Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018680 | KEH41328.1 | 86.066 | 244 | 34 | 0 | 1 | 244 | 1 | 244 | 4.28e-152 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018680 | sp|Q9M1K1|ORG2_ARATH | 40.239 | 251 | 135 | 6 | 1 | 240 | 1 | 247 | 6.13e-51 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0018680 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018680 | MtrunA17_Chr1g0170581 | 85.656 | 244 | 35 | 0 | 1 | 244 | 1 | 244 | 2.08e-155 | 431 |
| Msa0018680 | MtrunA17_Chr1g0170591 | 86.475 | 244 | 25 | 1 | 1 | 244 | 1 | 236 | 1.22e-152 | 424 |
| Msa0018680 | MtrunA17_Chr1g0170571 | 82.520 | 246 | 35 | 1 | 1 | 246 | 1 | 238 | 8.84e-142 | 397 |
| Msa0018680 | MtrunA17_Chr7g0256671 | 56.175 | 251 | 91 | 6 | 1 | 241 | 1 | 242 | 4.83e-64 | 200 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018680 | AT3G56970.1 | 40.239 | 251 | 135 | 6 | 1 | 240 | 1 | 247 | 6.23e-52 | 169 |
| Msa0018680 | AT3G56980.1 | 39.560 | 273 | 115 | 6 | 1 | 242 | 1 | 254 | 6.75e-45 | 151 |
| Msa0018680 | AT2G41240.1 | 36.842 | 247 | 142 | 4 | 1 | 242 | 1 | 238 | 1.19e-41 | 142 |
| Msa0018680 | AT2G41240.2 | 36.437 | 247 | 142 | 5 | 1 | 242 | 1 | 237 | 3.80e-39 | 136 |
| Msa0018680 | AT5G04150.2 | 45.283 | 159 | 85 | 1 | 61 | 219 | 82 | 238 | 3.80e-35 | 125 |
| Msa0018680 | AT5G04150.1 | 44.068 | 177 | 94 | 3 | 65 | 239 | 86 | 259 | 8.64e-35 | 125 |
Find 39 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACATGTTTATGTATTTC+TGG | 0.098207 | 1_1:-31643708 | None:intergenic |
| TGATGCTGGTTATGGCTTAT+TGG | 0.196697 | 1_1:-31643207 | None:intergenic |
| AGTACCATTTGATCAGAAAT+AGG | 0.267145 | 1_1:-31643426 | None:intergenic |
| CAACTTCTCGTTTAAAATAT+CGG | 0.270225 | 1_1:-31644137 | None:intergenic |
| CGAGAAGTTGTTATCAATAA+TGG | 0.272808 | 1_1:+31644150 | Msa0018680:CDS |
| GTTTCTTCATCTCAAACCTT+TGG | 0.309294 | 1_1:+31643969 | Msa0018680:CDS |
| ATGGATTCTGATGCTGGTTA+TGG | 0.357369 | 1_1:-31643215 | None:intergenic |
| CATAGCAAAATCTCAGATAA+TGG | 0.357726 | 1_1:-31643915 | None:intergenic |
| AGGACTCTTGAAATTGTTGC+TGG | 0.367920 | 1_1:-31643675 | None:intergenic |
| TCAATAGTGTCTTTGTAGAA+TGG | 0.399191 | 1_1:-31643234 | None:intergenic |
| TCTTCCTATTTCTGATCAAA+TGG | 0.404052 | 1_1:+31643422 | Msa0018680:CDS |
| AACAATTGGATGGGCCTTTG+AGG | 0.425119 | 1_1:+31643182 | Msa0018680:CDS |
| TCTTCATCTCAAACCTTTGG+AGG | 0.450222 | 1_1:+31643972 | Msa0018680:CDS |
| TGTAGAATGGATTCTGATGC+TGG | 0.456368 | 1_1:-31643221 | None:intergenic |
| GTTGTTATCAATAATGGAAA+AGG | 0.460271 | 1_1:+31644156 | Msa0018680:CDS |
| AAGAAACATTTAGCAACATA+AGG | 0.460296 | 1_1:-31643953 | None:intergenic |
| TTGCTATGTTTAGAAAATGA+TGG | 0.461428 | 1_1:+31643930 | Msa0018680:CDS |
| ATCTCAAACCTTTGGAGGGA+GGG | 0.471487 | 1_1:+31643977 | Msa0018680:CDS |
| ATAATAACTTCATTTACTTG+TGG | 0.512712 | 1_1:-31643774 | None:intergenic |
| AAGAAACATAATTACAACTC+TGG | 0.515926 | 1_1:+31643816 | Msa0018680:CDS |
| ACAAATTATTCATCTTCTTG+CGG | 0.523820 | 1_1:-31643380 | None:intergenic |
| CTTCATCTCAAACCTTTGGA+GGG | 0.524238 | 1_1:+31643973 | Msa0018680:CDS |
| ATGGCTTATTGGCTCCTCAA+AGG | 0.528875 | 1_1:-31643196 | None:intergenic |
| CATGCAAAGGTCACTGCTTG+TGG | 0.541878 | 1_1:-31643319 | None:intergenic |
| CAATAATGGAAAAGGAAGGA+GGG | 0.549179 | 1_1:+31644164 | Msa0018680:CDS |
| CATCTCAAACCTTTGGAGGG+AGG | 0.551061 | 1_1:+31643976 | Msa0018680:CDS |
| TCAATAATGGAAAAGGAAGG+AGG | 0.551798 | 1_1:+31644163 | Msa0018680:CDS |
| CATCCAATTGTTGAAAACAT+AGG | 0.558093 | 1_1:-31643171 | None:intergenic |
| GTAGAAGACCCTCCCTCCAA+AGG | 0.574235 | 1_1:-31643985 | None:intergenic |
| CCAATTGTTGAAAACATAGG+AGG | 0.582074 | 1_1:-31643168 | None:intergenic |
| CACAAGCAGTGACCTTTGCA+TGG | 0.598738 | 1_1:+31643320 | Msa0018680:CDS |
| GAAATACATAAACATGTGGA+AGG | 0.601655 | 1_1:+31643711 | Msa0018680:CDS |
| TCTCAGATAATGGAATCTTG+TGG | 0.603687 | 1_1:-31643905 | None:intergenic |
| TTATCAATAATGGAAAAGGA+AGG | 0.604075 | 1_1:+31644160 | Msa0018680:CDS |
| CAGAAATAGGAAGAAGTGAA+CGG | 0.605298 | 1_1:-31643413 | None:intergenic |
| GTCACTGCTTGTGGATTGTG+AGG | 0.612584 | 1_1:-31643310 | None:intergenic |
| ACCAGAAATACATAAACATG+TGG | 0.627789 | 1_1:+31643707 | Msa0018680:CDS |
| CAAGCTTCTTGACCATGCAA+AGG | 0.654337 | 1_1:-31643332 | None:intergenic |
| TCACTGCTTGTGGATTGTGA+GGG | 0.698792 | 1_1:-31643309 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAACTTCATTTACTTG+TGG | - | chr1_1:31643777-31643796 | None:intergenic | 20.0% |
| !!! | AATTAATTAAAAGCTCCTTT+TGG | + | chr1_1:31644078-31644097 | Msa0018680:intron | 20.0% |
| !!! | ATTAATTAAAAGCTCCTTTT+GGG | + | chr1_1:31644079-31644098 | Msa0018680:intron | 20.0% |
| !! | ATAATAACTTCATTTACTTG+TGG | - | chr1_1:31643777-31643796 | None:intergenic | 20.0% |
| !!! | AATTAATTAAAAGCTCCTTT+TGG | + | chr1_1:31644078-31644097 | Msa0018680:intron | 20.0% |
| !!! | ATTAATTAAAAGCTCCTTTT+GGG | + | chr1_1:31644079-31644098 | Msa0018680:intron | 20.0% |
| !! | TATGTTTTCAACAATTGGAT+GGG | + | chr1_1:31643173-31643192 | Msa0018680:CDS | 25.0% |
| ! | ACAAATTATTCATCTTCTTG+CGG | - | chr1_1:31643383-31643402 | None:intergenic | 25.0% |
| ! | ACAATTAGAAACAGAAAGAA+GGG | - | chr1_1:31643460-31643479 | None:intergenic | 25.0% |
| !! | TCTAAAGTGATATCGAAAAA+CGG | - | chr1_1:31643576-31643595 | None:intergenic | 25.0% |
| !!! | GTATTTCTGGTATGTATTTT+AGG | - | chr1_1:31643698-31643717 | None:intergenic | 25.0% |
| ! | AAGAAACATAATTACAACTC+TGG | + | chr1_1:31643816-31643835 | Msa0018680:CDS | 25.0% |
| ! | TTGCTATGTTTAGAAAATGA+TGG | + | chr1_1:31643930-31643949 | Msa0018680:CDS | 25.0% |
| ! | AAGAAACATTTAGCAACATA+AGG | - | chr1_1:31643956-31643975 | None:intergenic | 25.0% |
| !! | TTTTCACAATGTGTAAATTC+AGG | + | chr1_1:31644051-31644070 | Msa0018680:intron | 25.0% |
| !! | CAACTTCTCGTTTAAAATAT+CGG | - | chr1_1:31644140-31644159 | None:intergenic | 25.0% |
| !! | GTTGTTATCAATAATGGAAA+AGG | + | chr1_1:31644156-31644175 | Msa0018680:CDS | 25.0% |
| !! | TTATCAATAATGGAAAAGGA+AGG | + | chr1_1:31644160-31644179 | Msa0018680:CDS | 25.0% |
| !! | TATGTTTTCAACAATTGGAT+GGG | + | chr1_1:31643173-31643192 | Msa0018680:CDS | 25.0% |
| ! | ACAAATTATTCATCTTCTTG+CGG | - | chr1_1:31643383-31643402 | None:intergenic | 25.0% |
| ! | ACAATTAGAAACAGAAAGAA+GGG | - | chr1_1:31643460-31643479 | None:intergenic | 25.0% |
| !! | TCTAAAGTGATATCGAAAAA+CGG | - | chr1_1:31643576-31643595 | None:intergenic | 25.0% |
| !!! | GTATTTCTGGTATGTATTTT+AGG | - | chr1_1:31643698-31643717 | None:intergenic | 25.0% |
| ! | AAGAAACATAATTACAACTC+TGG | + | chr1_1:31643816-31643835 | Msa0018680:CDS | 25.0% |
| ! | TTGCTATGTTTAGAAAATGA+TGG | + | chr1_1:31643930-31643949 | Msa0018680:CDS | 25.0% |
| ! | AAGAAACATTTAGCAACATA+AGG | - | chr1_1:31643956-31643975 | None:intergenic | 25.0% |
| !! | TTTTCACAATGTGTAAATTC+AGG | + | chr1_1:31644051-31644070 | Msa0018680:intron | 25.0% |
| !! | CAACTTCTCGTTTAAAATAT+CGG | - | chr1_1:31644140-31644159 | None:intergenic | 25.0% |
| !! | GTTGTTATCAATAATGGAAA+AGG | + | chr1_1:31644156-31644175 | Msa0018680:CDS | 25.0% |
| !! | TTATCAATAATGGAAAAGGA+AGG | + | chr1_1:31644160-31644179 | Msa0018680:CDS | 25.0% |
| CATCCAATTGTTGAAAACAT+AGG | - | chr1_1:31643174-31643193 | None:intergenic | 30.0% | |
| ! | CTATGTTTTCAACAATTGGA+TGG | + | chr1_1:31643172-31643191 | Msa0018680:CDS | 30.0% |
| TCAATAGTGTCTTTGTAGAA+TGG | - | chr1_1:31643237-31643256 | None:intergenic | 30.0% | |
| !! | TCATTTTGATGATCAAGTAG+AGG | + | chr1_1:31643266-31643285 | Msa0018680:CDS | 30.0% |
| !! | TCTTCCTATTTCTGATCAAA+TGG | + | chr1_1:31643422-31643441 | Msa0018680:CDS | 30.0% |
| AGTACCATTTGATCAGAAAT+AGG | - | chr1_1:31643429-31643448 | None:intergenic | 30.0% | |
| GACAATTAGAAACAGAAAGA+AGG | - | chr1_1:31643461-31643480 | None:intergenic | 30.0% | |
| !!! | GTTTTGTTTTGACATGAGTA+TGG | + | chr1_1:31643528-31643547 | Msa0018680:intron | 30.0% |
| TATGGTTGGAATTTCCTAAT+AGG | + | chr1_1:31643546-31643565 | Msa0018680:intron | 30.0% | |
| ATGGTTGGAATTTCCTAATA+GGG | + | chr1_1:31643547-31643566 | Msa0018680:intron | 30.0% | |
| TTCGATATCACTTTAGATTG+TGG | + | chr1_1:31643579-31643598 | Msa0018680:intron | 30.0% | |
| ACCAGAAATACATAAACATG+TGG | + | chr1_1:31643707-31643726 | Msa0018680:CDS | 30.0% | |
| TCCACATGTTTATGTATTTC+TGG | - | chr1_1:31643711-31643730 | None:intergenic | 30.0% | |
| GAAATACATAAACATGTGGA+AGG | + | chr1_1:31643711-31643730 | Msa0018680:CDS | 30.0% | |
| ! | GTTTTATCGTTTCAACAAGT+AGG | + | chr1_1:31643838-31643857 | Msa0018680:CDS | 30.0% |
| CATAGCAAAATCTCAGATAA+TGG | - | chr1_1:31643918-31643937 | None:intergenic | 30.0% | |
| ! | CTTCTACAATTTGCATTTTC+AGG | + | chr1_1:31644001-31644020 | Msa0018680:CDS | 30.0% |
| CGAGAAGTTGTTATCAATAA+TGG | + | chr1_1:31644150-31644169 | Msa0018680:CDS | 30.0% | |
| CATCCAATTGTTGAAAACAT+AGG | - | chr1_1:31643174-31643193 | None:intergenic | 30.0% | |
| ! | CTATGTTTTCAACAATTGGA+TGG | + | chr1_1:31643172-31643191 | Msa0018680:CDS | 30.0% |
| TCAATAGTGTCTTTGTAGAA+TGG | - | chr1_1:31643237-31643256 | None:intergenic | 30.0% | |
| !! | TCATTTTGATGATCAAGTAG+AGG | + | chr1_1:31643266-31643285 | Msa0018680:CDS | 30.0% |
| !! | TCTTCCTATTTCTGATCAAA+TGG | + | chr1_1:31643422-31643441 | Msa0018680:CDS | 30.0% |
| AGTACCATTTGATCAGAAAT+AGG | - | chr1_1:31643429-31643448 | None:intergenic | 30.0% | |
| GACAATTAGAAACAGAAAGA+AGG | - | chr1_1:31643461-31643480 | None:intergenic | 30.0% | |
| !!! | GTTTTGTTTTGACATGAGTA+TGG | + | chr1_1:31643528-31643547 | Msa0018680:intron | 30.0% |
| TATGGTTGGAATTTCCTAAT+AGG | + | chr1_1:31643546-31643565 | Msa0018680:intron | 30.0% | |
| ATGGTTGGAATTTCCTAATA+GGG | + | chr1_1:31643547-31643566 | Msa0018680:intron | 30.0% | |
| TTCGATATCACTTTAGATTG+TGG | + | chr1_1:31643579-31643598 | Msa0018680:intron | 30.0% | |
| ACCAGAAATACATAAACATG+TGG | + | chr1_1:31643707-31643726 | Msa0018680:CDS | 30.0% | |
| TCCACATGTTTATGTATTTC+TGG | - | chr1_1:31643711-31643730 | None:intergenic | 30.0% | |
| GAAATACATAAACATGTGGA+AGG | + | chr1_1:31643711-31643730 | Msa0018680:CDS | 30.0% | |
| ! | GTTTTATCGTTTCAACAAGT+AGG | + | chr1_1:31643838-31643857 | Msa0018680:CDS | 30.0% |
| CATAGCAAAATCTCAGATAA+TGG | - | chr1_1:31643918-31643937 | None:intergenic | 30.0% | |
| ! | CTTCTACAATTTGCATTTTC+AGG | + | chr1_1:31644001-31644020 | Msa0018680:CDS | 30.0% |
| CGAGAAGTTGTTATCAATAA+TGG | + | chr1_1:31644150-31644169 | Msa0018680:CDS | 30.0% | |
| CCAATTGTTGAAAACATAGG+AGG | - | chr1_1:31643171-31643190 | None:intergenic | 35.0% | |
| ! | CCTCCTATGTTTTCAACAAT+TGG | + | chr1_1:31643168-31643187 | Msa0018680:CDS | 35.0% |
| CAGAAATAGGAAGAAGTGAA+CGG | - | chr1_1:31643416-31643435 | None:intergenic | 35.0% | |
| !!! | TGTTTTGACATGAGTATGGT+TGG | + | chr1_1:31643532-31643551 | Msa0018680:intron | 35.0% |
| !! | TCTCAGATAATGGAATCTTG+TGG | - | chr1_1:31643908-31643927 | None:intergenic | 35.0% |
| GTTTCTTCATCTCAAACCTT+TGG | + | chr1_1:31643969-31643988 | Msa0018680:CDS | 35.0% | |
| ! | TCAATAATGGAAAAGGAAGG+AGG | + | chr1_1:31644163-31644182 | Msa0018680:CDS | 35.0% |
| ! | CAATAATGGAAAAGGAAGGA+GGG | + | chr1_1:31644164-31644183 | Msa0018680:CDS | 35.0% |
| CCAATTGTTGAAAACATAGG+AGG | - | chr1_1:31643171-31643190 | None:intergenic | 35.0% | |
| ! | CCTCCTATGTTTTCAACAAT+TGG | + | chr1_1:31643168-31643187 | Msa0018680:CDS | 35.0% |
| CAGAAATAGGAAGAAGTGAA+CGG | - | chr1_1:31643416-31643435 | None:intergenic | 35.0% | |
| !!! | TGTTTTGACATGAGTATGGT+TGG | + | chr1_1:31643532-31643551 | Msa0018680:intron | 35.0% |
| !! | TCTCAGATAATGGAATCTTG+TGG | - | chr1_1:31643908-31643927 | None:intergenic | 35.0% |
| GTTTCTTCATCTCAAACCTT+TGG | + | chr1_1:31643969-31643988 | Msa0018680:CDS | 35.0% | |
| ! | TCAATAATGGAAAAGGAAGG+AGG | + | chr1_1:31644163-31644182 | Msa0018680:CDS | 35.0% |
| ! | CAATAATGGAAAAGGAAGGA+GGG | + | chr1_1:31644164-31644183 | Msa0018680:CDS | 35.0% |
| ! | TGATGCTGGTTATGGCTTAT+TGG | - | chr1_1:31643210-31643229 | None:intergenic | 40.0% |
| ! | ATGGATTCTGATGCTGGTTA+TGG | - | chr1_1:31643218-31643237 | None:intergenic | 40.0% |
| ! | TGTAGAATGGATTCTGATGC+TGG | - | chr1_1:31643224-31643243 | None:intergenic | 40.0% |
| AGGACTCTTGAAATTGTTGC+TGG | - | chr1_1:31643678-31643697 | None:intergenic | 40.0% | |
| TCTTCATCTCAAACCTTTGG+AGG | + | chr1_1:31643972-31643991 | Msa0018680:CDS | 40.0% | |
| CTTCATCTCAAACCTTTGGA+GGG | + | chr1_1:31643973-31643992 | Msa0018680:CDS | 40.0% | |
| ! | TGATGCTGGTTATGGCTTAT+TGG | - | chr1_1:31643210-31643229 | None:intergenic | 40.0% |
| ! | ATGGATTCTGATGCTGGTTA+TGG | - | chr1_1:31643218-31643237 | None:intergenic | 40.0% |
| ! | TGTAGAATGGATTCTGATGC+TGG | - | chr1_1:31643224-31643243 | None:intergenic | 40.0% |
| AGGACTCTTGAAATTGTTGC+TGG | - | chr1_1:31643678-31643697 | None:intergenic | 40.0% | |
| TCTTCATCTCAAACCTTTGG+AGG | + | chr1_1:31643972-31643991 | Msa0018680:CDS | 40.0% | |
| CTTCATCTCAAACCTTTGGA+GGG | + | chr1_1:31643973-31643992 | Msa0018680:CDS | 40.0% | |
| AACAATTGGATGGGCCTTTG+AGG | + | chr1_1:31643182-31643201 | Msa0018680:CDS | 45.0% | |
| !! | ATGGCTTATTGGCTCCTCAA+AGG | - | chr1_1:31643199-31643218 | None:intergenic | 45.0% |
| ! | TCACTGCTTGTGGATTGTGA+GGG | - | chr1_1:31643312-31643331 | None:intergenic | 45.0% |
| CAAGCTTCTTGACCATGCAA+AGG | - | chr1_1:31643335-31643354 | None:intergenic | 45.0% | |
| CGAAAAACGGCATCCCTATT+AGG | - | chr1_1:31643563-31643582 | None:intergenic | 45.0% | |
| ! | ATCTCAAACCTTTGGAGGGA+GGG | + | chr1_1:31643977-31643996 | Msa0018680:CDS | 45.0% |
| AACAATTGGATGGGCCTTTG+AGG | + | chr1_1:31643182-31643201 | Msa0018680:CDS | 45.0% | |
| !! | ATGGCTTATTGGCTCCTCAA+AGG | - | chr1_1:31643199-31643218 | None:intergenic | 45.0% |
| ! | TCACTGCTTGTGGATTGTGA+GGG | - | chr1_1:31643312-31643331 | None:intergenic | 45.0% |
| CAAGCTTCTTGACCATGCAA+AGG | - | chr1_1:31643335-31643354 | None:intergenic | 45.0% | |
| CGAAAAACGGCATCCCTATT+AGG | - | chr1_1:31643563-31643582 | None:intergenic | 45.0% | |
| ! | ATCTCAAACCTTTGGAGGGA+GGG | + | chr1_1:31643977-31643996 | Msa0018680:CDS | 45.0% |
| ! | GTCACTGCTTGTGGATTGTG+AGG | - | chr1_1:31643313-31643332 | None:intergenic | 50.0% |
| CATGCAAAGGTCACTGCTTG+TGG | - | chr1_1:31643322-31643341 | None:intergenic | 50.0% | |
| CACAAGCAGTGACCTTTGCA+TGG | + | chr1_1:31643320-31643339 | Msa0018680:CDS | 50.0% | |
| ! | CATCTCAAACCTTTGGAGGG+AGG | + | chr1_1:31643976-31643995 | Msa0018680:CDS | 50.0% |
| !!! | GCTCCTTTTGGGTTTTCTGC+AGG | + | chr1_1:31644090-31644109 | Msa0018680:intron | 50.0% |
| CCACCTGCAGAAAACCCAAA+AGG | - | chr1_1:31644096-31644115 | None:intergenic | 50.0% | |
| !!! | CCTTTTGGGTTTTCTGCAGG+TGG | + | chr1_1:31644093-31644112 | Msa0018680:intron | 50.0% |
| ! | GTCACTGCTTGTGGATTGTG+AGG | - | chr1_1:31643313-31643332 | None:intergenic | 50.0% |
| CATGCAAAGGTCACTGCTTG+TGG | - | chr1_1:31643322-31643341 | None:intergenic | 50.0% | |
| CACAAGCAGTGACCTTTGCA+TGG | + | chr1_1:31643320-31643339 | Msa0018680:CDS | 50.0% | |
| ! | CATCTCAAACCTTTGGAGGG+AGG | + | chr1_1:31643976-31643995 | Msa0018680:CDS | 50.0% |
| !!! | GCTCCTTTTGGGTTTTCTGC+AGG | + | chr1_1:31644090-31644109 | Msa0018680:intron | 50.0% |
| CCACCTGCAGAAAACCCAAA+AGG | - | chr1_1:31644096-31644115 | None:intergenic | 50.0% | |
| !!! | CCTTTTGGGTTTTCTGCAGG+TGG | + | chr1_1:31644093-31644112 | Msa0018680:intron | 50.0% |
| GTAGAAGACCCTCCCTCCAA+AGG | - | chr1_1:31643988-31644007 | None:intergenic | 55.0% | |
| GTAGAAGACCCTCCCTCCAA+AGG | - | chr1_1:31643988-31644007 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 31643153 | 31644201 | 31643153 | ID=Msa0018680;Name=Msa0018680 |
| chr1_1 | mRNA | 31643153 | 31644201 | 31643153 | ID=Msa0018680-mRNA-1;Parent=Msa0018680;Name=Msa0018680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|247 |
| chr1_1 | exon | 31643153 | 31643443 | 31643153 | ID=Msa0018680-mRNA-1:exon:10381;Parent=Msa0018680-mRNA-1 |
| chr1_1 | exon | 31643660 | 31644022 | 31643660 | ID=Msa0018680-mRNA-1:exon:10382;Parent=Msa0018680-mRNA-1 |
| chr1_1 | exon | 31644112 | 31644201 | 31644112 | ID=Msa0018680-mRNA-1:exon:10383;Parent=Msa0018680-mRNA-1 |
| chr1_1 | CDS | 31643153 | 31643443 | 31643153 | ID=Msa0018680-mRNA-1:cds;Parent=Msa0018680-mRNA-1 |
| chr1_1 | CDS | 31643660 | 31644022 | 31643660 | ID=Msa0018680-mRNA-1:cds;Parent=Msa0018680-mRNA-1 |
| chr1_1 | CDS | 31644112 | 31644201 | 31644112 | ID=Msa0018680-mRNA-1:cds;Parent=Msa0018680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
