Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018700 | KEH41328.1 | 91.935 | 248 | 19 | 1 | 1 | 248 | 1 | 247 | 1.20e-163 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018700 | sp|Q9M1K1|ORG2_ARATH | 41.634 | 257 | 124 | 6 | 1 | 241 | 1 | 247 | 3.57e-54 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0018700 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018700 | MtrunA17_Chr1g0170581 | 91.532 | 248 | 20 | 1 | 1 | 248 | 1 | 247 | 6.83e-167 | 461 |
| Msa0018700 | MtrunA17_Chr1g0170591 | 83.673 | 245 | 31 | 2 | 1 | 245 | 1 | 236 | 1.30e-148 | 414 |
| Msa0018700 | MtrunA17_Chr1g0170571 | 87.755 | 245 | 21 | 2 | 1 | 245 | 1 | 236 | 9.44e-147 | 409 |
| Msa0018700 | MtrunA17_Chr7g0256671 | 59.524 | 252 | 82 | 8 | 1 | 242 | 1 | 242 | 3.32e-66 | 206 |
| Msa0018700 | MtrunA17_Chr6g0474681 | 32.468 | 154 | 92 | 5 | 65 | 215 | 6 | 150 | 6.61e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018700 | AT3G56970.1 | 41.634 | 257 | 124 | 6 | 1 | 241 | 1 | 247 | 3.63e-55 | 177 |
| Msa0018700 | AT2G41240.1 | 38.340 | 253 | 131 | 5 | 1 | 243 | 1 | 238 | 3.75e-45 | 152 |
| Msa0018700 | AT3G56980.1 | 40.927 | 259 | 132 | 6 | 1 | 243 | 1 | 254 | 1.50e-43 | 148 |
| Msa0018700 | AT2G41240.2 | 37.945 | 253 | 131 | 6 | 1 | 243 | 1 | 237 | 1.16e-42 | 145 |
| Msa0018700 | AT5G04150.2 | 45.062 | 162 | 84 | 2 | 60 | 218 | 78 | 237 | 1.26e-35 | 127 |
| Msa0018700 | AT5G04150.1 | 43.716 | 183 | 96 | 4 | 60 | 238 | 78 | 257 | 1.82e-35 | 127 |
Find 44 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACCTGTTTCTGTAATTC+TGG | 0.207133 | 1_1:-31680942 | None:intergenic |
| TGATGCTGGTTATGGGTTAT+TGG | 0.230970 | 1_1:-31680560 | None:intergenic |
| CTTCTATAATTTGCATTTCC+AGG | 0.265122 | 1_1:+31681235 | Msa0018700:CDS |
| TTCTGAGATCTTGATATGTT+TGG | 0.287728 | 1_1:+31681154 | Msa0018700:CDS |
| TGAAAAGCTCTTATCAATAA+TGG | 0.319674 | 1_1:+31682378 | Msa0018700:CDS |
| CTTTCTTCATCTCAGACCTT+TGG | 0.339976 | 1_1:+31681203 | Msa0018700:CDS |
| ATGAACTCTGATGCTGGTTA+TGG | 0.359283 | 1_1:-31680568 | None:intergenic |
| AGGACTCTTGAAATTGTTGC+TGG | 0.367920 | 1_1:-31680909 | None:intergenic |
| GATCGCGTTCACTAGCATTA+TGG | 0.375108 | 1_1:-31680709 | None:intergenic |
| TCTTCATCTCAGACCTTTGG+AGG | 0.399010 | 1_1:+31681206 | Msa0018700:CDS |
| GTAACCATTTGATCTGAAAC+AGG | 0.410609 | 1_1:-31680779 | None:intergenic |
| CATACCAGAATTACAGAAAC+AGG | 0.417584 | 1_1:+31680938 | Msa0018700:CDS |
| TCTTCCTGTTTCAGATCAAA+TGG | 0.432892 | 1_1:+31680775 | Msa0018700:CDS |
| ATGGGTTATTGGCTCCTCAA+AGG | 0.463079 | 1_1:-31680549 | None:intergenic |
| AACAATTGGATGGCCCTTTG+AGG | 0.464251 | 1_1:+31680535 | Msa0018700:CDS |
| TGAACTCTGATGCTGGTTAT+GGG | 0.477659 | 1_1:-31680567 | None:intergenic |
| TGGGTTATTGGCTCCTCAAA+GGG | 0.488564 | 1_1:-31680548 | None:intergenic |
| CATATCAAGATCTCAGAAAG+TGG | 0.493296 | 1_1:-31681149 | None:intergenic |
| CCATCCAATTGTTGAAAACA+TGG | 0.496261 | 1_1:-31680525 | None:intergenic |
| CATGCCAAGGTCACTGCTTG+TGG | 0.499479 | 1_1:-31680672 | None:intergenic |
| AAGAAAGATTAAGAAGCAAA+AGG | 0.505181 | 1_1:-31681187 | None:intergenic |
| ATCAATAATGGAGAAGGAAG+GGG | 0.526977 | 1_1:+31682390 | Msa0018700:CDS |
| ACAAATTATTGATCTTCTTG+CGG | 0.529574 | 1_1:-31680733 | None:intergenic |
| TTGATATGTTTGGAAAATGA+TGG | 0.537710 | 1_1:+31681164 | Msa0018700:CDS |
| GCTCTTATCAATAATGGAGA+AGG | 0.545227 | 1_1:+31682384 | Msa0018700:CDS |
| AAGAAACATAGTTACAACTC+TGG | 0.547575 | 1_1:+31681050 | Msa0018700:CDS |
| CTTCATCTCAGACCTTTGGA+GGG | 0.548412 | 1_1:+31681207 | Msa0018700:CDS |
| TATCAATAATGGAGAAGGAA+GGG | 0.552099 | 1_1:+31682389 | Msa0018700:CDS |
| TGTAGAATGAACTCTGATGC+TGG | 0.560692 | 1_1:-31680574 | None:intergenic |
| TTATCAATAATGGAGAAGGA+AGG | 0.562276 | 1_1:+31682388 | Msa0018700:CDS |
| ATGATCACCTCATCTACTTG+TGG | 0.565875 | 1_1:-31681008 | None:intergenic |
| TCTCAGAAAGTGGAATCTTG+TGG | 0.569417 | 1_1:-31681139 | None:intergenic |
| CAATCCACAAGCAGTGACCT+TGG | 0.569748 | 1_1:+31680668 | Msa0018700:CDS |
| AGTGTAACATGATATCTGAA+TGG | 0.570967 | 1_1:-31681114 | None:intergenic |
| GAATTACAGAAACAGGTTGA+AGG | 0.587853 | 1_1:+31680945 | Msa0018700:CDS |
| GTCACTGCTTGTGGATTGTG+AGG | 0.591686 | 1_1:-31680663 | None:intergenic |
| ATAGAAGACTCTCCCTCCAA+AGG | 0.594272 | 1_1:-31681219 | None:intergenic |
| CACAAGCAGTGACCTTGGCA+TGG | 0.602895 | 1_1:+31680673 | Msa0018700:CDS |
| TCATGAACAAAGAATCTCAA+AGG | 0.621931 | 1_1:+31681027 | Msa0018700:CDS |
| CATCCAATTGTTGAAAACAT+GGG | 0.623866 | 1_1:-31680524 | None:intergenic |
| ACTTTCTCCACAAGTAGATG+AGG | 0.642125 | 1_1:+31681001 | Msa0018700:CDS |
| CAAGCTTCTTAACCATGCCA+AGG | 0.655760 | 1_1:-31680685 | None:intergenic |
| CCAATTGTTGAAAACATGGG+AGG | 0.674806 | 1_1:-31680521 | None:intergenic |
| TCACTGCTTGTGGATTGTGA+GGG | 0.698792 | 1_1:-31680662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAAAAAAAAAGAAATTA+TGG | + | chr1_1:31682172-31682191 | Msa0018700:intron | 10.0% |
| !! | AACTAAAAAAAAAGAAATTA+TGG | + | chr1_1:31682172-31682191 | Msa0018700:intron | 10.0% |
| !! | ATTAACAAAATCATAAAGAA+GGG | - | chr1_1:31680814-31680833 | None:intergenic | 15.0% |
| !! | AATTAACAAAATCATAAAGA+AGG | - | chr1_1:31680815-31680834 | None:intergenic | 15.0% |
| !! | GATCATATATAATTATGATT+TGG | + | chr1_1:31681404-31681423 | Msa0018700:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr1_1:31681957-31681976 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr1_1:31681735-31681754 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr1_1:31681867-31681886 | Msa0018700:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr1_1:31681956-31681975 | Msa0018700:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr1_1:31681957-31681976 | Msa0018700:intron | 15.0% |
| !! | TAACATTTGTGAAAATAATT+GGG | - | chr1_1:31682031-31682050 | None:intergenic | 15.0% |
| !! | TTAACATTTGTGAAAATAAT+TGG | - | chr1_1:31682032-31682051 | None:intergenic | 15.0% |
| !! | ATACAAAATAATTGATTACT+TGG | + | chr1_1:31682208-31682227 | Msa0018700:intron | 15.0% |
| !! | TACAAAATAATTGATTACTT+GGG | + | chr1_1:31682209-31682228 | Msa0018700:intron | 15.0% |
| !! | ATTAACAAAATCATAAAGAA+GGG | - | chr1_1:31680814-31680833 | None:intergenic | 15.0% |
| !! | AATTAACAAAATCATAAAGA+AGG | - | chr1_1:31680815-31680834 | None:intergenic | 15.0% |
| !! | GATCATATATAATTATGATT+TGG | + | chr1_1:31681404-31681423 | Msa0018700:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr1_1:31681957-31681976 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr1_1:31681735-31681754 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr1_1:31681867-31681886 | Msa0018700:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr1_1:31681956-31681975 | Msa0018700:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr1_1:31681957-31681976 | Msa0018700:intron | 15.0% |
| !! | TAACATTTGTGAAAATAATT+GGG | - | chr1_1:31682031-31682050 | None:intergenic | 15.0% |
| !! | TTAACATTTGTGAAAATAAT+TGG | - | chr1_1:31682032-31682051 | None:intergenic | 15.0% |
| !! | ATACAAAATAATTGATTACT+TGG | + | chr1_1:31682208-31682227 | Msa0018700:intron | 15.0% |
| !! | TACAAAATAATTGATTACTT+GGG | + | chr1_1:31682209-31682228 | Msa0018700:intron | 15.0% |
| !! | ATATTTCGTCATTTATGAAT+TGG | + | chr1_1:31681292-31681311 | Msa0018700:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr1_1:31681605-31681624 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr1_1:31681606-31681625 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr1_1:31681700-31681719 | None:intergenic | 20.0% |
| !!! | TAATCAAATTTTGTTTTAGC+AGG | + | chr1_1:31681895-31681914 | Msa0018700:intron | 20.0% |
| !!! | AATCAAATTTTGTTTTAGCA+GGG | + | chr1_1:31681896-31681915 | Msa0018700:intron | 20.0% |
| !! | TTAATAACATGTAAGAAGTA+AGG | + | chr1_1:31682149-31682168 | Msa0018700:intron | 20.0% |
| !! | ATATTTCGTCATTTATGAAT+TGG | + | chr1_1:31681292-31681311 | Msa0018700:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr1_1:31681605-31681624 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr1_1:31681606-31681625 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr1_1:31681700-31681719 | None:intergenic | 20.0% |
| !!! | TAATCAAATTTTGTTTTAGC+AGG | + | chr1_1:31681895-31681914 | Msa0018700:intron | 20.0% |
| !!! | AATCAAATTTTGTTTTAGCA+GGG | + | chr1_1:31681896-31681915 | Msa0018700:intron | 20.0% |
| !! | TTAATAACATGTAAGAAGTA+AGG | + | chr1_1:31682149-31682168 | Msa0018700:intron | 20.0% |
| !!! | TAATTTTCATGATCAAGTTG+AGG | + | chr1_1:31680619-31680638 | Msa0018700:CDS | 25.0% |
| ! | ACAAATTATTGATCTTCTTG+CGG | - | chr1_1:31680736-31680755 | None:intergenic | 25.0% |
| !! | GTAATTCTGGTATGTATTTT+AGG | - | chr1_1:31680932-31680951 | None:intergenic | 25.0% |
| ! | TTGATATGTTTGGAAAATGA+TGG | + | chr1_1:31681164-31681183 | Msa0018700:CDS | 25.0% |
| ! | AAGAAAGATTAAGAAGCAAA+AGG | - | chr1_1:31681190-31681209 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | chr1_1:31681572-31681591 | None:intergenic | 25.0% |
| !!! | TTACAAGATCGCTATTTTAT+AGG | + | chr1_1:31681987-31682006 | Msa0018700:intron | 25.0% |
| !!! | TACAAGATCGCTATTTTATA+GGG | + | chr1_1:31681988-31682007 | Msa0018700:intron | 25.0% |
| !!! | ACACAAAGAGCTTTTAATTA+AGG | - | chr1_1:31682311-31682330 | None:intergenic | 25.0% |
| ! | TGAAAAGCTCTTATCAATAA+TGG | + | chr1_1:31682378-31682397 | Msa0018700:CDS | 25.0% |
| !!! | TAATTTTCATGATCAAGTTG+AGG | + | chr1_1:31680619-31680638 | Msa0018700:CDS | 25.0% |
| ! | ACAAATTATTGATCTTCTTG+CGG | - | chr1_1:31680736-31680755 | None:intergenic | 25.0% |
| !! | GTAATTCTGGTATGTATTTT+AGG | - | chr1_1:31680932-31680951 | None:intergenic | 25.0% |
| ! | TTGATATGTTTGGAAAATGA+TGG | + | chr1_1:31681164-31681183 | Msa0018700:CDS | 25.0% |
| ! | AAGAAAGATTAAGAAGCAAA+AGG | - | chr1_1:31681190-31681209 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | chr1_1:31681572-31681591 | None:intergenic | 25.0% |
| !!! | TTACAAGATCGCTATTTTAT+AGG | + | chr1_1:31681987-31682006 | Msa0018700:intron | 25.0% |
| !!! | TACAAGATCGCTATTTTATA+GGG | + | chr1_1:31681988-31682007 | Msa0018700:intron | 25.0% |
| !!! | ACACAAAGAGCTTTTAATTA+AGG | - | chr1_1:31682311-31682330 | None:intergenic | 25.0% |
| ! | TGAAAAGCTCTTATCAATAA+TGG | + | chr1_1:31682378-31682397 | Msa0018700:CDS | 25.0% |
| CATCCAATTGTTGAAAACAT+GGG | - | chr1_1:31680527-31680546 | None:intergenic | 30.0% | |
| TCATGAACAAAGAATCTCAA+AGG | + | chr1_1:31681027-31681046 | Msa0018700:CDS | 30.0% | |
| AAGAAACATAGTTACAACTC+TGG | + | chr1_1:31681050-31681069 | Msa0018700:CDS | 30.0% | |
| ! | GTTTTGTAGTTTCAACAAGT+AGG | + | chr1_1:31681072-31681091 | Msa0018700:CDS | 30.0% |
| AGTGTAACATGATATCTGAA+TGG | - | chr1_1:31681117-31681136 | None:intergenic | 30.0% | |
| !! | TTCTGAGATCTTGATATGTT+TGG | + | chr1_1:31681154-31681173 | Msa0018700:CDS | 30.0% |
| ! | CTTCTATAATTTGCATTTCC+AGG | + | chr1_1:31681235-31681254 | Msa0018700:CDS | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr1_1:31681512-31681531 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr1_1:31681513-31681532 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | - | chr1_1:31681528-31681547 | None:intergenic | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | - | chr1_1:31681573-31681592 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr1_1:31681832-31681851 | None:intergenic | 30.0% | |
| AAGATGTAGAGTCATATAAG+AGG | + | chr1_1:31682270-31682289 | Msa0018700:intron | 30.0% | |
| ! | TTATCAATAATGGAGAAGGA+AGG | + | chr1_1:31682388-31682407 | Msa0018700:CDS | 30.0% |
| ! | TATCAATAATGGAGAAGGAA+GGG | + | chr1_1:31682389-31682408 | Msa0018700:CDS | 30.0% |
| CATCCAATTGTTGAAAACAT+GGG | - | chr1_1:31680527-31680546 | None:intergenic | 30.0% | |
| TCATGAACAAAGAATCTCAA+AGG | + | chr1_1:31681027-31681046 | Msa0018700:CDS | 30.0% | |
| AAGAAACATAGTTACAACTC+TGG | + | chr1_1:31681050-31681069 | Msa0018700:CDS | 30.0% | |
| ! | GTTTTGTAGTTTCAACAAGT+AGG | + | chr1_1:31681072-31681091 | Msa0018700:CDS | 30.0% |
| AGTGTAACATGATATCTGAA+TGG | - | chr1_1:31681117-31681136 | None:intergenic | 30.0% | |
| !! | TTCTGAGATCTTGATATGTT+TGG | + | chr1_1:31681154-31681173 | Msa0018700:CDS | 30.0% |
| ! | CTTCTATAATTTGCATTTCC+AGG | + | chr1_1:31681235-31681254 | Msa0018700:CDS | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr1_1:31681512-31681531 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr1_1:31681513-31681532 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | - | chr1_1:31681528-31681547 | None:intergenic | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | - | chr1_1:31681573-31681592 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr1_1:31681832-31681851 | None:intergenic | 30.0% | |
| AAGATGTAGAGTCATATAAG+AGG | + | chr1_1:31682270-31682289 | Msa0018700:intron | 30.0% | |
| ! | TTATCAATAATGGAGAAGGA+AGG | + | chr1_1:31682388-31682407 | Msa0018700:CDS | 30.0% |
| ! | TATCAATAATGGAGAAGGAA+GGG | + | chr1_1:31682389-31682408 | Msa0018700:CDS | 30.0% |
| CCATCCAATTGTTGAAAACA+TGG | - | chr1_1:31680528-31680547 | None:intergenic | 35.0% | |
| ! | CCATGTTTTCAACAATTGGA+TGG | + | chr1_1:31680525-31680544 | Msa0018700:CDS | 35.0% |
| TCTTCCTGTTTCAGATCAAA+TGG | + | chr1_1:31680775-31680794 | Msa0018700:CDS | 35.0% | |
| ! | GTAACCATTTGATCTGAAAC+AGG | - | chr1_1:31680782-31680801 | None:intergenic | 35.0% |
| CATACCAGAATTACAGAAAC+AGG | + | chr1_1:31680938-31680957 | Msa0018700:CDS | 35.0% | |
| !! | TCAACCTGTTTCTGTAATTC+TGG | - | chr1_1:31680945-31680964 | None:intergenic | 35.0% |
| ! | GAATTACAGAAACAGGTTGA+AGG | + | chr1_1:31680945-31680964 | Msa0018700:CDS | 35.0% |
| CATATCAAGATCTCAGAAAG+TGG | - | chr1_1:31681152-31681171 | None:intergenic | 35.0% | |
| CATAGTGAAATTAACACACC+TGG | - | chr1_1:31681256-31681275 | None:intergenic | 35.0% | |
| ! | GCTCTTATCAATAATGGAGA+AGG | + | chr1_1:31682384-31682403 | Msa0018700:CDS | 35.0% |
| ! | ATCAATAATGGAGAAGGAAG+GGG | + | chr1_1:31682390-31682409 | Msa0018700:CDS | 35.0% |
| CCATCCAATTGTTGAAAACA+TGG | - | chr1_1:31680528-31680547 | None:intergenic | 35.0% | |
| ! | CCATGTTTTCAACAATTGGA+TGG | + | chr1_1:31680525-31680544 | Msa0018700:CDS | 35.0% |
| TCTTCCTGTTTCAGATCAAA+TGG | + | chr1_1:31680775-31680794 | Msa0018700:CDS | 35.0% | |
| ! | GTAACCATTTGATCTGAAAC+AGG | - | chr1_1:31680782-31680801 | None:intergenic | 35.0% |
| CATACCAGAATTACAGAAAC+AGG | + | chr1_1:31680938-31680957 | Msa0018700:CDS | 35.0% | |
| !! | TCAACCTGTTTCTGTAATTC+TGG | - | chr1_1:31680945-31680964 | None:intergenic | 35.0% |
| ! | GAATTACAGAAACAGGTTGA+AGG | + | chr1_1:31680945-31680964 | Msa0018700:CDS | 35.0% |
| CATATCAAGATCTCAGAAAG+TGG | - | chr1_1:31681152-31681171 | None:intergenic | 35.0% | |
| CATAGTGAAATTAACACACC+TGG | - | chr1_1:31681256-31681275 | None:intergenic | 35.0% | |
| ! | GCTCTTATCAATAATGGAGA+AGG | + | chr1_1:31682384-31682403 | Msa0018700:CDS | 35.0% |
| ! | ATCAATAATGGAGAAGGAAG+GGG | + | chr1_1:31682390-31682409 | Msa0018700:CDS | 35.0% |
| CCAATTGTTGAAAACATGGG+AGG | - | chr1_1:31680524-31680543 | None:intergenic | 40.0% | |
| ! | CCTCCCATGTTTTCAACAAT+TGG | + | chr1_1:31680521-31680540 | Msa0018700:CDS | 40.0% |
| ! | TGATGCTGGTTATGGGTTAT+TGG | - | chr1_1:31680563-31680582 | None:intergenic | 40.0% |
| ! | TGAACTCTGATGCTGGTTAT+GGG | - | chr1_1:31680570-31680589 | None:intergenic | 40.0% |
| ! | ATGAACTCTGATGCTGGTTA+TGG | - | chr1_1:31680571-31680590 | None:intergenic | 40.0% |
| TGTAGAATGAACTCTGATGC+TGG | - | chr1_1:31680577-31680596 | None:intergenic | 40.0% | |
| AGGACTCTTGAAATTGTTGC+TGG | - | chr1_1:31680912-31680931 | None:intergenic | 40.0% | |
| ACTTTCTCCACAAGTAGATG+AGG | + | chr1_1:31681001-31681020 | Msa0018700:CDS | 40.0% | |
| ATGATCACCTCATCTACTTG+TGG | - | chr1_1:31681011-31681030 | None:intergenic | 40.0% | |
| TCTCAGAAAGTGGAATCTTG+TGG | - | chr1_1:31681142-31681161 | None:intergenic | 40.0% | |
| CTTTCTTCATCTCAGACCTT+TGG | + | chr1_1:31681203-31681222 | Msa0018700:CDS | 40.0% | |
| CTCTTTGTGTTTACAGCATG+TGG | + | chr1_1:31682321-31682340 | Msa0018700:intron | 40.0% | |
| CCAATTGTTGAAAACATGGG+AGG | - | chr1_1:31680524-31680543 | None:intergenic | 40.0% | |
| ! | CCTCCCATGTTTTCAACAAT+TGG | + | chr1_1:31680521-31680540 | Msa0018700:CDS | 40.0% |
| ! | TGATGCTGGTTATGGGTTAT+TGG | - | chr1_1:31680563-31680582 | None:intergenic | 40.0% |
| ! | TGAACTCTGATGCTGGTTAT+GGG | - | chr1_1:31680570-31680589 | None:intergenic | 40.0% |
| ! | ATGAACTCTGATGCTGGTTA+TGG | - | chr1_1:31680571-31680590 | None:intergenic | 40.0% |
| TGTAGAATGAACTCTGATGC+TGG | - | chr1_1:31680577-31680596 | None:intergenic | 40.0% | |
| AGGACTCTTGAAATTGTTGC+TGG | - | chr1_1:31680912-31680931 | None:intergenic | 40.0% | |
| ACTTTCTCCACAAGTAGATG+AGG | + | chr1_1:31681001-31681020 | Msa0018700:CDS | 40.0% | |
| ATGATCACCTCATCTACTTG+TGG | - | chr1_1:31681011-31681030 | None:intergenic | 40.0% | |
| TCTCAGAAAGTGGAATCTTG+TGG | - | chr1_1:31681142-31681161 | None:intergenic | 40.0% | |
| CTTTCTTCATCTCAGACCTT+TGG | + | chr1_1:31681203-31681222 | Msa0018700:CDS | 40.0% | |
| CTCTTTGTGTTTACAGCATG+TGG | + | chr1_1:31682321-31682340 | Msa0018700:intron | 40.0% | |
| AACAATTGGATGGCCCTTTG+AGG | + | chr1_1:31680535-31680554 | Msa0018700:CDS | 45.0% | |
| !! | TGGGTTATTGGCTCCTCAAA+GGG | - | chr1_1:31680551-31680570 | None:intergenic | 45.0% |
| !! | ATGGGTTATTGGCTCCTCAA+AGG | - | chr1_1:31680552-31680571 | None:intergenic | 45.0% |
| ! | TCACTGCTTGTGGATTGTGA+GGG | - | chr1_1:31680665-31680684 | None:intergenic | 45.0% |
| CAAGCTTCTTAACCATGCCA+AGG | - | chr1_1:31680688-31680707 | None:intergenic | 45.0% | |
| GATCGCGTTCACTAGCATTA+TGG | - | chr1_1:31680712-31680731 | None:intergenic | 45.0% | |
| TCTTCATCTCAGACCTTTGG+AGG | + | chr1_1:31681206-31681225 | Msa0018700:CDS | 45.0% | |
| CTTCATCTCAGACCTTTGGA+GGG | + | chr1_1:31681207-31681226 | Msa0018700:CDS | 45.0% | |
| ATAGAAGACTCTCCCTCCAA+AGG | - | chr1_1:31681222-31681241 | None:intergenic | 45.0% | |
| AACAATTGGATGGCCCTTTG+AGG | + | chr1_1:31680535-31680554 | Msa0018700:CDS | 45.0% | |
| !! | TGGGTTATTGGCTCCTCAAA+GGG | - | chr1_1:31680551-31680570 | None:intergenic | 45.0% |
| !! | ATGGGTTATTGGCTCCTCAA+AGG | - | chr1_1:31680552-31680571 | None:intergenic | 45.0% |
| ! | TCACTGCTTGTGGATTGTGA+GGG | - | chr1_1:31680665-31680684 | None:intergenic | 45.0% |
| CAAGCTTCTTAACCATGCCA+AGG | - | chr1_1:31680688-31680707 | None:intergenic | 45.0% | |
| GATCGCGTTCACTAGCATTA+TGG | - | chr1_1:31680712-31680731 | None:intergenic | 45.0% | |
| TCTTCATCTCAGACCTTTGG+AGG | + | chr1_1:31681206-31681225 | Msa0018700:CDS | 45.0% | |
| CTTCATCTCAGACCTTTGGA+GGG | + | chr1_1:31681207-31681226 | Msa0018700:CDS | 45.0% | |
| ATAGAAGACTCTCCCTCCAA+AGG | - | chr1_1:31681222-31681241 | None:intergenic | 45.0% | |
| !!! | TATAAGTAAATTTTTTTTAT+AGG | + | chr1_1:31681927-31681946 | Msa0018700:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTATA+GGG | + | chr1_1:31681928-31681947 | Msa0018700:intron | 5.0% |
| !!! | TATAAGTAAATTTTTTTTAT+AGG | + | chr1_1:31681927-31681946 | Msa0018700:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTATA+GGG | + | chr1_1:31681928-31681947 | Msa0018700:intron | 5.0% |
| ! | GTCACTGCTTGTGGATTGTG+AGG | - | chr1_1:31680666-31680685 | None:intergenic | 50.0% |
| CAATCCACAAGCAGTGACCT+TGG | + | chr1_1:31680668-31680687 | Msa0018700:CDS | 50.0% | |
| ! | GTCACTGCTTGTGGATTGTG+AGG | - | chr1_1:31680666-31680685 | None:intergenic | 50.0% |
| CAATCCACAAGCAGTGACCT+TGG | + | chr1_1:31680668-31680687 | Msa0018700:CDS | 50.0% | |
| CATGCCAAGGTCACTGCTTG+TGG | - | chr1_1:31680675-31680694 | None:intergenic | 55.0% | |
| CACAAGCAGTGACCTTGGCA+TGG | + | chr1_1:31680673-31680692 | Msa0018700:CDS | 55.0% | |
| CATGCCAAGGTCACTGCTTG+TGG | - | chr1_1:31680675-31680694 | None:intergenic | 55.0% | |
| CACAAGCAGTGACCTTGGCA+TGG | + | chr1_1:31680673-31680692 | Msa0018700:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 31680506 | 31682429 | 31680506 | ID=Msa0018700;Name=Msa0018700 |
| chr1_1 | mRNA | 31680506 | 31682429 | 31680506 | ID=Msa0018700-mRNA-1;Parent=Msa0018700;Name=Msa0018700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|3|0|248 |
| chr1_1 | exon | 31680506 | 31680796 | 31680506 | ID=Msa0018700-mRNA-1:exon:10378;Parent=Msa0018700-mRNA-1 |
| chr1_1 | exon | 31680894 | 31681256 | 31680894 | ID=Msa0018700-mRNA-1:exon:10379;Parent=Msa0018700-mRNA-1 |
| chr1_1 | exon | 31682337 | 31682429 | 31682337 | ID=Msa0018700-mRNA-1:exon:10380;Parent=Msa0018700-mRNA-1 |
| chr1_1 | CDS | 31680506 | 31680796 | 31680506 | ID=Msa0018700-mRNA-1:cds;Parent=Msa0018700-mRNA-1 |
| chr1_1 | CDS | 31680894 | 31681256 | 31680894 | ID=Msa0018700-mRNA-1:cds;Parent=Msa0018700-mRNA-1 |
| chr1_1 | CDS | 31682337 | 31682429 | 31682337 | ID=Msa0018700-mRNA-1:cds;Parent=Msa0018700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
