Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018520 | RHN78877.1 | 89.394 | 198 | 19 | 1 | 1 | 196 | 1 | 198 | 2.30e-107 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018520 | sp|Q9ZWS9|ARR3_ARATH | 59.406 | 202 | 61 | 5 | 4 | 188 | 29 | 226 | 1.17e-70 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0018520 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018520 | MtrunA17_Chr1g0170741 | 89.394 | 198 | 19 | 1 | 1 | 196 | 1 | 198 | 2.12e-111 | 316 |
| Msa0018520 | MtrunA17_Chr5g0414931 | 67.089 | 237 | 37 | 4 | 1 | 196 | 1 | 237 | 7.66e-89 | 260 |
| Msa0018520 | MtrunA17_Chr4g0059571 | 57.778 | 180 | 70 | 2 | 3 | 179 | 21 | 197 | 3.13e-62 | 192 |
| Msa0018520 | MtrunA17_Chr3g0118211 | 60.377 | 159 | 57 | 2 | 7 | 162 | 22 | 177 | 2.55e-59 | 184 |
| Msa0018520 | MtrunA17_Chr7g0256551 | 52.332 | 193 | 77 | 3 | 7 | 184 | 8 | 200 | 5.02e-57 | 179 |
| Msa0018520 | MtrunA17_Chr3g0082861 | 56.129 | 155 | 59 | 2 | 7 | 152 | 3 | 157 | 4.57e-52 | 164 |
| Msa0018520 | MtrunA17_Chr8g0352871 | 58.451 | 142 | 54 | 2 | 7 | 143 | 8 | 149 | 1.61e-49 | 158 |
| Msa0018520 | MtrunA17_Chr3g0128691 | 58.696 | 138 | 50 | 3 | 4 | 138 | 14 | 147 | 1.91e-49 | 157 |
| Msa0018520 | MtrunA17_Chr3g0124861 | 50.676 | 148 | 57 | 3 | 6 | 138 | 20 | 166 | 2.58e-42 | 142 |
| Msa0018520 | MtrunA17_Chr4g0021731 | 59.756 | 82 | 30 | 2 | 7 | 88 | 10 | 88 | 5.41e-25 | 93.2 |
| Msa0018520 | MtrunA17_Chr3g0127941 | 29.932 | 147 | 88 | 2 | 8 | 151 | 56 | 190 | 5.55e-17 | 78.6 |
| Msa0018520 | MtrunA17_Chr4g0030271 | 35.075 | 134 | 75 | 2 | 8 | 141 | 89 | 210 | 7.49e-17 | 78.2 |
| Msa0018520 | MtrunA17_Chr7g0276361 | 31.757 | 148 | 87 | 3 | 14 | 161 | 22 | 155 | 3.91e-16 | 75.9 |
| Msa0018520 | MtrunA17_Chr8g0345901 | 30.882 | 136 | 82 | 1 | 8 | 143 | 36 | 159 | 2.61e-14 | 70.5 |
| Msa0018520 | MtrunA17_Chr1g0181811 | 28.788 | 132 | 82 | 1 | 10 | 141 | 87 | 206 | 2.01e-13 | 68.2 |
| Msa0018520 | MtrunA17_Chr1g0149851 | 29.054 | 148 | 90 | 3 | 10 | 157 | 11 | 143 | 7.98e-13 | 66.2 |
| Msa0018520 | MtrunA17_Chr4g0074411 | 28.676 | 136 | 82 | 3 | 8 | 143 | 22 | 142 | 1.85e-12 | 65.1 |
| Msa0018520 | MtrunA17_Chr4g0074401 | 28.676 | 136 | 82 | 3 | 8 | 143 | 21 | 141 | 1.98e-12 | 65.1 |
| Msa0018520 | MtrunA17_Chr8g0376881 | 28.676 | 136 | 82 | 3 | 8 | 143 | 29 | 149 | 3.34e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018520 | AT1G59940.1 | 59.406 | 202 | 61 | 5 | 4 | 188 | 29 | 226 | 1.19e-71 | 217 |
| Msa0018520 | AT1G59940.2 | 59.406 | 202 | 61 | 5 | 4 | 188 | 121 | 318 | 1.77e-70 | 217 |
| Msa0018520 | AT1G10470.3 | 55.310 | 226 | 58 | 6 | 6 | 192 | 18 | 239 | 5.89e-69 | 211 |
| Msa0018520 | AT1G10470.1 | 55.310 | 226 | 58 | 6 | 6 | 192 | 32 | 253 | 9.93e-69 | 210 |
| Msa0018520 | AT3G48100.1 | 64.901 | 151 | 51 | 1 | 8 | 158 | 25 | 173 | 2.70e-62 | 191 |
| Msa0018520 | AT5G62920.1 | 71.875 | 128 | 33 | 1 | 8 | 135 | 25 | 149 | 9.15e-60 | 185 |
| Msa0018520 | AT1G74890.1 | 71.318 | 129 | 34 | 1 | 7 | 135 | 17 | 142 | 1.53e-58 | 182 |
| Msa0018520 | AT1G19050.1 | 64.706 | 136 | 45 | 1 | 7 | 142 | 23 | 155 | 8.82e-57 | 178 |
| Msa0018520 | AT2G40670.1 | 59.259 | 135 | 55 | 0 | 4 | 138 | 25 | 159 | 6.30e-54 | 169 |
| Msa0018520 | AT3G56380.1 | 61.194 | 134 | 48 | 2 | 6 | 138 | 18 | 148 | 1.21e-52 | 166 |
| Msa0018520 | AT2G40670.2 | 58.824 | 136 | 55 | 1 | 4 | 138 | 25 | 160 | 3.88e-52 | 165 |
| Msa0018520 | AT3G57040.2 | 58.273 | 139 | 51 | 2 | 7 | 138 | 8 | 146 | 6.46e-52 | 167 |
| Msa0018520 | AT3G57040.1 | 58.273 | 139 | 51 | 2 | 7 | 138 | 8 | 146 | 6.46e-52 | 167 |
| Msa0018520 | AT2G41310.1 | 58.741 | 143 | 53 | 2 | 1 | 138 | 3 | 144 | 1.64e-51 | 166 |
| Msa0018520 | AT3G56380.2 | 60.741 | 135 | 48 | 3 | 6 | 138 | 18 | 149 | 6.71e-51 | 161 |
| Msa0018520 | AT1G10470.2 | 42.169 | 166 | 48 | 9 | 70 | 192 | 17 | 177 | 1.93e-22 | 89.7 |
| Msa0018520 | AT5G24470.1 | 30.216 | 139 | 83 | 3 | 8 | 146 | 52 | 176 | 2.59e-15 | 73.9 |
| Msa0018520 | AT2G46790.3 | 31.343 | 134 | 80 | 2 | 8 | 141 | 37 | 158 | 2.66e-15 | 73.6 |
| Msa0018520 | AT2G46790.1 | 31.343 | 134 | 80 | 2 | 8 | 141 | 37 | 158 | 3.43e-15 | 73.6 |
| Msa0018520 | AT5G60100.7 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.03e-13 | 68.9 |
| Msa0018520 | AT5G60100.6 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.03e-13 | 68.9 |
| Msa0018520 | AT5G60100.4 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.03e-13 | 68.9 |
| Msa0018520 | AT5G60100.2 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.45e-13 | 68.9 |
| Msa0018520 | AT5G60100.5 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.68e-13 | 68.6 |
| Msa0018520 | AT5G60100.3 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.68e-13 | 68.6 |
| Msa0018520 | AT5G60100.1 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.68e-13 | 68.6 |
| Msa0018520 | AT5G02810.1 | 28.358 | 134 | 84 | 1 | 8 | 141 | 78 | 199 | 1.06e-12 | 66.2 |
| Msa0018520 | AT2G07440.1 | 58.000 | 50 | 21 | 0 | 89 | 138 | 9 | 58 | 5.34e-12 | 61.2 |
Find 40 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGATTACATGCTTCTTC+TGG | 0.290924 | 1_1:-31235122 | None:intergenic |
| ATTGAAAATATTCAGATGTT+TGG | 0.307010 | 1_1:+31234986 | Msa0018520:intron |
| AACTCATAACCAGTCATTTC+TGG | 0.328147 | 1_1:-31234181 | None:intergenic |
| GCAGGAATCGTCCACTTCTA+AGG | 0.353675 | 1_1:+31234327 | Msa0018520:intron |
| ATGTGAAGGTGATGATAAAA+TGG | 0.360971 | 1_1:-31235159 | None:intergenic |
| TTTGTTGCCTTAGCCTTTGA+AGG | 0.366124 | 1_1:+31234129 | Msa0018520:intron |
| CTCAAAATTTCTGCTTGTAA+AGG | 0.386939 | 1_1:+31233639 | Msa0018520:CDS |
| TTCTGAAGAGGTTCATGTAT+TGG | 0.402386 | 1_1:+31233572 | Msa0018520:CDS |
| TTAGTTACTGCTGTGGATAG+TGG | 0.438893 | 1_1:+31233950 | Msa0018520:intron |
| TTCACATCACATAATTTCAC+TGG | 0.453732 | 1_1:-31235038 | None:intergenic |
| TATAACAGACCTGTCTATGC+GGG | 0.479102 | 1_1:-31234389 | None:intergenic |
| TCAGAAGACATAATCACTAC+TGG | 0.489512 | 1_1:-31234355 | None:intergenic |
| ATATTCTGCCCCGCATAGAC+AGG | 0.490699 | 1_1:+31234380 | Msa0018520:CDS |
| TACTGGAATTTCCTTAGAAG+TGG | 0.505560 | 1_1:-31234338 | None:intergenic |
| ATATTCAGATGTTTGGAAGA+AGG | 0.511460 | 1_1:+31234993 | Msa0018520:intron |
| TATTGCATGCCAGAAATGAC+TGG | 0.520879 | 1_1:+31234172 | Msa0018520:CDS |
| TTGATCGGAAAGTTATTGAA+AGG | 0.524082 | 1_1:+31233613 | Msa0018520:CDS |
| TGACAACCCAAATAGTCATT+CGG | 0.532453 | 1_1:-31235249 | None:intergenic |
| ATAACAAGATCCACCTTCAA+AGG | 0.539532 | 1_1:-31234142 | None:intergenic |
| GTTGCCTTAGCCTTTGAAGG+TGG | 0.539999 | 1_1:+31234132 | Msa0018520:intron |
| TACATGACAACAAGGGAGGT+TGG | 0.562595 | 1_1:+31235074 | Msa0018520:CDS |
| TGCTAGATTCTCCAATCAGA+CGG | 0.573752 | 1_1:+31235210 | Msa0018520:CDS |
| AGCACACTGGATGCAGACAA+TGG | 0.579848 | 1_1:-31235191 | None:intergenic |
| GAGAACTTTAGTTACTGCTG+TGG | 0.597773 | 1_1:+31233943 | Msa0018520:intron |
| ACAACAAGGGAGGTTGGAGT+AGG | 0.598300 | 1_1:+31235080 | Msa0018520:CDS |
| ATGTTTGGAAGAAGGTGCAA+AGG | 0.598645 | 1_1:+31235001 | Msa0018520:CDS |
| AGAGAGAAGTCTGAATCTGA+TGG | 0.604808 | 1_1:+31234010 | Msa0018520:CDS |
| GATGGAGACAAATTCTGAAG+AGG | 0.610289 | 1_1:+31233560 | None:intergenic |
| TTGATGATAGTCTCATTGAT+CGG | 0.612021 | 1_1:+31233598 | Msa0018520:CDS |
| TGAAGGGTTACATGACAACA+AGG | 0.633631 | 1_1:+31235066 | Msa0018520:CDS |
| ATATAACAGACCTGTCTATG+CGG | 0.634079 | 1_1:-31234390 | None:intergenic |
| GATTGGAGAATCTAGCACAC+TGG | 0.649201 | 1_1:-31235204 | None:intergenic |
| ATGTGATGTGAAACGACTGA+AGG | 0.650404 | 1_1:+31235049 | Msa0018520:CDS |
| TGTGATGTGAAACGACTGAA+GGG | 0.672931 | 1_1:+31235050 | Msa0018520:CDS |
| AATGGAGATGATGAATGTGA+AGG | 0.695750 | 1_1:-31235173 | None:intergenic |
| ATAACAGACCTGTCTATGCG+GGG | 0.702996 | 1_1:-31234388 | None:intergenic |
| GAAGGTGATGATAAAATGGA+CGG | 0.714599 | 1_1:-31235155 | None:intergenic |
| GGGTTACATGACAACAAGGG+AGG | 0.715675 | 1_1:+31235070 | Msa0018520:CDS |
| GGTGATGATAAAATGGACGG+TGG | 0.739254 | 1_1:-31235152 | None:intergenic |
| GAAGGGTTACATGACAACAA+GGG | 0.758159 | 1_1:+31235067 | Msa0018520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATTTAATGTGTTGA+TGG | + | chr1_1:31233905-31233924 | Msa0018520:intron | 15.0% |
| !!! | TATAGTAATGATTTTTTCAA+TGG | - | chr1_1:31234245-31234264 | None:intergenic | 15.0% |
| !! | TTTAAGGGATTATTATTATT+AGG | + | chr1_1:31234427-31234446 | Msa0018520:intron | 15.0% |
| !!! | AACAATTTTTGAAAAATAGT+TGG | - | chr1_1:31234906-31234925 | None:intergenic | 15.0% |
| !!! | TTTAAAATTTAATGTGTTGA+TGG | + | chr1_1:31233905-31233924 | Msa0018520:intron | 15.0% |
| !!! | TATAGTAATGATTTTTTCAA+TGG | - | chr1_1:31234245-31234264 | None:intergenic | 15.0% |
| !! | TTTAAGGGATTATTATTATT+AGG | + | chr1_1:31234427-31234446 | Msa0018520:intron | 15.0% |
| !!! | AACAATTTTTGAAAAATAGT+TGG | - | chr1_1:31234906-31234925 | None:intergenic | 15.0% |
| !!! | TACGAAATAGATGTTTTTAA+AGG | + | chr1_1:31234554-31234573 | Msa0018520:intron | 20.0% |
| !!! | ACGAAATAGATGTTTTTAAA+GGG | + | chr1_1:31234555-31234574 | Msa0018520:intron | 20.0% |
| !!! | ATTTAAGTGTCTTTTTTCTT+TGG | - | chr1_1:31234711-31234730 | None:intergenic | 20.0% |
| !! | ATTGAAAATATTCAGATGTT+TGG | + | chr1_1:31234986-31235005 | Msa0018520:intron | 20.0% |
| !!! | TACGAAATAGATGTTTTTAA+AGG | + | chr1_1:31234554-31234573 | Msa0018520:intron | 20.0% |
| !!! | ACGAAATAGATGTTTTTAAA+GGG | + | chr1_1:31234555-31234574 | Msa0018520:intron | 20.0% |
| !!! | ATTTAAGTGTCTTTTTTCTT+TGG | - | chr1_1:31234711-31234730 | None:intergenic | 20.0% |
| !! | ATTGAAAATATTCAGATGTT+TGG | + | chr1_1:31234986-31235005 | Msa0018520:intron | 20.0% |
| ! | ATAACACTCTATATAAAGCA+CGG | - | chr1_1:31233870-31233889 | None:intergenic | 25.0% |
| !!! | TTGATGGTTTTTGTTTTTGT+TGG | + | chr1_1:31233921-31233940 | Msa0018520:intron | 25.0% |
| ! | TGAGTTGCTCAAAAAAATTA+AGG | + | chr1_1:31234198-31234217 | Msa0018520:CDS | 25.0% |
| !!! | CGAAATAGATGTTTTTAAAG+GGG | + | chr1_1:31234556-31234575 | Msa0018520:intron | 25.0% |
| !! | TTTTCAATTGTAACAAACCA+TGG | + | chr1_1:31234603-31234622 | Msa0018520:intron | 25.0% |
| !! | GTCATTAAAAAGTATAACCA+TGG | - | chr1_1:31234623-31234642 | None:intergenic | 25.0% |
| !! | TTATTGTTATTAGTTACCGT+TGG | + | chr1_1:31234924-31234943 | Msa0018520:intron | 25.0% |
| ! | ATAACACTCTATATAAAGCA+CGG | - | chr1_1:31233870-31233889 | None:intergenic | 25.0% |
| !!! | TTGATGGTTTTTGTTTTTGT+TGG | + | chr1_1:31233921-31233940 | Msa0018520:intron | 25.0% |
| ! | TGAGTTGCTCAAAAAAATTA+AGG | + | chr1_1:31234198-31234217 | Msa0018520:CDS | 25.0% |
| !!! | CGAAATAGATGTTTTTAAAG+GGG | + | chr1_1:31234556-31234575 | Msa0018520:intron | 25.0% |
| !! | TTTTCAATTGTAACAAACCA+TGG | + | chr1_1:31234603-31234622 | Msa0018520:intron | 25.0% |
| !! | GTCATTAAAAAGTATAACCA+TGG | - | chr1_1:31234623-31234642 | None:intergenic | 25.0% |
| !! | TTATTGTTATTAGTTACCGT+TGG | + | chr1_1:31234924-31234943 | Msa0018520:intron | 25.0% |
| ! | TTGATGATAGTCTCATTGAT+CGG | + | chr1_1:31233598-31233617 | Msa0018520:CDS | 30.0% |
| TTGATCGGAAAGTTATTGAA+AGG | + | chr1_1:31233613-31233632 | Msa0018520:CDS | 30.0% | |
| CTCAAAATTTCTGCTTGTAA+AGG | + | chr1_1:31233639-31233658 | Msa0018520:CDS | 30.0% | |
| ACACGTGTAATTATATGTGT+CGG | - | chr1_1:31233836-31233855 | None:intergenic | 30.0% | |
| TAACACTCTATATAAAGCAC+GGG | - | chr1_1:31233869-31233888 | None:intergenic | 30.0% | |
| CCTGCTTCAAAATGAAATTT+CGG | - | chr1_1:31234312-31234331 | None:intergenic | 30.0% | |
| AACTTCATCTCAATTTCCAA+CGG | - | chr1_1:31234943-31234962 | None:intergenic | 30.0% | |
| ATATTCAGATGTTTGGAAGA+AGG | + | chr1_1:31234993-31235012 | Msa0018520:intron | 30.0% | |
| TTCACATCACATAATTTCAC+TGG | - | chr1_1:31235041-31235060 | None:intergenic | 30.0% | |
| ATGTGAAGGTGATGATAAAA+TGG | - | chr1_1:31235162-31235181 | None:intergenic | 30.0% | |
| ! | ATCATTTTAAACCGTCTGAT+TGG | - | chr1_1:31235224-31235243 | None:intergenic | 30.0% |
| ! | TTGATGATAGTCTCATTGAT+CGG | + | chr1_1:31233598-31233617 | Msa0018520:CDS | 30.0% |
| TTGATCGGAAAGTTATTGAA+AGG | + | chr1_1:31233613-31233632 | Msa0018520:CDS | 30.0% | |
| CTCAAAATTTCTGCTTGTAA+AGG | + | chr1_1:31233639-31233658 | Msa0018520:CDS | 30.0% | |
| ACACGTGTAATTATATGTGT+CGG | - | chr1_1:31233836-31233855 | None:intergenic | 30.0% | |
| TAACACTCTATATAAAGCAC+GGG | - | chr1_1:31233869-31233888 | None:intergenic | 30.0% | |
| CCTGCTTCAAAATGAAATTT+CGG | - | chr1_1:31234312-31234331 | None:intergenic | 30.0% | |
| AACTTCATCTCAATTTCCAA+CGG | - | chr1_1:31234943-31234962 | None:intergenic | 30.0% | |
| ATATTCAGATGTTTGGAAGA+AGG | + | chr1_1:31234993-31235012 | Msa0018520:intron | 30.0% | |
| TTCACATCACATAATTTCAC+TGG | - | chr1_1:31235041-31235060 | None:intergenic | 30.0% | |
| ATGTGAAGGTGATGATAAAA+TGG | - | chr1_1:31235162-31235181 | None:intergenic | 30.0% | |
| ! | ATCATTTTAAACCGTCTGAT+TGG | - | chr1_1:31235224-31235243 | None:intergenic | 30.0% |
| ! | TTCTGAAGAGGTTCATGTAT+TGG | + | chr1_1:31233572-31233591 | Msa0018520:CDS | 35.0% |
| GTAAAGGTGAGTTTGTGATT+TGG | + | chr1_1:31233655-31233674 | Msa0018520:intron | 35.0% | |
| !!! | AATCAGAGCACTGCAATTTT+TGG | + | chr1_1:31233973-31233992 | Msa0018520:CDS | 35.0% |
| !!! | ATCAGAGCACTGCAATTTTT+GGG | + | chr1_1:31233974-31233993 | Msa0018520:CDS | 35.0% |
| ! | TCTGATGGTTCTATTGTATG+TGG | + | chr1_1:31234025-31234044 | Msa0018520:intron | 35.0% |
| ATAACAAGATCCACCTTCAA+AGG | - | chr1_1:31234145-31234164 | None:intergenic | 35.0% | |
| AACTCATAACCAGTCATTTC+TGG | - | chr1_1:31234184-31234203 | None:intergenic | 35.0% | |
| !!! | CCGAAATTTCATTTTGAAGC+AGG | + | chr1_1:31234309-31234328 | Msa0018520:intron | 35.0% |
| TACTGGAATTTCCTTAGAAG+TGG | - | chr1_1:31234341-31234360 | None:intergenic | 35.0% | |
| TCAGAAGACATAATCACTAC+TGG | - | chr1_1:31234358-31234377 | None:intergenic | 35.0% | |
| ATATAACAGACCTGTCTATG+CGG | - | chr1_1:31234393-31234412 | None:intergenic | 35.0% | |
| GAAGGTGATGATAAAATGGA+CGG | - | chr1_1:31235158-31235177 | None:intergenic | 35.0% | |
| AATGGAGATGATGAATGTGA+AGG | - | chr1_1:31235176-31235195 | None:intergenic | 35.0% | |
| ! | TTCTGAAGAGGTTCATGTAT+TGG | + | chr1_1:31233572-31233591 | Msa0018520:CDS | 35.0% |
| GTAAAGGTGAGTTTGTGATT+TGG | + | chr1_1:31233655-31233674 | Msa0018520:intron | 35.0% | |
| !!! | AATCAGAGCACTGCAATTTT+TGG | + | chr1_1:31233973-31233992 | Msa0018520:CDS | 35.0% |
| !!! | ATCAGAGCACTGCAATTTTT+GGG | + | chr1_1:31233974-31233993 | Msa0018520:CDS | 35.0% |
| ! | TCTGATGGTTCTATTGTATG+TGG | + | chr1_1:31234025-31234044 | Msa0018520:intron | 35.0% |
| ATAACAAGATCCACCTTCAA+AGG | - | chr1_1:31234145-31234164 | None:intergenic | 35.0% | |
| AACTCATAACCAGTCATTTC+TGG | - | chr1_1:31234184-31234203 | None:intergenic | 35.0% | |
| !!! | CCGAAATTTCATTTTGAAGC+AGG | + | chr1_1:31234309-31234328 | Msa0018520:intron | 35.0% |
| TACTGGAATTTCCTTAGAAG+TGG | - | chr1_1:31234341-31234360 | None:intergenic | 35.0% | |
| TCAGAAGACATAATCACTAC+TGG | - | chr1_1:31234358-31234377 | None:intergenic | 35.0% | |
| ATATAACAGACCTGTCTATG+CGG | - | chr1_1:31234393-31234412 | None:intergenic | 35.0% | |
| GAAGGTGATGATAAAATGGA+CGG | - | chr1_1:31235158-31235177 | None:intergenic | 35.0% | |
| AATGGAGATGATGAATGTGA+AGG | - | chr1_1:31235176-31235195 | None:intergenic | 35.0% | |
| GATTAGACGTGTTCTGATGT+CGG | + | chr1_1:31233780-31233799 | Msa0018520:intron | 40.0% | |
| !! | TATATGTGTCGGTGTCATGT+TGG | - | chr1_1:31233825-31233844 | None:intergenic | 40.0% |
| GAGAACTTTAGTTACTGCTG+TGG | + | chr1_1:31233943-31233962 | Msa0018520:intron | 40.0% | |
| TTAGTTACTGCTGTGGATAG+TGG | + | chr1_1:31233950-31233969 | Msa0018520:intron | 40.0% | |
| !!! | TCAGAGCACTGCAATTTTTG+GGG | + | chr1_1:31233975-31233994 | Msa0018520:CDS | 40.0% |
| AGAGAGAAGTCTGAATCTGA+TGG | + | chr1_1:31234010-31234029 | Msa0018520:CDS | 40.0% | |
| ! | TTTGTTGCCTTAGCCTTTGA+AGG | + | chr1_1:31234129-31234148 | Msa0018520:intron | 40.0% |
| TATTGCATGCCAGAAATGAC+TGG | + | chr1_1:31234172-31234191 | Msa0018520:CDS | 40.0% | |
| TATAACAGACCTGTCTATGC+GGG | - | chr1_1:31234392-31234411 | None:intergenic | 40.0% | |
| ! | ATGTTTGGAAGAAGGTGCAA+AGG | + | chr1_1:31235001-31235020 | Msa0018520:CDS | 40.0% |
| ATGTGATGTGAAACGACTGA+AGG | + | chr1_1:31235049-31235068 | Msa0018520:CDS | 40.0% | |
| TGTGATGTGAAACGACTGAA+GGG | + | chr1_1:31235050-31235069 | Msa0018520:CDS | 40.0% | |
| TGAAGGGTTACATGACAACA+AGG | + | chr1_1:31235066-31235085 | Msa0018520:CDS | 40.0% | |
| GAAGGGTTACATGACAACAA+GGG | + | chr1_1:31235067-31235086 | Msa0018520:CDS | 40.0% | |
| GAGTGATTACATGCTTCTTC+TGG | - | chr1_1:31235125-31235144 | None:intergenic | 40.0% | |
| TGCTAGATTCTCCAATCAGA+CGG | + | chr1_1:31235210-31235229 | Msa0018520:CDS | 40.0% | |
| GATTAGACGTGTTCTGATGT+CGG | + | chr1_1:31233780-31233799 | Msa0018520:intron | 40.0% | |
| !! | TATATGTGTCGGTGTCATGT+TGG | - | chr1_1:31233825-31233844 | None:intergenic | 40.0% |
| GAGAACTTTAGTTACTGCTG+TGG | + | chr1_1:31233943-31233962 | Msa0018520:intron | 40.0% | |
| TTAGTTACTGCTGTGGATAG+TGG | + | chr1_1:31233950-31233969 | Msa0018520:intron | 40.0% | |
| !!! | TCAGAGCACTGCAATTTTTG+GGG | + | chr1_1:31233975-31233994 | Msa0018520:CDS | 40.0% |
| AGAGAGAAGTCTGAATCTGA+TGG | + | chr1_1:31234010-31234029 | Msa0018520:CDS | 40.0% | |
| ! | TTTGTTGCCTTAGCCTTTGA+AGG | + | chr1_1:31234129-31234148 | Msa0018520:intron | 40.0% |
| TATTGCATGCCAGAAATGAC+TGG | + | chr1_1:31234172-31234191 | Msa0018520:CDS | 40.0% | |
| TATAACAGACCTGTCTATGC+GGG | - | chr1_1:31234392-31234411 | None:intergenic | 40.0% | |
| ! | ATGTTTGGAAGAAGGTGCAA+AGG | + | chr1_1:31235001-31235020 | Msa0018520:CDS | 40.0% |
| ATGTGATGTGAAACGACTGA+AGG | + | chr1_1:31235049-31235068 | Msa0018520:CDS | 40.0% | |
| TGTGATGTGAAACGACTGAA+GGG | + | chr1_1:31235050-31235069 | Msa0018520:CDS | 40.0% | |
| TGAAGGGTTACATGACAACA+AGG | + | chr1_1:31235066-31235085 | Msa0018520:CDS | 40.0% | |
| GAAGGGTTACATGACAACAA+GGG | + | chr1_1:31235067-31235086 | Msa0018520:CDS | 40.0% | |
| GAGTGATTACATGCTTCTTC+TGG | - | chr1_1:31235125-31235144 | None:intergenic | 40.0% | |
| TGCTAGATTCTCCAATCAGA+CGG | + | chr1_1:31235210-31235229 | Msa0018520:CDS | 40.0% | |
| !!! | AGCACTGCAATTTTTGGGGT+TGG | + | chr1_1:31233979-31233998 | Msa0018520:CDS | 45.0% |
| AGATCCACCTTCAAAGGCTA+AGG | - | chr1_1:31234139-31234158 | None:intergenic | 45.0% | |
| ATAACAGACCTGTCTATGCG+GGG | - | chr1_1:31234391-31234410 | None:intergenic | 45.0% | |
| TACATGACAACAAGGGAGGT+TGG | + | chr1_1:31235074-31235093 | Msa0018520:CDS | 45.0% | |
| GGTGATGATAAAATGGACGG+TGG | - | chr1_1:31235155-31235174 | None:intergenic | 45.0% | |
| GATTGGAGAATCTAGCACAC+TGG | - | chr1_1:31235207-31235226 | None:intergenic | 45.0% | |
| !!! | AGCACTGCAATTTTTGGGGT+TGG | + | chr1_1:31233979-31233998 | Msa0018520:CDS | 45.0% |
| AGATCCACCTTCAAAGGCTA+AGG | - | chr1_1:31234139-31234158 | None:intergenic | 45.0% | |
| ATAACAGACCTGTCTATGCG+GGG | - | chr1_1:31234391-31234410 | None:intergenic | 45.0% | |
| TACATGACAACAAGGGAGGT+TGG | + | chr1_1:31235074-31235093 | Msa0018520:CDS | 45.0% | |
| GGTGATGATAAAATGGACGG+TGG | - | chr1_1:31235155-31235174 | None:intergenic | 45.0% | |
| GATTGGAGAATCTAGCACAC+TGG | - | chr1_1:31235207-31235226 | None:intergenic | 45.0% | |
| !!! | ACATTTTATTAATTTTATTT+TGG | - | chr1_1:31233686-31233705 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTAAACTTTTTTA+AGG | + | chr1_1:31234411-31234430 | Msa0018520:intron | 5.0% |
| !!! | TTTTTTTTAAACTTTTTTAA+GGG | + | chr1_1:31234412-31234431 | Msa0018520:intron | 5.0% |
| !! | TAATTTATACTTATATATAA+TGG | - | chr1_1:31234744-31234763 | None:intergenic | 5.0% |
| !!! | ACATTTTATTAATTTTATTT+TGG | - | chr1_1:31233686-31233705 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTAAACTTTTTTA+AGG | + | chr1_1:31234411-31234430 | Msa0018520:intron | 5.0% |
| !!! | TTTTTTTTAAACTTTTTTAA+GGG | + | chr1_1:31234412-31234431 | Msa0018520:intron | 5.0% |
| !! | TAATTTATACTTATATATAA+TGG | - | chr1_1:31234744-31234763 | None:intergenic | 5.0% |
| ! | GTTGCCTTAGCCTTTGAAGG+TGG | + | chr1_1:31234132-31234151 | Msa0018520:intron | 50.0% |
| GCAGGAATCGTCCACTTCTA+AGG | + | chr1_1:31234327-31234346 | Msa0018520:intron | 50.0% | |
| ATATTCTGCCCCGCATAGAC+AGG | + | chr1_1:31234380-31234399 | Msa0018520:CDS | 50.0% | |
| GGGTTACATGACAACAAGGG+AGG | + | chr1_1:31235070-31235089 | Msa0018520:CDS | 50.0% | |
| ACAACAAGGGAGGTTGGAGT+AGG | + | chr1_1:31235080-31235099 | Msa0018520:CDS | 50.0% | |
| AGCACACTGGATGCAGACAA+TGG | - | chr1_1:31235194-31235213 | None:intergenic | 50.0% | |
| ! | GTTGCCTTAGCCTTTGAAGG+TGG | + | chr1_1:31234132-31234151 | Msa0018520:intron | 50.0% |
| GCAGGAATCGTCCACTTCTA+AGG | + | chr1_1:31234327-31234346 | Msa0018520:intron | 50.0% | |
| ATATTCTGCCCCGCATAGAC+AGG | + | chr1_1:31234380-31234399 | Msa0018520:CDS | 50.0% | |
| GGGTTACATGACAACAAGGG+AGG | + | chr1_1:31235070-31235089 | Msa0018520:CDS | 50.0% | |
| ACAACAAGGGAGGTTGGAGT+AGG | + | chr1_1:31235080-31235099 | Msa0018520:CDS | 50.0% | |
| AGCACACTGGATGCAGACAA+TGG | - | chr1_1:31235194-31235213 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 31233561 | 31235256 | 31233561 | ID=Msa0018520;Name=Msa0018520 |
| chr1_1 | mRNA | 31233561 | 31235256 | 31233561 | ID=Msa0018520-mRNA-1;Parent=Msa0018520;Name=Msa0018520-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|5|0|196 |
| chr1_1 | exon | 31233561 | 31233660 | 31233561 | ID=Msa0018520-mRNA-1:exon:10303;Parent=Msa0018520-mRNA-1 |
| chr1_1 | exon | 31233954 | 31234039 | 31233954 | ID=Msa0018520-mRNA-1:exon:10304;Parent=Msa0018520-mRNA-1 |
| chr1_1 | exon | 31234142 | 31234219 | 31234142 | ID=Msa0018520-mRNA-1:exon:10305;Parent=Msa0018520-mRNA-1 |
| chr1_1 | exon | 31234331 | 31234401 | 31234331 | ID=Msa0018520-mRNA-1:exon:10306;Parent=Msa0018520-mRNA-1 |
| chr1_1 | exon | 31235001 | 31235256 | 31235001 | ID=Msa0018520-mRNA-1:exon:10307;Parent=Msa0018520-mRNA-1 |
| chr1_1 | CDS | 31233561 | 31233660 | 31233561 | ID=Msa0018520-mRNA-1:cds;Parent=Msa0018520-mRNA-1 |
| chr1_1 | CDS | 31233954 | 31234039 | 31233954 | ID=Msa0018520-mRNA-1:cds;Parent=Msa0018520-mRNA-1 |
| chr1_1 | CDS | 31234142 | 31234219 | 31234142 | ID=Msa0018520-mRNA-1:cds;Parent=Msa0018520-mRNA-1 |
| chr1_1 | CDS | 31234331 | 31234401 | 31234331 | ID=Msa0018520-mRNA-1:cds;Parent=Msa0018520-mRNA-1 |
| chr1_1 | CDS | 31235001 | 31235256 | 31235001 | ID=Msa0018520-mRNA-1:cds;Parent=Msa0018520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
