Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0017450 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017450 | MtrunA17_Chr1g0169171 | 60.248 | 322 | 107 | 4 | 33 | 353 | 1 | 302 | 2.18e-117 | 342 |
| Msa0017450 | MtrunA17_Chr1g0169081 | 91.124 | 169 | 14 | 1 | 186 | 353 | 156 | 324 | 1.28e-110 | 325 |
| Msa0017450 | MtrunA17_Chr1g0169161 | 72.093 | 172 | 46 | 1 | 181 | 352 | 164 | 333 | 1.30e-86 | 265 |
| Msa0017450 | MtrunA17_Chr3g0125151 | 70.079 | 127 | 36 | 1 | 227 | 353 | 1 | 125 | 1.72e-63 | 198 |
| Msa0017450 | MtrunA17_Chr3g0125161 | 73.832 | 107 | 28 | 0 | 14 | 120 | 26 | 132 | 1.63e-49 | 163 |
| Msa0017450 | MtrunA17_Chr1g0154191 | 25.828 | 151 | 108 | 2 | 21 | 169 | 34 | 182 | 1.50e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017450 | AT3G18960.2 | 39.080 | 87 | 50 | 2 | 23 | 109 | 44 | 127 | 2.04e-11 | 62.8 |
| Msa0017450 | AT3G18960.1 | 39.080 | 87 | 50 | 2 | 23 | 109 | 44 | 127 | 2.31e-11 | 63.2 |
Find 57 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGAAGTGTGGATTTC+CGG | 0.187944 | 1_1:-28937364 | None:intergenic |
| AAATCCTTGATAACATTCTT+TGG | 0.259575 | 1_1:-28937704 | None:intergenic |
| TGTTAAGGGTGCACATTGTT+AGG | 0.310846 | 1_1:+28938105 | Msa0017450:CDS |
| TGCTGCTGATGATGATATTA+TGG | 0.325258 | 1_1:+28937004 | Msa0017450:CDS |
| GCATCAATTTCGTCGTCTTC+AGG | 0.326868 | 1_1:-28937324 | None:intergenic |
| CTTACCAGCTTTGCACTTGC+AGG | 0.327904 | 1_1:-28937165 | None:intergenic |
| AAGAATTGTACCAATTCATT+AGG | 0.342988 | 1_1:-28937405 | None:intergenic |
| TAGAGACGAAAATTCTTTAG+AGG | 0.344242 | 1_1:+28936782 | Msa0017450:CDS |
| AGATCATGATGATGATATTA+TGG | 0.349539 | 1_1:+28937037 | Msa0017450:CDS |
| ATCAAGTTCACAAAAGCATT+AGG | 0.355825 | 1_1:-28936639 | None:intergenic |
| TGAACTTGATGCGTTCAAAA+AGG | 0.358189 | 1_1:+28936652 | Msa0017450:CDS |
| CTCTTCCTCTACGATCTCTT+AGG | 0.378241 | 1_1:-28936695 | None:intergenic |
| TTGTACCAATTCATTAGGTC+TGG | 0.410085 | 1_1:-28937400 | None:intergenic |
| GCAATGAAGTGTGGATTTCC+GGG | 0.417877 | 1_1:-28937363 | None:intergenic |
| ATATTGAAAATAACATATTC+AGG | 0.423216 | 1_1:+28936829 | Msa0017450:CDS |
| ATATGTGTTCTGCTTATTTG+TGG | 0.425629 | 1_1:-28937939 | None:intergenic |
| TCAAGTTCACAAAAGCATTA+GGG | 0.428525 | 1_1:-28936638 | None:intergenic |
| TCATTCCAGACCTAATGAAT+TGG | 0.430343 | 1_1:+28937395 | Msa0017450:CDS |
| CCTTGCAGTGGCAACATTCA+AGG | 0.435374 | 1_1:-28937754 | None:intergenic |
| CATGGAGGAAAATAACAATA+TGG | 0.446533 | 1_1:+28936902 | Msa0017450:CDS |
| CATCTCTCCACGTACGTACT+TGG | 0.449196 | 1_1:-28937974 | None:intergenic |
| CATGTCAAAGCTCGTCGTAT+TGG | 0.455772 | 1_1:+28936723 | Msa0017450:CDS |
| TATTCCAAAGAATGTTATCA+AGG | 0.458986 | 1_1:+28937700 | Msa0017450:CDS |
| GATGGTCGAGTACGTGTGCT+AGG | 0.481978 | 1_1:+28937993 | Msa0017450:CDS |
| TTGTGGCAAGATGTGATGAT+AGG | 0.486090 | 1_1:-28937922 | None:intergenic |
| GAGATCGTAGAGGAAGAGAT+TGG | 0.486399 | 1_1:+28936700 | Msa0017450:CDS |
| CAATATGGAGGATGAGGAAG+AGG | 0.500994 | 1_1:+28936917 | Msa0017450:CDS |
| GTCGAGTACGTGTGCTAGGG+TGG | 0.503803 | 1_1:+28937997 | Msa0017450:CDS |
| AGAACCTGCAAGTGCAAAGC+TGG | 0.504053 | 1_1:+28937161 | Msa0017450:CDS |
| AAATAACAATATGGAGGATG+AGG | 0.505646 | 1_1:+28936911 | Msa0017450:CDS |
| ACTTCTATGTCAGCCGCCGC+AGG | 0.515194 | 1_1:+28936285 | Msa0017450:CDS |
| ATCAATGTGTGAAAAGAAGA+AGG | 0.520397 | 1_1:+28936872 | Msa0017450:CDS |
| TTTCCAGGCCATGAGTTCCT+CGG | 0.537009 | 1_1:+28936416 | Msa0017450:intron |
| AAGGGTGCACATTGTTAGGA+AGG | 0.552584 | 1_1:+28938109 | Msa0017450:CDS |
| GATGAGGAAGAGGACGGTGA+TGG | 0.556360 | 1_1:+28936927 | Msa0017450:CDS |
| CGAGAATGAAAGAATGTACA+AGG | 0.558420 | 1_1:+28937109 | Msa0017450:CDS |
| TGATGATGATATTATGGCAG+AGG | 0.566025 | 1_1:+28937043 | Msa0017450:CDS |
| AGACGAAAATTCTTTAGAGG+AGG | 0.570120 | 1_1:+28936785 | Msa0017450:CDS |
| GAGATTGTGCTGCATGAAGA+TGG | 0.571999 | 1_1:+28938071 | Msa0017450:CDS |
| CTTGCAGTGGCAACATTCAA+GGG | 0.578433 | 1_1:-28937753 | None:intergenic |
| CAAGTACGTACGTGGAGAGA+TGG | 0.582116 | 1_1:+28937975 | Msa0017450:CDS |
| CCTTGAATGTTGCCACTGCA+AGG | 0.583961 | 1_1:+28937754 | Msa0017450:CDS |
| AAAGAAGAAGGTAAGTGACA+TGG | 0.601455 | 1_1:+28936884 | Msa0017450:CDS |
| GAAGAAGGTAAGTGACATGG+AGG | 0.606864 | 1_1:+28936887 | Msa0017450:CDS |
| ATGGTCGAGTACGTGTGCTA+GGG | 0.616130 | 1_1:+28937994 | Msa0017450:CDS |
| TCGAGTACGTGTGCTAGGGT+GGG | 0.622095 | 1_1:+28937998 | Msa0017450:CDS |
| TGATGATGATATTATGGCAG+AGG | 0.627493 | 1_1:+28937010 | Msa0017450:CDS |
| AATTATACTATACCTTGCAG+TGG | 0.634623 | 1_1:-28937766 | None:intergenic |
| GGAGGAAAATAACAATATGG+AGG | 0.639547 | 1_1:+28936905 | Msa0017450:CDS |
| GTCATCGTCATCATCATCAT+CGG | 0.639856 | 1_1:-28937081 | None:intergenic |
| AGAGAGGCCAAGTACGTACG+TGG | 0.642453 | 1_1:+28937967 | Msa0017450:CDS |
| GCTGAAATGTATATTCAACC+CGG | 0.655563 | 1_1:+28937345 | Msa0017450:CDS |
| ATGGAGGATGAGGAAGAGGA+CGG | 0.656729 | 1_1:+28936921 | Msa0017450:CDS |
| ACAGACTGACGAACCTGCGG+CGG | 0.658078 | 1_1:-28936298 | None:intergenic |
| AGAACACATATCGAAAAGAG+AGG | 0.666945 | 1_1:+28937951 | Msa0017450:CDS |
| TGATGATGATGACGATGACG+AGG | 0.734080 | 1_1:+28936953 | Msa0017450:CDS |
| TTCATCCTAAGAGATCGTAG+AGG | 0.754677 | 1_1:+28936690 | Msa0017450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGAAAATAACATATTC+AGG | + | chr1_1:28936829-28936848 | Msa0017450:CDS | 15.0% |
| !! | GTCAAAAAAAAAAAAAGTAA+TGG | - | chr1_1:28937436-28937455 | None:intergenic | 15.0% |
| !!! | TACTTTTTTTTTTTTTGACA+TGG | + | chr1_1:28937437-28937456 | Msa0017450:intron | 15.0% |
| !! | ATATTGAAAATAACATATTC+AGG | + | chr1_1:28936829-28936848 | Msa0017450:CDS | 15.0% |
| !! | GTCAAAAAAAAAAAAAGTAA+TGG | - | chr1_1:28937436-28937455 | None:intergenic | 15.0% |
| !!! | TACTTTTTTTTTTTTTGACA+TGG | + | chr1_1:28937437-28937456 | Msa0017450:intron | 15.0% |
| !! | CAAAAAGGAATAAAAAACAT+TGG | - | chr1_1:28936500-28936519 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | - | chr1_1:28936818-28936837 | None:intergenic | 20.0% |
| !!! | CAAAATAGTAGTTTTATCTT+CGG | - | chr1_1:28937204-28937223 | None:intergenic | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | + | chr1_1:28937264-28937283 | Msa0017450:intron | 20.0% |
| !! | TCATAATAGTGAAAAATGAA+AGG | - | chr1_1:28937802-28937821 | None:intergenic | 20.0% |
| !! | CAAAAAGGAATAAAAAACAT+TGG | - | chr1_1:28936500-28936519 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | - | chr1_1:28936818-28936837 | None:intergenic | 20.0% |
| !!! | CAAAATAGTAGTTTTATCTT+CGG | - | chr1_1:28937204-28937223 | None:intergenic | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | + | chr1_1:28937264-28937283 | Msa0017450:intron | 20.0% |
| !! | TCATAATAGTGAAAAATGAA+AGG | - | chr1_1:28937802-28937821 | None:intergenic | 20.0% |
| !!! | CAAACTGGTTTTTATCAAAA+AGG | - | chr1_1:28936515-28936534 | None:intergenic | 25.0% |
| !! | CTTTTTGATAAAAACCAGTT+TGG | + | chr1_1:28936513-28936532 | Msa0017450:intron | 25.0% |
| !! | AGATCATGATGATGATATTA+TGG | + | chr1_1:28937037-28937056 | Msa0017450:CDS | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | - | chr1_1:28937272-28937291 | None:intergenic | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | + | chr1_1:28937272-28937291 | Msa0017450:intron | 25.0% |
| !! | ATATATTTTGCAATGAAGTG+TGG | - | chr1_1:28937375-28937394 | None:intergenic | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | - | chr1_1:28937408-28937427 | None:intergenic | 25.0% |
| ! | AATAAAGAGAATAACTAGAC+AGG | - | chr1_1:28937575-28937594 | None:intergenic | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | + | chr1_1:28937700-28937719 | Msa0017450:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | - | chr1_1:28937707-28937726 | None:intergenic | 25.0% |
| ! | GAAAAATGAAAGGTAAAGAT+TGG | - | chr1_1:28937792-28937811 | None:intergenic | 25.0% |
| !! | CATTTTTCACTATTATGAAG+TGG | + | chr1_1:28937804-28937823 | Msa0017450:intron | 25.0% |
| ! | ATCAACACATTAAACAAAAG+TGG | - | chr1_1:28937833-28937852 | None:intergenic | 25.0% |
| ! | ATGGAAAAATCGAAATGTTA+AGG | + | chr1_1:28938090-28938109 | Msa0017450:CDS | 25.0% |
| ! | TGGAAAAATCGAAATGTTAA+GGG | + | chr1_1:28938091-28938110 | Msa0017450:CDS | 25.0% |
| !!! | CAAACTGGTTTTTATCAAAA+AGG | - | chr1_1:28936515-28936534 | None:intergenic | 25.0% |
| !! | CTTTTTGATAAAAACCAGTT+TGG | + | chr1_1:28936513-28936532 | Msa0017450:intron | 25.0% |
| !! | AGATCATGATGATGATATTA+TGG | + | chr1_1:28937037-28937056 | Msa0017450:CDS | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | - | chr1_1:28937272-28937291 | None:intergenic | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | + | chr1_1:28937272-28937291 | Msa0017450:intron | 25.0% |
| !! | ATATATTTTGCAATGAAGTG+TGG | - | chr1_1:28937375-28937394 | None:intergenic | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | - | chr1_1:28937408-28937427 | None:intergenic | 25.0% |
| ! | AATAAAGAGAATAACTAGAC+AGG | - | chr1_1:28937575-28937594 | None:intergenic | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | + | chr1_1:28937700-28937719 | Msa0017450:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | - | chr1_1:28937707-28937726 | None:intergenic | 25.0% |
| ! | GAAAAATGAAAGGTAAAGAT+TGG | - | chr1_1:28937792-28937811 | None:intergenic | 25.0% |
| !! | CATTTTTCACTATTATGAAG+TGG | + | chr1_1:28937804-28937823 | Msa0017450:intron | 25.0% |
| ! | ATCAACACATTAAACAAAAG+TGG | - | chr1_1:28937833-28937852 | None:intergenic | 25.0% |
| ! | ATGGAAAAATCGAAATGTTA+AGG | + | chr1_1:28938090-28938109 | Msa0017450:CDS | 25.0% |
| ! | TGGAAAAATCGAAATGTTAA+GGG | + | chr1_1:28938091-28938110 | Msa0017450:CDS | 25.0% |
| ! | TTGCAACCAAATATTTTTCC+AGG | + | chr1_1:28936401-28936420 | Msa0017450:intron | 30.0% |
| ! | AAAAAAGCACACTGAAAGAA+TGG | + | chr1_1:28936439-28936458 | Msa0017450:CDS | 30.0% |
| AAAAAACATTGGAGAAAGCA+TGG | - | chr1_1:28936489-28936508 | None:intergenic | 30.0% | |
| TATTTCTTTGCATACCAAAC+TGG | - | chr1_1:28936530-28936549 | None:intergenic | 30.0% | |
| !! | TCAAGTTCACAAAAGCATTA+GGG | - | chr1_1:28936641-28936660 | None:intergenic | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | - | chr1_1:28936642-28936661 | None:intergenic | 30.0% |
| TTCAAAAAGGAAGGTCATAA+AGG | + | chr1_1:28936665-28936684 | Msa0017450:CDS | 30.0% | |
| TAGAGACGAAAATTCTTTAG+AGG | + | chr1_1:28936782-28936801 | Msa0017450:CDS | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+AGG | + | chr1_1:28936872-28936891 | Msa0017450:CDS | 30.0% | |
| CATGGAGGAAAATAACAATA+TGG | + | chr1_1:28936902-28936921 | Msa0017450:CDS | 30.0% | |
| AAATAACAATATGGAGGATG+AGG | + | chr1_1:28936911-28936930 | Msa0017450:CDS | 30.0% | |
| CAAGTAAAATTGCAACAACT+TGG | - | chr1_1:28937608-28937627 | None:intergenic | 30.0% | |
| AATTATACTATACCTTGCAG+TGG | - | chr1_1:28937769-28937788 | None:intergenic | 30.0% | |
| !!! | AAGTTGCATTCATCCTTTTT+TGG | + | chr1_1:28937865-28937884 | Msa0017450:intron | 30.0% |
| ATATGTGTTCTGCTTATTTG+TGG | - | chr1_1:28937942-28937961 | None:intergenic | 30.0% | |
| ! | TTGCAACCAAATATTTTTCC+AGG | + | chr1_1:28936401-28936420 | Msa0017450:intron | 30.0% |
| ! | AAAAAAGCACACTGAAAGAA+TGG | + | chr1_1:28936439-28936458 | Msa0017450:CDS | 30.0% |
| AAAAAACATTGGAGAAAGCA+TGG | - | chr1_1:28936489-28936508 | None:intergenic | 30.0% | |
| TATTTCTTTGCATACCAAAC+TGG | - | chr1_1:28936530-28936549 | None:intergenic | 30.0% | |
| !! | TCAAGTTCACAAAAGCATTA+GGG | - | chr1_1:28936641-28936660 | None:intergenic | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | - | chr1_1:28936642-28936661 | None:intergenic | 30.0% |
| TTCAAAAAGGAAGGTCATAA+AGG | + | chr1_1:28936665-28936684 | Msa0017450:CDS | 30.0% | |
| TAGAGACGAAAATTCTTTAG+AGG | + | chr1_1:28936782-28936801 | Msa0017450:CDS | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+AGG | + | chr1_1:28936872-28936891 | Msa0017450:CDS | 30.0% | |
| CATGGAGGAAAATAACAATA+TGG | + | chr1_1:28936902-28936921 | Msa0017450:CDS | 30.0% | |
| AAATAACAATATGGAGGATG+AGG | + | chr1_1:28936911-28936930 | Msa0017450:CDS | 30.0% | |
| CAAGTAAAATTGCAACAACT+TGG | - | chr1_1:28937608-28937627 | None:intergenic | 30.0% | |
| AATTATACTATACCTTGCAG+TGG | - | chr1_1:28937769-28937788 | None:intergenic | 30.0% | |
| !!! | AAGTTGCATTCATCCTTTTT+TGG | + | chr1_1:28937865-28937884 | Msa0017450:intron | 30.0% |
| ATATGTGTTCTGCTTATTTG+TGG | - | chr1_1:28937942-28937961 | None:intergenic | 30.0% | |
| TCATGGCCTGGAAAAATATT+TGG | - | chr1_1:28936410-28936429 | None:intergenic | 35.0% | |
| TGAACTTGATGCGTTCAAAA+AGG | + | chr1_1:28936652-28936671 | Msa0017450:CDS | 35.0% | |
| !!! | GATGAGCTTTATTTTGACGA+TGG | + | chr1_1:28936747-28936766 | Msa0017450:CDS | 35.0% |
| !!! | AGCTTTATTTTGACGATGGT+TGG | + | chr1_1:28936751-28936770 | Msa0017450:CDS | 35.0% |
| ! | AGACGAAAATTCTTTAGAGG+AGG | + | chr1_1:28936785-28936804 | Msa0017450:CDS | 35.0% |
| AAAGAAGAAGGTAAGTGACA+TGG | + | chr1_1:28936884-28936903 | Msa0017450:CDS | 35.0% | |
| GGAGGAAAATAACAATATGG+AGG | + | chr1_1:28936905-28936924 | Msa0017450:CDS | 35.0% | |
| ! | TGCTGCTGATGATGATATTA+TGG | + | chr1_1:28937004-28937023 | Msa0017450:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | + | chr1_1:28937010-28937029 | Msa0017450:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | + | chr1_1:28937010-28937029 | Msa0017450:CDS | 35.0% |
| CGAGAATGAAAGAATGTACA+AGG | + | chr1_1:28937109-28937128 | Msa0017450:CDS | 35.0% | |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | + | chr1_1:28937279-28937298 | Msa0017450:intron | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | + | chr1_1:28937280-28937299 | Msa0017450:intron | 35.0% |
| GCTGAAATGTATATTCAACC+CGG | + | chr1_1:28937345-28937364 | Msa0017450:CDS | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | + | chr1_1:28937395-28937414 | Msa0017450:CDS | 35.0% | |
| TTGTACCAATTCATTAGGTC+TGG | - | chr1_1:28937403-28937422 | None:intergenic | 35.0% | |
| GATAAGAAATGACAAGTCGA+AGG | - | chr1_1:28937531-28937550 | None:intergenic | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | - | chr1_1:28937679-28937698 | None:intergenic | 35.0% | |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | + | chr1_1:28937875-28937894 | Msa0017450:intron | 35.0% |
| TGTCCTGTCATAACCAAAAA+AGG | - | chr1_1:28937881-28937900 | None:intergenic | 35.0% | |
| AGAACACATATCGAAAAGAG+AGG | + | chr1_1:28937951-28937970 | Msa0017450:CDS | 35.0% | |
| TCATGGCCTGGAAAAATATT+TGG | - | chr1_1:28936410-28936429 | None:intergenic | 35.0% | |
| TGAACTTGATGCGTTCAAAA+AGG | + | chr1_1:28936652-28936671 | Msa0017450:CDS | 35.0% | |
| !!! | GATGAGCTTTATTTTGACGA+TGG | + | chr1_1:28936747-28936766 | Msa0017450:CDS | 35.0% |
| !!! | AGCTTTATTTTGACGATGGT+TGG | + | chr1_1:28936751-28936770 | Msa0017450:CDS | 35.0% |
| ! | AGACGAAAATTCTTTAGAGG+AGG | + | chr1_1:28936785-28936804 | Msa0017450:CDS | 35.0% |
| AAAGAAGAAGGTAAGTGACA+TGG | + | chr1_1:28936884-28936903 | Msa0017450:CDS | 35.0% | |
| GGAGGAAAATAACAATATGG+AGG | + | chr1_1:28936905-28936924 | Msa0017450:CDS | 35.0% | |
| ! | TGCTGCTGATGATGATATTA+TGG | + | chr1_1:28937004-28937023 | Msa0017450:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | + | chr1_1:28937010-28937029 | Msa0017450:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | + | chr1_1:28937010-28937029 | Msa0017450:CDS | 35.0% |
| CGAGAATGAAAGAATGTACA+AGG | + | chr1_1:28937109-28937128 | Msa0017450:CDS | 35.0% | |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | + | chr1_1:28937279-28937298 | Msa0017450:intron | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | + | chr1_1:28937280-28937299 | Msa0017450:intron | 35.0% |
| GCTGAAATGTATATTCAACC+CGG | + | chr1_1:28937345-28937364 | Msa0017450:CDS | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | + | chr1_1:28937395-28937414 | Msa0017450:CDS | 35.0% | |
| TTGTACCAATTCATTAGGTC+TGG | - | chr1_1:28937403-28937422 | None:intergenic | 35.0% | |
| GATAAGAAATGACAAGTCGA+AGG | - | chr1_1:28937531-28937550 | None:intergenic | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | - | chr1_1:28937679-28937698 | None:intergenic | 35.0% | |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | + | chr1_1:28937875-28937894 | Msa0017450:intron | 35.0% |
| TGTCCTGTCATAACCAAAAA+AGG | - | chr1_1:28937881-28937900 | None:intergenic | 35.0% | |
| AGAACACATATCGAAAAGAG+AGG | + | chr1_1:28937951-28937970 | Msa0017450:CDS | 35.0% | |
| TCCTCGGAATTAAGATGTGA+TGG | - | chr1_1:28936331-28936350 | None:intergenic | 40.0% | |
| AAGTTCCTCGGAAATTTCCT+CGG | + | chr1_1:28936370-28936389 | Msa0017450:intron | 40.0% | |
| AAATACCGAGGAAATTTCCG+AGG | - | chr1_1:28936378-28936397 | None:intergenic | 40.0% | |
| TCGGAAATTTCCTCGGTATT+TGG | + | chr1_1:28936377-28936396 | Msa0017450:intron | 40.0% | |
| !!! | TTTCAGTGTGCTTTTTTCCG+AGG | - | chr1_1:28936436-28936455 | None:intergenic | 40.0% |
| CTTGATGCGTTCAAAAAGGA+AGG | + | chr1_1:28936656-28936675 | Msa0017450:CDS | 40.0% | |
| TTCATCCTAAGAGATCGTAG+AGG | + | chr1_1:28936690-28936709 | Msa0017450:CDS | 40.0% | |
| GTCATCGTCATCATCATCAT+CGG | - | chr1_1:28936952-28936971 | None:intergenic | 40.0% | |
| TGCAATGAAGTGTGGATTTC+CGG | - | chr1_1:28937367-28937386 | None:intergenic | 40.0% | |
| TAGTCCATTTGCTTAACCCT+AGG | + | chr1_1:28937481-28937500 | Msa0017450:intron | 40.0% | |
| TCTACCTAGGGTTAAGCAAA+TGG | - | chr1_1:28937488-28937507 | None:intergenic | 40.0% | |
| ATTTGCTTAACCCTAGGTAG+AGG | + | chr1_1:28937487-28937506 | Msa0017450:intron | 40.0% | |
| TAGACAGGCATAGAGTACAA+AGG | - | chr1_1:28937560-28937579 | None:intergenic | 40.0% | |
| ! | TGACATGTTTTGTGAAGCAG+AGG | - | chr1_1:28937733-28937752 | None:intergenic | 40.0% |
| TTGTGGCAAGATGTGATGAT+AGG | - | chr1_1:28937925-28937944 | None:intergenic | 40.0% | |
| ! | TGTTAAGGGTGCACATTGTT+AGG | + | chr1_1:28938105-28938124 | Msa0017450:CDS | 40.0% |
| TCCTCGGAATTAAGATGTGA+TGG | - | chr1_1:28936331-28936350 | None:intergenic | 40.0% | |
| AAGTTCCTCGGAAATTTCCT+CGG | + | chr1_1:28936370-28936389 | Msa0017450:intron | 40.0% | |
| AAATACCGAGGAAATTTCCG+AGG | - | chr1_1:28936378-28936397 | None:intergenic | 40.0% | |
| TCGGAAATTTCCTCGGTATT+TGG | + | chr1_1:28936377-28936396 | Msa0017450:intron | 40.0% | |
| !!! | TTTCAGTGTGCTTTTTTCCG+AGG | - | chr1_1:28936436-28936455 | None:intergenic | 40.0% |
| CTTGATGCGTTCAAAAAGGA+AGG | + | chr1_1:28936656-28936675 | Msa0017450:CDS | 40.0% | |
| TTCATCCTAAGAGATCGTAG+AGG | + | chr1_1:28936690-28936709 | Msa0017450:CDS | 40.0% | |
| GTCATCGTCATCATCATCAT+CGG | - | chr1_1:28936952-28936971 | None:intergenic | 40.0% | |
| TGCAATGAAGTGTGGATTTC+CGG | - | chr1_1:28937367-28937386 | None:intergenic | 40.0% | |
| TAGTCCATTTGCTTAACCCT+AGG | + | chr1_1:28937481-28937500 | Msa0017450:intron | 40.0% | |
| TCTACCTAGGGTTAAGCAAA+TGG | - | chr1_1:28937488-28937507 | None:intergenic | 40.0% | |
| ATTTGCTTAACCCTAGGTAG+AGG | + | chr1_1:28937487-28937506 | Msa0017450:intron | 40.0% | |
| TAGACAGGCATAGAGTACAA+AGG | - | chr1_1:28937560-28937579 | None:intergenic | 40.0% | |
| ! | TGACATGTTTTGTGAAGCAG+AGG | - | chr1_1:28937733-28937752 | None:intergenic | 40.0% |
| TTGTGGCAAGATGTGATGAT+AGG | - | chr1_1:28937925-28937944 | None:intergenic | 40.0% | |
| ! | TGTTAAGGGTGCACATTGTT+AGG | + | chr1_1:28938105-28938124 | Msa0017450:CDS | 40.0% |
| GCCATCACATCTTAATTCCG+AGG | + | chr1_1:28936327-28936346 | Msa0017450:intron | 45.0% | |
| ATTCCGAGGACATGTTTCCT+CGG | + | chr1_1:28936341-28936360 | Msa0017450:intron | 45.0% | |
| TTTCCGAGGAAACATGTCCT+CGG | - | chr1_1:28936347-28936366 | None:intergenic | 45.0% | |
| CCTCGGAAACAAAAGTTCCT+CGG | + | chr1_1:28936358-28936377 | Msa0017450:intron | 45.0% | |
| TGGTTGCAATCCAAATACCG+AGG | - | chr1_1:28936390-28936409 | None:intergenic | 45.0% | |
| !!! | GCTTTTTTCCGAGGAACTCA+TGG | - | chr1_1:28936427-28936446 | None:intergenic | 45.0% |
| CTCTTCCTCTACGATCTCTT+AGG | - | chr1_1:28936698-28936717 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | + | chr1_1:28936700-28936719 | Msa0017450:CDS | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | + | chr1_1:28936723-28936742 | Msa0017450:CDS | 45.0% | |
| GAAGAAGGTAAGTGACATGG+AGG | + | chr1_1:28936887-28936906 | Msa0017450:CDS | 45.0% | |
| CAATATGGAGGATGAGGAAG+AGG | + | chr1_1:28936917-28936936 | Msa0017450:CDS | 45.0% | |
| ! | TGATGATGATGACGATGACG+AGG | + | chr1_1:28936953-28936972 | Msa0017450:CDS | 45.0% |
| GCATCAATTTCGTCGTCTTC+AGG | - | chr1_1:28937327-28937346 | None:intergenic | 45.0% | |
| GCAATGAAGTGTGGATTTCC+GGG | - | chr1_1:28937366-28937385 | None:intergenic | 45.0% | |
| TCGACTAACTCCTCTACCTA+GGG | - | chr1_1:28937500-28937519 | None:intergenic | 45.0% | |
| TTCGACTAACTCCTCTACCT+AGG | - | chr1_1:28937501-28937520 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATTCAA+GGG | - | chr1_1:28937756-28937775 | None:intergenic | 45.0% | |
| GAGATTGTGCTGCATGAAGA+TGG | + | chr1_1:28938071-28938090 | Msa0017450:CDS | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | + | chr1_1:28938109-28938128 | Msa0017450:CDS | 45.0% |
| GCCATCACATCTTAATTCCG+AGG | + | chr1_1:28936327-28936346 | Msa0017450:intron | 45.0% | |
| ATTCCGAGGACATGTTTCCT+CGG | + | chr1_1:28936341-28936360 | Msa0017450:intron | 45.0% | |
| TTTCCGAGGAAACATGTCCT+CGG | - | chr1_1:28936347-28936366 | None:intergenic | 45.0% | |
| CCTCGGAAACAAAAGTTCCT+CGG | + | chr1_1:28936358-28936377 | Msa0017450:intron | 45.0% | |
| TGGTTGCAATCCAAATACCG+AGG | - | chr1_1:28936390-28936409 | None:intergenic | 45.0% | |
| !!! | GCTTTTTTCCGAGGAACTCA+TGG | - | chr1_1:28936427-28936446 | None:intergenic | 45.0% |
| CTCTTCCTCTACGATCTCTT+AGG | - | chr1_1:28936698-28936717 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | + | chr1_1:28936700-28936719 | Msa0017450:CDS | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | + | chr1_1:28936723-28936742 | Msa0017450:CDS | 45.0% | |
| GAAGAAGGTAAGTGACATGG+AGG | + | chr1_1:28936887-28936906 | Msa0017450:CDS | 45.0% | |
| CAATATGGAGGATGAGGAAG+AGG | + | chr1_1:28936917-28936936 | Msa0017450:CDS | 45.0% | |
| ! | TGATGATGATGACGATGACG+AGG | + | chr1_1:28936953-28936972 | Msa0017450:CDS | 45.0% |
| GCATCAATTTCGTCGTCTTC+AGG | - | chr1_1:28937327-28937346 | None:intergenic | 45.0% | |
| GCAATGAAGTGTGGATTTCC+GGG | - | chr1_1:28937366-28937385 | None:intergenic | 45.0% | |
| TCGACTAACTCCTCTACCTA+GGG | - | chr1_1:28937500-28937519 | None:intergenic | 45.0% | |
| TTCGACTAACTCCTCTACCT+AGG | - | chr1_1:28937501-28937520 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATTCAA+GGG | - | chr1_1:28937756-28937775 | None:intergenic | 45.0% | |
| GAGATTGTGCTGCATGAAGA+TGG | + | chr1_1:28938071-28938090 | Msa0017450:CDS | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | + | chr1_1:28938109-28938128 | Msa0017450:CDS | 45.0% |
| AACACAGACTGACGAACCTG+CGG | - | chr1_1:28936304-28936323 | None:intergenic | 50.0% | |
| !! | CCGAGGAACTTTTGTTTCCG+AGG | - | chr1_1:28936361-28936380 | None:intergenic | 50.0% |
| TTTCCAGGCCATGAGTTCCT+CGG | + | chr1_1:28936416-28936435 | Msa0017450:intron | 50.0% | |
| ATGGAGGATGAGGAAGAGGA+CGG | + | chr1_1:28936921-28936940 | Msa0017450:CDS | 50.0% | |
| AGAACCTGCAAGTGCAAAGC+TGG | + | chr1_1:28937161-28937180 | Msa0017450:CDS | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | - | chr1_1:28937168-28937187 | None:intergenic | 50.0% | |
| CCTTGCAGTGGCAACATTCA+AGG | - | chr1_1:28937757-28937776 | None:intergenic | 50.0% | |
| CCTTGAATGTTGCCACTGCA+AGG | + | chr1_1:28937754-28937773 | Msa0017450:CDS | 50.0% | |
| CATCTCTCCACGTACGTACT+TGG | - | chr1_1:28937977-28937996 | None:intergenic | 50.0% | |
| CAAGTACGTACGTGGAGAGA+TGG | + | chr1_1:28937975-28937994 | Msa0017450:CDS | 50.0% | |
| ATGGTCGAGTACGTGTGCTA+GGG | + | chr1_1:28937994-28938013 | Msa0017450:CDS | 50.0% | |
| AACACAGACTGACGAACCTG+CGG | - | chr1_1:28936304-28936323 | None:intergenic | 50.0% | |
| !! | CCGAGGAACTTTTGTTTCCG+AGG | - | chr1_1:28936361-28936380 | None:intergenic | 50.0% |
| TTTCCAGGCCATGAGTTCCT+CGG | + | chr1_1:28936416-28936435 | Msa0017450:intron | 50.0% | |
| ATGGAGGATGAGGAAGAGGA+CGG | + | chr1_1:28936921-28936940 | Msa0017450:CDS | 50.0% | |
| AGAACCTGCAAGTGCAAAGC+TGG | + | chr1_1:28937161-28937180 | Msa0017450:CDS | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | - | chr1_1:28937168-28937187 | None:intergenic | 50.0% | |
| CCTTGCAGTGGCAACATTCA+AGG | - | chr1_1:28937757-28937776 | None:intergenic | 50.0% | |
| CCTTGAATGTTGCCACTGCA+AGG | + | chr1_1:28937754-28937773 | Msa0017450:CDS | 50.0% | |
| CATCTCTCCACGTACGTACT+TGG | - | chr1_1:28937977-28937996 | None:intergenic | 50.0% | |
| CAAGTACGTACGTGGAGAGA+TGG | + | chr1_1:28937975-28937994 | Msa0017450:CDS | 50.0% | |
| ATGGTCGAGTACGTGTGCTA+GGG | + | chr1_1:28937994-28938013 | Msa0017450:CDS | 50.0% | |
| TTTCCGAGGAACTCATGGCC+TGG | - | chr1_1:28936422-28936441 | None:intergenic | 55.0% | |
| GATGAGGAAGAGGACGGTGA+TGG | + | chr1_1:28936927-28936946 | Msa0017450:CDS | 55.0% | |
| AGAGAGGCCAAGTACGTACG+TGG | + | chr1_1:28937967-28937986 | Msa0017450:CDS | 55.0% | |
| GATGGTCGAGTACGTGTGCT+AGG | + | chr1_1:28937993-28938012 | Msa0017450:CDS | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | + | chr1_1:28937998-28938017 | Msa0017450:CDS | 55.0% | |
| TTTCCGAGGAACTCATGGCC+TGG | - | chr1_1:28936422-28936441 | None:intergenic | 55.0% | |
| GATGAGGAAGAGGACGGTGA+TGG | + | chr1_1:28936927-28936946 | Msa0017450:CDS | 55.0% | |
| AGAGAGGCCAAGTACGTACG+TGG | + | chr1_1:28937967-28937986 | Msa0017450:CDS | 55.0% | |
| GATGGTCGAGTACGTGTGCT+AGG | + | chr1_1:28937993-28938012 | Msa0017450:CDS | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | + | chr1_1:28937998-28938017 | Msa0017450:CDS | 55.0% | |
| ACTTCTATGTCAGCCGCCGC+AGG | + | chr1_1:28936285-28936304 | Msa0017450:CDS | 60.0% | |
| ACAGACTGACGAACCTGCGG+CGG | - | chr1_1:28936301-28936320 | None:intergenic | 60.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | + | chr1_1:28937997-28938016 | Msa0017450:CDS | 60.0% | |
| ACTTCTATGTCAGCCGCCGC+AGG | + | chr1_1:28936285-28936304 | Msa0017450:CDS | 60.0% | |
| ACAGACTGACGAACCTGCGG+CGG | - | chr1_1:28936301-28936320 | None:intergenic | 60.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | + | chr1_1:28937997-28938016 | Msa0017450:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 28936276 | 28938136 | 28936276 | ID=Msa0017450;Name=Msa0017450 |
| chr1_1 | mRNA | 28936276 | 28938136 | 28936276 | ID=Msa0017450-mRNA-1;Parent=Msa0017450;Name=Msa0017450-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.83|1|1|6|0|353 |
| chr1_1 | exon | 28936276 | 28936306 | 28936276 | ID=Msa0017450-mRNA-1:exon:9667;Parent=Msa0017450-mRNA-1 |
| chr1_1 | exon | 28936423 | 28936460 | 28936423 | ID=Msa0017450-mRNA-1:exon:9668;Parent=Msa0017450-mRNA-1 |
| chr1_1 | exon | 28936633 | 28937182 | 28936633 | ID=Msa0017450-mRNA-1:exon:9669;Parent=Msa0017450-mRNA-1 |
| chr1_1 | exon | 28937292 | 28937416 | 28937292 | ID=Msa0017450-mRNA-1:exon:9670;Parent=Msa0017450-mRNA-1 |
| chr1_1 | exon | 28937698 | 28937775 | 28937698 | ID=Msa0017450-mRNA-1:exon:9671;Parent=Msa0017450-mRNA-1 |
| chr1_1 | exon | 28937897 | 28938136 | 28937897 | ID=Msa0017450-mRNA-1:exon:9672;Parent=Msa0017450-mRNA-1 |
| chr1_1 | CDS | 28936276 | 28936306 | 28936276 | ID=Msa0017450-mRNA-1:cds;Parent=Msa0017450-mRNA-1 |
| chr1_1 | CDS | 28936423 | 28936460 | 28936423 | ID=Msa0017450-mRNA-1:cds;Parent=Msa0017450-mRNA-1 |
| chr1_1 | CDS | 28936633 | 28937182 | 28936633 | ID=Msa0017450-mRNA-1:cds;Parent=Msa0017450-mRNA-1 |
| chr1_1 | CDS | 28937292 | 28937416 | 28937292 | ID=Msa0017450-mRNA-1:cds;Parent=Msa0017450-mRNA-1 |
| chr1_1 | CDS | 28937698 | 28937775 | 28937698 | ID=Msa0017450-mRNA-1:cds;Parent=Msa0017450-mRNA-1 |
| chr1_1 | CDS | 28937897 | 28938136 | 28937897 | ID=Msa0017450-mRNA-1:cds;Parent=Msa0017450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
