TCTTTTGTTTTAGGGGACAT+TGG | - | chr1_1:28807482-28807501 | Msa0017410:CDS | 35.0% |
| !!! | CTTTTGTTTTAGGGGACATT+GGG | - | chr1_1:28807483-28807502 | Msa0017410:CDS | 35.0% |
| TGCTGAAATGTACATTCAAC+CGG | - | chr1_1:28807547-28807566 | Msa0017410:CDS | 35.0% | |
| ! | CTATGTTTTGCAATGAAGTG+TGG | + | chr1_1:28807578-28807597 | None:intergenic | 35.0% |
| ! | TGACATATTTTGTGAAGCAG+AGG | + | chr1_1:28807863-28807882 | None:intergenic | 35.0% |
| ! | ACGTATTTGACCTCTCTTTT+CGG | + | chr1_1:28808094-28808113 | None:intergenic | 35.0% |
| TGTGAACTTGTAATGCGTAA+CGG | - | chr1_1:28808198-28808217 | Msa0017410:CDS | 35.0% | |
| ! | TCTCAGAGTGCTTATCTTTA+AGG | + | chr1_1:28806535-28806554 | None:intergenic | 35.0% |
| ATCATGCAAGTGTACATTTG+AGG | + | chr1_1:28806683-28806702 | None:intergenic | 35.0% | |
| !! | CCAAGTTCACAAAAGCATTT+GGG | + | chr1_1:28806880-28806899 | None:intergenic | 35.0% |
| !! | ACCAAGTTCACAAAAGCATT+TGG | + | chr1_1:28806881-28806900 | None:intergenic | 35.0% |
| TTTATCCTAAGAGATCGTAG+AGG | - | chr1_1:28806929-28806948 | Msa0017410:intron | 35.0% | |
| ATCAATGTGTGAAAAGATGC+CGG | - | chr1_1:28807111-28807130 | Msa0017410:intron | 35.0% | |
| TAATATGGAAGATGAGGAAG+AGG | - | chr1_1:28807156-28807175 | Msa0017410:CDS | 35.0% | |
| ! | GATGGTGATGATGTTGATTA+TGG | - | chr1_1:28807184-28807203 | Msa0017410:CDS | 35.0% |
| ACAGAGTGAAAATGTGTACA+AGG | - | chr1_1:28807354-28807373 | Msa0017410:CDS | 35.0% | |
| TCAAAACTTACATGCTTTGC+AGG | + | chr1_1:28807413-28807432 | None:intergenic | 35.0% | |
| !!! | TCTTTTGTTTTAGGGGACAT+TGG | - | chr1_1:28807482-28807501 | Msa0017410:CDS | 35.0% |
| !!! | CTTTTGTTTTAGGGGACATT+GGG | - | chr1_1:28807483-28807502 | Msa0017410:CDS | 35.0% |
| TGCTGAAATGTACATTCAAC+CGG | - | chr1_1:28807547-28807566 | Msa0017410:CDS | 35.0% | |
| ! | CTATGTTTTGCAATGAAGTG+TGG | + | chr1_1:28807578-28807597 | None:intergenic | 35.0% |
| ! | TGACATATTTTGTGAAGCAG+AGG | + | chr1_1:28807863-28807882 | None:intergenic | 35.0% |
| ! | ACGTATTTGACCTCTCTTTT+CGG | + | chr1_1:28808094-28808113 | None:intergenic | 35.0% |
| TGTGAACTTGTAATGCGTAA+CGG | - | chr1_1:28808198-28808217 | Msa0017410:CDS | 35.0% | |
| !! | AACAATGCAAAGGAGTATCC+TGG | - | chr1_1:28806494-28806513 | Msa0017410:CDS | 40.0% |
| ! | AGGAAGACTTTGAAAAAGCC+AGG | + | chr1_1:28806515-28806534 | None:intergenic | 40.0% |
| ! | AGATAAGCACTCTGAGAGAA+TGG | - | chr1_1:28806538-28806557 | Msa0017410:CDS | 40.0% |
| ! | CCCAAATGCTTTTGTGAACT+TGG | - | chr1_1:28806877-28806896 | Msa0017410:CDS | 40.0% |
| !! | ACTTGGTGCGTTCAAAAAGA+AGG | - | chr1_1:28806894-28806913 | Msa0017410:CDS | 40.0% |
| ! | CTTGGTGCGTTCAAAAAGAA+GGG | - | chr1_1:28806895-28806914 | Msa0017410:CDS | 40.0% |
| ! | TGATGATGATGATGCTGAAG+AGG | - | chr1_1:28807216-28807235 | Msa0017410:CDS | 40.0% |
| ! | GATGATGATGATGCTGAAGA+GGG | - | chr1_1:28807217-28807236 | Msa0017410:CDS | 40.0% |
| ! | GATGATGATGATGACGATGT+TGG | - | chr1_1:28807295-28807314 | Msa0017410:intron | 40.0% |
| GCTGAAATGTACATTCAACC+GGG | - | chr1_1:28807548-28807567 | Msa0017410:CDS | 40.0% | |
| TCTTTACAGACCCAATGAAC+TGG | - | chr1_1:28807598-28807617 | Msa0017410:CDS | 40.0% | |
| ACAAGACATACCGAAAAGAG+AGG | - | chr1_1:28808081-28808100 | Msa0017410:intron | 40.0% | |
| AGAGAGGTCAAATACGTACT+TGG | - | chr1_1:28808097-28808116 | Msa0017410:intron | 40.0% | |
| ! | TGATAAGGGTGCACATTGTT+AGG | - | chr1_1:28808235-28808254 | Msa0017410:CDS | 40.0% |
| !! | AACAATGCAAAGGAGTATCC+TGG | - | chr1_1:28806494-28806513 | Msa0017410:CDS | 40.0% |
| ! | AGGAAGACTTTGAAAAAGCC+AGG | + | chr1_1:28806515-28806534 | None:intergenic | 40.0% |
| ! | AGATAAGCACTCTGAGAGAA+TGG | - | chr1_1:28806538-28806557 | Msa0017410:CDS | 40.0% |
| ! | CCCAAATGCTTTTGTGAACT+TGG | - | chr1_1:28806877-28806896 | Msa0017410:CDS | 40.0% |
| !! | ACTTGGTGCGTTCAAAAAGA+AGG | - | chr1_1:28806894-28806913 | Msa0017410:CDS | 40.0% |
| ! | CTTGGTGCGTTCAAAAAGAA+GGG | - | chr1_1:28806895-28806914 | Msa0017410:CDS | 40.0% |
| ! | TGATGATGATGATGCTGAAG+AGG | - | chr1_1:28807216-28807235 | Msa0017410:CDS | 40.0% |
| ! | GATGATGATGATGCTGAAGA+GGG | - | chr1_1:28807217-28807236 | Msa0017410:CDS | 40.0% |
| ! | GATGATGATGATGACGATGT+TGG | - | chr1_1:28807295-28807314 | Msa0017410:intron | 40.0% |
| GCTGAAATGTACATTCAACC+GGG | - | chr1_1:28807548-28807567 | Msa0017410:CDS | 40.0% | |
| TCTTTACAGACCCAATGAAC+TGG | - | chr1_1:28807598-28807617 | Msa0017410:CDS | 40.0% | |
| ACAAGACATACCGAAAAGAG+AGG | - | chr1_1:28808081-28808100 | Msa0017410:intron | 40.0% | |
| AGAGAGGTCAAATACGTACT+TGG | - | chr1_1:28808097-28808116 | Msa0017410:intron | 40.0% | |
| ! | TGATAAGGGTGCACATTGTT+AGG | - | chr1_1:28808235-28808254 | Msa0017410:CDS | 40.0% |
| CTCTTCCTCTACGATCTCTT+AGG | + | chr1_1:28806937-28806956 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | - | chr1_1:28806939-28806958 | Msa0017410:intron | 45.0% | |
| ! | AATGTGAAAGCGCGTCGTAT+TGG | - | chr1_1:28806962-28806981 | Msa0017410:intron | 45.0% |
| ! | TTTTCCTCCTCATCCATCAC+CGG | + | chr1_1:28807133-28807152 | None:intergenic | 45.0% |
| ! | GGTGATGATAGTGACGATGA+TGG | - | chr1_1:28807238-28807257 | Msa0017410:CDS | 45.0% |
| ! | TAGTGACGATGATGGTGAAG+AGG | - | chr1_1:28807246-28807265 | Msa0017410:intron | 45.0% |
| ! | AGTGACGATGATGGTGAAGA+GGG | - | chr1_1:28807247-28807266 | Msa0017410:intron | 45.0% |
| TGGTGAAGAGGGTGATATGA+TGG | - | chr1_1:28807258-28807277 | Msa0017410:intron | 45.0% | |
| ! | AGAGGGTGATATGATGGAAG+AGG | - | chr1_1:28807264-28807283 | Msa0017410:intron | 45.0% |
| GCAATGAAGTGTGGATTTCC+CGG | + | chr1_1:28807569-28807588 | None:intergenic | 45.0% | |
| ! | GTATGTCTTGTGCTGATCTG+TGG | + | chr1_1:28808072-28808091 | None:intergenic | 45.0% |
| TTGGAAAAATGGCCGAGTCT+TGG | - | chr1_1:28808116-28808135 | Msa0017410:intron | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | - | chr1_1:28808239-28808258 | Msa0017410:CDS | 45.0% |
| CTCTTCCTCTACGATCTCTT+AGG | + | chr1_1:28806937-28806956 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | - | chr1_1:28806939-28806958 | Msa0017410:intron | 45.0% | |
| ! | AATGTGAAAGCGCGTCGTAT+TGG | - | chr1_1:28806962-28806981 | Msa0017410:intron | 45.0% |
| ! | TTTTCCTCCTCATCCATCAC+CGG | + | chr1_1:28807133-28807152 | None:intergenic | 45.0% |
| ! | GGTGATGATAGTGACGATGA+TGG | - | chr1_1:28807238-28807257 | Msa0017410:CDS | 45.0% |
| ! | TAGTGACGATGATGGTGAAG+AGG | - | chr1_1:28807246-28807265 | Msa0017410:intron | 45.0% |
| ! | AGTGACGATGATGGTGAAGA+GGG | - | chr1_1:28807247-28807266 | Msa0017410:intron | 45.0% |
| TGGTGAAGAGGGTGATATGA+TGG | - | chr1_1:28807258-28807277 | Msa0017410:intron | 45.0% | |
| ! | AGAGGGTGATATGATGGAAG+AGG | - | chr1_1:28807264-28807283 | Msa0017410:intron | 45.0% |
| GCAATGAAGTGTGGATTTCC+CGG | + | chr1_1:28807569-28807588 | None:intergenic | 45.0% | |
| ! | GTATGTCTTGTGCTGATCTG+TGG | + | chr1_1:28808072-28808091 | None:intergenic | 45.0% |
| TTGGAAAAATGGCCGAGTCT+TGG | - | chr1_1:28808116-28808135 | Msa0017410:intron | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | - | chr1_1:28808239-28808258 | Msa0017410:CDS | 45.0% |
| GTGTGAAAAGATGCCGGTGA+TGG | - | chr1_1:28807117-28807136 | Msa0017410:intron | 50.0% | |
| !! | AAAGATGCCGGTGATGGATG+AGG | - | chr1_1:28807123-28807142 | Msa0017410:intron | 50.0% |
| GGAAGATGAGGAAGAGGAAG+AGG | - | chr1_1:28807162-28807181 | Msa0017410:CDS | 50.0% | |
| GATGAGGAAGAGGAAGAGGA+TGG | - | chr1_1:28807166-28807185 | Msa0017410:CDS | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | + | chr1_1:28807887-28807906 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | - | chr1_1:28807884-28807903 | Msa0017410:intron | 50.0% | |
| GTGTGAAAAGATGCCGGTGA+TGG | - | chr1_1:28807117-28807136 | Msa0017410:intron | 50.0% | |
| !! | AAAGATGCCGGTGATGGATG+AGG | - | chr1_1:28807123-28807142 | Msa0017410:intron | 50.0% |
| GGAAGATGAGGAAGAGGAAG+AGG | - | chr1_1:28807162-28807181 | Msa0017410:CDS | 50.0% | |
| GATGAGGAAGAGGAAGAGGA+TGG | - | chr1_1:28807166-28807185 | Msa0017410:CDS | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | + | chr1_1:28807887-28807906 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | - | chr1_1:28807884-28807903 | Msa0017410:intron | 50.0% | |
| GACATTGGGAGCAGTTCTGC+AGG | - | chr1_1:28807497-28807516 | Msa0017410:CDS | 55.0% | |
| !! | AATGGCCGAGTCTTGGTGCT+AGG | - | chr1_1:28808123-28808142 | Msa0017410:intron | 55.0% |
| !! | ATGGCCGAGTCTTGGTGCTA+GGG | - | chr1_1:28808124-28808143 | Msa0017410:intron | 55.0% |
| GACATTGGGAGCAGTTCTGC+AGG | - | chr1_1:28807497-28807516 | Msa0017410:CDS | 55.0% | |
| !! | AATGGCCGAGTCTTGGTGCT+AGG | - | chr1_1:28808123-28808142 | Msa0017410:intron | 55.0% |
| !! | ATGGCCGAGTCTTGGTGCTA+GGG | - | chr1_1:28808124-28808143 | Msa0017410:intron | 55.0% |
| !! | GATGCCGGTGATGGATGAGG+AGG | - | chr1_1:28807126-28807145 | Msa0017410:intron | 60.0% |
| GCCACCCTAGCACCAAGACT+CGG | + | chr1_1:28808131-28808150 | None:intergenic | 60.0% | |
| !! | GATGCCGGTGATGGATGAGG+AGG | - | chr1_1:28807126-28807145 | Msa0017410:intron | 60.0% |
| GCCACCCTAGCACCAAGACT+CGG | + | chr1_1:28808131-28808150 | None:intergenic | 60.0% | |
| !! | GCCGAGTCTTGGTGCTAGGG+TGG | - | chr1_1:28808127-28808146 | Msa0017410:intron | 65.0% |
| !! | GCCGAGTCTTGGTGCTAGGG+TGG | - | chr1_1:28808127-28808146 | Msa0017410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 28806488 | 28808269 | 28806488 | ID=Msa0017410;Name=Msa0017410 |
| chr1_1 | mRNA | 28806488 | 28808269 | 28806488 | ID=Msa0017410-mRNA-1;Parent=Msa0017410;Name=Msa0017410-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|5|0|355 |
| chr1_1 | exon | 28808198 | 28808269 | 28808198 | ID=Msa0017410-mRNA-1:exon:9657;Parent=Msa0017410-mRNA-1 |
| chr1_1 | exon | 28807336 | 28807885 | 28807336 | ID=Msa0017410-mRNA-1:exon:9656;Parent=Msa0017410-mRNA-1 |
| chr1_1 | exon | 28807138 | 28807262 | 28807138 | ID=Msa0017410-mRNA-1:exon:9655;Parent=Msa0017410-mRNA-1 |
| chr1_1 | exon | 28806852 | 28806929 | 28806852 | ID=Msa0017410-mRNA-1:exon:9654;Parent=Msa0017410-mRNA-1 |
| chr1_1 | exon | 28806488 | 28806730 | 28806488 | ID=Msa0017410-mRNA-1:exon:9653;Parent=Msa0017410-mRNA-1 |
| chr1_1 | CDS | 28808198 | 28808269 | 28808198 | ID=Msa0017410-mRNA-1:cds;Parent=Msa0017410-mRNA-1 |
| chr1_1 | CDS | 28807336 | 28807885 | 28807336 | ID=Msa0017410-mRNA-1:cds;Parent=Msa0017410-mRNA-1 |
| chr1_1 | CDS | 28807138 | 28807262 | 28807138 | ID=Msa0017410-mRNA-1:cds;Parent=Msa0017410-mRNA-1 |
| chr1_1 | CDS | 28806852 | 28806929 | 28806852 | ID=Msa0017410-mRNA-1:cds;Parent=Msa0017410-mRNA-1 |
| chr1_1 | CDS | 28806488 | 28806730 | 28806488 | ID=Msa0017410-mRNA-1:cds;Parent=Msa0017410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
