Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018710 | sp|Q9M1K1|ORG2_ARATH | 40.161 | 249 | 138 | 5 | 1 | 240 | 1 | 247 | 3.94e-51 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018710 | A0A396JNS6 | 89.069 | 247 | 27 | 0 | 1 | 247 | 1 | 247 | 5.54e-156 | 442 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0018710 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018710 | MtrunA17_Chr1g0170581 | 89.069 | 247 | 27 | 0 | 1 | 247 | 1 | 247 | 1.07e-159 | 442 |
| Msa0018710 | MtrunA17_Chr1g0170571 | 85.656 | 244 | 27 | 1 | 1 | 244 | 1 | 236 | 2.03e-140 | 393 |
| Msa0018710 | MtrunA17_Chr1g0170591 | 79.918 | 244 | 41 | 1 | 1 | 244 | 1 | 236 | 4.38e-140 | 392 |
| Msa0018710 | MtrunA17_Chr7g0256671 | 58.537 | 246 | 93 | 6 | 1 | 241 | 1 | 242 | 9.48e-67 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0018710 | AT3G56970.1 | 40.161 | 249 | 138 | 5 | 1 | 240 | 1 | 247 | 4.00e-52 | 170 |
| Msa0018710 | AT3G56980.1 | 40.613 | 261 | 129 | 7 | 1 | 242 | 1 | 254 | 6.47e-45 | 151 |
| Msa0018710 | AT2G41240.1 | 37.247 | 247 | 141 | 4 | 1 | 242 | 1 | 238 | 4.75e-43 | 146 |
| Msa0018710 | AT2G41240.2 | 36.842 | 247 | 141 | 5 | 1 | 242 | 1 | 237 | 1.37e-40 | 140 |
| Msa0018710 | AT5G04150.2 | 45.399 | 163 | 84 | 2 | 60 | 219 | 78 | 238 | 6.20e-36 | 128 |
| Msa0018710 | AT5G04150.1 | 43.716 | 183 | 95 | 4 | 60 | 237 | 78 | 257 | 1.59e-35 | 127 |
Find 42 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGCTGGTTATGGCTTAT+TGG | 0.197403 | 1_1:-31694390 | None:intergenic |
| TCAACTTGTTTCTGTAATTC+TGG | 0.201065 | 1_1:-31694803 | None:intergenic |
| TGTAACTATGCTTCTTCCTT+TGG | 0.251062 | 1_1:-31694904 | None:intergenic |
| CTTCTATAATTTGCATTTCC+AGG | 0.265122 | 1_1:+31695096 | Msa0018710:CDS |
| TTCTGAGATCTTGATATGTT+TGG | 0.287728 | 1_1:+31695015 | Msa0018710:CDS |
| GTAACTATGCTTCTTCCTTT+GGG | 0.307422 | 1_1:-31694903 | None:intergenic |
| TGAGAAGCTCTTATCAATAA+TGG | 0.319674 | 1_1:+31695656 | Msa0018710:CDS |
| CTTTCTTCATCTCAGACCTT+TGG | 0.339976 | 1_1:+31695064 | Msa0018710:CDS |
| TGAACTCTTGAAATTGTTGC+TGG | 0.346287 | 1_1:-31694770 | None:intergenic |
| CCATGCCAAGGTCACTGCTT+GGG | 0.380696 | 1_1:-31694503 | None:intergenic |
| TCTTCATCTCAGACCTTTGG+AGG | 0.399010 | 1_1:+31695067 | Msa0018710:CDS |
| ATTACCATTTGATCTGAAAC+AGG | 0.408153 | 1_1:-31694609 | None:intergenic |
| TCTTCCTGTTTCAGATCAAA+TGG | 0.432892 | 1_1:+31694605 | Msa0018710:CDS |
| ATGGCTTATTGGCTCTTCAA+AGG | 0.435523 | 1_1:-31694379 | None:intergenic |
| TCAGTAATGTCCTTGTAGAA+TGG | 0.456197 | 1_1:-31694417 | None:intergenic |
| TGAAGGACTAAGTAAGAGAA+AGG | 0.469978 | 1_1:+31694823 | Msa0018710:CDS |
| GTCACTGCTTGGGGATTGTG+AGG | 0.475792 | 1_1:-31694493 | None:intergenic |
| TGGCTTATTGGCTCTTCAAA+GGG | 0.488560 | 1_1:-31694378 | None:intergenic |
| CATATCAAGATCTCAGAAAG+TGG | 0.493296 | 1_1:-31695010 | None:intergenic |
| ACCATGCCAAGGTCACTGCT+TGG | 0.494432 | 1_1:-31694504 | None:intergenic |
| AAGAAAGATTAAGAAGCAAA+AGG | 0.505181 | 1_1:-31695048 | None:intergenic |
| AGAATAACCTCTTCTTCTTG+AGG | 0.516991 | 1_1:-31694869 | None:intergenic |
| ACAAATTATTGATCTTCTTG+CGG | 0.529574 | 1_1:-31694563 | None:intergenic |
| TTGATATGTTTGGAAAATGA+TGG | 0.537710 | 1_1:+31695025 | Msa0018710:CDS |
| ACTTTCTCCTCAAGAAGAAG+AGG | 0.540108 | 1_1:+31694862 | Msa0018710:CDS |
| CATGCCAAGGTCACTGCTTG+GGG | 0.544738 | 1_1:-31694502 | None:intergenic |
| CTTCATCTCAGACCTTTGGA+GGG | 0.548412 | 1_1:+31695068 | Msa0018710:CDS |
| AAGAAGCATAGTTACAACTC+TGG | 0.551749 | 1_1:+31694911 | Msa0018710:CDS |
| GCTCTTATCAATAATGGAGA+AGG | 0.554810 | 1_1:+31695662 | Msa0018710:CDS |
| GAATTACAGAAACAAGTTGA+AGG | 0.556198 | 1_1:+31694806 | Msa0018710:CDS |
| CAATCCCCAAGCAGTGACCT+TGG | 0.557330 | 1_1:+31694498 | Msa0018710:CDS |
| TCTCAGAAAGTGGAATCTTG+TGG | 0.569417 | 1_1:-31695000 | None:intergenic |
| AGTGTAACATGATATCTGAA+TGG | 0.570967 | 1_1:-31694975 | None:intergenic |
| TTCTGCAGGTGGATAAAGCA+CGG | 0.571707 | 1_1:+31695610 | Msa0018710:intron |
| ATAGAAGACTCTCCCTCCAA+AGG | 0.594272 | 1_1:-31695080 | None:intergenic |
| TCACTGCTTGGGGATTGTGA+GGG | 0.595294 | 1_1:-31694492 | None:intergenic |
| AGGAAGAAGTGAACGAAGTG+AGG | 0.599839 | 1_1:-31694589 | None:intergenic |
| CCCAAGCAGTGACCTTGGCA+TGG | 0.601433 | 1_1:+31694503 | Msa0018710:CDS |
| TTCTAAGCAAAGAATCCCAA+AGG | 0.620328 | 1_1:+31694888 | Msa0018710:CDS |
| TTATCAATAATGGAGAAGGA+AGG | 0.636620 | 1_1:+31695666 | Msa0018710:CDS |
| GCATCAAAATCCATTCTACA+AGG | 0.644037 | 1_1:+31694407 | Msa0018710:CDS |
| CAAGCTTCTTAACCATGCCA+AGG | 0.655760 | 1_1:-31694515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAACATGTAAGAAATA+AGG | + | chr1_1:31695424-31695443 | Msa0018710:intron | 15.0% |
| !! | TTAAAAACATGTAAGAAATA+AGG | + | chr1_1:31695424-31695443 | Msa0018710:intron | 15.0% |
| !! | TTTACAAATAGTTGATTACT+TGG | + | chr1_1:31695485-31695504 | Msa0018710:intron | 20.0% |
| !! | TTACAAATAGTTGATTACTT+GGG | + | chr1_1:31695486-31695505 | Msa0018710:intron | 20.0% |
| !! | TTTACAAATAGTTGATTACT+TGG | + | chr1_1:31695485-31695504 | Msa0018710:intron | 20.0% |
| !! | TTACAAATAGTTGATTACTT+GGG | + | chr1_1:31695486-31695505 | Msa0018710:intron | 20.0% |
| !!! | CATCCAATTTTTGAAAACAT+AGG | - | chr1_1:31694357-31694376 | None:intergenic | 25.0% |
| !! | CTATGTTTTCAAAAATTGGA+TGG | + | chr1_1:31694355-31694374 | Msa0018710:CDS | 25.0% |
| ! | ACAAATTATTGATCTTCTTG+CGG | - | chr1_1:31694566-31694585 | None:intergenic | 25.0% |
| ! | TTGATATGTTTGGAAAATGA+TGG | + | chr1_1:31695025-31695044 | Msa0018710:CDS | 25.0% |
| ! | AAGAAAGATTAAGAAGCAAA+AGG | - | chr1_1:31695051-31695070 | None:intergenic | 25.0% |
| !!! | CATCCAATTTTTGAAAACAT+AGG | - | chr1_1:31694357-31694376 | None:intergenic | 25.0% |
| !! | CTATGTTTTCAAAAATTGGA+TGG | + | chr1_1:31694355-31694374 | Msa0018710:CDS | 25.0% |
| ! | ACAAATTATTGATCTTCTTG+CGG | - | chr1_1:31694566-31694585 | None:intergenic | 25.0% |
| ! | TTGATATGTTTGGAAAATGA+TGG | + | chr1_1:31695025-31695044 | Msa0018710:CDS | 25.0% |
| ! | AAGAAAGATTAAGAAGCAAA+AGG | - | chr1_1:31695051-31695070 | None:intergenic | 25.0% |
| !! | CCAATTTTTGAAAACATAGG+AGG | - | chr1_1:31694354-31694373 | None:intergenic | 30.0% |
| ! | CCTCCTATGTTTTCAAAAAT+TGG | + | chr1_1:31694351-31694370 | Msa0018710:CDS | 30.0% |
| ! | TCATTTTCAGCATCAATTTG+AGG | + | chr1_1:31694449-31694468 | Msa0018710:CDS | 30.0% |
| ! | ATTACCATTTGATCTGAAAC+AGG | - | chr1_1:31694612-31694631 | None:intergenic | 30.0% |
| CCATTATTGACAGTTAGAAA+CGG | - | chr1_1:31694642-31694661 | None:intergenic | 30.0% | |
| AGGTATGCAAATTCCAAAAA+CGG | - | chr1_1:31694687-31694706 | None:intergenic | 30.0% | |
| !! | AACACAATAGTTCTAACAAG+AGG | - | chr1_1:31694707-31694726 | None:intergenic | 30.0% |
| !! | TCAACTTGTTTCTGTAATTC+TGG | - | chr1_1:31694806-31694825 | None:intergenic | 30.0% |
| ! | GAATTACAGAAACAAGTTGA+AGG | + | chr1_1:31694806-31694825 | Msa0018710:CDS | 30.0% |
| !! | GTTTTGTAGTTTCAAGTAGT+AGG | + | chr1_1:31694933-31694952 | Msa0018710:CDS | 30.0% |
| AGTGTAACATGATATCTGAA+TGG | - | chr1_1:31694978-31694997 | None:intergenic | 30.0% | |
| !! | TTCTGAGATCTTGATATGTT+TGG | + | chr1_1:31695015-31695034 | Msa0018710:CDS | 30.0% |
| ! | CTTCTATAATTTGCATTTCC+AGG | + | chr1_1:31695096-31695115 | Msa0018710:CDS | 30.0% |
| GATGTATAGACTCATATAAG+AGG | + | chr1_1:31695552-31695571 | Msa0018710:intron | 30.0% | |
| GAAAACACATAAGTGCTTTA+AGG | - | chr1_1:31695593-31695612 | None:intergenic | 30.0% | |
| TGAGAAGCTCTTATCAATAA+TGG | + | chr1_1:31695656-31695675 | Msa0018710:CDS | 30.0% | |
| ! | TTATCAATAATGGAGAAGGA+AGG | + | chr1_1:31695666-31695685 | Msa0018710:CDS | 30.0% |
| !! | CCAATTTTTGAAAACATAGG+AGG | - | chr1_1:31694354-31694373 | None:intergenic | 30.0% |
| ! | CCTCCTATGTTTTCAAAAAT+TGG | + | chr1_1:31694351-31694370 | Msa0018710:CDS | 30.0% |
| ! | TCATTTTCAGCATCAATTTG+AGG | + | chr1_1:31694449-31694468 | Msa0018710:CDS | 30.0% |
| ! | ATTACCATTTGATCTGAAAC+AGG | - | chr1_1:31694612-31694631 | None:intergenic | 30.0% |
| CCATTATTGACAGTTAGAAA+CGG | - | chr1_1:31694642-31694661 | None:intergenic | 30.0% | |
| AGGTATGCAAATTCCAAAAA+CGG | - | chr1_1:31694687-31694706 | None:intergenic | 30.0% | |
| !! | AACACAATAGTTCTAACAAG+AGG | - | chr1_1:31694707-31694726 | None:intergenic | 30.0% |
| !! | TCAACTTGTTTCTGTAATTC+TGG | - | chr1_1:31694806-31694825 | None:intergenic | 30.0% |
| ! | GAATTACAGAAACAAGTTGA+AGG | + | chr1_1:31694806-31694825 | Msa0018710:CDS | 30.0% |
| !! | GTTTTGTAGTTTCAAGTAGT+AGG | + | chr1_1:31694933-31694952 | Msa0018710:CDS | 30.0% |
| AGTGTAACATGATATCTGAA+TGG | - | chr1_1:31694978-31694997 | None:intergenic | 30.0% | |
| !! | TTCTGAGATCTTGATATGTT+TGG | + | chr1_1:31695015-31695034 | Msa0018710:CDS | 30.0% |
| ! | CTTCTATAATTTGCATTTCC+AGG | + | chr1_1:31695096-31695115 | Msa0018710:CDS | 30.0% |
| GATGTATAGACTCATATAAG+AGG | + | chr1_1:31695552-31695571 | Msa0018710:intron | 30.0% | |
| GAAAACACATAAGTGCTTTA+AGG | - | chr1_1:31695593-31695612 | None:intergenic | 30.0% | |
| TGAGAAGCTCTTATCAATAA+TGG | + | chr1_1:31695656-31695675 | Msa0018710:CDS | 30.0% | |
| ! | TTATCAATAATGGAGAAGGA+AGG | + | chr1_1:31695666-31695685 | Msa0018710:CDS | 30.0% |
| !! | ATGGATTTTGATGCTGGTTA+TGG | - | chr1_1:31694401-31694420 | None:intergenic | 35.0% |
| !! | TGTAGAATGGATTTTGATGC+TGG | - | chr1_1:31694407-31694426 | None:intergenic | 35.0% |
| GCATCAAAATCCATTCTACA+AGG | + | chr1_1:31694407-31694426 | Msa0018710:CDS | 35.0% | |
| TCAGTAATGTCCTTGTAGAA+TGG | - | chr1_1:31694420-31694439 | None:intergenic | 35.0% | |
| TCTTCCTGTTTCAGATCAAA+TGG | + | chr1_1:31694605-31694624 | Msa0018710:CDS | 35.0% | |
| CCGTTTCTAACTGTCAATAA+TGG | + | chr1_1:31694639-31694658 | Msa0018710:intron | 35.0% | |
| !!! | TCTAATTGTGATGCCGTTTT+TGG | + | chr1_1:31694671-31694690 | Msa0018710:intron | 35.0% |
| TGAACTCTTGAAATTGTTGC+TGG | - | chr1_1:31694773-31694792 | None:intergenic | 35.0% | |
| TGAAGGACTAAGTAAGAGAA+AGG | + | chr1_1:31694823-31694842 | Msa0018710:CDS | 35.0% | |
| AGAATAACCTCTTCTTCTTG+AGG | - | chr1_1:31694872-31694891 | None:intergenic | 35.0% | |
| TTCTAAGCAAAGAATCCCAA+AGG | + | chr1_1:31694888-31694907 | Msa0018710:CDS | 35.0% | |
| GTAACTATGCTTCTTCCTTT+GGG | - | chr1_1:31694906-31694925 | None:intergenic | 35.0% | |
| TGTAACTATGCTTCTTCCTT+TGG | - | chr1_1:31694907-31694926 | None:intergenic | 35.0% | |
| ! | AAGAAGCATAGTTACAACTC+TGG | + | chr1_1:31694911-31694930 | Msa0018710:CDS | 35.0% |
| CATATCAAGATCTCAGAAAG+TGG | - | chr1_1:31695013-31695032 | None:intergenic | 35.0% | |
| ! | GCTCTTATCAATAATGGAGA+AGG | + | chr1_1:31695662-31695681 | Msa0018710:CDS | 35.0% |
| !! | ATGGATTTTGATGCTGGTTA+TGG | - | chr1_1:31694401-31694420 | None:intergenic | 35.0% |
| !! | TGTAGAATGGATTTTGATGC+TGG | - | chr1_1:31694407-31694426 | None:intergenic | 35.0% |
| GCATCAAAATCCATTCTACA+AGG | + | chr1_1:31694407-31694426 | Msa0018710:CDS | 35.0% | |
| TCAGTAATGTCCTTGTAGAA+TGG | - | chr1_1:31694420-31694439 | None:intergenic | 35.0% | |
| TCTTCCTGTTTCAGATCAAA+TGG | + | chr1_1:31694605-31694624 | Msa0018710:CDS | 35.0% | |
| CCGTTTCTAACTGTCAATAA+TGG | + | chr1_1:31694639-31694658 | Msa0018710:intron | 35.0% | |
| !!! | TCTAATTGTGATGCCGTTTT+TGG | + | chr1_1:31694671-31694690 | Msa0018710:intron | 35.0% |
| TGAACTCTTGAAATTGTTGC+TGG | - | chr1_1:31694773-31694792 | None:intergenic | 35.0% | |
| TGAAGGACTAAGTAAGAGAA+AGG | + | chr1_1:31694823-31694842 | Msa0018710:CDS | 35.0% | |
| AGAATAACCTCTTCTTCTTG+AGG | - | chr1_1:31694872-31694891 | None:intergenic | 35.0% | |
| TTCTAAGCAAAGAATCCCAA+AGG | + | chr1_1:31694888-31694907 | Msa0018710:CDS | 35.0% | |
| GTAACTATGCTTCTTCCTTT+GGG | - | chr1_1:31694906-31694925 | None:intergenic | 35.0% | |
| TGTAACTATGCTTCTTCCTT+TGG | - | chr1_1:31694907-31694926 | None:intergenic | 35.0% | |
| ! | AAGAAGCATAGTTACAACTC+TGG | + | chr1_1:31694911-31694930 | Msa0018710:CDS | 35.0% |
| CATATCAAGATCTCAGAAAG+TGG | - | chr1_1:31695013-31695032 | None:intergenic | 35.0% | |
| ! | GCTCTTATCAATAATGGAGA+AGG | + | chr1_1:31695662-31695681 | Msa0018710:CDS | 35.0% |
| !! | TGGCTTATTGGCTCTTCAAA+GGG | - | chr1_1:31694381-31694400 | None:intergenic | 40.0% |
| !! | ATGGCTTATTGGCTCTTCAA+AGG | - | chr1_1:31694382-31694401 | None:intergenic | 40.0% |
| ! | TGATGCTGGTTATGGCTTAT+TGG | - | chr1_1:31694393-31694412 | None:intergenic | 40.0% |
| ACTTTCTCCTCAAGAAGAAG+AGG | + | chr1_1:31694862-31694881 | Msa0018710:CDS | 40.0% | |
| TCTCAGAAAGTGGAATCTTG+TGG | - | chr1_1:31695003-31695022 | None:intergenic | 40.0% | |
| CTTTCTTCATCTCAGACCTT+TGG | + | chr1_1:31695064-31695083 | Msa0018710:CDS | 40.0% | |
| CCTAGTGAAATTAACACACC+TGG | - | chr1_1:31695117-31695136 | None:intergenic | 40.0% | |
| CCAGGTGTGTTAATTTCACT+AGG | + | chr1_1:31695114-31695133 | Msa0018710:intron | 40.0% | |
| ! | AGCACTTATGTGTTTTCTGC+AGG | + | chr1_1:31695596-31695615 | Msa0018710:intron | 40.0% |
| ! | ACTTATGTGTTTTCTGCAGG+TGG | + | chr1_1:31695599-31695618 | Msa0018710:intron | 40.0% |
| !! | TGGCTTATTGGCTCTTCAAA+GGG | - | chr1_1:31694381-31694400 | None:intergenic | 40.0% |
| !! | ATGGCTTATTGGCTCTTCAA+AGG | - | chr1_1:31694382-31694401 | None:intergenic | 40.0% |
| ! | TGATGCTGGTTATGGCTTAT+TGG | - | chr1_1:31694393-31694412 | None:intergenic | 40.0% |
| ACTTTCTCCTCAAGAAGAAG+AGG | + | chr1_1:31694862-31694881 | Msa0018710:CDS | 40.0% | |
| TCTCAGAAAGTGGAATCTTG+TGG | - | chr1_1:31695003-31695022 | None:intergenic | 40.0% | |
| CTTTCTTCATCTCAGACCTT+TGG | + | chr1_1:31695064-31695083 | Msa0018710:CDS | 40.0% | |
| CCTAGTGAAATTAACACACC+TGG | - | chr1_1:31695117-31695136 | None:intergenic | 40.0% | |
| CCAGGTGTGTTAATTTCACT+AGG | + | chr1_1:31695114-31695133 | Msa0018710:intron | 40.0% | |
| ! | AGCACTTATGTGTTTTCTGC+AGG | + | chr1_1:31695596-31695615 | Msa0018710:intron | 40.0% |
| ! | ACTTATGTGTTTTCTGCAGG+TGG | + | chr1_1:31695599-31695618 | Msa0018710:intron | 40.0% |
| CAAGCTTCTTAACCATGCCA+AGG | - | chr1_1:31694518-31694537 | None:intergenic | 45.0% | |
| AGGAAGAAGTGAACGAAGTG+AGG | - | chr1_1:31694592-31694611 | None:intergenic | 45.0% | |
| TCTTCATCTCAGACCTTTGG+AGG | + | chr1_1:31695067-31695086 | Msa0018710:CDS | 45.0% | |
| CTTCATCTCAGACCTTTGGA+GGG | + | chr1_1:31695068-31695087 | Msa0018710:CDS | 45.0% | |
| ATAGAAGACTCTCCCTCCAA+AGG | - | chr1_1:31695083-31695102 | None:intergenic | 45.0% | |
| TTCTGCAGGTGGATAAAGCA+CGG | + | chr1_1:31695610-31695629 | Msa0018710:intron | 45.0% | |
| CAAGCTTCTTAACCATGCCA+AGG | - | chr1_1:31694518-31694537 | None:intergenic | 45.0% | |
| AGGAAGAAGTGAACGAAGTG+AGG | - | chr1_1:31694592-31694611 | None:intergenic | 45.0% | |
| TCTTCATCTCAGACCTTTGG+AGG | + | chr1_1:31695067-31695086 | Msa0018710:CDS | 45.0% | |
| CTTCATCTCAGACCTTTGGA+GGG | + | chr1_1:31695068-31695087 | Msa0018710:CDS | 45.0% | |
| ATAGAAGACTCTCCCTCCAA+AGG | - | chr1_1:31695083-31695102 | None:intergenic | 45.0% | |
| TTCTGCAGGTGGATAAAGCA+CGG | + | chr1_1:31695610-31695629 | Msa0018710:intron | 45.0% | |
| TCACTGCTTGGGGATTGTGA+GGG | - | chr1_1:31694495-31694514 | None:intergenic | 50.0% | |
| TCACTGCTTGGGGATTGTGA+GGG | - | chr1_1:31694495-31694514 | None:intergenic | 50.0% | |
| GTCACTGCTTGGGGATTGTG+AGG | - | chr1_1:31694496-31694515 | None:intergenic | 55.0% | |
| CAATCCCCAAGCAGTGACCT+TGG | + | chr1_1:31694498-31694517 | Msa0018710:CDS | 55.0% | |
| CATGCCAAGGTCACTGCTTG+GGG | - | chr1_1:31694505-31694524 | None:intergenic | 55.0% | |
| CCATGCCAAGGTCACTGCTT+GGG | - | chr1_1:31694506-31694525 | None:intergenic | 55.0% | |
| ACCATGCCAAGGTCACTGCT+TGG | - | chr1_1:31694507-31694526 | None:intergenic | 55.0% | |
| GTCACTGCTTGGGGATTGTG+AGG | - | chr1_1:31694496-31694515 | None:intergenic | 55.0% | |
| CAATCCCCAAGCAGTGACCT+TGG | + | chr1_1:31694498-31694517 | Msa0018710:CDS | 55.0% | |
| CATGCCAAGGTCACTGCTTG+GGG | - | chr1_1:31694505-31694524 | None:intergenic | 55.0% | |
| CCATGCCAAGGTCACTGCTT+GGG | - | chr1_1:31694506-31694525 | None:intergenic | 55.0% | |
| ACCATGCCAAGGTCACTGCT+TGG | - | chr1_1:31694507-31694526 | None:intergenic | 55.0% | |
| CCCAAGCAGTGACCTTGGCA+TGG | + | chr1_1:31694503-31694522 | Msa0018710:CDS | 60.0% | |
| CCCAAGCAGTGACCTTGGCA+TGG | + | chr1_1:31694503-31694522 | Msa0018710:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 31694336 | 31695707 | 31694336 | ID=Msa0018710;Name=Msa0018710 |
| chr1_1 | mRNA | 31694336 | 31695707 | 31694336 | ID=Msa0018710-mRNA-1;Parent=Msa0018710;Name=Msa0018710-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|247 |
| chr1_1 | exon | 31694336 | 31694626 | 31694336 | ID=Msa0018710-mRNA-1:exon:10390;Parent=Msa0018710-mRNA-1 |
| chr1_1 | exon | 31694755 | 31695117 | 31694755 | ID=Msa0018710-mRNA-1:exon:10391;Parent=Msa0018710-mRNA-1 |
| chr1_1 | exon | 31695618 | 31695707 | 31695618 | ID=Msa0018710-mRNA-1:exon:10392;Parent=Msa0018710-mRNA-1 |
| chr1_1 | CDS | 31694336 | 31694626 | 31694336 | ID=Msa0018710-mRNA-1:cds;Parent=Msa0018710-mRNA-1 |
| chr1_1 | CDS | 31694755 | 31695117 | 31694755 | ID=Msa0018710-mRNA-1:cds;Parent=Msa0018710-mRNA-1 |
| chr1_1 | CDS | 31695618 | 31695707 | 31695618 | ID=Msa0018710-mRNA-1:cds;Parent=Msa0018710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
