AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017620 MtrunA17_Chr1g0191141 81.638 1111 144 8 28 1092 7 1103 0.0 1820
Msa0017620 MtrunA17_Chr7g0224051 63.256 1124 318 18 55 1091 1 1116 0.0 1343
Msa0017620 MtrunA17_Chr3g0114161 68.341 856 210 11 294 1091 395 1247 0.0 1125
Msa0017620 MtrunA17_Chr3g0114161 62.162 296 90 6 28 302 24 318 1.97e-101 347
Msa0017620 MtrunA17_Chr5g0437621 56.323 854 305 18 299 1091 457 1303 0.0 883
Msa0017620 MtrunA17_Chr5g0437621 41.883 308 128 8 29 301 19 310 1.71e-49 192
Msa0017620 MtrunA17_Chr7g0233031 32.584 712 401 16 418 1078 549 1232 5.42e-99 341
Msa0017620 MtrunA17_Chr7g0233021 33.564 721 369 19 418 1072 537 1213 1.21e-98 339
Msa0017620 MtrunA17_Chr7g0225791 32.432 703 402 16 418 1072 591 1268 5.87e-98 338
Msa0017620 MtrunA17_Chr7g0232971 33.379 728 395 21 418 1087 598 1293 3.31e-97 336
Msa0017620 MtrunA17_Chr4g0047081 32.222 720 394 17 418 1082 548 1228 2.15e-95 330
Msa0017620 MtrunA17_Chr2g0296421 30.072 695 391 20 384 1047 371 1001 2.01e-78 279
Msa0017620 MtrunA17_Chr8g0352361 29.883 686 381 21 396 1047 233 852 8.55e-76 269
Msa0017620 MtrunA17_Chr7g0232991 30.933 611 346 16 526 1078 54 646 2.17e-73 257
Msa0017620 MtrunA17_Chr7g0224031 55.708 219 63 2 687 871 24 242 2.00e-69 232
Msa0017620 MtrunA17_Chr7g0233001 30.996 542 289 14 595 1082 3 513 5.33e-59 212
Msa0017620 MtrunA17_Chr7g0224021 70.536 112 31 1 515 626 2 111 1.83e-47 165
Msa0017620 MtrunA17_Chr2g0320781 36.437 247 141 6 800 1040 4 240 1.39e-38 144
Msa0017620 MtrunA17_Chr1g0190381 34.868 152 89 3 910 1052 205 355 3.55e-18 89.7
Msa0017620 MtrunA17_Chr8g0384531 32.192 146 92 3 895 1039 741 880 2.98e-17 87.8
Msa0017620 MtrunA17_Chr1g0190391 27.638 199 116 6 538 732 576 750 5.71e-16 83.2
Msa0017620 MtrunA17_Chr4g0052341 24.571 525 303 23 575 1063 763 1230 2.80e-15 81.6
Msa0017620 MtrunA17_Chr5g0393461 32.353 136 90 1 942 1077 583 716 1.44e-14 79.0
Msa0017620 MtrunA17_Chr4g0040301 31.138 167 102 4 902 1061 389 549 9.30e-14 75.9
Msa0017620 MtrunA17_Chr5g0403921 29.000 200 126 5 892 1090 504 688 1.85e-13 75.1
Msa0017620 MtrunA17_Chr3g0114111 88.235 34 4 0 1045 1078 1 34 1.74e-12 63.9
Msa0017620 MtrunA17_Chr5g0394201 30.055 183 115 4 902 1079 676 850 5.87e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017620 AT3G42670.4 54.115 802 289 13 354 1092 472 1257 0.0 830
Msa0017620 AT3G42670.4 34.982 283 150 8 29 292 18 285 1.83e-36 150
Msa0017620 AT3G42670.2 54.115 802 287 13 354 1092 472 1255 0.0 829
Msa0017620 AT3G42670.2 34.982 283 150 8 29 292 18 285 1.72e-36 150
Msa0017620 AT3G42670.3 54.115 802 287 13 354 1092 472 1255 0.0 829
Msa0017620 AT3G42670.3 34.982 283 150 8 29 292 18 285 1.72e-36 150
Msa0017620 AT3G42670.1 54.115 802 287 13 354 1092 472 1255 0.0 829
Msa0017620 AT3G42670.1 34.982 283 150 8 29 292 18 285 1.72e-36 150
Msa0017620 AT5G20420.1 52.619 821 320 11 333 1092 449 1261 0.0 821
Msa0017620 AT5G20420.1 34.007 297 143 8 29 294 18 292 4.74e-37 152
Msa0017620 AT1G05490.1 31.171 709 419 20 418 1076 695 1384 1.32e-89 316
Msa0017620 AT3G24340.1 30.747 696 430 15 407 1080 449 1114 4.35e-88 308
Msa0017620 AT2G16390.2 29.496 695 377 20 396 1047 226 850 3.92e-72 258
Msa0017620 AT2G16390.1 29.496 695 377 20 396 1047 223 847 4.50e-72 258
Msa0017620 AT2G21450.3 29.448 652 342 21 453 1047 92 682 2.04e-67 241
Msa0017620 AT2G21450.1 28.988 652 345 20 453 1047 183 773 3.10e-67 243
Msa0017620 AT2G21450.2 28.988 652 345 20 453 1047 190 780 3.92e-67 243
Msa0017620 AT3G19210.2 23.924 581 333 24 544 1071 180 704 2.52e-19 94.7
Msa0017620 AT1G08600.4 31.250 192 102 9 544 730 719 885 3.53e-17 88.2
Msa0017620 AT1G08600.4 34.356 163 95 4 899 1052 1123 1282 3.71e-17 87.8
Msa0017620 AT1G08600.3 31.250 192 102 9 544 730 719 885 3.53e-17 88.2
Msa0017620 AT1G08600.3 34.356 163 95 4 899 1052 1123 1282 3.71e-17 87.8
Msa0017620 AT1G08600.2 31.250 192 102 9 544 730 719 885 3.53e-17 88.2
Msa0017620 AT1G08600.2 34.356 163 95 4 899 1052 1123 1282 3.71e-17 87.8
Msa0017620 AT1G08600.1 34.356 163 95 4 899 1052 1102 1261 4.12e-17 87.8
Msa0017620 AT1G08600.1 37.931 87 47 3 544 627 719 801 1.45e-11 69.7
Msa0017620 AT3G19210.1 35.115 131 83 1 941 1071 578 706 1.73e-15 82.0
Msa0017620 AT3G19210.3 35.115 131 83 1 941 1071 578 706 2.66e-15 81.3
Msa0017620 AT1G03750.1 30.387 181 112 5 889 1061 523 697 4.64e-15 80.9
Msa0017620 AT5G63950.1 30.822 146 94 4 895 1039 733 872 3.28e-14 78.2
Msa0017620 AT5G63950.2 30.822 146 94 4 895 1039 716 855 3.40e-14 78.2
Msa0017620 AT4G31900.3 23.152 514 307 19 534 1030 214 656 5.07e-14 77.4
Msa0017620 AT4G31900.1 23.152 514 307 19 534 1030 214 656 7.70e-14 77.0
Msa0017620 AT4G31900.2 23.002 513 309 18 534 1030 173 615 9.80e-14 76.6
Msa0017620 AT3G57300.1 31.884 138 88 3 911 1048 1224 1355 1.05e-11 70.1
Msa0017620 AT3G57300.4 31.884 138 88 3 911 1048 1224 1355 1.05e-11 70.1
Msa0017620 AT3G57300.2 31.884 138 88 3 911 1048 1257 1388 1.44e-11 69.7
Msa0017620 AT2G18760.4 30.657 137 89 3 911 1047 745 875 1.72e-11 69.3
Msa0017620 AT2G18760.1 30.657 137 89 3 911 1047 745 875 1.72e-11 69.3
Msa0017620 AT2G18760.2 30.657 137 89 3 911 1047 745 875 1.72e-11 69.3
Msa0017620 AT2G18760.7 30.657 137 89 3 911 1047 745 875 1.72e-11 69.3
Msa0017620 AT2G18760.5 30.657 137 89 3 911 1047 745 875 1.72e-11 69.3
Msa0017620 AT2G18760.6 30.657 137 89 3 911 1047 745 875 1.72e-11 69.3
Msa0017620 AT2G18760.3 30.657 137 89 3 911 1047 804 934 1.80e-11 69.3

Find 167 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAGAAGGCGGTTGTTTA+AGG 0.189420 1_1:+29369375 Msa0017620:CDS
CCAGGCAGAACCATTGATTT+TGG 0.203037 1_1:-29371037 None:intergenic
AGAACTTCGTGAATAAATTT+TGG 0.216798 1_1:-29371396 None:intergenic
TGCTTGACACCATTAGAATT+TGG 0.218550 1_1:-29371064 None:intergenic
AACTTTGATGTGGTACTTCT+AGG 0.221583 1_1:-29371268 None:intergenic
CTTATCTTCTGTTCTCATTA+AGG 0.232667 1_1:-29371167 None:intergenic
TCAACCTGGTCAAGAGAAAA+TGG 0.242007 1_1:+29372220 Msa0017620:CDS
TATCGATTGGATGAACAAAT+TGG 0.242680 1_1:+29370124 Msa0017620:CDS
ATATGGATTTGATAGCTTTA+TGG 0.245952 1_1:+29369401 Msa0017620:CDS
AATTATTTCGTTGAAGTCTT+TGG 0.252919 1_1:-29368898 None:intergenic
AGACCTCCAATTTCGCTTCT+TGG 0.261495 1_1:-29369232 None:intergenic
ACATCAAGTTATCTTCTTGA+TGG 0.278990 1_1:+29369703 Msa0017620:CDS
GGTAGGTGACAAGGCTAAAA+TGG 0.298106 1_1:+29370549 Msa0017620:intron
TAATGGTGTCAAGCATGATT+TGG 0.304673 1_1:+29371072 Msa0017620:CDS
TATGGATTTGATAGCTTTAT+GGG 0.316460 1_1:+29369402 Msa0017620:CDS
CCAATGCCAAGAAGCGAAAT+TGG 0.318140 1_1:+29369226 Msa0017620:CDS
CCAAAGAAAATGATAGTGTT+TGG 0.318198 1_1:+29370675 Msa0017620:CDS
TTGAAGTTCAAAACATTCAT+AGG 0.322383 1_1:-29369151 None:intergenic
AGCAAATTTGATTGGAGAAA+AGG 0.328059 1_1:+29371849 Msa0017620:CDS
TTGGTGTCGTTGAATGTATC+TGG 0.339974 1_1:-29371018 None:intergenic
GCATAAACTGCAAAAGAAAA+TGG 0.345102 1_1:+29371692 Msa0017620:CDS
AGTTCTTCTGATACTCTTCC+TGG 0.348560 1_1:+29371615 Msa0017620:CDS
GCTCTTCATTGCCACAATCT+AGG 0.360216 1_1:+29368990 Msa0017620:CDS
CCAATTTCGCTTCTTGGCAT+TGG 0.361638 1_1:-29369226 None:intergenic
ATACGATAATAACGCTATAA+TGG 0.368178 1_1:+29368034 Msa0017620:CDS
GGTGGTGATAATGTTTCTTC+AGG 0.374283 1_1:+29369322 Msa0017620:CDS
TCACTGATAGTTGAATCTTC+TGG 0.376275 1_1:-29369574 None:intergenic
AAAATTTATTCACGAAGTTC+TGG 0.379765 1_1:+29371398 Msa0017620:CDS
TTCATAGGACTACTAATATT+AGG 0.382189 1_1:-29369136 None:intergenic
ATATGTCAATTCCAGGTCTT+AGG 0.387141 1_1:-29368533 None:intergenic
CATGTGTAGAGTGTGGTCTT+TGG 0.395080 1_1:-29370932 None:intergenic
GCGGTTGTTTAAGGAGCATA+TGG 0.396953 1_1:+29369384 Msa0017620:CDS
TAGGACAAAGCAAATTTGAT+TGG 0.397697 1_1:+29371841 Msa0017620:CDS
GCTCAAAACAAATCTTACTT+TGG 0.400942 1_1:-29371874 None:intergenic
AATTCCAGGTCTTAGGAAAC+TGG 0.403179 1_1:-29368526 None:intergenic
CCTGGAGTTCCAAATTCTAA+TGG 0.403216 1_1:+29371055 Msa0017620:CDS
AAGAAAATGGCGGGCTGTAC+CGG 0.405933 1_1:+29371705 Msa0017620:CDS
CAAAGAAAATGATAGTGTTT+GGG 0.407919 1_1:+29370676 Msa0017620:CDS
GGTAGAAAATCCTGATGATT+TGG 0.409165 1_1:+29369648 Msa0017620:CDS
GTCTTTGGAGCTAGGACTAA+TGG 0.409580 1_1:-29370917 None:intergenic
AAAGAGATTCTGCAACTAAC+TGG 0.420585 1_1:+29372008 Msa0017620:CDS
CTCAACCTCAAGAGAGTAAC+CGG 0.423138 1_1:-29371724 None:intergenic
ATCATGTTCACATGTTTCCT+TGG 0.426716 1_1:-29370101 None:intergenic
CACCCTAGTGTTCTTGTCAT+GGG 0.427375 1_1:+29371127 Msa0017620:CDS
TCAACTGATGCTACTGATCT+TGG 0.430086 1_1:+29370641 Msa0017620:CDS
ACGCGCGAGAAAATTCTTCT+TGG 0.431056 1_1:+29371485 Msa0017620:CDS
AAGGAAGAGGATAATGTGAT+TGG 0.437162 1_1:+29368854 Msa0017620:CDS
CATTACGTAGATTGTAATGA+TGG 0.450016 1_1:+29369289 Msa0017620:CDS
AAGAAAAGAGATGATGAGAA+AGG 0.450749 1_1:-29370861 None:intergenic
ACACCCTAGTGTTCTTGTCA+TGG 0.450907 1_1:+29371126 Msa0017620:CDS
TCTATATTTATCTTCCTCCA+TGG 0.451446 1_1:-29372273 None:intergenic
TTGAACTTCAAATCAGAAAA+CGG 0.451497 1_1:+29369163 Msa0017620:CDS
CTGATGATTTGGCTGGCATA+TGG 0.454793 1_1:+29369659 Msa0017620:CDS
AGCACAGATATGTCAATTCC+AGG 0.458031 1_1:-29368540 None:intergenic
TACTATGAGTTTGTTGTGCA+TGG 0.462547 1_1:-29368449 None:intergenic
TACGTAATGTTCAAGCTGTA+TGG 0.462591 1_1:-29369275 None:intergenic
TCAATCAATGCTTGTTCTGA+AGG 0.465693 1_1:+29372110 Msa0017620:CDS
TATCGATGATCATGAAGAAC+AGG 0.466478 1_1:+29369471 Msa0017620:CDS
GCATTTGAAGCAGTATTGAA+TGG 0.467351 1_1:+29368366 Msa0017620:intron
AACGCTATAATGGATATTCA+TGG 0.479424 1_1:+29368044 Msa0017620:CDS
GTATATCACTTGTTGATGAC+TGG 0.488667 1_1:+29372248 Msa0017620:CDS
AGAGTGTGGTCTTTGGAGCT+AGG 0.489103 1_1:-29370925 None:intergenic
CCATTAGAATTTGGAACTCC+AGG 0.495262 1_1:-29371055 None:intergenic
TACCGCGTCATCTTTAAAGA+AGG 0.495527 1_1:+29369054 Msa0017620:CDS
CATATGCCAGCCAAATCATC+AGG 0.497067 1_1:-29369658 None:intergenic
ACGTGTGATGAGCAAGGAAA+AGG 0.497284 1_1:+29371905 Msa0017620:CDS
AGATTGTAATGATGGAAAGT+TGG 0.505546 1_1:+29369297 Msa0017620:CDS
AATCTTCTCAGCTTGCCATT+CGG 0.505551 1_1:-29372360 None:intergenic
CAAGCTTGTGCATCAAGTCA+TGG 0.509179 1_1:+29369105 Msa0017620:CDS
TATTTCGTTGAAGTCTTTGG+AGG 0.510126 1_1:-29368895 None:intergenic
GTAATTTGTCATCAGACATC+CGG 0.513031 1_1:+29368469 Msa0017620:CDS
GCGCATGGCTAAAGCATTGA+GGG 0.513248 1_1:+29371207 Msa0017620:CDS
TGCTCCAGTTTCCTAAGACC+TGG 0.515668 1_1:+29368522 Msa0017620:CDS
CATGAAATCGACATGAACAT+TGG 0.516088 1_1:-29368781 None:intergenic
CTTGTTGATGACTGGATCCA+TGG 0.517661 1_1:+29372256 Msa0017620:CDS
GAAGAACTACTTGGAAAGAG+TGG 0.517977 1_1:+29372294 Msa0017620:CDS
AAGCAGTATTGAATGGCTCA+TGG 0.520661 1_1:+29368373 Msa0017620:CDS
GAAACAATGCAGTGAAGATA+CGG 0.522442 1_1:+29370583 Msa0017620:CDS
CCAAAATCAATGGTTCTGCC+TGG 0.525654 1_1:+29371037 Msa0017620:CDS
TGTGTTATATCTCATACTCC+TGG 0.526081 1_1:+29370827 Msa0017620:CDS
TTATCTTCTTGATGGAAATG+AGG 0.528274 1_1:+29369711 Msa0017620:CDS
TGGATAAGATACACCGGCAC+GGG 0.534854 1_1:-29370983 None:intergenic
GCAGGAGAAAGAAAACATAT+CGG 0.535192 1_1:+29369612 Msa0017620:CDS
TGAAGAAAGACAGTTTGAGC+AGG 0.538289 1_1:+29369594 Msa0017620:CDS
TATGATGATCAAGGTTCACT+TGG 0.538490 1_1:+29368812 Msa0017620:CDS
TTCAACGACACCAAAATCAA+TGG 0.539455 1_1:+29371027 Msa0017620:CDS
AAGATCAAGAAAAGCTACTT+CGG 0.541838 1_1:+29368494 Msa0017620:CDS
CTGTACCGGTTACTCTCTTG+AGG 0.542553 1_1:+29371719 Msa0017620:CDS
TGATGATTTGGCTGGCATAT+GGG 0.542896 1_1:+29369660 Msa0017620:CDS
TTCTCAGCTTGCCATTCGGA+AGG 0.544538 1_1:-29372356 None:intergenic
TTGTGCATGGAGGAAATGTA+TGG 0.544715 1_1:-29368436 None:intergenic
AAGCTTGTGCATCAAGTCAT+GGG 0.544950 1_1:+29369106 Msa0017620:CDS
ATATCTCATACTCCTGGAGC+TGG 0.545704 1_1:+29370833 Msa0017620:CDS
AATGTATATATTTGCAAACC+AGG 0.552272 1_1:-29371633 None:intergenic
GAAAATCCTGATGATTTGGC+TGG 0.557990 1_1:+29369652 Msa0017620:CDS
GAAGAAGAGCTGAAGAGACT+AGG 0.559597 1_1:+29371822 Msa0017620:CDS
GTCTAGAAAAGATCAAAAGC+TGG 0.560297 1_1:+29371098 Msa0017620:CDS
ATAAATATAGAAGAACTACT+TGG 0.563098 1_1:+29372285 Msa0017620:CDS
TTAGATTCTAAGTACAGAAG+AGG 0.564016 1_1:+29371426 Msa0017620:CDS
AGATTGAAGATGAAATACTC+AGG 0.564407 1_1:+29372378 Msa0017620:CDS
TGACACAAATAAAGAATCCA+AGG 0.564564 1_1:+29370084 Msa0017620:CDS
AAGAACTACTTGGAAAGAGT+GGG 0.567137 1_1:+29372295 Msa0017620:CDS
GCGCGTGCCTCTAGTAAATG+AGG 0.568077 1_1:-29371468 None:intergenic
TCATCAAGTATCAAGAGTCC+AGG 0.569191 1_1:-29371235 None:intergenic
TAACCCATGACAAGAACACT+AGG 0.569323 1_1:-29371130 None:intergenic
AGCGCATGGCTAAAGCATTG+AGG 0.574680 1_1:+29371206 Msa0017620:CDS
TGCTCATCACACGTGAGATT+AGG 0.575173 1_1:-29371896 None:intergenic
GGAAGTAATCGATGCTTACA+TGG 0.577289 1_1:+29369534 Msa0017620:CDS
GGTTGCATTCGTCATAAGAT+CGG 0.577482 1_1:+29369075 Msa0017620:CDS
GAACATTGGTTATATTTGTG+AGG 0.579746 1_1:-29368767 None:intergenic
GTATCTGGCTTCGACAGCTG+TGG 0.588022 1_1:-29371003 None:intergenic
AAACTGCAAAAGAAAATGGC+GGG 0.588114 1_1:+29371696 Msa0017620:CDS
ATATCCAATGGTAGGTGACA+AGG 0.588447 1_1:+29370540 Msa0017620:intron
AGCAGTATTGAATGGCTCAT+GGG 0.590169 1_1:+29368374 Msa0017620:CDS
AAAGCATTGAGGGAAAGTCC+TGG 0.590693 1_1:+29371217 Msa0017620:CDS
GCACTTCCTCAACTTTGATG+TGG 0.590805 1_1:-29371278 None:intergenic
CTTCAACGAAATAATTGTGA+AGG 0.591418 1_1:+29368905 Msa0017620:CDS
CCGAAAAGTAACCTAGATTG+TGG 0.592635 1_1:-29369001 None:intergenic
CATATCGGAAAGCGGTGATG+AGG 0.593643 1_1:+29369627 Msa0017620:CDS
AGATGAAATACTCAGGGAGA+TGG 0.595348 1_1:+29372385 Msa0017620:CDS
ATGCCAAGAAGCGAAATTGG+AGG 0.597152 1_1:+29369229 Msa0017620:CDS
AAAATGGAATATTCCCGTGC+CGG 0.598414 1_1:+29370970 Msa0017620:CDS
AGCATCGATTACTTCCTCGC+AGG 0.600178 1_1:-29369527 None:intergenic
CACAATCTCGTGTTGTTCAG+TGG 0.601439 1_1:-29371670 None:intergenic
GATAAATTTGAAGATCGTTG+TGG 0.605781 1_1:+29372065 Msa0017620:CDS
TGGACTCTTGATACTTGATG+AGG 0.608858 1_1:+29371237 Msa0017620:CDS
ACTCAGGGAGATGGTTGAAG+AGG 0.610175 1_1:+29372394 Msa0017620:CDS
GGAATATACTGTCGTACATG+CGG 0.610943 1_1:+29370145 Msa0017620:CDS
AGATGACGCGGTAACAAACC+AGG 0.611437 1_1:-29369044 None:intergenic
GCAGGGTGCAAATGCTGATG+AGG 0.611917 1_1:+29370054 Msa0017620:intron
CAAAGACCACACTCTACACA+TGG 0.613075 1_1:+29370933 Msa0017620:CDS
TGATAGTTGAATCTTCTGGT+AGG 0.614159 1_1:-29369570 None:intergenic
CAGAAGAGGCAAACTAGAGG+AGG 0.618526 1_1:+29371440 Msa0017620:CDS
AAATTCACACAGAAAGCGCA+TGG 0.619203 1_1:+29371192 Msa0017620:CDS
CACTCGGGTCAATACACCCA+TGG 0.621032 1_1:+29371757 Msa0017620:CDS
GAGCATGATTATGACGGAGA+AGG 0.621402 1_1:+29369193 Msa0017620:CDS
AATCTCACGTGTGATGAGCA+AGG 0.622148 1_1:+29371899 Msa0017620:CDS
TCACTTGAGCATGATTATGA+CGG 0.623465 1_1:+29369187 Msa0017620:CDS
GATTGAAGATGAAATACTCA+GGG 0.623647 1_1:+29372379 Msa0017620:CDS
CATGAAGAACAGGATCATAG+AGG 0.626014 1_1:+29369481 Msa0017620:CDS
GCACAAAGAAGCTTAAGAGA+AGG 0.628810 1_1:+29369362 Msa0017620:CDS
GAAGCGATACAATCCAAAGA+AGG 0.629502 1_1:+29369424 Msa0017620:CDS
AATGAACTCAAATATTGATG+CGG 0.633014 1_1:+29371524 Msa0017620:CDS
ATGTGAACATGATTATCGAT+TGG 0.633134 1_1:+29370111 Msa0017620:CDS
GTACAGAAGAGGCAAACTAG+AGG 0.636952 1_1:+29371437 Msa0017620:CDS
GGACTCTTGATACTTGATGA+GGG 0.637751 1_1:+29371238 Msa0017620:CDS
GAATGGCTCATGGGAACCTG+TGG 0.639123 1_1:+29368383 Msa0017620:CDS
AAAGAGAAATCTGACACAAG+TGG 0.641751 1_1:+29370800 Msa0017620:CDS
TAAACTGCAAAAGAAAATGG+CGG 0.644292 1_1:+29371695 Msa0017620:CDS
GTCACAACCTTGCACCAGTG+AGG 0.646068 1_1:+29371940 Msa0017620:CDS
TGTAATGATGGAAAGTTGGA+AGG 0.647232 1_1:+29369301 Msa0017620:CDS
CAAAGAAGCTTAAGAGAAGG+CGG 0.649437 1_1:+29369365 Msa0017620:CDS
GAAGTACCACATCAAAGTTG+AGG 0.659873 1_1:+29371272 Msa0017620:CDS
GTGGATAAGATACACCGGCA+CGG 0.666067 1_1:-29370984 None:intergenic
TTGTTGAAGATCCTTCCGAA+TGG 0.668864 1_1:+29372345 Msa0017620:CDS
AACCTTCTTTAAAGATGACG+CGG 0.674091 1_1:-29369056 None:intergenic
AAAGAAAACATATCGGAAAG+CGG 0.678479 1_1:+29369619 Msa0017620:CDS
GTCTACGACGCTCAAAACGT+AGG 0.683290 1_1:+29369251 Msa0017620:CDS
AATGATGGAAAGTTGGAAGG+TGG 0.683831 1_1:+29369304 Msa0017620:CDS
CAGCTGTGGATAAGATACAC+CGG 0.684401 1_1:-29370989 None:intergenic
GAGAAATCTGACACAAGTGG+TGG 0.685073 1_1:+29370803 Msa0017620:CDS
AACCCATGACAAGAACACTA+GGG 0.686530 1_1:-29371129 None:intergenic
GGAAGCGCCTCATTTACTAG+AGG 0.697989 1_1:+29371461 Msa0017620:CDS
TATGAGTTTGTTGTGCATGG+AGG 0.703519 1_1:-29368446 None:intergenic
ATGACGGAGAAGGTGCAATG+CGG 0.752637 1_1:+29369203 Msa0017620:CDS
GTTAAATGCTGATACCTGCG+AGG 0.758695 1_1:+29369513 Msa0017620:CDS
GTTGATGACTGGATCCATGG+AGG 0.768053 1_1:+29372259 Msa0017620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATGATTAATTTATTAT+TGG - chr1_1:29368165-29368184 None:intergenic 10.0%
!! AATAAATAAATGTATACAGA+AGG - chr1_1:29368668-29368687 None:intergenic 15.0%
!! GACAATTATGATTTATATAT+AGG + chr1_1:29369918-29369937 Msa0017620:intron 15.0%
!! AATTATGATTTATATATAGG+CGG + chr1_1:29369921-29369940 Msa0017620:intron 15.0%
!!! GATTTAAATACGTTATTTTT+TGG + chr1_1:29369975-29369994 Msa0017620:intron 15.0%
!! AGTTTATGTTAATGAATTAC+CGG - chr1_1:29368139-29368158 None:intergenic 20.0%
!! TGTTTAGAAATAAGAATTAG+AGG - chr1_1:29368346-29368365 None:intergenic 20.0%
!!! AACTCATAAAAATTGATTCT+GGG + chr1_1:29368406-29368425 Msa0017620:CDS 20.0%
!!! TGAAGTTAATTCTTTTAGAA+GGG + chr1_1:29368952-29368971 Msa0017620:CDS 20.0%
!!! GTAAAACATTTTATACAGAT+AGG - chr1_1:29369819-29369838 None:intergenic 20.0%
!!! TTTTTTACTTGACTTACAAT+GGG - chr1_1:29370260-29370279 None:intergenic 20.0%
!!! TAATTACAAGTTTGAAATCA+CGG - chr1_1:29370416-29370435 None:intergenic 20.0%
!! TGTAAATTAAGTTCCTTATT+TGG + chr1_1:29370440-29370459 Msa0017620:intron 20.0%
!!! TTGTTACATATTTTCTCTAT+TGG + chr1_1:29370506-29370525 Msa0017620:intron 20.0%
!!! ACTTTGTTTCAAAACAATTT+TGG + chr1_1:29371343-29371362 Msa0017620:intron 20.0%
!!! CTTTGTTTCAAAACAATTTT+GGG + chr1_1:29371344-29371363 Msa0017620:intron 20.0%
!! ATAAATATAGAAGAACTACT+TGG + chr1_1:29372285-29372304 Msa0017620:CDS 20.0%
! ATACGATAATAACGCTATAA+TGG + chr1_1:29368034-29368053 Msa0017620:CDS 25.0%
! AATGTAATTGACAATCTTGT+AGG + chr1_1:29368247-29368266 Msa0017620:intron 25.0%
!! GAACTCATAAAAATTGATTC+TGG + chr1_1:29368405-29368424 Msa0017620:CDS 25.0%
!! GTAAACTTTTATGATGATCA+AGG + chr1_1:29368803-29368822 Msa0017620:CDS 25.0%
! AATTATTTCGTTGAAGTCTT+TGG - chr1_1:29368901-29368920 None:intergenic 25.0%
!! CTGAAGTTAATTCTTTTAGA+AGG + chr1_1:29368951-29368970 Msa0017620:CDS 25.0%
! TTCATAGGACTACTAATATT+AGG - chr1_1:29369139-29369158 None:intergenic 25.0%
! TTGAAGTTCAAAACATTCAT+AGG - chr1_1:29369154-29369173 None:intergenic 25.0%
! TTGAACTTCAAATCAGAAAA+CGG + chr1_1:29369163-29369182 Msa0017620:CDS 25.0%
!! ATATGGATTTGATAGCTTTA+TGG + chr1_1:29369401-29369420 Msa0017620:CDS 25.0%
!!! TATGGATTTGATAGCTTTAT+GGG + chr1_1:29369402-29369421 Msa0017620:CDS 25.0%
!! TATTTGACTTCAACCATAAA+TGG - chr1_1:29369885-29369904 None:intergenic 25.0%
!!! TGGTTTTATCGTCTATTTTA+AGG + chr1_1:29369995-29370014 Msa0017620:intron 25.0%
! AACTATTAAATACCATAGCA+GGG + chr1_1:29370037-29370056 Msa0017620:intron 25.0%
!!! GTTTTTTACTTGACTTACAA+TGG - chr1_1:29370261-29370280 None:intergenic 25.0%
!! AATTAAGTTCCTTATTTGGT+TGG + chr1_1:29370444-29370463 Msa0017620:intron 25.0%
! AAAACATATCCAACCAAATA+AGG - chr1_1:29370456-29370475 None:intergenic 25.0%
! GTTGTCTAATTTATATCCAA+TGG + chr1_1:29370528-29370547 Msa0017620:intron 25.0%
! TCTAATTTATATCCAATGGT+AGG + chr1_1:29370532-29370551 Msa0017620:intron 25.0%
!! CTATCATTTTCTTTGGATAT+TGG - chr1_1:29370671-29370690 None:intergenic 25.0%
!! CAAAGAAAATGATAGTGTTT+GGG + chr1_1:29370676-29370695 Msa0017620:CDS 25.0%
!!! AAAAAGCTTTTGAGTTTCTT+TGG + chr1_1:29370741-29370760 Msa0017620:CDS 25.0%
!! AGAACTTCGTGAATAAATTT+TGG - chr1_1:29371399-29371418 None:intergenic 25.0%
! AAAATTTATTCACGAAGTTC+TGG + chr1_1:29371398-29371417 Msa0017620:CDS 25.0%
! AATGAACTCAAATATTGATG+CGG + chr1_1:29371524-29371543 Msa0017620:CDS 25.0%
! AATGTATATATTTGCAAACC+AGG - chr1_1:29371636-29371655 None:intergenic 25.0%
!! TATTTGAGAATCATTTTCAG+TGG + chr1_1:29371976-29371995 Msa0017620:CDS 25.0%
!! AATCATTTTCAGTGGAAAAA+TGG + chr1_1:29371984-29372003 Msa0017620:CDS 25.0%
!! AACGCTATAATGGATATTCA+TGG + chr1_1:29368044-29368063 Msa0017620:CDS 30.0%
! GTATGATACATTTAAGATGC+CGG + chr1_1:29368117-29368136 Msa0017620:intron 30.0%
! TCAATTTTTATGAGTTCCAC+AGG - chr1_1:29368402-29368421 None:intergenic 30.0%
! TAGCTTTTCTTGATCTTATC+CGG - chr1_1:29368491-29368510 None:intergenic 30.0%
AAGATCAAGAAAAGCTACTT+CGG + chr1_1:29368494-29368513 Msa0017620:CDS 30.0%
GTAAGAAGATTGAACTTACT+GGG - chr1_1:29368605-29368624 None:intergenic 30.0%
AGTAAGAAGATTGAACTTAC+TGG - chr1_1:29368606-29368625 None:intergenic 30.0%
! ATTTGTGAGGTTTTTGTGTA+TGG - chr1_1:29368757-29368776 None:intergenic 30.0%
! GAACATTGGTTATATTTGTG+AGG - chr1_1:29368770-29368789 None:intergenic 30.0%
CACTGAAATAAAAACTCTGA+AGG + chr1_1:29368835-29368854 Msa0017620:CDS 30.0%
! AATAAAAACTCTGAAGGAAG+AGG + chr1_1:29368841-29368860 Msa0017620:CDS 30.0%
CTTCAACGAAATAATTGTGA+AGG + chr1_1:29368905-29368924 Msa0017620:CDS 30.0%
CATTACGTAGATTGTAATGA+TGG + chr1_1:29369289-29369308 Msa0017620:CDS 30.0%
! AGATTGTAATGATGGAAAGT+TGG + chr1_1:29369297-29369316 Msa0017620:CDS 30.0%
! TTTCTTTTGAACACCTTCTT+TGG - chr1_1:29369440-29369459 None:intergenic 30.0%
AAAGAAAACATATCGGAAAG+CGG + chr1_1:29369619-29369638 Msa0017620:CDS 30.0%
ACATCAAGTTATCTTCTTGA+TGG + chr1_1:29369703-29369722 Msa0017620:CDS 30.0%
TTATCTTCTTGATGGAAATG+AGG + chr1_1:29369711-29369730 Msa0017620:CDS 30.0%
ACAAGTAAAAGACAAGAGAT+GGG - chr1_1:29369758-29369777 None:intergenic 30.0%
ATTGACTGTTGAACCATTTA+TGG + chr1_1:29369869-29369888 Msa0017620:intron 30.0%
!!! ATCGTCTATTTTAAGGCTAA+AGG + chr1_1:29370002-29370021 Msa0017620:intron 30.0%
CAACTATTAAATACCATAGC+AGG + chr1_1:29370036-29370055 Msa0017620:intron 30.0%
TGACACAAATAAAGAATCCA+AGG + chr1_1:29370084-29370103 Msa0017620:CDS 30.0%
ATGTGAACATGATTATCGAT+TGG + chr1_1:29370111-29370130 Msa0017620:CDS 30.0%
! TATCGATTGGATGAACAAAT+TGG + chr1_1:29370124-29370143 Msa0017620:CDS 30.0%
!!! GTTTTAATTAGCAACGAGTT+TGG + chr1_1:29370300-29370319 Msa0017620:intron 30.0%
TAACTTTCAGAAAATCACAG+TGG - chr1_1:29370341-29370360 None:intergenic 30.0%
! CCAAACACTATCATTTTCTT+TGG - chr1_1:29370678-29370697 None:intergenic 30.0%
! CCAAAGAAAATGATAGTGTT+TGG + chr1_1:29370675-29370694 Msa0017620:CDS 30.0%
!!! GAAACTCAAAAGCTTTTTTC+TGG - chr1_1:29370739-29370758 None:intergenic 30.0%
! TTTCTTTGGAAAAACATTGC+AGG + chr1_1:29370755-29370774 Msa0017620:CDS 30.0%
! TTCTTTGGAAAAACATTGCA+GGG + chr1_1:29370756-29370775 Msa0017620:CDS 30.0%
AAGAAAAGAGATGATGAGAA+AGG - chr1_1:29370864-29370883 None:intergenic 30.0%
CTTATCTTCTGTTCTCATTA+AGG - chr1_1:29371170-29371189 None:intergenic 30.0%
! GCATTGAGAATTTTACTTTC+TGG + chr1_1:29371319-29371338 Msa0017620:intron 30.0%
!! TTCGTGAATAAATTTTGGTC+TGG - chr1_1:29371394-29371413 None:intergenic 30.0%
TTAGATTCTAAGTACAGAAG+AGG + chr1_1:29371426-29371445 Msa0017620:CDS 30.0%
TATTGATGCGGAAAAAATGA+AGG + chr1_1:29371536-29371555 Msa0017620:CDS 30.0%
ATTGATGCGGAAAAAATGAA+GGG + chr1_1:29371537-29371556 Msa0017620:CDS 30.0%
GCATAAACTGCAAAAGAAAA+TGG + chr1_1:29371692-29371711 Msa0017620:CDS 30.0%
TAAACTGCAAAAGAAAATGG+CGG + chr1_1:29371695-29371714 Msa0017620:CDS 30.0%
TAGGACAAAGCAAATTTGAT+TGG + chr1_1:29371841-29371860 Msa0017620:CDS 30.0%
AGCAAATTTGATTGGAGAAA+AGG + chr1_1:29371849-29371868 Msa0017620:CDS 30.0%
GCTCAAAACAAATCTTACTT+TGG - chr1_1:29371877-29371896 None:intergenic 30.0%
AACTCTATTAAAAACCTCAC+TGG - chr1_1:29371957-29371976 None:intergenic 30.0%
GATAAATTTGAAGATCGTTG+TGG + chr1_1:29372065-29372084 Msa0017620:CDS 30.0%
!!! ATAGCTTGCTTTGTTTTTGA+AGG - chr1_1:29372188-29372207 None:intergenic 30.0%
TCTATATTTATCTTCCTCCA+TGG - chr1_1:29372276-29372295 None:intergenic 30.0%
! TTCTTGTATGATTTTCAGTG+AGG + chr1_1:29372319-29372338 Msa0017620:CDS 30.0%
AGATTGAAGATGAAATACTC+AGG + chr1_1:29372378-29372397 Msa0017620:CDS 30.0%
GATTGAAGATGAAATACTCA+GGG + chr1_1:29372379-29372398 Msa0017620:CDS 30.0%
TAACTAGATGTGCTATGCAT+TGG + chr1_1:29368197-29368216 Msa0017620:intron 35.0%
! GCATTTGAAGCAGTATTGAA+TGG + chr1_1:29368366-29368385 Msa0017620:intron 35.0%
!! TACTATGAGTTTGTTGTGCA+TGG - chr1_1:29368452-29368471 None:intergenic 35.0%
! GTAATTTGTCATCAGACATC+CGG + chr1_1:29368469-29368488 Msa0017620:CDS 35.0%
ATATGTCAATTCCAGGTCTT+AGG - chr1_1:29368536-29368555 None:intergenic 35.0%
CATGAAATCGACATGAACAT+TGG - chr1_1:29368784-29368803 None:intergenic 35.0%
TATGATGATCAAGGTTCACT+TGG + chr1_1:29368812-29368831 Msa0017620:CDS 35.0%
AAGGAAGAGGATAATGTGAT+TGG + chr1_1:29368854-29368873 Msa0017620:CDS 35.0%
TATTTCGTTGAAGTCTTTGG+AGG - chr1_1:29368898-29368917 None:intergenic 35.0%
!!! CCACAATCTAGGTTACTTTT+CGG + chr1_1:29369001-29369020 Msa0017620:CDS 35.0%
!!! CACAATCTAGGTTACTTTTC+GGG + chr1_1:29369002-29369021 Msa0017620:CDS 35.0%
! AGTTTTTGTCTGATCTTTCC+TGG + chr1_1:29369026-29369045 Msa0017620:CDS 35.0%
! AACCTTCTTTAAAGATGACG+CGG - chr1_1:29369059-29369078 None:intergenic 35.0%
TCACTTGAGCATGATTATGA+CGG + chr1_1:29369187-29369206 Msa0017620:CDS 35.0%
TACGTAATGTTCAAGCTGTA+TGG - chr1_1:29369278-29369297 None:intergenic 35.0%
! TGTAATGATGGAAAGTTGGA+AGG + chr1_1:29369301-29369320 Msa0017620:CDS 35.0%
TATCGATGATCATGAAGAAC+AGG + chr1_1:29369471-29369490 Msa0017620:CDS 35.0%
TGATAGTTGAATCTTCTGGT+AGG - chr1_1:29369573-29369592 None:intergenic 35.0%
TCACTGATAGTTGAATCTTC+TGG - chr1_1:29369577-29369596 None:intergenic 35.0%
GCAGGAGAAAGAAAACATAT+CGG + chr1_1:29369612-29369631 Msa0017620:CDS 35.0%
GGTAGAAAATCCTGATGATT+TGG + chr1_1:29369648-29369667 Msa0017620:CDS 35.0%
CTTGATGGAAATGAGGTATA+TGG + chr1_1:29369718-29369737 Msa0017620:intron 35.0%
GACAAGTAAAAGACAAGAGA+TGG - chr1_1:29369759-29369778 None:intergenic 35.0%
ATCATGTTCACATGTTTCCT+TGG - chr1_1:29370104-29370123 None:intergenic 35.0%
! CTTGGTTGTTGTTGTACAAT+GGG - chr1_1:29370205-29370224 None:intergenic 35.0%
! TTACAAGTTTGAAATCACGG+TGG - chr1_1:29370413-29370432 None:intergenic 35.0%
GAAACAATGCAGTGAAGATA+CGG + chr1_1:29370583-29370602 Msa0017620:CDS 35.0%
!! TGCATGTTTTCTTTGAGTTC+AGG - chr1_1:29370710-29370729 None:intergenic 35.0%
AAAGAGAAATCTGACACAAG+TGG + chr1_1:29370800-29370819 Msa0017620:CDS 35.0%
TGTGTTATATCTCATACTCC+TGG + chr1_1:29370827-29370846 Msa0017620:CDS 35.0%
GGCAAAAAGAGTTCGAAAAA+TGG + chr1_1:29370954-29370973 Msa0017620:CDS 35.0%
TTCAACGACACCAAAATCAA+TGG + chr1_1:29371027-29371046 Msa0017620:CDS 35.0%
TGCTTGACACCATTAGAATT+TGG - chr1_1:29371067-29371086 None:intergenic 35.0%
! TAATGGTGTCAAGCATGATT+TGG + chr1_1:29371072-29371091 Msa0017620:CDS 35.0%
GTCTAGAAAAGATCAAAAGC+TGG + chr1_1:29371098-29371117 Msa0017620:CDS 35.0%
AACTTTGATGTGGTACTTCT+AGG - chr1_1:29371271-29371290 None:intergenic 35.0%
!! AAAGTTGAGGAAGTGCTTAA+TGG + chr1_1:29371285-29371304 Msa0017620:intron 35.0%
AGTAAAATTCTCAATGCTGC+TGG - chr1_1:29371316-29371335 None:intergenic 35.0%
GTGCTTCGAAAAATCACAAA+TGG + chr1_1:29371567-29371586 Msa0017620:CDS 35.0%
AAACTGCAAAAGAAAATGGC+GGG + chr1_1:29371696-29371715 Msa0017620:CDS 35.0%
!! GTTGAGCTTTTGATAACACT+CGG + chr1_1:29371741-29371760 Msa0017620:CDS 35.0%
!! TTGAGCTTTTGATAACACTC+GGG + chr1_1:29371742-29371761 Msa0017620:CDS 35.0%
!!! CTGCTGTTTTGATTAACCAT+GGG - chr1_1:29371776-29371795 None:intergenic 35.0%
!!! TCTGCTGTTTTGATTAACCA+TGG - chr1_1:29371777-29371796 None:intergenic 35.0%
AAAGAGATTCTGCAACTAAC+TGG + chr1_1:29372008-29372027 Msa0017620:CDS 35.0%
TCAATCAATGCTTGTTCTGA+AGG + chr1_1:29372110-29372129 Msa0017620:CDS 35.0%
! AGCTTCAAGAGTGATTTTCT+TGG + chr1_1:29372148-29372167 Msa0017620:CDS 35.0%
! TGATTTTCTTGGATTCTGAG+TGG + chr1_1:29372159-29372178 Msa0017620:CDS 35.0%
! TAAACCATTTTCTCTTGACC+AGG - chr1_1:29372227-29372246 None:intergenic 35.0%
!! GTATATCACTTGTTGATGAC+TGG + chr1_1:29372248-29372267 Msa0017620:CDS 35.0%
AAGAACTACTTGGAAAGAGT+GGG + chr1_1:29372295-29372314 Msa0017620:CDS 35.0%
GATACATGTGTCTAACTCGT+TGG + chr1_1:29368079-29368098 Msa0017620:intron 40.0%
! AAGCAGTATTGAATGGCTCA+TGG + chr1_1:29368373-29368392 Msa0017620:CDS 40.0%
! AGCAGTATTGAATGGCTCAT+GGG + chr1_1:29368374-29368393 Msa0017620:CDS 40.0%
TTGTGCATGGAGGAAATGTA+TGG - chr1_1:29368439-29368458 None:intergenic 40.0%
!! TATGAGTTTGTTGTGCATGG+AGG - chr1_1:29368449-29368468 None:intergenic 40.0%
AATTCCAGGTCTTAGGAAAC+TGG - chr1_1:29368529-29368548 None:intergenic 40.0%
AGCACAGATATGTCAATTCC+AGG - chr1_1:29368543-29368562 None:intergenic 40.0%
CCGAAAAGTAACCTAGATTG+TGG - chr1_1:29369004-29369023 None:intergenic 40.0%
! TACCGCGTCATCTTTAAAGA+AGG + chr1_1:29369054-29369073 Msa0017620:CDS 40.0%
GGTTGCATTCGTCATAAGAT+CGG + chr1_1:29369075-29369094 Msa0017620:CDS 40.0%
AAGCTTGTGCATCAAGTCAT+GGG + chr1_1:29369106-29369125 Msa0017620:CDS 40.0%
! AATGATGGAAAGTTGGAAGG+TGG + chr1_1:29369304-29369323 Msa0017620:CDS 40.0%
! GGTGGTGATAATGTTTCTTC+AGG + chr1_1:29369322-29369341 Msa0017620:CDS 40.0%
GCACAAAGAAGCTTAAGAGA+AGG + chr1_1:29369362-29369381 Msa0017620:CDS 40.0%
CAAAGAAGCTTAAGAGAAGG+CGG + chr1_1:29369365-29369384 Msa0017620:CDS 40.0%
TAAGAGAAGGCGGTTGTTTA+AGG + chr1_1:29369375-29369394 Msa0017620:CDS 40.0%
GAAGCGATACAATCCAAAGA+AGG + chr1_1:29369424-29369443 Msa0017620:CDS 40.0%
CATGAAGAACAGGATCATAG+AGG + chr1_1:29369481-29369500 Msa0017620:CDS 40.0%
GGAAGTAATCGATGCTTACA+TGG + chr1_1:29369534-29369553 Msa0017620:CDS 40.0%
TGAAGAAAGACAGTTTGAGC+AGG + chr1_1:29369594-29369613 Msa0017620:CDS 40.0%
! GAAAATCCTGATGATTTGGC+TGG + chr1_1:29369652-29369671 Msa0017620:CDS 40.0%
! TGATGATTTGGCTGGCATAT+GGG + chr1_1:29369660-29369679 Msa0017620:CDS 40.0%
GGAATATACTGTCGTACATG+CGG + chr1_1:29370145-29370164 Msa0017620:CDS 40.0%
! GCTTGGTTGTTGTTGTACAA+TGG - chr1_1:29370206-29370225 None:intergenic 40.0%
ATATCCAATGGTAGGTGACA+AGG + chr1_1:29370540-29370559 Msa0017620:intron 40.0%
TCAACTGATGCTACTGATCT+TGG + chr1_1:29370641-29370660 Msa0017620:CDS 40.0%
GAAAAACATTGCAGGGTCTA+TGG + chr1_1:29370763-29370782 Msa0017620:CDS 40.0%
! AGGACTAATGGTCTTTTCTG+TGG - chr1_1:29370908-29370927 None:intergenic 40.0%
! TTTTTGCCATGTGTAGAGTG+TGG - chr1_1:29370942-29370961 None:intergenic 40.0%
AAAATGGAATATTCCCGTGC+CGG + chr1_1:29370970-29370989 Msa0017620:CDS 40.0%
!! TTGGTGTCGTTGAATGTATC+TGG - chr1_1:29371021-29371040 None:intergenic 40.0%
! CCATTAGAATTTGGAACTCC+AGG - chr1_1:29371058-29371077 None:intergenic 40.0%
CCTGGAGTTCCAAATTCTAA+TGG + chr1_1:29371055-29371074 Msa0017620:CDS 40.0%
AACCCATGACAAGAACACTA+GGG - chr1_1:29371132-29371151 None:intergenic 40.0%
TAACCCATGACAAGAACACT+AGG - chr1_1:29371133-29371152 None:intergenic 40.0%
! AAATTCACACAGAAAGCGCA+TGG + chr1_1:29371192-29371211 Msa0017620:CDS 40.0%
TCATCAAGTATCAAGAGTCC+AGG - chr1_1:29371238-29371257 None:intergenic 40.0%
TGGACTCTTGATACTTGATG+AGG + chr1_1:29371237-29371256 Msa0017620:CDS 40.0%
GGACTCTTGATACTTGATGA+GGG + chr1_1:29371238-29371257 Msa0017620:CDS 40.0%
! GAAGTACCACATCAAAGTTG+AGG + chr1_1:29371272-29371291 Msa0017620:CDS 40.0%
AGTTCTTCTGATACTCTTCC+TGG + chr1_1:29371615-29371634 Msa0017620:CDS 40.0%
TTAAAAACCTCACTGGTGCA+AGG - chr1_1:29371950-29371969 None:intergenic 40.0%
TCAACCTGGTCAAGAGAAAA+TGG + chr1_1:29372220-29372239 Msa0017620:CDS 40.0%
GAAGAACTACTTGGAAAGAG+TGG + chr1_1:29372294-29372313 Msa0017620:CDS 40.0%
TTGTTGAAGATCCTTCCGAA+TGG + chr1_1:29372345-29372364 Msa0017620:CDS 40.0%
AATCTTCTCAGCTTGCCATT+CGG - chr1_1:29372363-29372382 None:intergenic 40.0%
AGATGAAATACTCAGGGAGA+TGG + chr1_1:29372385-29372404 Msa0017620:CDS 40.0%
GCTCTTCATTGCCACAATCT+AGG + chr1_1:29368990-29369009 Msa0017620:CDS 45.0%
CAAGCTTGTGCATCAAGTCA+TGG + chr1_1:29369105-29369124 Msa0017620:CDS 45.0%
! GAGCATGATTATGACGGAGA+AGG + chr1_1:29369193-29369212 Msa0017620:CDS 45.0%
CCAATTTCGCTTCTTGGCAT+TGG - chr1_1:29369229-29369248 None:intergenic 45.0%
CCAATGCCAAGAAGCGAAAT+TGG + chr1_1:29369226-29369245 Msa0017620:CDS 45.0%
ATGCCAAGAAGCGAAATTGG+AGG + chr1_1:29369229-29369248 Msa0017620:CDS 45.0%
AGACCTCCAATTTCGCTTCT+TGG - chr1_1:29369235-29369254 None:intergenic 45.0%
! GCGGTTGTTTAAGGAGCATA+TGG + chr1_1:29369384-29369403 Msa0017620:CDS 45.0%
GTTAAATGCTGATACCTGCG+AGG + chr1_1:29369513-29369532 Msa0017620:CDS 45.0%
CATATGCCAGCCAAATCATC+AGG - chr1_1:29369661-29369680 None:intergenic 45.0%
! CTGATGATTTGGCTGGCATA+TGG + chr1_1:29369659-29369678 Msa0017620:CDS 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_1:29370221-29370240 Msa0017620:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_1:29370222-29370241 Msa0017620:intron 45.0%
! GTTTGAAATCACGGTGGATC+TGG - chr1_1:29370407-29370426 None:intergenic 45.0%
!! TTAGCCTTGTCACCTACCAT+TGG - chr1_1:29370547-29370566 None:intergenic 45.0%
GGTAGGTGACAAGGCTAAAA+TGG + chr1_1:29370549-29370568 Msa0017620:intron 45.0%
GAGAAATCTGACACAAGTGG+TGG + chr1_1:29370803-29370822 Msa0017620:CDS 45.0%
ATATCTCATACTCCTGGAGC+TGG + chr1_1:29370833-29370852 Msa0017620:CDS 45.0%
! AGAAAGGTTTTTCCAGCTCC+AGG - chr1_1:29370848-29370867 None:intergenic 45.0%
!! GTCTTTGGAGCTAGGACTAA+TGG - chr1_1:29370920-29370939 None:intergenic 45.0%
CATGTGTAGAGTGTGGTCTT+TGG - chr1_1:29370935-29370954 None:intergenic 45.0%
CAAAGACCACACTCTACACA+TGG + chr1_1:29370933-29370952 Msa0017620:CDS 45.0%
CAGCTGTGGATAAGATACAC+CGG - chr1_1:29370992-29371011 None:intergenic 45.0%
!!! CCAGGCAGAACCATTGATTT+TGG - chr1_1:29371040-29371059 None:intergenic 45.0%
! CCAAAATCAATGGTTCTGCC+TGG + chr1_1:29371037-29371056 Msa0017620:CDS 45.0%
ACACCCTAGTGTTCTTGTCA+TGG + chr1_1:29371126-29371145 Msa0017620:CDS 45.0%
CACCCTAGTGTTCTTGTCAT+GGG + chr1_1:29371127-29371146 Msa0017620:CDS 45.0%
!! AAAGCATTGAGGGAAAGTCC+TGG + chr1_1:29371217-29371236 Msa0017620:CDS 45.0%
GCACTTCCTCAACTTTGATG+TGG - chr1_1:29371281-29371300 None:intergenic 45.0%
GTACAGAAGAGGCAAACTAG+AGG + chr1_1:29371437-29371456 Msa0017620:CDS 45.0%
ACGCGCGAGAAAATTCTTCT+TGG + chr1_1:29371485-29371504 Msa0017620:CDS 45.0%
! CACAATCTCGTGTTGTTCAG+TGG - chr1_1:29371673-29371692 None:intergenic 45.0%
CTCAACCTCAAGAGAGTAAC+CGG - chr1_1:29371727-29371746 None:intergenic 45.0%
GAAGAAGAGCTGAAGAGACT+AGG + chr1_1:29371822-29371841 Msa0017620:CDS 45.0%
TGCTCATCACACGTGAGATT+AGG - chr1_1:29371899-29371918 None:intergenic 45.0%
AATCTCACGTGTGATGAGCA+AGG + chr1_1:29371899-29371918 Msa0017620:CDS 45.0%
ACGTGTGATGAGCAAGGAAA+AGG + chr1_1:29371905-29371924 Msa0017620:CDS 45.0%
!! CTTGTTGATGACTGGATCCA+TGG + chr1_1:29372256-29372275 Msa0017620:CDS 45.0%
TGCTCCAGTTTCCTAAGACC+TGG + chr1_1:29368522-29368541 Msa0017620:CDS 50.0%
AGATGACGCGGTAACAAACC+AGG - chr1_1:29369047-29369066 None:intergenic 50.0%
! ATGACGGAGAAGGTGCAATG+CGG + chr1_1:29369203-29369222 Msa0017620:CDS 50.0%
GTCTACGACGCTCAAAACGT+AGG + chr1_1:29369251-29369270 Msa0017620:CDS 50.0%
!! AGCATCGATTACTTCCTCGC+AGG - chr1_1:29369530-29369549 None:intergenic 50.0%
CATATCGGAAAGCGGTGATG+AGG + chr1_1:29369627-29369646 Msa0017620:CDS 50.0%
TCAGCATTTGCACCCTGCTA+TGG - chr1_1:29370052-29370071 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_1:29370223-29370242 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_1:29370220-29370239 Msa0017620:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_1:29370226-29370245 Msa0017620:intron 50.0%
!! AGAGTGTGGTCTTTGGAGCT+AGG - chr1_1:29370928-29370947 None:intergenic 50.0%
TGGATAAGATACACCGGCAC+GGG - chr1_1:29370986-29371005 None:intergenic 50.0%
GTGGATAAGATACACCGGCA+CGG - chr1_1:29370987-29371006 None:intergenic 50.0%
!! AGCGCATGGCTAAAGCATTG+AGG + chr1_1:29371206-29371225 Msa0017620:CDS 50.0%
!! GCGCATGGCTAAAGCATTGA+GGG + chr1_1:29371207-29371226 Msa0017620:CDS 50.0%
CAGAAGAGGCAAACTAGAGG+AGG + chr1_1:29371440-29371459 Msa0017620:CDS 50.0%
!! GGAAGCGCCTCATTTACTAG+AGG + chr1_1:29371461-29371480 Msa0017620:CDS 50.0%
!! AAGAAAATGGCGGGCTGTAC+CGG + chr1_1:29371705-29371724 Msa0017620:CDS 50.0%
!! CTGTACCGGTTACTCTCTTG+AGG + chr1_1:29371719-29371738 Msa0017620:CDS 50.0%
! ATTGCACGCGCTTTTCAACC+TGG + chr1_1:29372206-29372225 Msa0017620:CDS 50.0%
!! GTTGATGACTGGATCCATGG+AGG + chr1_1:29372259-29372278 Msa0017620:CDS 50.0%
TTCTCAGCTTGCCATTCGGA+AGG - chr1_1:29372359-29372378 None:intergenic 50.0%
ACTCAGGGAGATGGTTGAAG+AGG + chr1_1:29372394-29372413 Msa0017620:CDS 50.0%
GAATGGCTCATGGGAACCTG+TGG + chr1_1:29368383-29368402 Msa0017620:CDS 55.0%
GCAGGGTGCAAATGCTGATG+AGG + chr1_1:29370054-29370073 Msa0017620:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_1:29370228-29370247 None:intergenic 55.0%
AGAAGCCGACCCCACTTAGT+GGG - chr1_1:29370234-29370253 None:intergenic 55.0%
! GTATCTGGCTTCGACAGCTG+TGG - chr1_1:29371006-29371025 None:intergenic 55.0%
GCGCGTGCCTCTAGTAAATG+AGG - chr1_1:29371471-29371490 None:intergenic 55.0%
CACTCGGGTCAATACACCCA+TGG + chr1_1:29371757-29371776 Msa0017620:CDS 55.0%
GTCACAACCTTGCACCAGTG+AGG + chr1_1:29371940-29371959 Msa0017620:CDS 55.0%
CAGAAGCCGACCCCACTTAG+TGG - chr1_1:29370235-29370254 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 29367993 29372472 29367993 ID=Msa0017620;Name=Msa0017620
chr1_1 mRNA 29367993 29372472 29367993 ID=Msa0017620-mRNA-1;Parent=Msa0017620;Name=Msa0017620-mRNA-1;_AED=0.07;_eAED=0.12;_QI=0|0|0|0.83|1|1|6|0|1092
chr1_1 exon 29367993 29368074 29367993 ID=Msa0017620-mRNA-1:exon:9753;Parent=Msa0017620-mRNA-1
chr1_1 exon 29368367 29368605 29368367 ID=Msa0017620-mRNA-1:exon:9754;Parent=Msa0017620-mRNA-1
chr1_1 exon 29368746 29369732 29368746 ID=Msa0017620-mRNA-1:exon:9755;Parent=Msa0017620-mRNA-1
chr1_1 exon 29370058 29370207 29370058 ID=Msa0017620-mRNA-1:exon:9756;Parent=Msa0017620-mRNA-1
chr1_1 exon 29370554 29371296 29370554 ID=Msa0017620-mRNA-1:exon:9757;Parent=Msa0017620-mRNA-1
chr1_1 exon 29371395 29372472 29371395 ID=Msa0017620-mRNA-1:exon:9758;Parent=Msa0017620-mRNA-1
chr1_1 CDS 29367993 29368074 29367993 ID=Msa0017620-mRNA-1:cds;Parent=Msa0017620-mRNA-1
chr1_1 CDS 29368367 29368605 29368367 ID=Msa0017620-mRNA-1:cds;Parent=Msa0017620-mRNA-1
chr1_1 CDS 29368746 29369732 29368746 ID=Msa0017620-mRNA-1:cds;Parent=Msa0017620-mRNA-1
chr1_1 CDS 29370058 29370207 29370058 ID=Msa0017620-mRNA-1:cds;Parent=Msa0017620-mRNA-1
chr1_1 CDS 29370554 29371296 29370554 ID=Msa0017620-mRNA-1:cds;Parent=Msa0017620-mRNA-1
chr1_1 CDS 29371395 29372472 29371395 ID=Msa0017620-mRNA-1:cds;Parent=Msa0017620-mRNA-1
Gene Sequence

>Msa0017620

ATGGATTACAACATTGACTTTGTGATATTGAAAAGATTGTCATACGATAATAACGCTATAATGGATATTCATGGTGCACATACATTTGAAGCAGTATTGAATGGCTCATGGGAACCTGTGGAACTCATAAAAATTGATTCTGGGAAAACTACCATACATTTCCTCCATGCACAACAAACTCATAGTAATTTGTCATCAGACATCCGGATAAGATCAAGAAAAGCTACTTCGGCTGATTGCTCCAGTTTCCTAAGACCTGGAATTGACATATCTGTGCTATCAAGCTTTCGATACGATAAAAACTCACGTCAATCTAGCCCAAGTGAATTCCATACACAAAAACCTCACAAATATAACCAATGTTCATGTCGATTTCATGTAAACTTTTATGATGATCAAGGTTCACTTGGCACTGAAATAAAAACTCTGAAGGAAGAGGATAATGTGATTGGAATTGAGAAAATTTTCATCCTCCAAAGACTTCAACGAAATAATTGTGAAGGATCGTTAAGAGAAAATGATTGTTCTGAAGTTAATTCTTTTAGAAGGGATTCATCAGAAGACTGCTCTTCATTGCCACAATCTAGGTTACTTTTCGGGAAGTTTTTGTCTGATCTTTCCTGGTTTGTTACCGCGTCATCTTTAAAGAAGGTTGCATTCGTCATAAGATCGGTTCAAAACAAGCTTGTGCATCAAGTCATGGGAAATGATCCTAATATTAGTAGTCCTATGAATGTTTTGAACTTCAAATCAGAAAACGGATCACTTGAGCATGATTATGACGGAGAAGGTGCAATGCGGCCAATGCCAAGAAGCGAAATTGGAGGTCTACGACGCTCAAAACGTAGGACCATACAGCTTGAACATTACGTAGATTGTAATGATGGAAAGTTGGAAGGTGGTGATAATGTTTCTTCAGGACATGTTAATAATTTCTGCACAAAGAAGCTTAAGAGAAGGCGGTTGTTTAAGGAGCATATGGATTTGATAGCTTTATGGGAAGCGATACAATCCAAAGAAGGTGTTCAAAAGAAAACGACAAACAGTATCGATGATCATGAAGAACAGGATCATAGAGGCAGTAGAACGTTAAATGCTGATACCTGCGAGGAAGTAATCGATGCTTACATGGATAATTTTGATAGCCTACCAGAAGATTCAACTATCAGTGAAGAAAGACAGTTTGAGCAGGAGAAAGAAAACATATCGGAAAGCGGTGATGAGGTAGAAAATCCTGATGATTTGGCTGGCATATGGGAAGAAATGAATACAGCTTTGACATCAAGTTATCTTCTTGATGGAAATGAGGGTGCAAATGCTGATGAGGTTTTAGCTGACACAAATAAAGAATCCAAGGAAACATGTGAACATGATTATCGATTGGATGAACAAATTGGAATATACTGTCGTACATGCGGCTTTGTGAAAACTGAGATACGATACATTTCTGAACCCATTGTGACAAGGCTAAAATGGTACGAACAGAAGAAACAATGCAGTGAAGATACGGAACAAGTTGATGAAGATGATAATAATGATACGTTCTCAACTGATGCTACTGATCTTGGTGAACCAATATCCAAAGAAAATGATAGTGTTTGGGAATTGATTCCTGAACTCAAAGAAAACATGCATGCACACCAGAAAAAAGCTTTTGAGTTTCTTTGGAAAAACATTGCAGGGTCTATGGATCAATCACTCATGAAAGAGAAATCTGACACAAGTGGTGGCTGTGTTATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTCATCATCTCTTTTCTTGTAAGCTATTTGAAATTATTTCCACAGAAAAGACCATTAGTCCTAGCTCCAAAGACCACACTCTACACATGGCAAAAAGAGTTCGAAAAATGGAATATTCCCGTGCCGGTGTATCTTATCCACAGCTGTCGAAGCCAGATACATTCAACGACACCAAAATCAATGGTTCTGCCTGGAGTTCCAAATTCTAATGGTGTCAAGCATGATTTGGATTGTCTAGAAAAGATCAAAAGCTGGAATTCACACCCTAGTGTTCTTGTCATGGGTTATTCTTCATTTTTAGCCTTAATGAGAACAGAAGATAAGAAAAATTCACACAGAAAGCGCATGGCTAAAGCATTGAGGGAAAGTCCTGGACTCTTGATACTTGATGAGGGACACAATCCTAGAAGTACCACATCAAAGTTGAGGAAACCAAAATTTATTCACGAAGTTCTGGAAGAGTTAGATTCTAAGTACAGAAGAGGCAAACTAGAGGAGGAAGCGCCTCATTTACTAGAGGCACGCGCGAGAAAATTCTTCTTGGAGAACATTGAAAAGAAAATGAACTCAAATATTGATGCGGAAAAAATGAAGGGTGTAGATGTGCTTCGAAAAATCACAAATGGTTTTATAGATGTTTATGACAGTGCAAGTTCTTCTGATACTCTTCCTGGTTTGCAAATATATACATTGCTCGTGAATGCATCCACTGAACAACACGAGATTGTGCATAAACTGCAAAAGAAAATGGCGGGCTGTACCGGTTACTCTCTTGAGGTTGAGCTTTTGATAACACTCGGGTCAATACACCCATGGTTAATCAAAACAGCAGAAACATGTGCAGCTAAGTTTTTCTCTGAAGAAGAGCTGAAGAGACTAGGACAAAGCAAATTTGATTGGAGAAAAGGTTCCAAAGTAAGATTTGTTTTGAGCCTAATCTCACGTGTGATGAGCAAGGAAAAGGTTCTTATCTTCTGTCACAACCTTGCACCAGTGAGGTTTTTAATAGAGTTATTTGAGAATCATTTTCAGTGGAAAAATGGTAAAGAGATTCTGCAACTAACTGGTGAACAAGACTTCTTTGAAAGAACGAGTGTGATAGATAAATTTGAAGATCGTTGTGGCGATTCAAAGATACTTCTTGCTTCAATCAATGCTTGTTCTGAAGGTATCAGTTTAACATCAGCTTCAAGAGTGATTTTCTTGGATTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCAACCTGGTCAAGAGAAAATGGTTTATGTATATCACTTGTTGATGACTGGATCCATGGAGGAAGATAAATATAGAAGAACTACTTGGAAAGAGTGGGTTTCTTGTATGATTTTCAGTGAGGAGCTTGTTGAAGATCCTTCCGAATGGCAAGCTGAGAAGATTGAAGATGAAATACTCAGGGAGATGGTTGAAGAGGACAAGTCTAAACTCATTCATATGATTATGAAGAATGAAAAGACTTCAACAAGCTAA
Protein sequence

>Msa0017620

MDYNIDFVILKRLSYDNNAIMDIHGAHTFEAVLNGSWEPVELIKIDSGKTTIHFLHAQQTHSNLSSDIRIRSRKATSADCSSFLRPGIDISVLSSFRYDKNSRQSSPSEFHTQKPHKYNQCSCRFHVNFYDDQGSLGTEIKTLKEEDNVIGIEKIFILQRLQRNNCEGSLRENDCSEVNSFRRDSSEDCSSLPQSRLLFGKFLSDLSWFVTASSLKKVAFVIRSVQNKLVHQVMGNDPNISSPMNVLNFKSENGSLEHDYDGEGAMRPMPRSEIGGLRRSKRRTIQLEHYVDCNDGKLEGGDNVSSGHVNNFCTKKLKRRRLFKEHMDLIALWEAIQSKEGVQKKTTNSIDDHEEQDHRGSRTLNADTCEEVIDAYMDNFDSLPEDSTISEERQFEQEKENISESGDEVENPDDLAGIWEEMNTALTSSYLLDGNEGANADEVLADTNKESKETCEHDYRLDEQIGIYCRTCGFVKTEIRYISEPIVTRLKWYEQKKQCSEDTEQVDEDDNNDTFSTDATDLGEPISKENDSVWELIPELKENMHAHQKKAFEFLWKNIAGSMDQSLMKEKSDTSGGCVISHTPGAGKTFLIISFLVSYLKLFPQKRPLVLAPKTTLYTWQKEFEKWNIPVPVYLIHSCRSQIHSTTPKSMVLPGVPNSNGVKHDLDCLEKIKSWNSHPSVLVMGYSSFLALMRTEDKKNSHRKRMAKALRESPGLLILDEGHNPRSTTSKLRKPKFIHEVLEELDSKYRRGKLEEEAPHLLEARARKFFLENIEKKMNSNIDAEKMKGVDVLRKITNGFIDVYDSASSSDTLPGLQIYTLLVNASTEQHEIVHKLQKKMAGCTGYSLEVELLITLGSIHPWLIKTAETCAAKFFSEEELKRLGQSKFDWRKGSKVRFVLSLISRVMSKEKVLIFCHNLAPVRFLIELFENHFQWKNGKEILQLTGEQDFFERTSVIDKFEDRCGDSKILLASINACSEGISLTSASRVIFLDSEWNPSKTKQAIARAFQPGQEKMVYVYHLLMTGSMEEDKYRRTTWKEWVSCMIFSEELVEDPSEWQAEKIEDEILREMVEEDKSKLIHMIMKNEKTSTS*