AlfalfaGEDB | Msa0017620

M. sativa cultivar zhongmu-4 / Msa0017620

KEGG: K10875
GO: GO:0000003 GO:0000018 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0033170 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0017620	sp\|Q9M297\|CLSY1_ARATH	54.115	802	287	13	354	1092	472	1255	0.0	829
Msa0017620	sp\|Q9M297\|CLSY1_ARATH	34.982	283	150	8	29	292	18	285	1.69e-35	150

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0017620	A0A396JWJ3	81.638	1111	144	8	28	1092	7	1103	0.0	1820

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TFs/TRs:

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Gene ID	Type	Classification
Msa0017620	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0017620	MtrunA17_Chr1g0191141	81.638	1111	144	8	28	1092	7	1103	0.0	1820
Msa0017620	MtrunA17_Chr7g0224051	63.256	1124	318	18	55	1091	1	1116	0.0	1343
Msa0017620	MtrunA17_Chr3g0114161	68.341	856	210	11	294	1091	395	1247	0.0	1125
Msa0017620	MtrunA17_Chr3g0114161	62.162	296	90	6	28	302	24	318	1.97e-101	347
Msa0017620	MtrunA17_Chr5g0437621	56.323	854	305	18	299	1091	457	1303	0.0	883
Msa0017620	MtrunA17_Chr5g0437621	41.883	308	128	8	29	301	19	310	1.71e-49	192
Msa0017620	MtrunA17_Chr7g0233031	32.584	712	401	16	418	1078	549	1232	5.42e-99	341
Msa0017620	MtrunA17_Chr7g0233021	33.564	721	369	19	418	1072	537	1213	1.21e-98	339
Msa0017620	MtrunA17_Chr7g0225791	32.432	703	402	16	418	1072	591	1268	5.87e-98	338
Msa0017620	MtrunA17_Chr7g0232971	33.379	728	395	21	418	1087	598	1293	3.31e-97	336

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0017620	AT3G42670.4	54.115	802	289	13	354	1092	472	1257	0.0	830
Msa0017620	AT3G42670.4	34.982	283	150	8	29	292	18	285	1.83e-36	150
Msa0017620	AT3G42670.2	54.115	802	287	13	354	1092	472	1255	0.0	829
Msa0017620	AT3G42670.2	34.982	283	150	8	29	292	18	285	1.72e-36	150
Msa0017620	AT3G42670.3	54.115	802	287	13	354	1092	472	1255	0.0	829
Msa0017620	AT3G42670.3	34.982	283	150	8	29	292	18	285	1.72e-36	150
Msa0017620	AT3G42670.1	54.115	802	287	13	354	1092	472	1255	0.0	829
Msa0017620	AT3G42670.1	34.982	283	150	8	29	292	18	285	1.72e-36	150
Msa0017620	AT5G20420.1	52.619	821	320	11	333	1092	449	1261	0.0	821
Msa0017620	AT5G20420.1	34.007	297	143	8	29	294	18	292	4.74e-37	152

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Find 167 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAATATTCCCGTGC+CGG	0.598414	1_1:+29370970	Msa0017620:CDS
AAAATTTATTCACGAAGTTC+TGG	0.379765	1_1:+29371398	Msa0017620:CDS
AAACTGCAAAAGAAAATGGC+GGG	0.588114	1_1:+29371696	Msa0017620:CDS
AAAGAAAACATATCGGAAAG+CGG	0.678479	1_1:+29369619	Msa0017620:CDS
AAAGAGAAATCTGACACAAG+TGG	0.641751	1_1:+29370800	Msa0017620:CDS
AAAGAGATTCTGCAACTAAC+TGG	0.420585	1_1:+29372008	Msa0017620:CDS
AAAGCATTGAGGGAAAGTCC+TGG	0.590693	1_1:+29371217	Msa0017620:CDS
AAATTCACACAGAAAGCGCA+TGG	0.619203	1_1:+29371192	Msa0017620:CDS
AACCCATGACAAGAACACTA+GGG	0.686530	1_1:-29371129	None:intergenic
AACCTTCTTTAAAGATGACG+CGG	0.674091	1_1:-29369056	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATCAAGAAAAGCTACTT+CGG	+	chr1_1:29368494-29368513	Msa0017620:CDS	30.0%
GTAAGAAGATTGAACTTACT+GGG	-	chr1_1:29368605-29368624	None:intergenic	30.0%
AGTAAGAAGATTGAACTTAC+TGG	-	chr1_1:29368606-29368625	None:intergenic	30.0%
CACTGAAATAAAAACTCTGA+AGG	+	chr1_1:29368835-29368854	Msa0017620:CDS	30.0%
CTTCAACGAAATAATTGTGA+AGG	+	chr1_1:29368905-29368924	Msa0017620:CDS	30.0%
CATTACGTAGATTGTAATGA+TGG	+	chr1_1:29369289-29369308	Msa0017620:CDS	30.0%
AAAGAAAACATATCGGAAAG+CGG	+	chr1_1:29369619-29369638	Msa0017620:CDS	30.0%
ACATCAAGTTATCTTCTTGA+TGG	+	chr1_1:29369703-29369722	Msa0017620:CDS	30.0%
TTATCTTCTTGATGGAAATG+AGG	+	chr1_1:29369711-29369730	Msa0017620:CDS	30.0%
ACAAGTAAAAGACAAGAGAT+GGG	-	chr1_1:29369758-29369777	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	29367993	29372472	29367993	ID=Msa0017620;Name=Msa0017620
chr1_1	mRNA	29367993	29372472	29367993	ID=Msa0017620-mRNA-1;Parent=Msa0017620;Name=Msa0017620-mRNA-1;_AED=0.07;_eAED=0.12;_QI=0\|0\|0\|0.83\|1\|1\|6\|0\|1092
chr1_1	exon	29367993	29368074	29367993	ID=Msa0017620-mRNA-1:exon:9753;Parent=Msa0017620-mRNA-1
chr1_1	exon	29368367	29368605	29368367	ID=Msa0017620-mRNA-1:exon:9754;Parent=Msa0017620-mRNA-1
chr1_1	exon	29368746	29369732	29368746	ID=Msa0017620-mRNA-1:exon:9755;Parent=Msa0017620-mRNA-1
chr1_1	exon	29370058	29370207	29370058	ID=Msa0017620-mRNA-1:exon:9756;Parent=Msa0017620-mRNA-1
chr1_1	exon	29370554	29371296	29370554	ID=Msa0017620-mRNA-1:exon:9757;Parent=Msa0017620-mRNA-1
chr1_1	exon	29371395	29372472	29371395	ID=Msa0017620-mRNA-1:exon:9758;Parent=Msa0017620-mRNA-1
chr1_1	CDS	29367993	29368074	29367993	ID=Msa0017620-mRNA-1:cds;Parent=Msa0017620-mRNA-1
chr1_1	CDS	29368367	29368605	29368367	ID=Msa0017620-mRNA-1:cds;Parent=Msa0017620-mRNA-1
chr1_1	CDS	29368746	29369732	29368746	ID=Msa0017620-mRNA-1:cds;Parent=Msa0017620-mRNA-1
chr1_1	CDS	29370058	29370207	29370058	ID=Msa0017620-mRNA-1:cds;Parent=Msa0017620-mRNA-1
chr1_1	CDS	29370554	29371296	29370554	ID=Msa0017620-mRNA-1:cds;Parent=Msa0017620-mRNA-1
chr1_1	CDS	29371395	29372472	29371395	ID=Msa0017620-mRNA-1:cds;Parent=Msa0017620-mRNA-1

Gene Sequence

>Msa0017620

ATGGATTACAACATTGACTTTGTGATATTGAAAAGATTGTCATACGATAATAACGCTATAATGGATATTCATGGTGCACATACATTTGAAGCAGTATTGAATGGCTCATGGGAACCTGTGGAACTCATAAAAATTGATTCTGGGAAAACTACCATACATTTCCTCCATGCACAACAAACTCATAGTAATTTGTCATCAGACATCCGGATAAGATCAAGAAAAGCTACTTCGGCTGATTGCTCCAGTTTCCTAAGACCTGGAATTGACATATCTGTGCTATCAAGCTTTCGATACGATAAAAACTCACGTCAATCTAGCCCAAGTGAATTCCATACACAAAAACCTCACAAATATAACCAATGTTCATGTCGATTTCATGTAAACTTTTATGATGATCAAGGTTCACTTGGCACTGAAATAAAAACTCTGAAGGAAGAGGATAATGTGATTGGAATTGAGAAAATTTTCATCCTCCAAAGACTTCAACGAAATAATTGTGAAGGATCGTTAAGAGAAAATGATTGTTCTGAAGTTAATTCTTTTAGAAGGGATTCATCAGAAGACTGCTCTTCATTGCCACAATCTAGGTTACTTTTCGGGAAGTTTTTGTCTGATCTTTCCTGGTTTGTTACCGCGTCATCTTTAAAGAAGGTTGCATTCGTCATAAGATCGGTTCAAAACAAGCTTGTGCATCAAGTCATGGGAAATGATCCTAATATTAGTAGTCCTATGAATGTTTTGAACTTCAAATCAGAAAACGGATCACTTGAGCATGATTATGACGGAGAAGGTGCAATGCGGCCAATGCCAAGAAGCGAAATTGGAGGTCTACGACGCTCAAAACGTAGGACCATACAGCTTGAACATTACGTAGATTGTAATGATGGAAAGTTGGAAGGTGGTGATAATGTTTCTTCAGGACATGTTAATAATTTCTGCACAAAGAAGCTTAAGAGAAGGCGGTTGTTTAAGGAGCATATGGATTTGATAGCTTTATGGGAAGCGATACAATCCAAAGAAGGTGTTCAAAAGAAAACGACAAACAGTATCGATGATCATGAAGAACAGGATCATAGAGGCAGTAGAACGTTAAATGCTGATACCTGCGAGGAAGTAATCGATGCTTACATGGATAATTTTGATAGCCTACCAGAAGATTCAACTATCAGTGAAGAAAGACAGTTTGAGCAGGAGAAAGAAAACATATCGGAAAGCGGTGATGAGGTAGAAAATCCTGATGATTTGGCTGGCATATGGGAAGAAATGAATACAGCTTTGACATCAAGTTATCTTCTTGATGGAAATGAGGGTGCAAATGCTGATGAGGTTTTAGCTGACACAAATAAAGAATCCAAGGAAACATGTGAACATGATTATCGATTGGATGAACAAATTGGAATATACTGTCGTACATGCGGCTTTGTGAAAACTGAGATACGATACATTTCTGAACCCATTGTGACAAGGCTAAAATGGTACGAACAGAAGAAACAATGCAGTGAAGATACGGAACAAGTTGATGAAGATGATAATAATGATACGTTCTCAACTGATGCTACTGATCTTGGTGAACCAATATCCAAAGAAAATGATAGTGTTTGGGAATTGATTCCTGAACTCAAAGAAAACATGCATGCACACCAGAAAAAAGCTTTTGAGTTTCTTTGGAAAAACATTGCAGGGTCTATGGATCAATCACTCATGAAAGAGAAATCTGACACAAGTGGTGGCTGTGTTATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTCATCATCTCTTTTCTTGTAAGCTATTTGAAATTATTTCCACAGAAAAGACCATTAGTCCTAGCTCCAAAGACCACACTCTACACATGGCAAAAAGAGTTCGAAAAATGGAATATTCCCGTGCCGGTGTATCTTATCCACAGCTGTCGAAGCCAGATACATTCAACGACACCAAAATCAATGGTTCTGCCTGGAGTTCCAAATTCTAATGGTGTCAAGCATGATTTGGATTGTCTAGAAAAGATCAAAAGCTGGAATTCACACCCTAGTGTTCTTGTCATGGGTTATTCTTCATTTTTAGCCTTAATGAGAACAGAAGATAAGAAAAATTCACACAGAAAGCGCATGGCTAAAGCATTGAGGGAAAGTCCTGGACTCTTGATACTTGATGAGGGACACAATCCTAGAAGTACCACATCAAAGTTGAGGAAACCAAAATTTATTCACGAAGTTCTGGAAGAGTTAGATTCTAAGTACAGAAGAGGCAAACTAGAGGAGGAAGCGCCTCATTTACTAGAGGCACGCGCGAGAAAATTCTTCTTGGAGAACATTGAAAAGAAAATGAACTCAAATATTGATGCGGAAAAAATGAAGGGTGTAGATGTGCTTCGAAAAATCACAAATGGTTTTATAGATGTTTATGACAGTGCAAGTTCTTCTGATACTCTTCCTGGTTTGCAAATATATACATTGCTCGTGAATGCATCCACTGAACAACACGAGATTGTGCATAAACTGCAAAAGAAAATGGCGGGCTGTACCGGTTACTCTCTTGAGGTTGAGCTTTTGATAACACTCGGGTCAATACACCCATGGTTAATCAAAACAGCAGAAACATGTGCAGCTAAGTTTTTCTCTGAAGAAGAGCTGAAGAGACTAGGACAAAGCAAATTTGATTGGAGAAAAGGTTCCAAAGTAAGATTTGTTTTGAGCCTAATCTCACGTGTGATGAGCAAGGAAAAGGTTCTTATCTTCTGTCACAACCTTGCACCAGTGAGGTTTTTAATAGAGTTATTTGAGAATCATTTTCAGTGGAAAAATGGTAAAGAGATTCTGCAACTAACTGGTGAACAAGACTTCTTTGAAAGAACGAGTGTGATAGATAAATTTGAAGATCGTTGTGGCGATTCAAAGATACTTCTTGCTTCAATCAATGCTTGTTCTGAAGGTATCAGTTTAACATCAGCTTCAAGAGTGATTTTCTTGGATTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCAACCTGGTCAAGAGAAAATGGTTTATGTATATCACTTGTTGATGACTGGATCCATGGAGGAAGATAAATATAGAAGAACTACTTGGAAAGAGTGGGTTTCTTGTATGATTTTCAGTGAGGAGCTTGTTGAAGATCCTTCCGAATGGCAAGCTGAGAAGATTGAAGATGAAATACTCAGGGAGATGGTTGAAGAGGACAAGTCTAAACTCATTCATATGATTATGAAGAATGAAAAGACTTCAACAAGCTAA

Protein sequence

>Msa0017620

MDYNIDFVILKRLSYDNNAIMDIHGAHTFEAVLNGSWEPVELIKIDSGKTTIHFLHAQQTHSNLSSDIRIRSRKATSADCSSFLRPGIDISVLSSFRYDKNSRQSSPSEFHTQKPHKYNQCSCRFHVNFYDDQGSLGTEIKTLKEEDNVIGIEKIFILQRLQRNNCEGSLRENDCSEVNSFRRDSSEDCSSLPQSRLLFGKFLSDLSWFVTASSLKKVAFVIRSVQNKLVHQVMGNDPNISSPMNVLNFKSENGSLEHDYDGEGAMRPMPRSEIGGLRRSKRRTIQLEHYVDCNDGKLEGGDNVSSGHVNNFCTKKLKRRRLFKEHMDLIALWEAIQSKEGVQKKTTNSIDDHEEQDHRGSRTLNADTCEEVIDAYMDNFDSLPEDSTISEERQFEQEKENISESGDEVENPDDLAGIWEEMNTALTSSYLLDGNEGANADEVLADTNKESKETCEHDYRLDEQIGIYCRTCGFVKTEIRYISEPIVTRLKWYEQKKQCSEDTEQVDEDDNNDTFSTDATDLGEPISKENDSVWELIPELKENMHAHQKKAFEFLWKNIAGSMDQSLMKEKSDTSGGCVISHTPGAGKTFLIISFLVSYLKLFPQKRPLVLAPKTTLYTWQKEFEKWNIPVPVYLIHSCRSQIHSTTPKSMVLPGVPNSNGVKHDLDCLEKIKSWNSHPSVLVMGYSSFLALMRTEDKKNSHRKRMAKALRESPGLLILDEGHNPRSTTSKLRKPKFIHEVLEELDSKYRRGKLEEEAPHLLEARARKFFLENIEKKMNSNIDAEKMKGVDVLRKITNGFIDVYDSASSSDTLPGLQIYTLLVNASTEQHEIVHKLQKKMAGCTGYSLEVELLITLGSIHPWLIKTAETCAAKFFSEEELKRLGQSKFDWRKGSKVRFVLSLISRVMSKEKVLIFCHNLAPVRFLIELFENHFQWKNGKEILQLTGEQDFFERTSVIDKFEDRCGDSKILLASINACSEGISLTSASRVIFLDSEWNPSKTKQAIARAFQPGQEKMVYVYHLLMTGSMEEDKYRRTTWKEWVSCMIFSEELVEDPSEWQAEKIEDEILREMVEEDKSKLIHMIMKNEKTSTS*