AlfalfaGEDB | Msa0019200

M. sativa cultivar zhongmu-4 / Msa0019200

KEGG: -
GO: -
PFAM: PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0019200	sp\|Q9FHG4\|LRKS7_ARATH	37.464	686	350	20	3	638	15	671	6.76e-118	370

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0019200	MtrunA17_Chr1g0170201	94.648	654	34	1	1	654	20	672	0.0	1283
Msa0019200	MtrunA17_Chr8g0367071	40.311	578	306	16	74	624	80	645	1.60e-117	366
Msa0019200	MtrunA17_Chr4g0049601	36.447	653	346	21	15	631	35	654	1.46e-116	364
Msa0019200	MtrunA17_Chr5g0433941	38.906	640	308	23	74	647	67	689	4.65e-113	355
Msa0019200	MtrunA17_Chr4g0049611	36.928	612	333	18	57	639	56	643	3.82e-112	352
Msa0019200	MtrunA17_Chr7g0274661	37.415	588	310	20	60	602	69	643	2.64e-110	347
Msa0019200	MtrunA17_Chr8g0366991	36.322	658	340	17	19	622	127	759	3.09e-110	350
Msa0019200	MtrunA17_Chr4g0049581	36.505	578	333	12	72	631	87	648	7.40e-110	347
Msa0019200	MtrunA17_Chr1g0175451	36.265	648	346	20	12	622	16	633	3.78e-108	341
Msa0019200	MtrunA17_Chr7g0274651	35.524	639	333	19	12	602	32	639	6.48e-108	341

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0019200	AT5G55830.1	37.464	686	350	20	3	638	15	671	6.87e-119	370
Msa0019200	AT5G10530.1	37.955	577	324	15	73	622	56	625	2.18e-114	357
Msa0019200	AT5G06740.1	37.113	582	329	15	72	632	68	633	2.50e-114	357
Msa0019200	AT5G06740.2	37.113	582	329	15	72	632	80	645	4.46e-114	357
Msa0019200	AT5G65600.1	35.814	645	349	21	13	622	32	646	1.18e-110	348
Msa0019200	AT5G03140.1	36.551	632	329	18	38	618	51	661	9.32e-108	342
Msa0019200	AT3G55550.1	37.147	638	334	23	67	654	55	675	4.18e-105	334
Msa0019200	AT3G08870.1	36.130	584	322	14	67	608	66	640	2.31e-104	332
Msa0019200	AT3G08870.2	36.130	584	322	14	67	608	87	661	3.88e-104	332
Msa0019200	AT3G53380.1	34.667	675	341	21	17	619	20	666	7.49e-103	329

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Find 132 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAACGTAAACTGAGCT+TGG	0.514865	1_1:-33371073	None:intergenic
AAAGAAAATCTTGTGGGAAG+AGG	0.545079	1_1:+33371400	Msa0019200:CDS
AAAGCCATCAAATCCTAAAT+TGG	0.289606	1_1:+33371125	Msa0019200:CDS
AAAGGCTTCATGTTGGAAAA+TGG	0.228861	1_1:+33371442	Msa0019200:CDS
AACAATTCAGTTTCAATGTT+TGG	0.267335	1_1:+33369984	Msa0019200:CDS
AACTCGACCAGCTCTGGTGA+TGG	0.514995	1_1:+33370119	Msa0019200:CDS
AAGACATTGAAAGCCTATCG+AGG	0.670272	1_1:+33371311	Msa0019200:CDS
AAGCTATATACATCTGATTC+AGG	0.351278	1_1:-33372309	None:intergenic
AAGGGGTTTGATGGTTGGAT+TGG	0.451173	1_1:+33372491	Msa0019200:CDS
AAGGTGGTAGTTATAATTGC+TGG	0.471882	1_1:-33370068	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATGGTGAATTACTTTGTA+TGG	+	chr1_1:33369899-33369918	Msa0019200:CDS	30.0%
CAAAAGTGGAAGAGATATTA+TGG	+	chr1_1:33370940-33370959	Msa0019200:CDS	30.0%
TATCAGGTAAGTGAATTGAA+TGG	-	chr1_1:33371048-33371067	None:intergenic	30.0%
AAAGCCATCAAATCCTAAAT+TGG	+	chr1_1:33371125-33371144	Msa0019200:CDS	30.0%
CCTAAATTGGTTATTCACAT+CGG	+	chr1_1:33371138-33371157	Msa0019200:CDS	30.0%
TTAGTTTACTGTCTGTTTGT+TGG	+	chr1_1:33371248-33371267	Msa0019200:CDS	30.0%
TAGTTTACTGTCTGTTTGTT+GGG	+	chr1_1:33371249-33371268	Msa0019200:CDS	30.0%
GTTCAGTAAAGAAAATCTTG+TGG	+	chr1_1:33371393-33371412	Msa0019200:CDS	30.0%
TGTTTATAAAGGCTTCATGT+TGG	+	chr1_1:33371435-33371454	Msa0019200:CDS	30.0%
TGATATTTCCCAATACACAT+AGG	-	chr1_1:33371577-33371596	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	33369810	33372728	33369810	ID=Msa0019200;Name=Msa0019200
chr1_1	mRNA	33369810	33372728	33369810	ID=Msa0019200-mRNA-1;Parent=Msa0019200;Name=Msa0019200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0.5\|0\|1\|1\|1\|3\|0\|654
chr1_1	exon	33369810	33370230	33369810	ID=Msa0019200-mRNA-1:exon:10636;Parent=Msa0019200-mRNA-1
chr1_1	exon	33370798	33371508	33370798	ID=Msa0019200-mRNA-1:exon:10637;Parent=Msa0019200-mRNA-1
chr1_1	exon	33371896	33372728	33371896	ID=Msa0019200-mRNA-1:exon:10638;Parent=Msa0019200-mRNA-1
chr1_1	CDS	33369810	33370230	33369810	ID=Msa0019200-mRNA-1:cds;Parent=Msa0019200-mRNA-1
chr1_1	CDS	33370798	33371508	33370798	ID=Msa0019200-mRNA-1:cds;Parent=Msa0019200-mRNA-1
chr1_1	CDS	33371896	33372728	33371896	ID=Msa0019200-mRNA-1:cds;Parent=Msa0019200-mRNA-1

Gene Sequence

>Msa0019200

ATGCTAATCAATGCTCTAACAGCTACAGAAAACACTGTGATTAGTCCAACTACATTCTCCTTTATGTCTTTTAGCCCTGAAAGTTGCAACAATGGTGAATTACTTTGTATGGGATCAGCTACTTCAGGAAATGGTTATATAAGTCTCACACCAGAGCCAAAGACAAAACAAAACAACAATTCAGTTTCAATGTTTGGAACATCTAACACAGACAACAAAGTAGGTAGGGTTTTGTATCCGCATCCGGTTCATGCTTGGCCAGCAATTATAACTACCACCTTTACTGTTAGGCTCACTCCGTTTGTAAAAAACTCGACCAGCTCTGGTGATGGAATTGCACTTGTATTTGCACAAGATAATAGGCCTTCGCCAAATGGTAGCTATGGTTCTTATCTTGGCATGTTTGATAGGTCTACTCAAGGTGGTGTTTTTCAACAAATTGGTGTGGAGTTAGACACATTCATGAACGAATTTGATCCAGATGGAAACCACATAGGCATAGTCACAACAAGCATAACAAATCCAGTTGCTATTCACAGTCTCAATAGCACTAATGCTGACCTCAAAAGTGGAAGAGATATTATGGTTAAAGTTGACTATAATGGATGGACTAAAATGATTTTTGTTTCAATAGGATACTCAAATAGCCAATTAAAGAGTGTTCTAAACCATTCAATTCACTTACCTGATATAATTCCAAGCTCAGTTTACGTTGGTTTCACAGCCTCAACTGGTAAAGCTTTTCCTCAAAGCCATCAAATCCTAAATTGGTTATTCACATCGGTGCCATTGCCTGTTCTTTCGGTTAAACACAGTAAAGTTGGAAAATACAAGATCATATTGACAACTGTTTTATCAGTTCTTGTGTTTGTTAGTTTACTGTCTGTTTGTTGGGAAGCTTGGAATAAAAGAAAAGAAAAGGGTGATCGAAAAGAAGACATTGAAAGCCTATCGAGGACGGCTGCAGATGTGCCTAAGATGTTCGGTTACAAGGAACTGTCAAAAGCAACTTGCAAGTTCAGTAAAGAAAATCTTGTGGGAAGAGGTGGATTTGGAAGTGTTTATAAAGGCTTCATGTTGGAAAATGGAAAAACCATAGCAGTAAAGAAAATTTCAGCAACGTCTAAGCAAGGTGAAAGAGAGTTCTTAGCCGAAATATGTACCATCGGTCGTCTTCGGCACAAAAACTTAGTGCAGCTCCAAGGTTGGTGTAATGAAGGCAAAAATCTTCTCTTAGTTTATGATTACATGCAAAATGGAAGCCTGGATCTCTTCATAGGGAAAGACATTTTAGACTGGCAAACAAGGCACAAGATATTAACAGGATTGGCATCAGCATTACTTTACCTTCATGAAGAGTGTGGAAATCCTGTTGTTCATAGAGATGTCAAACCTAACAACGTAATGCTTGATTCTAATTACAATGCTCATTTAGGCGATTTCGGACTCGCAAGGTTACTAAAAAATGAGGACTCAGTAACTACAAATTTAGCCGGGACATCGGGTTATTTAGCACCTGAAATAGGCTTCACAGGAAAAGCTACACCTGAATCAGATGTATATAGCTTTGGAATGGTTATACTTGAAGTCATTTGTGGTAAAAGGTCAAAAAGGGTAATGGAAGATAATAGTTTAGTTGATTATGTATGGAATTTGCATGCTCAAAATCAAATACTTGAGTGTGTTGATCAACAACTGAAAAATTCTTTTGATGTGGAAGAAGCTAAAAGGGGTTTGATGGTTGGATTGGCATGCTTGCATCCAGATTCATTGTTTAGGCCAAAAATGAGAAAAATTGTGCACATTTTTTTGAATCCAAATGAACCACTAATGGAATTACCTAGAACGCGGCCAACTGGAGTTTATGTATCGGTTTCTTGTACTTCATTCACAGACTTTGTGTCTAGAGCCGAGTTACAGCTCCATTCGTCCACCACATCGATGAACGAAATTTCTACTTATTAG

Protein sequence

>Msa0019200

MLINALTATENTVISPTTFSFMSFSPESCNNGELLCMGSATSGNGYISLTPEPKTKQNNNSVSMFGTSNTDNKVGRVLYPHPVHAWPAIITTTFTVRLTPFVKNSTSSGDGIALVFAQDNRPSPNGSYGSYLGMFDRSTQGGVFQQIGVELDTFMNEFDPDGNHIGIVTTSITNPVAIHSLNSTNADLKSGRDIMVKVDYNGWTKMIFVSIGYSNSQLKSVLNHSIHLPDIIPSSVYVGFTASTGKAFPQSHQILNWLFTSVPLPVLSVKHSKVGKYKIILTTVLSVLVFVSLLSVCWEAWNKRKEKGDRKEDIESLSRTAADVPKMFGYKELSKATCKFSKENLVGRGGFGSVYKGFMLENGKTIAVKKISATSKQGEREFLAEICTIGRLRHKNLVQLQGWCNEGKNLLLVYDYMQNGSLDLFIGKDILDWQTRHKILTGLASALLYLHEECGNPVVHRDVKPNNVMLDSNYNAHLGDFGLARLLKNEDSVTTNLAGTSGYLAPEIGFTGKATPESDVYSFGMVILEVICGKRSKRVMEDNSLVDYVWNLHAQNQILECVDQQLKNSFDVEEAKRGLMVGLACLHPDSLFRPKMRKIVHIFLNPNEPLMELPRTRPTGVYVSVSCTSFTDFVSRAELQLHSSTTSMNEISTY*