Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020000 | KEH41414.1 | 93.814 | 194 | 10 | 1 | 1 | 194 | 1 | 192 | 5.00e-128 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020000 | sp|Q69XV0|BZP50_ORYSJ | 39.894 | 188 | 84 | 3 | 39 | 204 | 60 | 240 | 6.19e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020000 | A0A072VHD6 | 93.814 | 194 | 10 | 1 | 1 | 194 | 1 | 192 | 2.39e-128 | 372 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0020000 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020000 | MtrunA17_Chr1g0171291 | 96.154 | 182 | 7 | 0 | 1 | 182 | 1 | 182 | 6.49e-128 | 363 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020000 | AT1G42990.1 | 56.250 | 64 | 27 | 1 | 120 | 182 | 155 | 218 | 3.93e-14 | 71.2 |
Find 84 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTTCCCTGCTATGGTTCC+TGG | 0.201475 | 1_1:+34955321 | Msa0020000:CDS |
| AACTTCTTCTTCGTAATTTC+TGG | 0.237813 | 1_1:+34953223 | Msa0020000:five_prime_UTR |
| GAGAGATTCGAAATCGATTT+GGG | 0.252626 | 1_1:-34953267 | None:intergenic |
| TACATAAAGCTCACTAATTA+TGG | 0.279311 | 1_1:-34954785 | None:intergenic |
| CTAAGAAGGGTGGCTCTAAA+AGG | 0.288472 | 1_1:+34955427 | Msa0020000:CDS |
| CAAACATGTTGGGATGCTTT+TGG | 0.296968 | 1_1:+34955711 | Msa0020000:three_prime_UTR |
| AGAGAGATTCGAAATCGATT+TGG | 0.334822 | 1_1:-34953268 | None:intergenic |
| TTCTTCCTATTTGAAACATA+TGG | 0.336637 | 1_1:+34955777 | Msa0020000:three_prime_UTR |
| CAAAAGCATCCCAACATGTT+TGG | 0.338640 | 1_1:-34955710 | None:intergenic |
| GGAGTCTGCTGTGCTCTTGT+TGG | 0.367032 | 1_1:+34954029 | Msa0020000:CDS |
| AACTTCCATATGTTTCAAAT+AGG | 0.377154 | 1_1:-34955782 | None:intergenic |
| GGAACCTCTTGAGGAGTTAC+TGG | 0.381189 | 1_1:-34953530 | None:intergenic |
| TTTGCAGAATCCCTGCTGTT+GGG | 0.403472 | 1_1:+34955301 | Msa0020000:intron |
| TTGCAATCGCGTGGTGGCTT+TGG | 0.414223 | 1_1:+34953988 | Msa0020000:CDS |
| TGCTGTTGGGTTCCCTGCTA+TGG | 0.415075 | 1_1:+34955314 | Msa0020000:CDS |
| GAATATCTTCGAGAAACTTA+TGG | 0.427802 | 1_1:-34953442 | None:intergenic |
| CCTCGACCCGATCCCTCAAT+CGG | 0.430109 | 1_1:+34953466 | Msa0020000:CDS |
| GGTTCCCTGCTATGGTTCCT+GGG | 0.440801 | 1_1:+34955322 | Msa0020000:CDS |
| GAGTCTGCTGTGCTCTTGTT+GGG | 0.447976 | 1_1:+34954030 | Msa0020000:CDS |
| TCATCTTCGTTCTTGAAGCT+TGG | 0.448828 | 1_1:-34955513 | None:intergenic |
| TGATCATCCGATTGAGGGAT+CGG | 0.459847 | 1_1:-34953473 | None:intergenic |
| TGATGCCCAGGAACCATAGC+AGG | 0.462353 | 1_1:-34955327 | None:intergenic |
| AGTGAGCTTTATGTATGTAC+TGG | 0.479622 | 1_1:+34954793 | Msa0020000:CDS |
| TGGCGTTGATTGTGTTGTCT+TGG | 0.484926 | 1_1:-34953122 | None:intergenic |
| AAAGAAAATGCAAAGAAAGA+AGG | 0.485287 | 1_1:-34955597 | None:intergenic |
| TCTTTACAAACGATTGAGTC+AGG | 0.488376 | 1_1:-34955480 | None:intergenic |
| TGAAGGGGAATGCAGAAGAC+TGG | 0.491226 | 1_1:+34953915 | Msa0020000:CDS |
| AGCAGACTCCTGCATGGTCA+TGG | 0.499805 | 1_1:-34954016 | None:intergenic |
| AATATGCAAACCAAACATGT+TGG | 0.501452 | 1_1:+34955700 | Msa0020000:three_prime_UTR |
| ATATGCAAACCAAACATGTT+GGG | 0.502568 | 1_1:+34955701 | Msa0020000:three_prime_UTR |
| AACCTTGATCATCCGATTGA+GGG | 0.507174 | 1_1:-34953478 | None:intergenic |
| GGGAATTGCGTCGTCATCAT+CGG | 0.507358 | 1_1:+34953409 | Msa0020000:CDS |
| ATGCTGAGAACCATGCTTTG+CGG | 0.510527 | 1_1:+34953959 | Msa0020000:CDS |
| AAACCTTGATCATCCGATTG+AGG | 0.512112 | 1_1:-34953479 | None:intergenic |
| ATAATATTTCACCTTCTCAC+TGG | 0.512804 | 1_1:+34954755 | Msa0020000:CDS |
| CCGATTGAGGGATCGGGTCG+AGG | 0.513783 | 1_1:-34953466 | None:intergenic |
| CTGTTGTTAGCCACAGTGGA+AGG | 0.514860 | 1_1:-34955369 | None:intergenic |
| TGGAACACAAAGGTCTAAGA+AGG | 0.519321 | 1_1:+34955413 | Msa0020000:CDS |
| TGGTGCTCCCATGACCATGC+AGG | 0.523079 | 1_1:+34954008 | Msa0020000:CDS |
| TCTTCTCATGTCTGATGCTG+AGG | 0.542387 | 1_1:+34953388 | Msa0020000:CDS |
| AGGAGTTACTGGATCAACTC+TGG | 0.544068 | 1_1:-34953519 | None:intergenic |
| TTCGAGAAACTTATGGTAGT+CGG | 0.545198 | 1_1:-34953435 | None:intergenic |
| GTTGTTAGCCACAGTGGAAG+GGG | 0.545341 | 1_1:-34955367 | None:intergenic |
| ATCCCTCAATCGGATGATCA+AGG | 0.545906 | 1_1:+34953476 | Msa0020000:CDS |
| TCAACTCTGGCTTCATCAGA+AGG | 0.547608 | 1_1:-34953506 | None:intergenic |
| ATAGCAGGGAACCCAACAGC+AGG | 0.548068 | 1_1:-34955312 | None:intergenic |
| CTTTGTTTGCAATCGCGTGG+TGG | 0.550397 | 1_1:+34953982 | Msa0020000:CDS |
| TAAGAAGGGTGGCTCTAAAA+GGG | 0.555483 | 1_1:+34955428 | Msa0020000:CDS |
| TTCGTAATTTCTGGTTACCA+TGG | 0.556887 | 1_1:+34953232 | Msa0020000:exon |
| GCAGACTCCTGCATGGTCAT+GGG | 0.561161 | 1_1:-34954015 | None:intergenic |
| TTGGGGTTCGAAAGTGTCCA+TGG | 0.562085 | 1_1:-34953249 | None:intergenic |
| GCAAACAAAGCCGCAAAGCA+TGG | 0.573484 | 1_1:-34953969 | None:intergenic |
| TGAGTTGGCACATGATGCCC+AGG | 0.575121 | 1_1:-34955339 | None:intergenic |
| TCAATCTCTGAGAGAGGCGA+GGG | 0.577892 | 1_1:-34953362 | None:intergenic |
| GATCATCCGATTGAGGGATC+GGG | 0.580413 | 1_1:-34953472 | None:intergenic |
| AAGTTGATGAATGATTTGAA+TGG | 0.581512 | 1_1:-34953205 | None:intergenic |
| TGTTGTTAGCCACAGTGGAA+GGG | 0.582265 | 1_1:-34955368 | None:intergenic |
| GATTTGAATGGAATTAGTGA+AGG | 0.584372 | 1_1:-34953193 | None:intergenic |
| CTCAATCTCTGAGAGAGGCG+AGG | 0.584965 | 1_1:-34953363 | None:intergenic |
| GGTTCAGGAGGAACCTCTTG+AGG | 0.589392 | 1_1:-34953539 | None:intergenic |
| GTTACCTCCAAGAGAAAACA+TGG | 0.596124 | 1_1:+34955393 | Msa0020000:CDS |
| CTGCTGTGAAGTCAAGAGAG+AGG | 0.599823 | 1_1:+34953848 | Msa0020000:CDS |
| TGATCCAGTAACTCCTCAAG+AGG | 0.602779 | 1_1:+34953526 | Msa0020000:CDS |
| CTTCTCATGTCTGATGCTGA+GGG | 0.604464 | 1_1:+34953389 | Msa0020000:CDS |
| GTGGAAGGGGTAGACTGAGT+TGG | 0.606292 | 1_1:-34955354 | None:intergenic |
| CGGCTTTGTTTGCAATCGCG+TGG | 0.608761 | 1_1:+34953979 | Msa0020000:CDS |
| GTGTCTGCGACGGAAACAGA+AGG | 0.621465 | 1_1:-34953338 | None:intergenic |
| GAACAAATAGAACATCTGAA+AGG | 0.627981 | 1_1:-34955575 | None:intergenic |
| AACACTGTTGTTAGCCACAG+TGG | 0.628137 | 1_1:-34955373 | None:intergenic |
| AAAATCTTGAGACGAAGAGT+AGG | 0.630085 | 1_1:+34953887 | Msa0020000:CDS |
| AGGCGAGGGAGTGTCTGCGA+CGG | 0.634385 | 1_1:-34953348 | None:intergenic |
| AAAAGTGAGAGAGATAGAGA+GGG | 0.638866 | 1_1:-34955630 | None:intergenic |
| AGATTCTCAATCTCTGAGAG+AGG | 0.640144 | 1_1:-34953368 | None:intergenic |
| AGAGATTCGAAATCGATTTG+GGG | 0.646761 | 1_1:-34953266 | None:intergenic |
| TTTCAGGCAGATGAGGAACA+GGG | 0.660559 | 1_1:+34953822 | Msa0020000:intron |
| GGAACACAAAGGTCTAAGAA+GGG | 0.664648 | 1_1:+34955414 | Msa0020000:CDS |
| GTGAGAGCGGTTATAAACAG+TGG | 0.666996 | 1_1:-34953142 | None:intergenic |
| TAGCAGGGAACCCAACAGCA+GGG | 0.674308 | 1_1:-34955311 | None:intergenic |
| ACACAAAGGTCTAAGAAGGG+TGG | 0.678689 | 1_1:+34955417 | Msa0020000:CDS |
| ATGGTGATTGACCAGTGAGA+AGG | 0.682751 | 1_1:-34954766 | None:intergenic |
| GAGCACAGCAGACTCCTGCA+TGG | 0.688063 | 1_1:-34954022 | None:intergenic |
| GATGCCCAGGAACCATAGCA+GGG | 0.695327 | 1_1:-34955326 | None:intergenic |
| AGAGAAAACATGGAACACAA+AGG | 0.721160 | 1_1:+34955403 | Msa0020000:CDS |
| TCAGTCTACCCCTTCCACTG+TGG | 0.742334 | 1_1:+34955359 | Msa0020000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTGATATTGAATAATT+TGG | + | chr1_1:34954317-34954336 | Msa0020000:intron | 15.0% |
| !!! | AATTCTTTAGGTTTTTTATT+GGG | + | chr1_1:34954412-34954431 | Msa0020000:intron | 15.0% |
| !!! | TAATTTGTAATTTGTATTCG+AGG | + | chr1_1:34953733-34953752 | Msa0020000:intron | 20.0% |
| !!! | GAAAGTAAGTAAATTTGTTT+AGG | - | chr1_1:34954201-34954220 | None:intergenic | 20.0% |
| !! | TTATTCAATATCAACTAACA+TGG | - | chr1_1:34954315-34954334 | None:intergenic | 20.0% |
| !!! | GAATTCTTTAGGTTTTTTAT+TGG | + | chr1_1:34954411-34954430 | Msa0020000:intron | 20.0% |
| !!! | AAACCTTAGATCTTTTTAAT+TGG | + | chr1_1:34954657-34954676 | Msa0020000:intron | 20.0% |
| !! | TAAATGGAAAAAAAATTGTG+TGG | + | chr1_1:34954903-34954922 | Msa0020000:intron | 20.0% |
| !! | AAATGGAAAAAAAATTGTGT+GGG | + | chr1_1:34954904-34954923 | Msa0020000:intron | 20.0% |
| !! | TACATAAAACATAAACAACA+TGG | + | chr1_1:34955097-34955116 | Msa0020000:intron | 20.0% |
| !! | ATTCATTTAACATGCATAAA+GGG | - | chr1_1:34955155-34955174 | None:intergenic | 20.0% |
| !! | TATTCATTTAACATGCATAA+AGG | - | chr1_1:34955156-34955175 | None:intergenic | 20.0% |
| !!! | ATGTTATAAAACTTTTGAAG+TGG | + | chr1_1:34955550-34955569 | Msa0020000:three_prime_UTR | 20.0% |
| !!! | TGTTATAAAACTTTTGAAGT+GGG | + | chr1_1:34955551-34955570 | Msa0020000:three_prime_UTR | 20.0% |
| !!! | TTGCATATTTTTTTGTAACT+AGG | - | chr1_1:34955689-34955708 | None:intergenic | 20.0% |
| !!! | AAGTTGATGAATGATTTGAA+TGG | - | chr1_1:34953208-34953227 | None:intergenic | 25.0% |
| !!! | CTAATTTGCTTTTTTGAAAC+GGG | - | chr1_1:34953563-34953582 | None:intergenic | 25.0% |
| !!! | CCTAATTTGCTTTTTTGAAA+CGG | - | chr1_1:34953564-34953583 | None:intergenic | 25.0% |
| ! | TTACAGAATATGATCAACAT+CGG | - | chr1_1:34953645-34953664 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTTCAACCTGC+TGG | + | chr1_1:34953708-34953727 | Msa0020000:intron | 25.0% |
| !! | AAAGGAAATATGATTTGCAA+TGG | - | chr1_1:34954065-34954084 | None:intergenic | 25.0% |
| ! | TACTTACTTTCTTGAATGAA+TGG | + | chr1_1:34954210-34954229 | Msa0020000:intron | 25.0% |
| ! | TGGATAATATGTTTCTTTGT+CGG | + | chr1_1:34954337-34954356 | Msa0020000:intron | 25.0% |
| ! | CAGATGTTAAAGAATTCTTT+AGG | + | chr1_1:34954400-34954419 | Msa0020000:intron | 25.0% |
| ! | TTTAACAGTGTTATGAATAG+TGG | + | chr1_1:34954474-34954493 | Msa0020000:intron | 25.0% |
| !!! | TCTAAGGTTTTATGTTTCAT+GGG | - | chr1_1:34954647-34954666 | None:intergenic | 25.0% |
| !!! | ATCTAAGGTTTTATGTTTCA+TGG | - | chr1_1:34954648-34954667 | None:intergenic | 25.0% |
| ! | ACTCCAATTAAAAAGATCTA+AGG | - | chr1_1:34954663-34954682 | None:intergenic | 25.0% |
| !!! | CTTTTTAATTGGAGTATCTT+AGG | + | chr1_1:34954668-34954687 | Msa0020000:intron | 25.0% |
| ! | TACATAAAGCTCACTAATTA+TGG | - | chr1_1:34954788-34954807 | None:intergenic | 25.0% |
| !!! | TCAGAGATATTTTTACTGTT+TGG | - | chr1_1:34955454-34955473 | None:intergenic | 25.0% |
| !!! | GTTATAAAACTTTTGAAGTG+GGG | + | chr1_1:34955552-34955571 | Msa0020000:three_prime_UTR | 25.0% |
| ! | AAAGAAAATGCAAAGAAAGA+AGG | - | chr1_1:34955600-34955619 | None:intergenic | 25.0% |
| !! | TTCTTCCTATTTGAAACATA+TGG | + | chr1_1:34955777-34955796 | Msa0020000:three_prime_UTR | 25.0% |
| ! | AACTTCCATATGTTTCAAAT+AGG | - | chr1_1:34955785-34955804 | None:intergenic | 25.0% |
| AGAAGAAAAAAAAGTGAGAG+CGG | - | chr1_1:34953158-34953177 | None:intergenic | 30.0% | |
| GATTTGAATGGAATTAGTGA+AGG | - | chr1_1:34953196-34953215 | None:intergenic | 30.0% | |
| AACTTCTTCTTCGTAATTTC+TGG | + | chr1_1:34953223-34953242 | Msa0020000:five_prime_UTR | 30.0% | |
| GAATATCTTCGAGAAACTTA+TGG | - | chr1_1:34953445-34953464 | None:intergenic | 30.0% | |
| CCGTTTCAAAAAAGCAAATT+AGG | + | chr1_1:34953561-34953580 | Msa0020000:CDS | 30.0% | |
| AAATTACAAATTACTCCAGC+AGG | - | chr1_1:34953726-34953745 | None:intergenic | 30.0% | |
| !!! | TGTTTTGGTATCTGATTTTC+AGG | + | chr1_1:34953806-34953825 | Msa0020000:intron | 30.0% |
| AATCAAATGGCAATGACAAT+AGG | - | chr1_1:34954097-34954116 | None:intergenic | 30.0% | |
| !! | TTGTCATTGCCATTTGATTT+TGG | + | chr1_1:34954098-34954117 | Msa0020000:intron | 30.0% |
| !! | TGTCATTGCCATTTGATTTT+GGG | + | chr1_1:34954099-34954118 | Msa0020000:intron | 30.0% |
| CTTCAATACCCAAAATCAAA+TGG | - | chr1_1:34954110-34954129 | None:intergenic | 30.0% | |
| ATGCTCTATAGTTTATCTGT+TGG | + | chr1_1:34954244-34954263 | Msa0020000:intron | 30.0% | |
| ATAATATTTCACCTTCTCAC+TGG | + | chr1_1:34954755-34954774 | Msa0020000:CDS | 30.0% | |
| !! | TTTAGGTTTTTGCGTCTAAA+TGG | + | chr1_1:34954887-34954906 | Msa0020000:intron | 30.0% |
| !!! | TACTTTTTCTCTGAGAGTTT+TGG | - | chr1_1:34955128-34955147 | None:intergenic | 30.0% |
| ! | GTTTTATGAAGTTGCTCTAA+TGG | + | chr1_1:34955227-34955246 | Msa0020000:intron | 30.0% |
| GAACAAATAGAACATCTGAA+AGG | - | chr1_1:34955578-34955597 | None:intergenic | 30.0% | |
| AATATGCAAACCAAACATGT+TGG | + | chr1_1:34955700-34955719 | Msa0020000:three_prime_UTR | 30.0% | |
| ATATGCAAACCAAACATGTT+GGG | + | chr1_1:34955701-34955720 | Msa0020000:three_prime_UTR | 30.0% | |
| !! | TTCGTAATTTCTGGTTACCA+TGG | + | chr1_1:34953232-34953251 | Msa0020000:exon | 35.0% |
| !! | AGAGATTCGAAATCGATTTG+GGG | - | chr1_1:34953269-34953288 | None:intergenic | 35.0% |
| ! | GAGAGATTCGAAATCGATTT+GGG | - | chr1_1:34953270-34953289 | None:intergenic | 35.0% |
| AGAGAGATTCGAAATCGATT+TGG | - | chr1_1:34953271-34953290 | None:intergenic | 35.0% | |
| ATCTTCCTCCTGCAAAAAAT+CGG | - | chr1_1:34953312-34953331 | None:intergenic | 35.0% | |
| TTCGAGAAACTTATGGTAGT+CGG | - | chr1_1:34953438-34953457 | None:intergenic | 35.0% | |
| !!! | GGTTCTAATGAGAAGTGTTT+TGG | + | chr1_1:34953791-34953810 | Msa0020000:intron | 35.0% |
| AAAATCTTGAGACGAAGAGT+AGG | + | chr1_1:34953887-34953906 | Msa0020000:CDS | 35.0% | |
| !! | ACGAAGAGTAGGTATTTTGA+AGG | + | chr1_1:34953898-34953917 | Msa0020000:CDS | 35.0% |
| !! | CGAAGAGTAGGTATTTTGAA+GGG | + | chr1_1:34953899-34953918 | Msa0020000:CDS | 35.0% |
| !! | GAAGAGTAGGTATTTTGAAG+GGG | + | chr1_1:34953900-34953919 | Msa0020000:CDS | 35.0% |
| GACAATAGGAAAAGAAGCAA+AGG | - | chr1_1:34954083-34954102 | None:intergenic | 35.0% | |
| ! | CCTTCATATCGTTTTGCTTT+TGG | - | chr1_1:34954141-34954160 | None:intergenic | 35.0% |
| CCAAAAGCAAAACGATATGA+AGG | + | chr1_1:34954138-34954157 | Msa0020000:intron | 35.0% | |
| ATGACTTTGCACGAATGATT+TGG | + | chr1_1:34954167-34954186 | Msa0020000:intron | 35.0% | |
| ATGGCAGTCATGAAAGAATA+AGG | - | chr1_1:34954296-34954315 | None:intergenic | 35.0% | |
| ACAACAGTAAGAAGACAACA+TGG | - | chr1_1:34954374-34954393 | None:intergenic | 35.0% | |
| ! | TTTTGCAGAACACAAAGTAC+TGG | + | chr1_1:34954435-34954454 | Msa0020000:intron | 35.0% |
| ! | TTTGCAGAACACAAAGTACT+GGG | + | chr1_1:34954436-34954455 | Msa0020000:intron | 35.0% |
| TGTTATGAATAGTGGTGTAG+TGG | + | chr1_1:34954482-34954501 | Msa0020000:intron | 35.0% | |
| AAAAACACCATGACAGTGTT+TGG | + | chr1_1:34954706-34954725 | Msa0020000:intron | 35.0% | |
| AAAACACCATGACAGTGTTT+GGG | + | chr1_1:34954707-34954726 | Msa0020000:intron | 35.0% | |
| ! | AGTGAGCTTTATGTATGTAC+TGG | + | chr1_1:34954793-34954812 | Msa0020000:CDS | 35.0% |
| TGACCTCAAAAACACTATAG+CGG | - | chr1_1:34954824-34954843 | None:intergenic | 35.0% | |
| ! | AGCAATTGTGCTATGTTTTC+TGG | + | chr1_1:34954843-34954862 | Msa0020000:intron | 35.0% |
| ! | GCAATTGTGCTATGTTTTCT+GGG | + | chr1_1:34954844-34954863 | Msa0020000:intron | 35.0% |
| TAACAATCACAACCACTTGT+TGG | + | chr1_1:34954942-34954961 | Msa0020000:intron | 35.0% | |
| !!! | AGCCTTTTTTTTTGGTCCAA+AGG | + | chr1_1:34954995-34955014 | Msa0020000:intron | 35.0% |
| CACCTTTGGACCAAAAAAAA+AGG | - | chr1_1:34955000-34955019 | None:intergenic | 35.0% | |
| CAAATCTGGATTACAGCAAA+AGG | - | chr1_1:34955028-34955047 | None:intergenic | 35.0% | |
| CAAATCTGGATTACAGCAAA+AGG | - | chr1_1:34955028-34955047 | None:intergenic | 35.0% | |
| TTTGCATAAGCACACAAATC+TGG | - | chr1_1:34955076-34955095 | None:intergenic | 35.0% | |
| ! | TTGTGTTCCATGTTTTCTCT+TGG | - | chr1_1:34955403-34955422 | None:intergenic | 35.0% |
| AGAGAAAACATGGAACACAA+AGG | + | chr1_1:34955403-34955422 | Msa0020000:CDS | 35.0% | |
| TCTTTACAAACGATTGAGTC+AGG | - | chr1_1:34955483-34955502 | None:intergenic | 35.0% | |
| AAAAGTGAGAGAGATAGAGA+GGG | - | chr1_1:34955633-34955652 | None:intergenic | 35.0% | |
| AAAAAGTGAGAGAGATAGAG+AGG | - | chr1_1:34955634-34955653 | None:intergenic | 35.0% | |
| !! | TCTCTATCTCTCTCACTTTT+TGG | + | chr1_1:34955633-34955652 | Msa0020000:three_prime_UTR | 35.0% |
| ! | AGATTCTCAATCTCTGAGAG+AGG | - | chr1_1:34953371-34953390 | None:intergenic | 40.0% |
| AACCTTGATCATCCGATTGA+GGG | - | chr1_1:34953481-34953500 | None:intergenic | 40.0% | |
| AAACCTTGATCATCCGATTG+AGG | - | chr1_1:34953482-34953501 | None:intergenic | 40.0% | |
| !!! | TTTTTTGAAACGGGTTCAGG+AGG | - | chr1_1:34953554-34953573 | None:intergenic | 40.0% |
| !!! | TGCTTTTTTGAAACGGGTTC+AGG | - | chr1_1:34953557-34953576 | None:intergenic | 40.0% |
| TTCGAGGTTACCGAATTTGA+TGG | + | chr1_1:34953749-34953768 | Msa0020000:intron | 40.0% | |
| TCGAGGTTACCGAATTTGAT+GGG | + | chr1_1:34953750-34953769 | Msa0020000:intron | 40.0% | |
| CCATAAGACCCCATCAAATT+CGG | - | chr1_1:34953762-34953781 | None:intergenic | 40.0% | |
| ! | CGAATTTGATGGGGTCTTAT+GGG | + | chr1_1:34953760-34953779 | Msa0020000:intron | 40.0% |
| !! | ATCTGATTTTCAGGCAGATG+AGG | + | chr1_1:34953815-34953834 | Msa0020000:intron | 40.0% |
| !! | GCACGAATGATTTGGTTGTT+TGG | + | chr1_1:34954175-34954194 | Msa0020000:intron | 40.0% |
| ATTTCAGATCTCATCTCGTG+TGG | - | chr1_1:34954592-34954611 | None:intergenic | 40.0% | |
| !! | ATCCCGCTATAGTGTTTTTG+AGG | + | chr1_1:34954818-34954837 | Msa0020000:CDS | 40.0% |
| GACCTCAAAAACACTATAGC+GGG | - | chr1_1:34954823-34954842 | None:intergenic | 40.0% | |
| ! | GATACATACCACTGCTGTTT+AGG | + | chr1_1:34954870-34954889 | Msa0020000:intron | 40.0% |
| CCAAAAAAAAAGGCTACAGG+AGG | - | chr1_1:34954990-34955009 | None:intergenic | 40.0% | |
| !!! | CCTCCTGTAGCCTTTTTTTT+TGG | + | chr1_1:34954987-34955006 | Msa0020000:intron | 40.0% |
| GGACCAAAAAAAAAGGCTAC+AGG | - | chr1_1:34954993-34955012 | None:intergenic | 40.0% | |
| ATCTGGATTACAGCAAAAGG+AGG | - | chr1_1:34955025-34955044 | None:intergenic | 40.0% | |
| ATCTGGATTACAGCAAAAGG+AGG | - | chr1_1:34955025-34955044 | None:intergenic | 40.0% | |
| TCTTCGAATGATGGCAACAT+TGG | - | chr1_1:34955203-34955222 | None:intergenic | 40.0% | |
| AAAACCCACTCTTCGAATGA+TGG | - | chr1_1:34955212-34955231 | None:intergenic | 40.0% | |
| GTTACCTCCAAGAGAAAACA+TGG | + | chr1_1:34955393-34955412 | Msa0020000:CDS | 40.0% | |
| ! | TGTTCCATGTTTTCTCTTGG+AGG | - | chr1_1:34955400-34955419 | None:intergenic | 40.0% |
| TGGAACACAAAGGTCTAAGA+AGG | + | chr1_1:34955413-34955432 | Msa0020000:CDS | 40.0% | |
| GGAACACAAAGGTCTAAGAA+GGG | + | chr1_1:34955414-34955433 | Msa0020000:CDS | 40.0% | |
| !! | TAAGAAGGGTGGCTCTAAAA+GGG | + | chr1_1:34955428-34955447 | Msa0020000:CDS | 40.0% |
| TCATCTTCGTTCTTGAAGCT+TGG | - | chr1_1:34955516-34955535 | None:intergenic | 40.0% | |
| !! | CAAAAGCATCCCAACATGTT+TGG | - | chr1_1:34955713-34955732 | None:intergenic | 40.0% |
| ! | CAAACATGTTGGGATGCTTT+TGG | + | chr1_1:34955711-34955730 | Msa0020000:three_prime_UTR | 40.0% |
| GTGAGAGCGGTTATAAACAG+TGG | - | chr1_1:34953145-34953164 | None:intergenic | 45.0% | |
| TCTTCTCATGTCTGATGCTG+AGG | + | chr1_1:34953388-34953407 | Msa0020000:CDS | 45.0% | |
| CTTCTCATGTCTGATGCTGA+GGG | + | chr1_1:34953389-34953408 | Msa0020000:CDS | 45.0% | |
| TGATCATCCGATTGAGGGAT+CGG | - | chr1_1:34953476-34953495 | None:intergenic | 45.0% | |
| ATCCCTCAATCGGATGATCA+AGG | + | chr1_1:34953476-34953495 | Msa0020000:CDS | 45.0% | |
| ! | TCAACTCTGGCTTCATCAGA+AGG | - | chr1_1:34953509-34953528 | None:intergenic | 45.0% |
| AGGAGTTACTGGATCAACTC+TGG | - | chr1_1:34953522-34953541 | None:intergenic | 45.0% | |
| TGATCCAGTAACTCCTCAAG+AGG | + | chr1_1:34953526-34953545 | Msa0020000:CDS | 45.0% | |
| CGAGGTTACCGAATTTGATG+GGG | + | chr1_1:34953751-34953770 | Msa0020000:intron | 45.0% | |
| CCGAATTTGATGGGGTCTTA+TGG | + | chr1_1:34953759-34953778 | Msa0020000:intron | 45.0% | |
| ! | GGGGTCTTATGGGATGATTA+TGG | + | chr1_1:34953770-34953789 | Msa0020000:intron | 45.0% |
| !! | TTTTCAGGCAGATGAGGAAC+AGG | + | chr1_1:34953821-34953840 | Msa0020000:intron | 45.0% |
| TTTCAGGCAGATGAGGAACA+GGG | + | chr1_1:34953822-34953841 | Msa0020000:intron | 45.0% | |
| ATGCTGAGAACCATGCTTTG+CGG | + | chr1_1:34953959-34953978 | Msa0020000:CDS | 45.0% | |
| ! | TGAATAGTGGTGTAGTGGAG+TGG | + | chr1_1:34954487-34954506 | Msa0020000:intron | 45.0% |
| TGCTTGTTTGTAGCAGCCAA+GGG | - | chr1_1:34954513-34954532 | None:intergenic | 45.0% | |
| GGCCAATATAGCTCATGTTG+CGG | + | chr1_1:34954555-34954574 | Msa0020000:intron | 45.0% | |
| CTTCTCATGCTGTCTCATTC+AGG | + | chr1_1:34954730-34954749 | Msa0020000:intron | 45.0% | |
| ATGGTGATTGACCAGTGAGA+AGG | - | chr1_1:34954769-34954788 | None:intergenic | 45.0% | |
| CGCAAAAACCTAAACAGCAG+TGG | - | chr1_1:34954881-34954900 | None:intergenic | 45.0% | |
| CTCTGACAAAGACCAACAAG+TGG | - | chr1_1:34954957-34954976 | None:intergenic | 45.0% | |
| ! | AGCAAAAGGAGGTACACCTT+TGG | - | chr1_1:34955014-34955033 | None:intergenic | 45.0% |
| TGTTGCCATCATTCGAAGAG+TGG | + | chr1_1:34955204-34955223 | Msa0020000:intron | 45.0% | |
| GTTGCCATCATTCGAAGAGT+GGG | + | chr1_1:34955205-34955224 | Msa0020000:intron | 45.0% | |
| AACAGCAGGGATTCTGCAAA+AGG | - | chr1_1:34955301-34955320 | None:intergenic | 45.0% | |
| ! | TTTTGCAGAATCCCTGCTGT+TGG | + | chr1_1:34955300-34955319 | Msa0020000:intron | 45.0% |
| TTTGCAGAATCCCTGCTGTT+GGG | + | chr1_1:34955301-34955320 | Msa0020000:intron | 45.0% | |
| TGTTGTTAGCCACAGTGGAA+GGG | - | chr1_1:34955371-34955390 | None:intergenic | 45.0% | |
| AACACTGTTGTTAGCCACAG+TGG | - | chr1_1:34955376-34955395 | None:intergenic | 45.0% | |
| ACACAAAGGTCTAAGAAGGG+TGG | + | chr1_1:34955417-34955436 | Msa0020000:CDS | 45.0% | |
| !! | CTAAGAAGGGTGGCTCTAAA+AGG | + | chr1_1:34955427-34955446 | Msa0020000:CDS | 45.0% |
| !! | TTGGGGTTCGAAAGTGTCCA+TGG | - | chr1_1:34953252-34953271 | None:intergenic | 50.0% |
| !!! | CGAAGTCGCCGATTTTTTGC+AGG | + | chr1_1:34953301-34953320 | Msa0020000:CDS | 50.0% |
| !!! | AGTCGCCGATTTTTTGCAGG+AGG | + | chr1_1:34953304-34953323 | Msa0020000:CDS | 50.0% |
| ! | TCAATCTCTGAGAGAGGCGA+GGG | - | chr1_1:34953365-34953384 | None:intergenic | 50.0% |
| GGGAATTGCGTCGTCATCAT+CGG | + | chr1_1:34953409-34953428 | Msa0020000:CDS | 50.0% | |
| GATCATCCGATTGAGGGATC+GGG | - | chr1_1:34953475-34953494 | None:intergenic | 50.0% | |
| GGAACCTCTTGAGGAGTTAC+TGG | - | chr1_1:34953533-34953552 | None:intergenic | 50.0% | |
| CTGCTGTGAAGTCAAGAGAG+AGG | + | chr1_1:34953848-34953867 | Msa0020000:CDS | 50.0% | |
| TGAAGGGGAATGCAGAAGAC+TGG | + | chr1_1:34953915-34953934 | Msa0020000:CDS | 50.0% | |
| GCAAACAAAGCCGCAAAGCA+TGG | - | chr1_1:34953972-34953991 | None:intergenic | 50.0% | |
| ! | CTTTGTTTGCAATCGCGTGG+TGG | + | chr1_1:34953982-34954001 | Msa0020000:CDS | 50.0% |
| GAGTCTGCTGTGCTCTTGTT+GGG | + | chr1_1:34954030-34954049 | Msa0020000:CDS | 50.0% | |
| TGCTGTGCTCTTGTTGGGTA+AGG | + | chr1_1:34954035-34954054 | Msa0020000:intron | 50.0% | |
| CTGCTTGTTTGTAGCAGCCA+AGG | - | chr1_1:34954514-34954533 | None:intergenic | 50.0% | |
| GGCCGCAACATGAGCTATAT+TGG | - | chr1_1:34954560-34954579 | None:intergenic | 50.0% | |
| CATCTCGTGTGGCACTTTAG+AGG | - | chr1_1:34954581-34954600 | None:intergenic | 50.0% | |
| GAGAAGCCCAAACACTGTCA+TGG | - | chr1_1:34954716-34954735 | None:intergenic | 50.0% | |
| ! | AGGAGGTACGCACACAAATC+TGG | - | chr1_1:34955042-34955061 | None:intergenic | 50.0% |
| GTTGTTAGCCACAGTGGAAG+GGG | - | chr1_1:34955370-34955389 | None:intergenic | 50.0% | |
| CTGTTGTTAGCCACAGTGGA+AGG | - | chr1_1:34955372-34955391 | None:intergenic | 50.0% | |
| GTGTCTGCGACGGAAACAGA+AGG | - | chr1_1:34953341-34953360 | None:intergenic | 55.0% | |
| ! | CTCAATCTCTGAGAGAGGCG+AGG | - | chr1_1:34953366-34953385 | None:intergenic | 55.0% |
| GGTTCAGGAGGAACCTCTTG+AGG | - | chr1_1:34953542-34953561 | None:intergenic | 55.0% | |
| !! | CGGCTTTGTTTGCAATCGCG+TGG | + | chr1_1:34953979-34953998 | Msa0020000:CDS | 55.0% |
| TTGCAATCGCGTGGTGGCTT+TGG | + | chr1_1:34953988-34954007 | Msa0020000:CDS | 55.0% | |
| GCAGACTCCTGCATGGTCAT+GGG | - | chr1_1:34954018-34954037 | None:intergenic | 55.0% | |
| AGCAGACTCCTGCATGGTCA+TGG | - | chr1_1:34954019-34954038 | None:intergenic | 55.0% | |
| GGAGTCTGCTGTGCTCTTGT+TGG | + | chr1_1:34954029-34954048 | Msa0020000:CDS | 55.0% | |
| TAGTGCAGCTGCTGCTAGAG+CGG | + | chr1_1:34954534-34954553 | Msa0020000:intron | 55.0% | |
| TAGCAGGGAACCCAACAGCA+GGG | - | chr1_1:34955314-34955333 | None:intergenic | 55.0% | |
| ATAGCAGGGAACCCAACAGC+AGG | - | chr1_1:34955315-34955334 | None:intergenic | 55.0% | |
| TGCTGTTGGGTTCCCTGCTA+TGG | + | chr1_1:34955314-34955333 | Msa0020000:CDS | 55.0% | |
| GGTTCCCTGCTATGGTTCCT+GGG | + | chr1_1:34955322-34955341 | Msa0020000:CDS | 55.0% | |
| GATGCCCAGGAACCATAGCA+GGG | - | chr1_1:34955329-34955348 | None:intergenic | 55.0% | |
| TGATGCCCAGGAACCATAGC+AGG | - | chr1_1:34955330-34955349 | None:intergenic | 55.0% | |
| ! | TGAGTTGGCACATGATGCCC+AGG | - | chr1_1:34955342-34955361 | None:intergenic | 55.0% |
| GTGGAAGGGGTAGACTGAGT+TGG | - | chr1_1:34955357-34955376 | None:intergenic | 55.0% | |
| TCAGTCTACCCCTTCCACTG+TGG | + | chr1_1:34955359-34955378 | Msa0020000:CDS | 55.0% | |
| CCTCGACCCGATCCCTCAAT+CGG | + | chr1_1:34953466-34953485 | Msa0020000:CDS | 60.0% | |
| TGGTGCTCCCATGACCATGC+AGG | + | chr1_1:34954008-34954027 | Msa0020000:CDS | 60.0% | |
| GAGCACAGCAGACTCCTGCA+TGG | - | chr1_1:34954025-34954044 | None:intergenic | 60.0% | |
| ! | TGGTGTAGTGGAGTGGCCCT+TGG | + | chr1_1:34954494-34954513 | Msa0020000:intron | 60.0% |
| GGGTTCCCTGCTATGGTTCC+TGG | + | chr1_1:34955321-34955340 | Msa0020000:CDS | 60.0% | |
| !! | AGGCGAGGGAGTGTCTGCGA+CGG | - | chr1_1:34953351-34953370 | None:intergenic | 65.0% |
| CCGATTGAGGGATCGGGTCG+AGG | - | chr1_1:34953469-34953488 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 34953124 | 34955846 | 34953124 | ID=Msa0020000;Name=Msa0020000 |
| chr1_1 | mRNA | 34953124 | 34955846 | 34953124 | ID=Msa0020000-mRNA-1;Parent=Msa0020000;Name=Msa0020000-mRNA-1;_AED=0.07;_eAED=0.07;_QI=127|0.33|0.75|0.75|1|1|4|385|265 |
| chr1_1 | exon | 34953124 | 34953582 | 34953124 | ID=Msa0020000-mRNA-1:exon:11048;Parent=Msa0020000-mRNA-1 |
| chr1_1 | exon | 34953828 | 34954051 | 34953828 | ID=Msa0020000-mRNA-1:exon:11049;Parent=Msa0020000-mRNA-1 |
| chr1_1 | exon | 34954752 | 34954839 | 34954752 | ID=Msa0020000-mRNA-1:exon:11050;Parent=Msa0020000-mRNA-1 |
| chr1_1 | exon | 34955308 | 34955846 | 34955308 | ID=Msa0020000-mRNA-1:exon:11051;Parent=Msa0020000-mRNA-1 |
| chr1_1 | five_prime_UTR | 34953124 | 34953250 | 34953124 | ID=Msa0020000-mRNA-1:five_prime_utr;Parent=Msa0020000-mRNA-1 |
| chr1_1 | CDS | 34953251 | 34953582 | 34953251 | ID=Msa0020000-mRNA-1:cds;Parent=Msa0020000-mRNA-1 |
| chr1_1 | CDS | 34953828 | 34954051 | 34953828 | ID=Msa0020000-mRNA-1:cds;Parent=Msa0020000-mRNA-1 |
| chr1_1 | CDS | 34954752 | 34954839 | 34954752 | ID=Msa0020000-mRNA-1:cds;Parent=Msa0020000-mRNA-1 |
| chr1_1 | CDS | 34955308 | 34955461 | 34955308 | ID=Msa0020000-mRNA-1:cds;Parent=Msa0020000-mRNA-1 |
| chr1_1 | three_prime_UTR | 34955462 | 34955846 | 34955462 | ID=Msa0020000-mRNA-1:three_prime_utr;Parent=Msa0020000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
