AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0019610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019610 MtrunA17_Chr7g0269061 93.377 151 10 0 167 317 83 233 2.40e-98 290
Msa0019610 MtrunA17_Chr2g0282451 93.377 151 10 0 167 317 83 233 2.53e-98 290
Msa0019610 MtrunA17_Chr1g0169761 94.495 109 6 0 35 143 1 109 1.02e-70 218
Msa0019610 MtrunA17_Chr8g0376821 87.156 109 14 0 35 143 1 109 1.00e-63 200
Msa0019610 MtrunA17_Chr4g0074101 72.222 126 18 1 35 143 1 126 8.49e-58 185
Msa0019610 MtrunA17_Chr1g0175601 76.147 109 26 0 35 143 1 109 2.43e-53 173
Msa0019610 MtrunA17_Chr1g0180591 76.147 109 26 0 35 143 1 109 9.47e-53 172
Msa0019610 MtrunA17_Chr1g0175611 74.312 109 28 0 35 143 1 109 1.61e-50 166
Msa0019610 MtrunA17_Chr8g0357771 61.111 108 42 0 35 142 1 108 1.29e-40 140
Msa0019610 MtrunA17_Chr8g0356071 60.550 109 40 1 35 143 1 106 1.06e-39 137
Msa0019610 MtrunA17_Chr4g0052061 48.182 110 55 2 35 143 1 109 6.54e-26 101
Msa0019610 MtrunA17_Chr1g0206991 46.000 100 52 1 37 134 10 109 5.87e-23 94.4
Msa0019610 MtrunA17_Chr1g0188671 40.496 121 66 2 30 148 41 157 6.26e-22 93.6
Msa0019610 MtrunA17_Chr3g0099411 60.294 68 27 0 37 104 10 77 6.62e-22 92.4
Msa0019610 MtrunA17_Chr4g0052081 45.794 107 55 2 35 138 1 107 6.89e-22 91.3
Msa0019610 MtrunA17_Chr3g0119901 41.228 114 61 2 37 144 10 123 8.41e-22 91.7
Msa0019610 MtrunA17_Chr5g0419601 53.333 75 35 0 30 104 3 77 1.42e-21 91.7
Msa0019610 MtrunA17_Chr1g0206721 60.294 68 27 0 37 104 10 77 1.61e-21 91.7
Msa0019610 MtrunA17_Chr3g0099421 58.824 68 28 0 37 104 35 102 2.41e-21 91.7
Msa0019610 MtrunA17_Chr2g0333981 40.541 111 64 1 35 145 11 119 2.43e-21 89.7
Msa0019610 MtrunA17_Chr3g0085241 40.678 118 64 2 37 148 42 159 3.18e-21 91.3
Msa0019610 MtrunA17_Chr2g0292791 54.667 75 34 0 30 104 3 77 1.07e-20 89.4
Msa0019610 MtrunA17_Chr1g0206701 58.824 68 28 0 37 104 10 77 1.32e-20 89.0
Msa0019610 MtrunA17_Chr1g0149391 43.119 109 59 2 37 143 10 117 2.65e-20 88.2
Msa0019610 MtrunA17_Chr8g0355091 57.353 68 29 0 37 104 10 77 3.05e-20 88.2
Msa0019610 MtrunA17_Chr3g0089151 39.831 118 67 2 30 144 3 119 3.26e-20 85.1
Msa0019610 MtrunA17_Chr5g0422421 51.948 77 37 0 30 106 3 79 5.29e-20 87.4
Msa0019610 MtrunA17_Chr3g0089141 55.882 68 30 0 37 104 10 77 9.28e-20 86.7
Msa0019610 MtrunA17_Chr1g0187361 52.564 78 34 1 29 106 5 79 9.57e-20 86.7
Msa0019610 MtrunA17_Chr1g0208561 55.882 68 30 0 37 104 10 77 1.08e-19 86.3
Msa0019610 MtrunA17_Chr2g0300421 32.620 187 91 6 37 217 10 167 1.87e-19 84.3
Msa0019610 MtrunA17_Chr2g0300441 42.593 108 60 1 38 143 11 118 3.22e-19 85.1
Msa0019610 MtrunA17_Chr8g0379021 40.476 126 58 3 27 138 6 128 3.28e-19 84.0
Msa0019610 MtrunA17_Chr4g0018951 53.846 65 30 0 50 114 26 90 4.17e-19 83.2
Msa0019610 MtrunA17_Chr5g0422941 45.783 83 45 0 30 112 3 85 1.88e-18 83.2
Msa0019610 MtrunA17_Chr1g0208581 52.941 68 32 0 37 104 10 77 2.33e-18 82.8
Msa0019610 MtrunA17_Chr2g0325971 54.412 68 31 0 37 104 10 77 3.02e-18 82.4
Msa0019610 MtrunA17_Chr2g0317451 52.941 68 32 0 37 104 10 77 3.92e-18 82.4
Msa0019610 MtrunA17_Chr2g0317481 52.941 68 32 0 37 104 10 77 3.96e-18 82.4
Msa0019610 MtrunA17_Chr1g0206691 63.636 55 20 0 52 106 8 62 1.91e-17 80.1
Msa0019610 MtrunA17_Chr1g0187351 57.895 57 24 0 52 108 8 64 2.90e-17 75.5
Msa0019610 MtrunA17_Chr4g0020221 49.367 79 39 1 35 113 1 78 1.01e-16 78.6
Msa0019610 MtrunA17_Chr5g0404951 51.613 62 30 0 35 96 1 62 1.87e-16 77.4
Msa0019610 MtrunA17_Chr7g0246431 39.423 104 60 1 35 138 1 101 3.73e-16 76.3
Msa0019610 MtrunA17_Chr7g0238991 44.118 102 45 2 52 153 37 126 4.16e-16 76.6
Msa0019610 MtrunA17_Chr2g0284911 38.596 114 64 2 37 144 18 131 6.78e-16 76.3
Msa0019610 MtrunA17_Chr8g0351041 49.275 69 35 0 35 103 1 69 9.15e-16 73.9
Msa0019610 MtrunA17_Chr5g0427401 48.611 72 37 0 35 106 1 72 9.62e-16 75.5
Msa0019610 MtrunA17_Chr8g0380021 41.176 102 57 1 37 138 19 117 9.63e-16 75.9
Msa0019610 MtrunA17_Chr1g0173161 52.308 65 31 0 35 99 1 65 1.21e-15 71.2
Msa0019610 MtrunA17_Chr3g0097101 48.193 83 39 1 25 103 2 84 2.10e-15 74.7
Msa0019610 MtrunA17_Chr4g0071601 50.000 64 32 0 51 114 27 90 3.73e-15 72.8
Msa0019610 MtrunA17_Chr4g0049901 45.570 79 42 1 22 99 13 91 5.22e-15 73.6
Msa0019610 MtrunA17_Chr8g0351031 53.226 62 29 0 35 96 1 62 8.01e-15 72.8
Msa0019610 MtrunA17_Chr4g0057151 46.377 69 37 0 35 103 1 69 1.93e-14 71.2
Msa0019610 MtrunA17_Chr3g0111841 60.417 48 19 0 52 99 12 59 2.82e-14 67.0
Msa0019610 MtrunA17_Chr3g0077501 45.333 75 41 0 35 109 1 75 5.17e-14 70.5
Msa0019610 MtrunA17_Chr5g0425191 56.140 57 25 0 35 91 1 57 5.51e-14 67.4
Msa0019610 MtrunA17_Chr3g0142191 50.000 62 31 0 35 96 1 62 6.55e-14 70.1
Msa0019610 MtrunA17_Chr8g0351051 47.826 69 36 0 35 103 1 69 6.56e-14 70.5
Msa0019610 MtrunA17_Chr2g0279821 45.333 75 41 0 35 109 1 75 8.93e-14 70.1
Msa0019610 MtrunA17_Chr5g0427921 53.448 58 27 0 35 92 1 58 2.09e-13 64.3
Msa0019610 MtrunA17_Chr4g0044071 53.448 58 27 0 35 92 1 58 2.18e-13 65.9
Msa0019610 MtrunA17_Chr5g0412461 38.776 98 47 2 35 131 1 86 3.20e-13 68.2
Msa0019610 MtrunA17_Chr5g0412271 38.776 98 47 2 35 131 1 86 3.37e-13 68.2
Msa0019610 MtrunA17_Chr4g0049541 46.377 69 37 0 35 103 1 69 4.07e-13 67.8
Msa0019610 MtrunA17_Chr4g0018421 44.444 72 39 1 35 105 1 72 7.84e-13 66.6
Msa0019610 MtrunA17_Chr3g0122251 38.211 123 67 3 35 153 1 118 8.85e-13 67.4
Msa0019610 MtrunA17_Chr3g0111931 52.727 55 26 0 52 106 6 60 1.09e-12 63.9
Msa0019610 MtrunA17_Chr7g0220121 38.636 88 48 3 35 116 1 88 1.24e-12 67.0
Msa0019610 MtrunA17_Chr1g0204111 44.595 74 41 0 32 105 14 87 1.39e-12 67.0
Msa0019610 MtrunA17_Chr2g0308251 47.368 57 30 0 35 91 1 57 1.57e-12 62.8
Msa0019610 MtrunA17_Chr1g0166611 65.909 44 15 0 49 92 19 62 1.80e-12 63.9
Msa0019610 MtrunA17_Chr5g0417661 38.667 75 44 1 16 88 35 109 1.96e-12 63.5
Msa0019610 MtrunA17_Chr8g0377561 50.877 57 28 0 35 91 1 57 1.98e-12 62.8
Msa0019610 MtrunA17_Chr1g0164791 45.070 71 37 1 35 103 1 71 2.44e-12 65.9
Msa0019610 MtrunA17_Chr3g0134451 45.070 71 38 1 35 104 1 71 2.58e-12 66.6
Msa0019610 MtrunA17_Chr5g0411691 46.377 69 37 0 35 103 1 69 2.62e-12 65.9
Msa0019610 MtrunA17_Chr7g0246381 44.118 68 33 1 35 97 1 68 2.96e-12 61.6
Msa0019610 MtrunA17_Chr5g0420091 50.877 57 28 0 35 91 1 57 5.52e-12 64.3
Msa0019610 MtrunA17_Chr7g0220111 50.877 57 28 0 35 91 1 57 8.52e-12 64.3
Msa0019610 MtrunA17_Chr5g0420081 47.368 57 30 0 35 91 1 57 1.12e-11 63.9
Msa0019610 MtrunA17_Chr4g0061691 32.308 130 78 5 35 161 1 123 1.15e-11 63.9
Msa0019610 MtrunA17_Chr4g0061671 48.276 58 30 0 35 92 1 58 1.24e-11 62.8
Msa0019610 MtrunA17_Chr3g0125241 38.462 65 40 0 35 99 26 90 1.42e-11 63.2
Msa0019610 MtrunA17_Chr6g0455511 50.877 57 28 0 35 91 1 57 2.18e-11 63.2
Msa0019610 MtrunA17_Chr1g0159661 36.923 65 41 0 35 99 1 65 2.43e-11 62.0
Msa0019610 MtrunA17_Chr8g0366231 36.559 93 45 2 35 116 1 90 5.73e-11 62.0
Msa0019610 MtrunA17_Chr3g0111831 47.368 57 30 0 52 108 20 76 6.91e-11 58.2
Msa0019610 MtrunA17_Chr8g0345001 32.110 109 74 0 37 145 19 127 7.16e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0019610 AT2G27490.2 62.937 143 53 0 167 309 83 225 5.05e-63 200
Msa0019610 AT2G27490.3 62.937 143 53 0 167 309 83 225 5.05e-63 200
Msa0019610 AT2G27490.1 62.937 143 53 0 167 309 83 225 5.05e-63 200
Msa0019610 AT2G27490.4 62.937 143 53 0 167 309 83 225 5.05e-63 200
Msa0019610 AT2G34440.1 47.200 125 61 2 35 154 1 125 1.23e-30 114
Msa0019610 AT3G66656.1 47.368 114 55 1 35 143 1 114 9.53e-28 107
Msa0019610 AT2G24840.1 44.144 111 54 2 37 143 64 170 9.41e-25 101
Msa0019610 AT5G60440.1 44.144 111 58 1 37 143 8 118 9.25e-21 91.3
Msa0019610 AT1G01530.1 41.584 101 59 0 37 137 8 108 2.20e-18 83.6
Msa0019610 AT2G45660.2 36.134 119 71 2 35 153 1 114 1.34e-17 79.3
Msa0019610 AT5G13790.2 43.564 101 45 2 35 134 1 90 1.82e-17 81.6
Msa0019610 AT1G65360.1 35.514 107 69 0 37 143 8 114 5.59e-17 79.3
Msa0019610 AT2G45660.1 36.134 119 71 2 35 153 1 114 7.90e-17 78.6
Msa0019610 AT3G57230.2 45.652 92 42 2 35 125 1 85 1.40e-16 76.3
Msa0019610 AT5G62165.6 37.963 108 56 2 35 138 1 101 1.80e-16 75.9
Msa0019610 AT5G62165.9 37.963 108 56 2 35 138 1 101 1.80e-16 75.9
Msa0019610 AT5G62165.7 37.963 108 56 2 35 138 1 101 1.80e-16 75.9
Msa0019610 AT5G62165.8 37.963 108 56 2 35 138 1 101 1.80e-16 75.9
Msa0019610 AT5G62165.13 37.963 108 56 2 35 138 1 101 1.80e-16 75.9
Msa0019610 AT1G72350.1 57.143 70 28 1 37 106 44 111 1.82e-16 77.8
Msa0019610 AT4G22950.2 50.725 69 34 0 35 103 1 69 1.93e-16 76.3
Msa0019610 AT5G51870.3 49.296 71 36 0 33 103 9 79 2.37e-16 77.4
Msa0019610 AT5G62165.17 37.963 108 56 2 35 138 1 101 2.51e-16 75.9
Msa0019610 AT5G62165.12 37.963 108 56 2 35 138 1 101 2.51e-16 75.9
Msa0019610 AT5G62165.11 37.963 108 56 2 35 138 1 101 2.51e-16 75.9
Msa0019610 AT4G09960.5 34.711 121 74 1 33 153 9 124 2.73e-16 77.4
Msa0019610 AT4G36590.1 41.414 99 45 2 37 133 8 95 2.95e-16 77.8
Msa0019610 AT4G09960.6 35.000 120 73 1 34 153 1 115 3.14e-16 77.4
Msa0019610 AT5G51870.2 49.275 69 35 0 35 103 1 69 3.38e-16 75.9
Msa0019610 AT4G09960.2 35.294 119 72 1 35 153 1 114 3.62e-16 76.6
Msa0019610 AT1G47760.1 40.000 100 48 2 35 134 1 88 3.98e-16 75.9
Msa0019610 AT5G51860.2 44.578 83 46 0 35 117 1 83 4.15e-16 76.3
Msa0019610 AT5G51860.1 44.578 83 46 0 35 117 1 83 4.36e-16 76.3
Msa0019610 AT4G09960.1 35.294 119 72 1 35 153 1 114 4.85e-16 76.6
Msa0019610 AT3G61120.1 33.333 138 81 2 35 170 1 129 6.08e-16 76.6
Msa0019610 AT5G51870.5 49.275 69 35 0 35 103 24 92 6.63e-16 75.5
Msa0019610 AT5G51870.1 49.275 69 35 0 35 103 1 69 6.84e-16 75.9
Msa0019610 AT4G09960.4 34.615 130 74 2 24 153 91 209 7.65e-16 77.8
Msa0019610 AT4G11880.2 41.379 116 62 3 35 144 1 116 7.88e-16 75.1
Msa0019610 AT4G11880.3 41.379 116 62 3 35 144 1 116 7.88e-16 75.1
Msa0019610 AT4G09960.3 35.294 119 72 1 35 153 27 140 8.67e-16 76.6
Msa0019610 AT5G13790.1 49.275 69 35 0 35 103 1 69 8.67e-16 76.6
Msa0019610 AT3G57230.1 45.652 92 42 2 35 125 1 85 9.79e-16 75.9
Msa0019610 AT3G57230.4 45.652 92 42 2 35 125 1 85 9.79e-16 75.9
Msa0019610 AT5G62165.10 37.963 108 56 2 35 138 1 101 1.09e-15 75.1
Msa0019610 AT5G62165.4 37.963 108 56 2 35 138 1 101 1.09e-15 75.1
Msa0019610 AT5G51870.4 49.275 69 35 0 35 103 1 69 1.39e-15 75.1
Msa0019610 AT4G22950.3 50.725 69 34 0 35 103 1 69 1.46e-15 75.1
Msa0019610 AT4G22950.1 50.725 69 34 0 35 103 1 69 1.46e-15 75.1
Msa0019610 AT5G62165.3 37.963 108 56 2 35 138 1 101 1.47e-15 74.7
Msa0019610 AT5G62165.1 37.963 108 56 2 35 138 1 101 1.47e-15 74.7
Msa0019610 AT5G62165.2 37.963 108 56 2 35 138 1 101 1.47e-15 74.7
Msa0019610 AT3G57390.3 50.725 69 34 0 35 103 1 69 2.60e-15 74.7
Msa0019610 AT5G62165.14 44.048 84 43 1 35 114 1 84 3.93e-15 70.9
Msa0019610 AT2G42830.1 30.409 171 105 4 37 207 18 174 4.45e-15 74.3
Msa0019610 AT3G57390.1 50.725 69 34 0 35 103 1 69 4.57e-15 74.3
Msa0019610 AT3G04100.1 40.217 92 44 1 31 122 9 89 6.41e-15 73.2
Msa0019610 AT4G11880.4 41.379 116 62 3 35 144 1 116 7.26e-15 73.2
Msa0019610 AT4G11880.1 41.379 116 62 3 35 144 1 116 7.26e-15 73.2
Msa0019610 AT3G58780.4 36.000 125 75 2 37 161 18 137 9.95e-15 73.9
Msa0019610 AT2G42830.2 30.909 165 100 4 37 201 18 168 1.33e-14 72.8
Msa0019610 AT5G65070.4 45.455 77 40 1 35 109 1 77 1.74e-14 70.5
Msa0019610 AT4G18960.1 36.134 119 71 1 27 145 14 127 1.90e-14 72.4
Msa0019610 AT3G58780.5 40.385 104 59 1 37 140 24 124 1.99e-14 72.4
Msa0019610 AT3G58780.1 40.385 104 59 1 37 140 18 118 2.04e-14 72.4
Msa0019610 AT2G22630.1 54.839 62 28 0 35 96 1 62 2.46e-14 71.6
Msa0019610 AT2G22630.2 54.839 62 28 0 35 96 1 62 2.46e-14 71.6
Msa0019610 AT2G45650.1 47.826 69 36 0 35 103 1 69 2.77e-14 72.0
Msa0019610 AT1G17310.1 48.148 81 35 2 51 126 63 141 5.39e-14 70.5
Msa0019610 AT3G54340.1 48.387 62 32 0 35 96 1 62 5.94e-14 70.9
Msa0019610 AT1G17310.2 48.148 81 35 2 51 126 74 152 6.10e-14 70.9
Msa0019610 AT1G29962.1 44.444 72 40 0 37 108 9 80 6.56e-14 69.7
Msa0019610 AT1G71692.1 45.833 72 38 1 35 105 1 72 7.42e-14 70.1
Msa0019610 AT4G37940.3 49.275 69 35 0 35 103 1 69 7.68e-14 69.3
Msa0019610 AT4G37940.1 49.275 69 35 0 35 103 1 69 9.00e-14 70.1
Msa0019610 AT5G65070.1 45.455 77 40 1 35 109 1 77 9.81e-14 69.7
Msa0019610 AT4G37940.4 49.275 69 35 0 35 103 1 69 9.85e-14 69.7
Msa0019610 AT2G22540.3 40.206 97 47 1 35 131 1 86 1.18e-13 70.1
Msa0019610 AT2G22540.1 40.206 97 47 1 35 131 1 86 1.18e-13 70.1
Msa0019610 AT4G24540.1 37.895 95 58 1 35 129 1 94 1.23e-13 69.7
Msa0019610 AT5G10140.2 40.000 100 54 3 35 129 1 99 1.42e-13 68.2
Msa0019610 AT1G77980.1 50.704 71 34 1 35 104 1 71 1.54e-13 70.9
Msa0019610 AT5G65070.5 45.455 77 40 1 35 109 1 77 1.54e-13 69.3
Msa0019610 AT5G10140.3 40.000 100 54 3 35 129 1 99 1.73e-13 68.6
Msa0019610 AT1G28460.1 45.588 68 37 0 37 104 9 76 1.84e-13 68.2
Msa0019610 AT5G65070.2 45.455 77 40 1 35 109 1 77 2.00e-13 69.3
Msa0019610 AT3G58780.2 44.706 85 34 1 37 108 18 102 2.33e-13 69.3
Msa0019610 AT1G22130.1 60.377 53 21 0 35 87 1 53 3.60e-13 69.7
Msa0019610 AT5G10140.4 44.156 77 40 2 35 109 1 76 4.53e-13 67.4
Msa0019610 AT5G10140.1 44.156 77 40 2 35 109 1 76 5.00e-13 67.4
Msa0019610 AT1G24260.3 34.959 123 71 2 35 153 1 118 5.93e-13 68.2
Msa0019610 AT1G46408.1 34.375 128 73 3 36 156 4 127 6.02e-13 68.6
Msa0019610 AT5G20240.2 45.455 66 36 0 35 100 1 66 6.15e-13 66.2
Msa0019610 AT5G65070.3 49.231 65 31 1 35 97 1 65 6.22e-13 67.8
Msa0019610 AT1G24260.2 34.959 123 71 2 35 153 1 118 6.72e-13 68.2
Msa0019610 AT2G22540.2 60.000 50 20 0 35 84 1 50 7.34e-13 67.8
Msa0019610 AT3G30260.1 35.036 137 80 5 35 168 1 131 1.45e-12 67.0
Msa0019610 AT3G58780.3 56.140 57 25 0 37 93 18 74 1.86e-12 67.0
Msa0019610 AT1G77950.3 46.479 71 37 1 35 104 1 71 1.87e-12 66.6
Msa0019610 AT1G77950.2 46.479 71 37 1 35 104 1 71 1.87e-12 66.6
Msa0019610 AT1G77950.1 46.479 71 37 1 35 104 1 71 1.87e-12 66.6
Msa0019610 AT1G77950.4 46.479 71 37 1 35 104 1 71 1.87e-12 66.6
Msa0019610 AT5G20240.1 45.455 66 36 0 35 100 1 66 2.31e-12 65.9
Msa0019610 AT2G14210.1 53.448 58 27 0 35 92 1 58 3.36e-12 65.9
Msa0019610 AT2G14210.2 53.448 58 27 0 35 92 1 58 3.57e-12 65.9
Msa0019610 AT5G65080.3 42.857 77 42 1 35 109 8 84 6.57e-12 64.3
Msa0019610 AT2G03710.3 50.877 57 28 0 35 91 1 57 1.01e-11 63.5
Msa0019610 AT1G24260.1 35.714 126 65 4 35 153 1 117 1.67e-11 63.9
Msa0019610 AT5G65060.3 50.909 55 27 0 35 89 1 55 1.85e-11 62.8
Msa0019610 AT5G15800.1 50.877 57 28 0 35 91 1 57 1.90e-11 63.9
Msa0019610 AT5G15800.2 50.877 57 28 0 35 91 1 57 2.53e-11 63.5
Msa0019610 AT5G65060.2 50.909 55 27 0 35 89 1 55 2.53e-11 62.4
Msa0019610 AT2G03710.2 50.877 57 28 0 35 91 1 57 2.61e-11 63.5
Msa0019610 AT2G03710.1 50.877 57 28 0 35 91 1 57 2.74e-11 63.5
Msa0019610 AT5G65060.1 50.909 55 27 0 35 89 1 55 2.98e-11 62.4
Msa0019610 AT1G26310.1 36.957 92 52 2 35 120 1 92 3.70e-11 63.2
Msa0019610 AT3G02310.2 49.123 57 29 0 35 91 1 57 3.78e-11 62.0
Msa0019610 AT5G23260.1 50.794 63 26 1 21 83 8 65 4.32e-11 63.2
Msa0019610 AT5G23260.4 50.794 63 26 1 21 83 8 65 4.75e-11 62.8
Msa0019610 AT5G23260.3 59.184 49 20 0 35 83 1 49 4.95e-11 62.4
Msa0019610 AT3G02310.1 49.123 57 29 0 35 91 1 57 5.51e-11 62.4
Msa0019610 AT5G23260.2 59.184 49 20 0 35 83 1 49 5.63e-11 62.4
Msa0019610 AT5G65050.2 47.273 55 29 0 35 89 1 55 5.79e-11 61.2
Msa0019610 AT5G60910.1 45.614 57 31 0 35 91 1 57 6.95e-11 62.0

Find 82 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTAATTTAATCTATTT+TGG 0.125420 1_1:+34159535 None:intergenic
AGTCTCTGAATCTGTGTTTC+AGG 0.209401 1_1:+34159890 None:intergenic
ATCAACCCAAACAACAATTA+TGG 0.224104 1_1:+34159913 None:intergenic
ATATATCCTCGGGGATCTTT+TGG 0.249734 1_1:-34160027 Msa0019610:CDS
AGATTCCGCTTGATGTTAAA+AGG 0.278505 1_1:-34159814 Msa0019610:CDS
CCTTGACATGGTATGAGTTT+TGG 0.281857 1_1:-34159703 Msa0019610:CDS
CTTCGTGAACTTGTCAATCT+TGG 0.285404 1_1:+34159937 None:intergenic
GTTAATACCTTTCTACTTCC+AGG 0.300067 1_1:+34163583 None:intergenic
CGAAGCCCATAATTGTTGTT+TGG 0.304889 1_1:-34159919 Msa0019610:CDS
GGTGACAGACCTTACTCTTT+TGG 0.315150 1_1:-34162253 Msa0019610:CDS
CGCTTGCATCAGTCTCTTGT+TGG 0.342002 1_1:+34162194 None:intergenic
GAAGCCCATAATTGTTGTTT+GGG 0.356043 1_1:-34159918 Msa0019610:CDS
GGCGCGGCGGAAGCGAATTC+CGG 0.356602 1_1:+34160659 None:intergenic
ATTTCAGAACGTATTGGTTC+AGG 0.359146 1_1:-34159735 Msa0019610:CDS
GACTTCTGCTCCGCACAAAA+TGG 0.371305 1_1:+34162297 None:intergenic
CATTCATTCATTGTTGCTCC+TGG 0.377060 1_1:-34163601 Msa0019610:CDS
CATTAGAAGATGGGTTTCCT+TGG 0.387460 1_1:+34162167 None:intergenic
AAGATCCCCGAGGATATATA+AGG 0.397948 1_1:+34160031 None:intergenic
AACGTATTGGTTCAGGTCAC+TGG 0.404115 1_1:-34159728 Msa0019610:CDS
ACATTCTCAAAGCGTCGAAC+GGG 0.411690 1_1:-34162346 Msa0019610:CDS
GTGAGGAGGATGGTCGGAAC+AGG 0.411728 1_1:-34159847 Msa0019610:CDS
TGAACAATTTCAGAACGTAT+TGG 0.424287 1_1:-34159741 Msa0019610:CDS
AGTCTCTTGTTGGAGATACT+TGG 0.434895 1_1:+34162204 None:intergenic
AGTTGTTGTTCTTTGTATGA+AGG 0.436523 1_1:-34159636 Msa0019610:CDS
TTGGCTCCTTATATATCCTC+GGG 0.445067 1_1:-34160037 Msa0019610:CDS
ATGAATGAATGAAGCTCGTT+GGG 0.450155 1_1:+34163613 None:intergenic
TCAACCCAAACAACAATTAT+GGG 0.451649 1_1:+34159914 None:intergenic
ATTAGAAGATGGGTTTCCTT+GGG 0.457016 1_1:+34162168 None:intergenic
TAGGAGGTGTTGCGTGAAGC+AGG 0.459893 1_1:-34162436 Msa0019610:CDS
ATCTTGGGAGCATTAGAAGA+TGG 0.462018 1_1:+34162157 None:intergenic
GTTGGCTCCTTATATATCCT+CGG 0.468349 1_1:-34160038 Msa0019610:CDS
AATGTAACTTGCCTCGTGTT+GGG 0.491629 1_1:+34162364 None:intergenic
TACATTCTCAAAGCGTCGAA+CGG 0.497566 1_1:-34162347 Msa0019610:CDS
ATTAAATTAAAGAAAACAAA+AGG 0.502860 1_1:-34159526 None:intergenic
ATTCAAGTCATCAAGTGAAC+CGG 0.507177 1_1:+34159763 None:intergenic
CCTGGATGGCCAAAAGAGTA+AGG 0.507377 1_1:+34162244 None:intergenic
ATCTTCTAATGCTCCCAAGA+TGG 0.515526 1_1:-34162155 Msa0019610:CDS
CACTTCACAAAACACGCTAT+AGG 0.518504 1_1:+34159596 None:intergenic
AATGAATGAATGAAGCTCGT+TGG 0.518893 1_1:+34163612 None:intergenic
GTTGTGAAGCTGTGGTCAAA+AGG 0.519512 1_1:-34160001 Msa0019610:CDS
TCTTGGGAGCATTAGAAGAT+GGG 0.519973 1_1:+34162158 None:intergenic
TCATTTATAGATTACTTACT+CGG 0.528326 1_1:-34160707 Msa0019610:intron
AACACAGATTCAGAGACTCT+TGG 0.532676 1_1:-34159885 Msa0019610:CDS
AATTCCGGTGTGGTGGTCGC+CGG 0.533096 1_1:+34160674 None:intergenic
TGAAGCAGGTGAAGGAATCA+TGG 0.546790 1_1:-34162422 Msa0019610:CDS
GGAATTCGCTTCCGCCGCGC+CGG 0.550942 1_1:-34160657 Msa0019610:CDS
TGTTGCTCCTGGAAGTAGAA+AGG 0.560699 1_1:-34163590 Msa0019610:intron
TCTTGGCTTCAAATAACAAA+GGG 0.564040 1_1:+34159954 None:intergenic
GTCATCAAGTGAACCGGTGT+TGG 0.565073 1_1:+34159769 None:intergenic
AAAAGAGTAAGGTCTGTCAC+CGG 0.568313 1_1:+34162255 None:intergenic
GAATGTAACTTGCCTCGTGT+TGG 0.578413 1_1:+34162363 None:intergenic
GCTATTGTTATGTTCTCTCC+CGG 0.579155 1_1:-34162274 Msa0019610:CDS
AAAGAGTAAGGTCTGTCACC+GGG 0.580939 1_1:+34162256 None:intergenic
GCTGCAACAATGTCAACACC+TGG 0.584697 1_1:+34162226 None:intergenic
ATCTTGGCTTCAAATAACAA+AGG 0.589396 1_1:+34159953 None:intergenic
CAACAATGTCAACACCTGGA+TGG 0.590000 1_1:+34162230 None:intergenic
TGACCTTCTCATCGTAACTC+CGG 0.594309 1_1:+34160638 None:intergenic
CCAAAACTCATACCATGTCA+AGG 0.598156 1_1:+34159703 None:intergenic
GCTGTGGTCAAAAGGTTACA+AGG 0.600822 1_1:-34159993 Msa0019610:CDS
ATTCTAGTGAGGAGGATGGT+CGG 0.605629 1_1:-34159853 Msa0019610:CDS
GTGTTGCGTGAAGCAGGTGA+AGG 0.611430 1_1:-34162430 Msa0019610:CDS
TTTGGGAAGTTGTGAAGCTG+TGG 0.613943 1_1:-34160009 Msa0019610:CDS
TTCACCGGCGACCACCACAC+CGG 0.615154 1_1:-34160678 Msa0019610:CDS
GCGCCGGAGTTACGATGAGA+AGG 0.623850 1_1:-34160641 Msa0019610:intron
AAGAGACAATTCTAGTGAGG+AGG 0.630210 1_1:-34159861 Msa0019610:CDS
AGGTCACTGGACCCTTGACA+TGG 0.631930 1_1:-34159715 Msa0019610:CDS
GGAAGCGAATTCCGGTGTGG+TGG 0.636666 1_1:+34160667 None:intergenic
CAAAACTCATACCATGTCAA+GGG 0.641999 1_1:+34159704 None:intergenic
GACAATTCTAGTGAGGAGGA+TGG 0.649946 1_1:-34159857 Msa0019610:CDS
ACTGATGCAAGCGATTCCCA+AGG 0.659023 1_1:-34162184 Msa0019610:CDS
TCATCGTAACTCCGGCGCGG+CGG 0.661315 1_1:+34160646 None:intergenic
CTTACTCGGAGAAACTTCAC+CGG 0.661826 1_1:-34160693 Msa0019610:CDS
TGAGGAGGATGGTCGGAACA+GGG 0.661870 1_1:-34159846 Msa0019610:CDS
GGCAAGAGACAATTCTAGTG+AGG 0.663483 1_1:-34159864 Msa0019610:CDS
GGCGGAAGCGAATTCCGGTG+TGG 0.673274 1_1:+34160664 None:intergenic
ATACTGACACAAATTCGTGA+AGG 0.686922 1_1:-34162106 Msa0019610:CDS
CAAAACACGCTATAGGCGAG+TGG 0.691849 1_1:+34159603 None:intergenic
TCGTGAAAGATCCCAACACG+AGG 0.703551 1_1:-34162375 Msa0019610:CDS
GATATAGTAATAGCCAACAC+CGG 0.707697 1_1:-34159782 Msa0019610:CDS
TGGCTCCTTATATATCCTCG+GGG 0.719386 1_1:-34160036 Msa0019610:CDS
TTCTCATCGTAACTCCGGCG+CGG 0.755352 1_1:+34160643 None:intergenic
AACTTCCCAAAAGATCCCCG+AGG 0.762062 1_1:+34160021 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATTAAAAGAGAATT+GGG + chr1_1:34159992-34160011 None:intergenic 10.0%
!! TATTAAAATTAAAAGAGAAT+TGG + chr1_1:34159993-34160012 None:intergenic 10.0%
!! AATTTATAATTAAAATGACA+TGG - chr1_1:34160049-34160068 Msa0019610:intron 10.0%
!! TTAACAATTTCAAAAATAAA+GGG - chr1_1:34160233-34160252 Msa0019610:intron 10.0%
!!! TAAATTCTGTTTTTTATTAA+GGG + chr1_1:34161910-34161929 None:intergenic 10.0%
!!! ATAAATTCTGTTTTTTATTA+AGG + chr1_1:34161911-34161930 None:intergenic 10.0%
!!! TTCTTTAATTTAATCTATTT+TGG + chr1_1:34163636-34163655 None:intergenic 10.0%
!! GAAGGAAAATAAAATTAATT+TGG - chr1_1:34159896-34159915 Msa0019610:CDS 15.0%
!!! AAAATTAATTTGGTGATTTT+TGG - chr1_1:34159906-34159925 Msa0019610:CDS 15.0%
!! TTAAAATTAAAAGAGAATTG+GGG + chr1_1:34159991-34160010 None:intergenic 15.0%
!!! AATTTGTTGACTTTTTAAAT+AGG - chr1_1:34160171-34160190 Msa0019610:intron 15.0%
!!! ATTTGTTGACTTTTTAAATA+GGG - chr1_1:34160172-34160191 Msa0019610:intron 15.0%
!! GTTAACAATTTCAAAAATAA+AGG - chr1_1:34160232-34160251 Msa0019610:intron 15.0%
!! TGACTTAGATAATTAATTAT+AGG + chr1_1:34160277-34160296 None:intergenic 15.0%
!!! AATATCTCATTTTTCAATTA+TGG + chr1_1:34160594-34160613 None:intergenic 15.0%
!!! TTTATCAGTTGATTTTAATT+TGG - chr1_1:34161695-34161714 Msa0019610:intron 15.0%
!!! TTTTTTGGAGTTTTAAAATT+TGG - chr1_1:34162796-34162815 Msa0019610:intron 15.0%
!!! TTCTTTCTTTTTTATTTGAA+AGG - chr1_1:34163610-34163629 Msa0019610:CDS 15.0%
!!! TTTTTGGAATAAAAATGTTG+AGG - chr1_1:34159838-34159857 Msa0019610:CDS 20.0%
!!! TTTTGGAATAAAAATGTTGA+GGG - chr1_1:34159839-34159858 Msa0019610:CDS 20.0%
!! TAAAATTAAAAGAGAATTGG+GGG + chr1_1:34159990-34160009 None:intergenic 20.0%
!!! TTTGTTGACTTTTTAAATAG+GGG - chr1_1:34160173-34160192 Msa0019610:intron 20.0%
!! AGTAATATGATACATATAGT+CGG + chr1_1:34160372-34160391 None:intergenic 20.0%
!! ACAAGAAAAGTAGATATATT+GGG + chr1_1:34160445-34160464 None:intergenic 20.0%
!! AACAAGAAAAGTAGATATAT+TGG + chr1_1:34160446-34160465 None:intergenic 20.0%
!!! AGATTTAATTTTTCCATCTT+GGG + chr1_1:34161029-34161048 None:intergenic 20.0%
!!! TAGATTTAATTTTTCCATCT+TGG + chr1_1:34161030-34161049 None:intergenic 20.0%
!!! AACATATTTTTGTGTAAAAG+TGG - chr1_1:34161582-34161601 Msa0019610:intron 20.0%
!!! ATTTGTTTTTAATGATGATG+TGG + chr1_1:34162056-34162075 None:intergenic 20.0%
!!! TTTGAATTTTGAATTGTAGA+GGG + chr1_1:34162151-34162170 None:intergenic 20.0%
!!! ATTTGAATTTTGAATTGTAG+AGG + chr1_1:34162152-34162171 None:intergenic 20.0%
!! TAATCTATAAATGAATGAGT+GGG + chr1_1:34162455-34162474 None:intergenic 20.0%
!! TCATTTATAGATTACTTACT+CGG - chr1_1:34162461-34162480 Msa0019610:intron 20.0%
!! TAAAACAAAATGAAGAAACA+GGG + chr1_1:34162870-34162889 None:intergenic 20.0%
!! TTAAAACAAAATGAAGAAAC+AGG + chr1_1:34162871-34162890 None:intergenic 20.0%
!!! GTTTCTTCATTTTGTTTTAA+TGG - chr1_1:34162871-34162890 Msa0019610:intron 20.0%
!!! TTTGCTTTGAAAATGTTTAA+TGG - chr1_1:34162907-34162926 Msa0019610:intron 20.0%
! AAAAATGACGTGATATATGT+TGG - chr1_1:34160334-34160353 Msa0019610:intron 25.0%
! AGTAGATATATTGGGTTTAT+AGG + chr1_1:34160437-34160456 None:intergenic 25.0%
! TTTACAATCCCAAAACATTT+AGG - chr1_1:34160510-34160529 Msa0019610:intron 25.0%
! TTACAATCCCAAAACATTTA+GGG - chr1_1:34160511-34160530 Msa0019610:intron 25.0%
!!! TAAACTTGCCTTCTTTTTTT+AGG - chr1_1:34160713-34160732 Msa0019610:intron 25.0%
! TCAATTTGTATGGAAATCAT+CGG - chr1_1:34161609-34161628 Msa0019610:intron 25.0%
!!! TCTGTTTTTTATTAAGGGAA+TGG + chr1_1:34161905-34161924 None:intergenic 25.0%
! TTCAAGACATACAAAAAAGT+CGG - chr1_1:34161930-34161949 Msa0019610:intron 25.0%
! AATTGTGTGAATGCTTAAAA+TGG + chr1_1:34162089-34162108 None:intergenic 25.0%
! GTAATCTATAAATGAATGAG+TGG + chr1_1:34162456-34162475 None:intergenic 25.0%
! AAACAAATTTCATCCCAAAA+TGG + chr1_1:34162723-34162742 None:intergenic 25.0%
!!! TATGCTGTTTCTAAATTCTT+TGG - chr1_1:34162990-34163009 Msa0019610:intron 25.0%
!! TGGAAGTAGAAAGGTATTAA+CGG - chr1_1:34159587-34159606 Msa0019610:CDS 30.0%
! TAACAGGGATTTGGTTATTA+GGG + chr1_1:34159621-34159640 None:intergenic 30.0%
TTCTTTCTCTTCTTGTAACA+GGG + chr1_1:34159636-34159655 None:intergenic 30.0%
! ATAGTGTGTCATTAATGTGT+TGG + chr1_1:34159702-34159721 None:intergenic 30.0%
! GGCAATGTGATCTTTTAATA+CGG + chr1_1:34159771-34159790 None:intergenic 30.0%
!!! TATTGTCGTGCTTGTTTTTT+TGG - chr1_1:34159822-34159841 Msa0019610:CDS 30.0%
GAATAAAAATGTTGAGGGAT+GGG - chr1_1:34159844-34159863 Msa0019610:CDS 30.0%
!!! ATTTGGTGATTTTTGGTGTT+AGG - chr1_1:34159913-34159932 Msa0019610:CDS 30.0%
!!! TTTGGTGATTTTTGGTGTTA+GGG - chr1_1:34159914-34159933 Msa0019610:CDS 30.0%
TGACATGCTTATTAATGACA+TGG + chr1_1:34160122-34160141 None:intergenic 30.0%
TACAATCCCAAAACATTTAG+GGG - chr1_1:34160512-34160531 Msa0019610:intron 30.0%
! AAATTGCCCCTAAATGTTTT+GGG + chr1_1:34160521-34160540 None:intergenic 30.0%
! AAAATTGCCCCTAAATGTTT+TGG + chr1_1:34160522-34160541 None:intergenic 30.0%
! TATGTAGACATTCTGGAAAA+AGG + chr1_1:34160643-34160662 None:intergenic 30.0%
TCCAGAATGTCTACATAAAT+AGG - chr1_1:34160646-34160665 Msa0019610:CDS 30.0%
CCAGAATGTCTACATAAATA+GGG - chr1_1:34160647-34160666 Msa0019610:CDS 30.0%
CAGAATGTCTACATAAATAG+GGG - chr1_1:34160648-34160667 Msa0019610:CDS 30.0%
! AATGAATTGTCCATTTTGTG+CGG - chr1_1:34160861-34160880 Msa0019610:intron 30.0%
ATACAAAGAGCTTCAAGATT+GGG - chr1_1:34161158-34161177 Msa0019610:intron 30.0%
AATATGGAAAAAGCAAGTTG+TGG - chr1_1:34161559-34161578 Msa0019610:intron 30.0%
AAGTGGAATGTCAATTTGTA+TGG - chr1_1:34161599-34161618 Msa0019610:intron 30.0%
!! TCGGATTTGTTATTCTTCAT+TGG - chr1_1:34161628-34161647 Msa0019610:intron 30.0%
GGGCTTGTATATTATTAAGA+TGG + chr1_1:34161980-34161999 None:intergenic 30.0%
TTGGGATGCTAAAAAATGTA+GGG + chr1_1:34162002-34162021 None:intergenic 30.0%
ATTGGGATGCTAAAAAATGT+AGG + chr1_1:34162003-34162022 None:intergenic 30.0%
AGAATTTGACACATTGGATT+GGG + chr1_1:34162020-34162039 None:intergenic 30.0%
! TTAATGATGATGTGGCATTA+GGG + chr1_1:34162048-34162067 None:intergenic 30.0%
! TTTAATGATGATGTGGCATT+AGG + chr1_1:34162049-34162068 None:intergenic 30.0%
AAAACGTAGGATGAAAAGAA+TGG + chr1_1:34162192-34162211 None:intergenic 30.0%
AGGAAAAAAGGAAAGAAGTT+TGG + chr1_1:34162261-34162280 None:intergenic 30.0%
AGAGAAAAAGTGAGGAAAAA+AGG + chr1_1:34162273-34162292 None:intergenic 30.0%
GAAAGAAAGTAGAGGAAAAA+GGG + chr1_1:34162355-34162374 None:intergenic 30.0%
AGAAAGAAAGTAGAGGAAAA+AGG + chr1_1:34162356-34162375 None:intergenic 30.0%
GAAATGAAGAAAGAAAGTAG+AGG + chr1_1:34162363-34162382 None:intergenic 30.0%
TGCGACAAAGAAGAAAAATT+CGG + chr1_1:34162565-34162584 None:intergenic 30.0%
GTTCTTTCAAGAACAAATTG+AGG - chr1_1:34162627-34162646 Msa0019610:intron 30.0%
TTGAAATTCGAATTTCACCT+TGG + chr1_1:34162664-34162683 None:intergenic 30.0%
!! CTGAGAAAAAAATGGATTAG+AGG + chr1_1:34162688-34162707 None:intergenic 30.0%
TTTCGGATCTGAGAAAAAAA+TGG + chr1_1:34162696-34162715 None:intergenic 30.0%
GAACCATATCAATGATTTGA+GGG + chr1_1:34162775-34162794 None:intergenic 30.0%
!!! CATTGATATGGTTCGTTTTT+TGG - chr1_1:34162781-34162800 Msa0019610:intron 30.0%
TCTTGGCTTCAAATAACAAA+GGG + chr1_1:34163217-34163236 None:intergenic 30.0%
ATCTTGGCTTCAAATAACAA+AGG + chr1_1:34163218-34163237 None:intergenic 30.0%
TCAACCCAAACAACAATTAT+GGG + chr1_1:34163257-34163276 None:intergenic 30.0%
ATCAACCCAAACAACAATTA+TGG + chr1_1:34163258-34163277 None:intergenic 30.0%
! TTACTCCTTTTAACATCAAG+CGG + chr1_1:34163362-34163381 None:intergenic 30.0%
TGAACAATTTCAGAACGTAT+TGG - chr1_1:34163427-34163446 Msa0019610:intron 30.0%
! AGTTGTTGTTCTTTGTATGA+AGG - chr1_1:34163532-34163551 Msa0019610:intron 30.0%
ATGAATGAATGAAGCTCGTT+GGG + chr1_1:34159558-34159577 None:intergenic 35.0%
AATGAATGAATGAAGCTCGT+TGG + chr1_1:34159559-34159578 None:intergenic 35.0%
GTTAATACCTTTCTACTTCC+AGG + chr1_1:34159588-34159607 None:intergenic 35.0%
! GTAACAGGGATTTGGTTATT+AGG + chr1_1:34159622-34159641 None:intergenic 35.0%
CTTCTTTCTCTTCTTGTAAC+AGG + chr1_1:34159637-34159656 None:intergenic 35.0%
CTGTTACAAGAAGAGAAAGA+AGG - chr1_1:34159635-34159654 Msa0019610:CDS 35.0%
TTGAAAATGCTTATGGGTTC+TGG + chr1_1:34159744-34159763 None:intergenic 35.0%
!! GGTGCTTTGAAAATGCTTAT+GGG + chr1_1:34159750-34159769 None:intergenic 35.0%
GGAATAAAAATGTTGAGGGA+TGG - chr1_1:34159843-34159862 Msa0019610:CDS 35.0%
TTGAAGAGAAACGATGCTAA+AGG - chr1_1:34159871-34159890 Msa0019610:CDS 35.0%
TGAAGAGAAACGATGCTAAA+GGG - chr1_1:34159872-34159891 Msa0019610:CDS 35.0%
!!! TTGGTGATTTTTGGTGTTAG+GGG - chr1_1:34159915-34159934 Msa0019610:CDS 35.0%
TCAACAAGTGGCAATCAATT+TGG - chr1_1:34159942-34159961 Msa0019610:CDS 35.0%
CAACAAGTGGCAATCAATTT+GGG - chr1_1:34159943-34159962 Msa0019610:CDS 35.0%
AACAAGTGGCAATCAATTTG+GGG - chr1_1:34159944-34159963 Msa0019610:CDS 35.0%
! AAAGTGCTAATACGATGGAA+TGG + chr1_1:34160308-34160327 None:intergenic 35.0%
! TAAGCAAAGTGCTAATACGA+TGG + chr1_1:34160313-34160332 None:intergenic 35.0%
AATGACGTGATATATGTTGG+CGG - chr1_1:34160337-34160356 Msa0019610:intron 35.0%
CCCTATTTATGTAGACATTC+TGG + chr1_1:34160650-34160669 None:intergenic 35.0%
!!! ACTTGCCTTCTTTTTTTAGG+AGG - chr1_1:34160716-34160735 Msa0019610:intron 35.0%
CAACACCTCCTAAAAAAAGA+AGG + chr1_1:34160724-34160743 None:intergenic 35.0%
! ATTAGAAGATGGGTTTCCTT+GGG + chr1_1:34161003-34161022 None:intergenic 35.0%
ATACTGACACAAATTCGTGA+AGG - chr1_1:34161062-34161081 Msa0019610:intron 35.0%
AATTCGTGAAGGTGAAAAGT+AGG - chr1_1:34161073-34161092 Msa0019610:intron 35.0%
CATACAAAGAGCTTCAAGAT+TGG - chr1_1:34161157-34161176 Msa0019610:intron 35.0%
ATATATGATGCTTCTTGCTC+AGG - chr1_1:34161215-34161234 Msa0019610:intron 35.0%
TAAGAGCGAAATACGCAAAT+AGG - chr1_1:34161253-34161272 Msa0019610:intron 35.0%
ATGTCTCTCTTAAACGTTGT+TGG + chr1_1:34161394-34161413 None:intergenic 35.0%
TAAACTTGACGTCTCATTAC+TGG - chr1_1:34161488-34161507 Msa0019610:intron 35.0%
AAGACATACAAAAAAGTCGG+TGG - chr1_1:34161933-34161952 Msa0019610:intron 35.0%
TGGGATGCTAAAAAATGTAG+GGG + chr1_1:34162001-34162020 None:intergenic 35.0%
GAGAATTTGACACATTGGAT+TGG + chr1_1:34162021-34162040 None:intergenic 35.0%
! TAATGATGATGTGGCATTAG+GGG + chr1_1:34162047-34162066 None:intergenic 35.0%
GTTGGCATAAGATAAAACGT+AGG + chr1_1:34162205-34162224 None:intergenic 35.0%
AGGAAGATAGAGAAAAAGTG+AGG + chr1_1:34162281-34162300 None:intergenic 35.0%
!!! GGTTTTATTTTTGTGTGAGG+CGG + chr1_1:34162399-34162418 None:intergenic 35.0%
!!! GGTGGTTTTATTTTTGTGTG+AGG + chr1_1:34162402-34162421 None:intergenic 35.0%
! GAGTTAATTCGTTTTCGTAC+AGG - chr1_1:34162605-34162624 Msa0019610:intron 35.0%
TTGAGGAAGAAGAATAACCA+AGG - chr1_1:34162644-34162663 Msa0019610:intron 35.0%
! AGATCCGAAAATAGCCATTT+TGG - chr1_1:34162706-34162725 Msa0019610:intron 35.0%
!! GATCCGAAAATAGCCATTTT+GGG - chr1_1:34162707-34162726 Msa0019610:intron 35.0%
!! CATCCCAAAATGGCTATTTT+CGG + chr1_1:34162713-34162732 None:intergenic 35.0%
CATCCCTCAAATCATTGATA+TGG - chr1_1:34162769-34162788 Msa0019610:intron 35.0%
CGAACCATATCAATGATTTG+AGG + chr1_1:34162776-34162795 None:intergenic 35.0%
!!! TGCTGGTTGTTTTAGATTGT+TGG - chr1_1:34163112-34163131 Msa0019610:intron 35.0%
!! GAAGCCCATAATTGTTGTTT+GGG - chr1_1:34163250-34163269 Msa0019610:intron 35.0%
AGATTCCGCTTGATGTTAAA+AGG - chr1_1:34163354-34163373 Msa0019610:intron 35.0%
GATATAGTAATAGCCAACAC+CGG - chr1_1:34163386-34163405 Msa0019610:intron 35.0%
ATTCAAGTCATCAAGTGAAC+CGG + chr1_1:34163408-34163427 None:intergenic 35.0%
!! ATTTCAGAACGTATTGGTTC+AGG - chr1_1:34163433-34163452 Msa0019610:intron 35.0%
CAAAACTCATACCATGTCAA+GGG + chr1_1:34163467-34163486 None:intergenic 35.0%
CATTCATTCATTGTTGCTCC+TGG - chr1_1:34159567-34159586 Msa0019610:CDS 40.0%
CTCTTCTTGTAACAGGGATT+TGG + chr1_1:34159630-34159649 None:intergenic 40.0%
ACAAGAAGAGAAAGAAGGCT+TGG - chr1_1:34159640-34159659 Msa0019610:CDS 40.0%
CAAGAAGAGAAAGAAGGCTT+GGG - chr1_1:34159641-34159660 Msa0019610:CDS 40.0%
AGAAAGAAGGCTTGGGAAAT+AGG - chr1_1:34159648-34159667 Msa0019610:CDS 40.0%
!! CGGTGCTTTGAAAATGCTTA+TGG + chr1_1:34159751-34159770 None:intergenic 40.0%
AAAAATGTTGAGGGATGGGA+AGG - chr1_1:34159848-34159867 Msa0019610:CDS 40.0%
! AATGTAACTTGCCTCGTGTT+GGG + chr1_1:34160807-34160826 None:intergenic 40.0%
!! TACATTCTCAAAGCGTCGAA+CGG - chr1_1:34160821-34160840 Msa0019610:intron 40.0%
GCTATTGTTATGTTCTCTCC+CGG - chr1_1:34160894-34160913 Msa0019610:intron 40.0%
AAAAGAGTAAGGTCTGTCAC+CGG + chr1_1:34160916-34160935 None:intergenic 40.0%
AGTCTCTTGTTGGAGATACT+TGG + chr1_1:34160967-34160986 None:intergenic 40.0%
! CATTAGAAGATGGGTTTCCT+TGG + chr1_1:34161004-34161023 None:intergenic 40.0%
!! TCTTGGGAGCATTAGAAGAT+GGG + chr1_1:34161013-34161032 None:intergenic 40.0%
!! ATCTTGGGAGCATTAGAAGA+TGG + chr1_1:34161014-34161033 None:intergenic 40.0%
ATCTTCTAATGCTCCCAAGA+TGG - chr1_1:34161013-34161032 Msa0019610:intron 40.0%
GGGATGCTAAAAAATGTAGG+GGG + chr1_1:34162000-34162019 None:intergenic 40.0%
GGGTTGAGAATTTGACACAT+TGG + chr1_1:34162026-34162045 None:intergenic 40.0%
! AATGATGATGTGGCATTAGG+GGG + chr1_1:34162046-34162065 None:intergenic 40.0%
GAGTAGAAAGTGATGTTGGT+TGG + chr1_1:34162223-34162242 None:intergenic 40.0%
GAGAGAGTAGAAAGTGATGT+TGG + chr1_1:34162227-34162246 None:intergenic 40.0%
AGGAAAAAGGGTTTCATGGA+GGG + chr1_1:34162343-34162362 None:intergenic 40.0%
GTAGAGGAAAAAGGGTTTCA+TGG + chr1_1:34162347-34162366 None:intergenic 40.0%
TGAGGAGAGGAATATTATGG+TGG + chr1_1:34162420-34162439 None:intergenic 40.0%
GGATGAGGAGAGGAATATTA+TGG + chr1_1:34162423-34162442 None:intergenic 40.0%
!!! TGAATGAGTGGGTTTTGAAG+AGG + chr1_1:34162444-34162463 None:intergenic 40.0%
GAAAGCAACAGATCCATGAT+TGG + chr1_1:34162845-34162864 None:intergenic 40.0%
!!! TTTTGAAGTTTCTGCTGTGC+TGG - chr1_1:34163095-34163114 Msa0019610:intron 40.0%
! GTTGGCTCCTTATATATCCT+CGG - chr1_1:34163130-34163149 Msa0019610:intron 40.0%
TTGGCTCCTTATATATCCTC+GGG - chr1_1:34163131-34163150 Msa0019610:intron 40.0%
AAGATCCCCGAGGATATATA+AGG + chr1_1:34163140-34163159 None:intergenic 40.0%
! ATATATCCTCGGGGATCTTT+TGG - chr1_1:34163141-34163160 Msa0019610:intron 40.0%
! TATATCCTCGGGGATCTTTT+GGG - chr1_1:34163142-34163161 Msa0019610:intron 40.0%
CTTCGTGAACTTGTCAATCT+TGG + chr1_1:34163234-34163253 None:intergenic 40.0%
! CGAAGCCCATAATTGTTGTT+TGG - chr1_1:34163249-34163268 Msa0019610:intron 40.0%
AGTCTCTGAATCTGTGTTTC+AGG + chr1_1:34163281-34163300 None:intergenic 40.0%
AACACAGATTCAGAGACTCT+TGG - chr1_1:34163283-34163302 Msa0019610:intron 40.0%
AAGAGACAATTCTAGTGAGG+AGG - chr1_1:34163307-34163326 Msa0019610:intron 40.0%
CCAAAACTCATACCATGTCA+AGG + chr1_1:34163468-34163487 None:intergenic 40.0%
! CCTTGACATGGTATGAGTTT+TGG - chr1_1:34163465-34163484 Msa0019610:intron 40.0%
CACTTCACAAAACACGCTAT+AGG + chr1_1:34163575-34163594 None:intergenic 40.0%
TGTTGCTCCTGGAAGTAGAA+AGG - chr1_1:34159578-34159597 Msa0019610:CDS 45.0%
GAAACGATGCTAAAGGGAGA+AGG - chr1_1:34159878-34159897 Msa0019610:CDS 45.0%
GTTAGGGGTTCTTCAACAAG+TGG - chr1_1:34159930-34159949 Msa0019610:CDS 45.0%
AGCATGTCATGTCATCCAGA+AGG - chr1_1:34160133-34160152 Msa0019610:intron 45.0%
GCATGTCATGTCATCCAGAA+GGG - chr1_1:34160134-34160153 Msa0019610:intron 45.0%
CATGTCATGTCATCCAGAAG+GGG - chr1_1:34160135-34160154 Msa0019610:intron 45.0%
TGAAGCAGGTGAAGGAATCA+TGG - chr1_1:34160746-34160765 Msa0019610:intron 45.0%
! GAATGTAACTTGCCTCGTGT+TGG + chr1_1:34160808-34160827 None:intergenic 45.0%
!! ACATTCTCAAAGCGTCGAAC+GGG - chr1_1:34160822-34160841 Msa0019610:intron 45.0%
AAAGAGTAAGGTCTGTCACC+GGG + chr1_1:34160915-34160934 None:intergenic 45.0%
! GGTGACAGACCTTACTCTTT+TGG - chr1_1:34160915-34160934 Msa0019610:intron 45.0%
CAACAATGTCAACACCTGGA+TGG + chr1_1:34160941-34160960 None:intergenic 45.0%
!! TGTCTCTCTAAGCCTTGTTG+TGG - chr1_1:34161364-34161383 Msa0019610:intron 45.0%
GTTGTTGGATGTCCACAACA+AGG + chr1_1:34161379-34161398 None:intergenic 45.0%
! TGATAAGAGAGAGCGCAAGA+GGG + chr1_1:34161659-34161678 None:intergenic 45.0%
CATACAAAAAAGTCGGTGGC+TGG - chr1_1:34161937-34161956 Msa0019610:intron 45.0%
GAGGAAAAAGGGTTTCATGG+AGG + chr1_1:34162344-34162363 None:intergenic 45.0%
!!! TTATTTTTGTGTGAGGCGGC+AGG + chr1_1:34162395-34162414 None:intergenic 45.0%
!!! GTTTTGAAGAGGATGAGGAG+AGG + chr1_1:34162433-34162452 None:intergenic 45.0%
!!! AGTGGGTTTTGAAGAGGATG+AGG + chr1_1:34162438-34162457 None:intergenic 45.0%
CTTACTCGGAGAAACTTCAC+CGG - chr1_1:34162475-34162494 Msa0019610:intron 45.0%
TGACCTTCTCATCGTAACTC+CGG + chr1_1:34162533-34162552 None:intergenic 45.0%
TTCACTGAGACCTCCAATCA+TGG - chr1_1:34162829-34162848 Msa0019610:intron 45.0%
AGCAACAGATCCATGATTGG+AGG + chr1_1:34162842-34162861 None:intergenic 45.0%
TGGCTCCTTATATATCCTCG+GGG - chr1_1:34163132-34163151 Msa0019610:intron 45.0%
TTTGGGAAGTTGTGAAGCTG+TGG - chr1_1:34163159-34163178 Msa0019610:intron 45.0%
GTTGTGAAGCTGTGGTCAAA+AGG - chr1_1:34163167-34163186 Msa0019610:intron 45.0%
GCTGTGGTCAAAAGGTTACA+AGG - chr1_1:34163175-34163194 Msa0019610:intron 45.0%
GGCAAGAGACAATTCTAGTG+AGG - chr1_1:34163304-34163323 Msa0019610:intron 45.0%
GACAATTCTAGTGAGGAGGA+TGG - chr1_1:34163311-34163330 Msa0019610:intron 45.0%
ATTCTAGTGAGGAGGATGGT+CGG - chr1_1:34163315-34163334 Msa0019610:intron 45.0%
!! AACGTATTGGTTCAGGTCAC+TGG - chr1_1:34163440-34163459 Msa0019610:intron 45.0%
!! GGTATGAGTTTTGGCGTTCT+AGG - chr1_1:34163474-34163493 Msa0019610:intron 45.0%
!!! ACTTTTATTATATAATAATT+TGG + chr1_1:34159792-34159811 None:intergenic 5.0%
!! ATAAAATCTTAATTTAAATA+TGG - chr1_1:34161543-34161562 Msa0019610:intron 5.0%
!! AAAAAAAATTAAAAATTGAA+AGG + chr1_1:34161756-34161775 None:intergenic 5.0%
!! AGAAATAAAATAAATATTTA+TGG - chr1_1:34161813-34161832 Msa0019610:intron 5.0%
TCATGTCATCCAGAAGGGGA+GGG - chr1_1:34160139-34160158 Msa0019610:intron 50.0%
! TTTTTGTCTCCCTCCCCTTC+TGG + chr1_1:34160151-34160170 None:intergenic 50.0%
TCGTGAAAGATCCCAACACG+AGG - chr1_1:34160793-34160812 Msa0019610:intron 50.0%
GACTTCTGCTCCGCACAAAA+TGG + chr1_1:34160874-34160893 None:intergenic 50.0%
CCTGGATGGCCAAAAGAGTA+AGG + chr1_1:34160927-34160946 None:intergenic 50.0%
! CCTTACTCTTTTGGCCATCC+AGG - chr1_1:34160924-34160943 Msa0019610:intron 50.0%
GCTGCAACAATGTCAACACC+TGG + chr1_1:34160945-34160964 None:intergenic 50.0%
CGCTTGCATCAGTCTCTTGT+TGG + chr1_1:34160977-34160996 None:intergenic 50.0%
ACTGATGCAAGCGATTCCCA+AGG - chr1_1:34160984-34161003 Msa0019610:intron 50.0%
TTCGCTCTTATTCCCACCAC+TGG + chr1_1:34161243-34161262 None:intergenic 50.0%
! GTGATAAGAGAGAGCGCAAG+AGG + chr1_1:34161660-34161679 None:intergenic 50.0%
AGAGTGAGAGGAAGAGGAAG+AGG + chr1_1:34162301-34162320 None:intergenic 50.0%
GGTTTACGTGAGAGAGTGAG+AGG + chr1_1:34162313-34162332 None:intergenic 50.0%
AACTTCCCAAAAGATCCCCG+AGG + chr1_1:34163150-34163169 None:intergenic 50.0%
GTCATCAAGTGAACCGGTGT+TGG + chr1_1:34163402-34163421 None:intergenic 50.0%
!! TGAGTTTTGGCGTTCTAGGC+AGG - chr1_1:34163478-34163497 Msa0019610:intron 50.0%
!! GAGTTTTGGCGTTCTAGGCA+GGG - chr1_1:34163479-34163498 Msa0019610:intron 50.0%
CAAAACACGCTATAGGCGAG+TGG + chr1_1:34163568-34163587 None:intergenic 50.0%
GTCATGTCATCCAGAAGGGG+AGG - chr1_1:34160138-34160157 Msa0019610:intron 55.0%
!! TAGGAGGTGTTGCGTGAAGC+AGG - chr1_1:34160732-34160751 Msa0019610:intron 55.0%
GTGTTGCGTGAAGCAGGTGA+AGG - chr1_1:34160738-34160757 Msa0019610:intron 55.0%
GCTTCTTGCTCAGGAACCAG+TGG - chr1_1:34161224-34161243 Msa0019610:intron 55.0%
TCTTGCTCAGGAACCAGTGG+TGG - chr1_1:34161227-34161246 Msa0019610:intron 55.0%
CTTGCTCAGGAACCAGTGGT+GGG - chr1_1:34161228-34161247 Msa0019610:intron 55.0%
CGTGAGAGAGTGAGAGGAAG+AGG + chr1_1:34162307-34162326 None:intergenic 55.0%
GGTTTCATGGAGGGAGAGTG+AGG + chr1_1:34162334-34162353 None:intergenic 55.0%
TTCTCATCGTAACTCCGGCG+CGG + chr1_1:34162528-34162547 None:intergenic 55.0%
TGAGGAGGATGGTCGGAACA+GGG - chr1_1:34163322-34163341 Msa0019610:intron 55.0%
AGGTCACTGGACCCTTGACA+TGG - chr1_1:34163453-34163472 Msa0019610:intron 55.0%
! GTGAGGCGGCAGGAGTTGAT+CGG + chr1_1:34162385-34162404 None:intergenic 60.0%
AATTCCGGTGTGGTGGTCGC+CGG + chr1_1:34162497-34162516 None:intergenic 60.0%
GGAAGCGAATTCCGGTGTGG+TGG + chr1_1:34162504-34162523 None:intergenic 60.0%
GCGCCGGAGTTACGATGAGA+AGG - chr1_1:34162527-34162546 Msa0019610:intron 60.0%
GTGAGGAGGATGGTCGGAAC+AGG - chr1_1:34163321-34163340 Msa0019610:intron 60.0%
TTCACCGGCGACCACCACAC+CGG - chr1_1:34162490-34162509 Msa0019610:intron 65.0%
GGCGGAAGCGAATTCCGGTG+TGG + chr1_1:34162507-34162526 None:intergenic 65.0%
TCATCGTAACTCCGGCGCGG+CGG + chr1_1:34162525-34162544 None:intergenic 65.0%
GGCGCGGCGGAAGCGAATTC+CGG + chr1_1:34162512-34162531 None:intergenic 70.0%
GGAATTCGCTTCCGCCGCGC+CGG - chr1_1:34162511-34162530 Msa0019610:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 34159528 34163662 34159528 ID=Msa0019610;Name=Msa0019610
chr1_1 mRNA 34159528 34163662 34159528 ID=Msa0019610-mRNA-1;Parent=Msa0019610;Name=Msa0019610-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0.25|0.75|1|1|4|34|335
chr1_1 exon 34159528 34160063 34159528 ID=Msa0019610-mRNA-1:exon:10856;Parent=Msa0019610-mRNA-1
chr1_1 exon 34160642 34160719 34160642 ID=Msa0019610-mRNA-1:exon:10855;Parent=Msa0019610-mRNA-1
chr1_1 exon 34162100 34162455 34162100 ID=Msa0019610-mRNA-1:exon:10854;Parent=Msa0019610-mRNA-1
chr1_1 exon 34163591 34163662 34163591 ID=Msa0019610-mRNA-1:exon:10853;Parent=Msa0019610-mRNA-1
chr1_1 CDS 34163591 34163662 34163591 ID=Msa0019610-mRNA-1:cds;Parent=Msa0019610-mRNA-1
chr1_1 CDS 34162100 34162455 34162100 ID=Msa0019610-mRNA-1:cds;Parent=Msa0019610-mRNA-1
chr1_1 CDS 34160642 34160719 34160642 ID=Msa0019610-mRNA-1:cds;Parent=Msa0019610-mRNA-1
chr1_1 CDS 34159562 34160063 34159562 ID=Msa0019610-mRNA-1:cds;Parent=Msa0019610-mRNA-1
chr1_1 three_prime_UTR 34159528 34159561 34159528 ID=Msa0019610-mRNA-1:three_prime_utr;Parent=Msa0019610-mRNA-1
Gene Sequence

>Msa0019610

ATGTCACTATTATCATTTAGCTACTTACCCAACGAGCTTCATTCATTCATTGTTGCTCCTGGAAGTAGAAAGGAGGTGTTGCGTGAAGCAGGTGAAGGAATCATGGTTCGTCGTAAAATTGAGATTGAGATCGTGAAAGATCCCAACACGAGGCAAGTTACATTCTCAAAGCGTCGAACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATTTTGTGCGGAGCAGAAGTCGCTATTGTTATGTTCTCTCCCGGTGACAGACCTTACTCTTTTGGCCATCCAGGTGTTGACATTGTTGCAGCCAAGTATCTCCAACAAGAGACTGATGCAAGCGATTCCCAAGGAAACCCATCTTCTAATGCTCCCAAGATGGAAAAATTAAATCTAGAACTTGCTGAGATACTGACACAAATTCGTGAAGGTGAAAAATTACTTACTCGGAGAAACTTCACCGGCGACCACCACACCGGAATTCGCTTCCGCCGCGCCGGAGTTACGATGAGAAGATTGTTGGCTCCTTATATATCCTCGGGGATCTTTTGGGAAGTTGTGAAGCTGTGGTCAAAAGGTTACAAGGTCATTGTTCTCGACGTCCCTTTGTTATTTGAAGCCAAGATTGACAAGTTCACGAAGCCCATAATTGTTGTTTGGGTTGATCCTGAAACACAGATTCAGAGACTCTTGGCAAGAGACAATTCTAGTGAGGAGGATGGTCGGAACAGGGTTAATGCTCAGATTCCGCTTGATGTTAAAAGGAGTAAAGCTGATATAGTAATAGCCAACACCGGTTCACTTGATGACTTGAATGAACAATTTCAGAACGTATTGGTTCAGGTCACTGGACCCTTGACATGGTATGAGTTTTGGCGTTCTAGGCAGGGAGTCTTGATTATTCTTGCGTCACTTACATCAGTTGTTGTTCTTTGTATGAAGGCATTTAACAACCACTCGCCTATAGCGTGTTTTGTGAAGTGCTTTACTGTATCTATTTCTTTCTTTTTTATTTGA
Protein sequence

>Msa0019610

MSLLSFSYLPNELHSFIVAPGSRKEVLREAGEGIMVRRKIEIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVMFSPGDRPYSFGHPGVDIVAAKYLQQETDASDSQGNPSSNAPKMEKLNLELAEILTQIREGEKLLTRRNFTGDHHTGIRFRRAGVTMRRLLAPYISSGIFWEVVKLWSKGYKVIVLDVPLLFEAKIDKFTKPIIVVWVDPETQIQRLLARDNSSEEDGRNRVNAQIPLDVKRSKADIVIANTGSLDDLNEQFQNVLVQVTGPLTWYEFWRSRQGVLIILASLTSVVVLCMKAFNNHSPIACFVKCFTVSISFFFI*