Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020560 | KAG5049782.1 | 44.567 | 543 | 209 | 6 | 1 | 467 | 3 | 529 | 4.86e-148 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020560 | sp|Q9SZL8|FRS5_ARATH | 31.282 | 195 | 119 | 5 | 20 | 210 | 60 | 243 | 1.29e-13 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0020560 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020560 | MtrunA17_Chr1g0202341 | 30.332 | 211 | 129 | 6 | 27 | 232 | 43 | 240 | 3.52e-18 | 87.4 |
| Msa0020560 | MtrunA17_Chr6g0458391 | 35.433 | 127 | 70 | 2 | 35 | 159 | 225 | 341 | 6.24e-15 | 77.4 |
| Msa0020560 | MtrunA17_Chr2g0329361 | 37.097 | 124 | 67 | 4 | 27 | 147 | 52 | 167 | 1.14e-14 | 73.9 |
| Msa0020560 | MtrunA17_Chr2g0287651 | 28.889 | 180 | 117 | 5 | 41 | 217 | 81 | 252 | 3.45e-13 | 72.0 |
| Msa0020560 | MtrunA17_Chr2g0324011 | 30.058 | 173 | 108 | 4 | 30 | 200 | 5 | 166 | 3.57e-13 | 71.6 |
| Msa0020560 | MtrunA17_Chr7g0258861 | 25.568 | 176 | 121 | 2 | 26 | 200 | 1 | 167 | 3.86e-13 | 70.1 |
| Msa0020560 | MtrunA17_Chr5g0448761 | 29.082 | 196 | 127 | 4 | 31 | 222 | 56 | 243 | 4.06e-12 | 68.6 |
| Msa0020560 | MtrunA17_Chr2g0329421 | 32.500 | 120 | 68 | 3 | 34 | 151 | 26 | 134 | 1.10e-11 | 64.3 |
| Msa0020560 | MtrunA17_Chr4g0033611 | 33.065 | 124 | 63 | 5 | 26 | 144 | 68 | 176 | 1.80e-11 | 64.3 |
| Msa0020560 | MtrunA17_Chr1g0203721 | 32.773 | 119 | 68 | 3 | 37 | 153 | 65 | 173 | 7.53e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0020560 | AT4G38180.1 | 31.282 | 195 | 119 | 5 | 20 | 210 | 60 | 243 | 1.31e-14 | 77.0 |
| Msa0020560 | AT3G59470.3 | 31.013 | 158 | 82 | 6 | 2 | 148 | 33 | 174 | 2.38e-11 | 64.3 |
| Msa0020560 | AT3G59470.1 | 31.013 | 158 | 82 | 6 | 2 | 148 | 33 | 174 | 2.38e-11 | 64.3 |
| Msa0020560 | AT3G59470.2 | 31.013 | 158 | 82 | 6 | 2 | 148 | 45 | 186 | 2.84e-11 | 64.3 |
| Msa0020560 | AT5G28530.4 | 23.737 | 198 | 131 | 6 | 30 | 219 | 50 | 235 | 3.17e-11 | 66.2 |
| Msa0020560 | AT5G28530.5 | 23.737 | 198 | 131 | 6 | 30 | 219 | 50 | 235 | 3.30e-11 | 65.9 |
| Msa0020560 | AT5G28530.3 | 23.737 | 198 | 131 | 6 | 30 | 219 | 50 | 235 | 3.66e-11 | 65.9 |
| Msa0020560 | AT5G28530.2 | 23.737 | 198 | 131 | 6 | 30 | 219 | 50 | 235 | 3.66e-11 | 65.9 |
| Msa0020560 | AT5G28530.1 | 23.737 | 198 | 131 | 6 | 30 | 219 | 50 | 235 | 4.01e-11 | 65.9 |
| Msa0020560 | AT4G15090.1 | 35.115 | 131 | 77 | 3 | 222 | 346 | 437 | 565 | 6.44e-11 | 65.5 |
| Msa0020560 | AT4G15090.5 | 35.115 | 131 | 77 | 3 | 222 | 346 | 437 | 565 | 6.44e-11 | 65.5 |
| Msa0020560 | AT4G15090.3 | 35.115 | 131 | 77 | 3 | 222 | 346 | 437 | 565 | 6.44e-11 | 65.5 |
| Msa0020560 | AT4G15090.2 | 35.115 | 131 | 77 | 3 | 222 | 346 | 437 | 565 | 6.44e-11 | 65.5 |
| Msa0020560 | AT4G15090.4 | 35.115 | 131 | 77 | 3 | 222 | 346 | 437 | 565 | 6.44e-11 | 65.5 |
Find 75 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAACAATTGTTTCTTTCT+AGG | 0.120731 | 1_1:+35626212 | None:intergenic |
| AGCTTAATTTGGTTGAATTT+TGG | 0.141638 | 1_1:-35625287 | Msa0020560:CDS |
| AGTATGACCTTCATAAAATT+TGG | 0.178226 | 1_1:+35626250 | None:intergenic |
| CTTGAATACGAAGCTTAATT+TGG | 0.179939 | 1_1:-35625298 | Msa0020560:CDS |
| ATTGAAGGCATGTTCTAAAT+TGG | 0.197063 | 1_1:-35624794 | Msa0020560:intron |
| GAGAGTGAAAATTCTTTCTT+TGG | 0.202144 | 1_1:-35625327 | Msa0020560:CDS |
| ACTGAAACAAGAGATAAAAT+TGG | 0.372858 | 1_1:-35626455 | Msa0020560:CDS |
| TTTGATGCAGATATGTTCAT+TGG | 0.378379 | 1_1:-35626008 | Msa0020560:intron |
| CCACAACCTTTGGTATTTGA+CGG | 0.390822 | 1_1:+35624547 | None:intergenic |
| CCTTTGGTATTTGACGGTTC+AGG | 0.412845 | 1_1:+35624553 | None:intergenic |
| GAGATAAAATTGGTGTCAAA+TGG | 0.413160 | 1_1:-35626445 | Msa0020560:CDS |
| GTTGTGGAAAACGGATGAAA+GGG | 0.442696 | 1_1:-35624531 | Msa0020560:CDS |
| GTTGGGAGTTATGAAAATAT+AGG | 0.448778 | 1_1:-35626089 | Msa0020560:CDS |
| AAATATTGAAGGAGCAAGTT+GGG | 0.451013 | 1_1:-35626106 | Msa0020560:CDS |
| TTTATAGATATATTTATGGC+TGG | 0.453272 | 1_1:-35625375 | Msa0020560:intron |
| ACATATTTCAGAGTGAGTTA+TGG | 0.453502 | 1_1:-35625122 | Msa0020560:CDS |
| AGAGTGAAAATTCTTTCTTT+GGG | 0.454732 | 1_1:-35625326 | Msa0020560:CDS |
| CAAATATTGAAGGAGCAAGT+TGG | 0.466116 | 1_1:-35626107 | Msa0020560:CDS |
| TATTTGATACTTTGAAAGAA+GGG | 0.468084 | 1_1:-35626532 | Msa0020560:CDS |
| TGGAATTGAAGGAACAAAAC+AGG | 0.473791 | 1_1:-35625082 | Msa0020560:CDS |
| GTATTTGATACTTTGAAAGA+AGG | 0.476271 | 1_1:-35626533 | Msa0020560:CDS |
| ATACCAAAGGTTGTGGAAAA+CGG | 0.477804 | 1_1:-35624540 | Msa0020560:CDS |
| CTCAAAAGAAGGATTTAAAG+TGG | 0.479356 | 1_1:-35626408 | Msa0020560:CDS |
| ATTGTTTAAATGCATGCATA+TGG | 0.486947 | 1_1:-35624734 | Msa0020560:CDS |
| TTCAGCTCAGCATCACACTT+TGG | 0.492382 | 1_1:+35626572 | None:intergenic |
| AGATATTGATTTCAAAAGCA+TGG | 0.494922 | 1_1:-35624762 | Msa0020560:CDS |
| TTCTATACTTGATAATGTTG+TGG | 0.499836 | 1_1:-35625040 | Msa0020560:intron |
| ATTTATGAAGAGGAATTTGT+GGG | 0.508797 | 1_1:+35624418 | None:intergenic |
| AATTTATGAAGAGGAATTTG+TGG | 0.514420 | 1_1:+35624417 | None:intergenic |
| TCGACGTGCATCCTCAAAGC+TGG | 0.514623 | 1_1:+35625189 | None:intergenic |
| GATATTGATTTCAAAAGCAT+GGG | 0.516861 | 1_1:-35624761 | Msa0020560:CDS |
| CCGTCAAATACCAAAGGTTG+TGG | 0.517647 | 1_1:-35624547 | Msa0020560:CDS |
| AAAGAAACAATTGTTAAGAT+CGG | 0.526889 | 1_1:-35626207 | Msa0020560:CDS |
| AAAGATAGATAAGCCTGGAT+TGG | 0.527667 | 1_1:-35626381 | Msa0020560:CDS |
| GGTTGTGGAAAACGGATGAA+AGG | 0.530143 | 1_1:-35624532 | Msa0020560:CDS |
| TGTGTAAATTGTGGAATTGA+AGG | 0.530191 | 1_1:-35625093 | Msa0020560:CDS |
| TCGATTTAGAGAAGCATGGT+AGG | 0.530992 | 1_1:-35625170 | Msa0020560:CDS |
| TACAACCCTCACTGTAAATG+AGG | 0.533912 | 1_1:+35624686 | None:intergenic |
| TAGAAAACAAGTCGGAGGAA+TGG | 0.535352 | 1_1:-35626598 | Msa0020560:CDS |
| AAAAGAAATTTGACACGGGA+GGG | 0.541490 | 1_1:-35626326 | Msa0020560:CDS |
| TCTTACCACAATTTATGAAG+AGG | 0.544607 | 1_1:+35624408 | None:intergenic |
| TGTGGAAAACGGATGAAAGG+GGG | 0.547137 | 1_1:-35624529 | Msa0020560:CDS |
| GAAAGGTTATCAAATATTGA+AGG | 0.553791 | 1_1:-35626117 | Msa0020560:CDS |
| TCATCACTAATAACCAATCC+AGG | 0.557233 | 1_1:+35626368 | None:intergenic |
| GCTGAGCTGAAACCTGTGAT+TGG | 0.560694 | 1_1:-35626560 | Msa0020560:CDS |
| TGGAATGCATGTGTAAATTG+TGG | 0.561229 | 1_1:-35625102 | Msa0020560:CDS |
| TCAAATACCTTACCAATCAC+AGG | 0.564058 | 1_1:+35626548 | None:intergenic |
| TTGTGGAAAACGGATGAAAG+GGG | 0.564062 | 1_1:-35624530 | Msa0020560:CDS |
| TTTAAATGCATGCATATGGC+TGG | 0.568389 | 1_1:-35624730 | Msa0020560:CDS |
| GTGGAAAACGGATGAAAGGG+GGG | 0.569156 | 1_1:-35624528 | Msa0020560:CDS |
| ATTTGATACTTTGAAAGAAG+GGG | 0.571831 | 1_1:-35626531 | Msa0020560:CDS |
| CTGCTCCTCATTTACAGTGA+GGG | 0.579878 | 1_1:-35624691 | Msa0020560:CDS |
| GCTAATGTGGGAACTTCGAA+AGG | 0.586629 | 1_1:-35626134 | Msa0020560:CDS |
| TCCTCAAAGCTGGAAAAGAG+TGG | 0.595349 | 1_1:+35625199 | None:intergenic |
| TGCTTGCAATAGAGCTAATG+TGG | 0.597170 | 1_1:-35626147 | Msa0020560:CDS |
| GCTGAAACCTGTGATTGGTA+AGG | 0.600549 | 1_1:-35626555 | Msa0020560:CDS |
| TTGTCTAATATGAAGAGCGA+TGG | 0.601654 | 1_1:-35624649 | Msa0020560:CDS |
| CGATTTAGAGAAGCATGGTA+GGG | 0.608691 | 1_1:-35625169 | Msa0020560:CDS |
| AACACCCTCTGATGATGTGG+AGG | 0.611936 | 1_1:-35624620 | Msa0020560:CDS |
| AACTCATCGAATTCTTCTGT+AGG | 0.615846 | 1_1:+35626620 | None:intergenic |
| ATCAACACCCTCTGATGATG+TGG | 0.617562 | 1_1:-35624623 | Msa0020560:CDS |
| AAAAGCCTCCACATCATCAG+AGG | 0.617969 | 1_1:+35624615 | None:intergenic |
| GTGTTCAAGAGAATTGATGA+TGG | 0.619383 | 1_1:-35626287 | Msa0020560:CDS |
| CACGGGAGGGATGTAATGCA+AGG | 0.621834 | 1_1:-35626313 | Msa0020560:CDS |
| GCTTGCAATAGAGCTAATGT+GGG | 0.639050 | 1_1:-35626146 | Msa0020560:CDS |
| TTGGTATTTGACGGTTCAGG+CGG | 0.646585 | 1_1:+35624556 | None:intergenic |
| CGATGAGTTAGAAAACAAGT+CGG | 0.649037 | 1_1:-35626606 | Msa0020560:CDS |
| AACAATTGTTAAGATCGGCA+AGG | 0.654408 | 1_1:-35626202 | Msa0020560:CDS |
| CCTGAACCGTCAAATACCAA+AGG | 0.658134 | 1_1:-35624553 | Msa0020560:CDS |
| TGAGTTAGAAAACAAGTCGG+AGG | 0.661664 | 1_1:-35626603 | Msa0020560:CDS |
| AAAGCCTCCACATCATCAGA+GGG | 0.674054 | 1_1:+35624616 | None:intergenic |
| CACGTCGATTTAGAGAAGCA+TGG | 0.677798 | 1_1:-35625174 | Msa0020560:CDS |
| ACTGCTCCTCATTTACAGTG+AGG | 0.695763 | 1_1:-35624692 | Msa0020560:CDS |
| AGCAACAACAAAAGAGAACG+AGG | 0.703541 | 1_1:-35624489 | Msa0020560:CDS |
| ATTCTGCTTTAGAAGCACAG+AGG | 0.737981 | 1_1:-35625254 | Msa0020560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTCTTTTTCTATTTTT+AGG | + | chr1_1:35624735-35624754 | None:intergenic | 10.0% |
| !!! | AAATTTCTTTTTCTATTTTT+AGG | + | chr1_1:35624735-35624754 | None:intergenic | 10.0% |
| !! | AATATATCTATAAAATAAGC+TGG | + | chr1_1:35625689-35625708 | None:intergenic | 15.0% |
| !! | AATATATCTATAAAATAAGC+TGG | + | chr1_1:35625689-35625708 | None:intergenic | 15.0% |
| !!! | TATTTGATACTTTGAAAGAA+GGG | - | chr1_1:35624538-35624557 | Msa0020560:CDS | 20.0% |
| !! | ATAGAAAAAGAAATTTGACA+CGG | - | chr1_1:35624739-35624758 | Msa0020560:CDS | 20.0% |
| !! | AAAGAAACAATTGTTAAGAT+CGG | - | chr1_1:35624863-35624882 | Msa0020560:intron | 20.0% |
| !!! | GAGATTTTCAAAAAATTTCA+AGG | - | chr1_1:35625015-35625034 | Msa0020560:intron | 20.0% |
| !!! | CAATTGAAAGTGTTTTTAAT+GGG | - | chr1_1:35625438-35625457 | Msa0020560:intron | 20.0% |
| !! | TCTTAAAAAACTTTCAGAAA+AGG | - | chr1_1:35625490-35625509 | Msa0020560:intron | 20.0% |
| !! | AAAATCATCATTCTCATTTA+AGG | + | chr1_1:35625525-35625544 | None:intergenic | 20.0% |
| !! | TTTATAGATATATTTATGGC+TGG | - | chr1_1:35625695-35625714 | Msa0020560:intron | 20.0% |
| !! | ACATATTCTTTCTGTATTAA+AGG | - | chr1_1:35626159-35626178 | Msa0020560:CDS | 20.0% |
| !! | CATATTCTTTCTGTATTAAA+GGG | - | chr1_1:35626160-35626179 | Msa0020560:CDS | 20.0% |
| !! | ATATTCTTTCTGTATTAAAG+GGG | - | chr1_1:35626161-35626180 | Msa0020560:CDS | 20.0% |
| !!! | TATTTGATACTTTGAAAGAA+GGG | - | chr1_1:35624538-35624557 | Msa0020560:CDS | 20.0% |
| !! | ATAGAAAAAGAAATTTGACA+CGG | - | chr1_1:35624739-35624758 | Msa0020560:CDS | 20.0% |
| !! | AAAGAAACAATTGTTAAGAT+CGG | - | chr1_1:35624863-35624882 | Msa0020560:intron | 20.0% |
| !!! | GAGATTTTCAAAAAATTTCA+AGG | - | chr1_1:35625015-35625034 | Msa0020560:intron | 20.0% |
| !!! | CAATTGAAAGTGTTTTTAAT+GGG | - | chr1_1:35625438-35625457 | Msa0020560:intron | 20.0% |
| !! | TCTTAAAAAACTTTCAGAAA+AGG | - | chr1_1:35625490-35625509 | Msa0020560:intron | 20.0% |
| !! | AAAATCATCATTCTCATTTA+AGG | + | chr1_1:35625525-35625544 | None:intergenic | 20.0% |
| !! | TTTATAGATATATTTATGGC+TGG | - | chr1_1:35625695-35625714 | Msa0020560:intron | 20.0% |
| !! | ACATATTCTTTCTGTATTAA+AGG | - | chr1_1:35626159-35626178 | Msa0020560:CDS | 20.0% |
| !! | CATATTCTTTCTGTATTAAA+GGG | - | chr1_1:35626160-35626179 | Msa0020560:CDS | 20.0% |
| !! | ATATTCTTTCTGTATTAAAG+GGG | - | chr1_1:35626161-35626180 | Msa0020560:CDS | 20.0% |
| !! | GTATTTGATACTTTGAAAGA+AGG | - | chr1_1:35624537-35624556 | Msa0020560:CDS | 25.0% |
| !! | ATTTGATACTTTGAAAGAAG+GGG | - | chr1_1:35624539-35624558 | Msa0020560:CDS | 25.0% |
| ! | ACTGAAACAAGAGATAAAAT+TGG | - | chr1_1:35624615-35624634 | Msa0020560:CDS | 25.0% |
| !! | TATTTTCTTTGCTCAAAAGA+AGG | - | chr1_1:35624651-35624670 | Msa0020560:CDS | 25.0% |
| ! | TAGAAAAAGAAATTTGACAC+GGG | - | chr1_1:35624740-35624759 | Msa0020560:CDS | 25.0% |
| ! | AGTATGACCTTCATAAAATT+TGG | + | chr1_1:35624823-35624842 | None:intergenic | 25.0% |
| !! | CTTAACAATTGTTTCTTTCT+AGG | + | chr1_1:35624861-35624880 | None:intergenic | 25.0% |
| ! | GAAAGGTTATCAAATATTGA+AGG | - | chr1_1:35624953-35624972 | Msa0020560:intron | 25.0% |
| !! | ATTATGTGTCTGATAATGAA+GGG | - | chr1_1:35625129-35625148 | Msa0020560:CDS | 25.0% |
| !! | GAAGTTAAAACATGTGTTTT+GGG | - | chr1_1:35625151-35625170 | Msa0020560:CDS | 25.0% |
| ! | CGAAAAAATTACTCTTTGTT+TGG | - | chr1_1:35625188-35625207 | Msa0020560:CDS | 25.0% |
| !!! | GCAATTGAAAGTGTTTTTAA+TGG | - | chr1_1:35625437-35625456 | Msa0020560:intron | 25.0% |
| ! | TAAAAAACTTTCAGAAAAGG+TGG | - | chr1_1:35625493-35625512 | Msa0020560:intron | 25.0% |
| ! | AAAAAACTTTCAGAAAAGGT+GGG | - | chr1_1:35625494-35625513 | Msa0020560:intron | 25.0% |
| ! | CCATTCAAATTCAAATTCTT+CGG | + | chr1_1:35625588-35625607 | None:intergenic | 25.0% |
| !!! | TATTATCAGTGATTTTGAGT+TGG | - | chr1_1:35625613-35625632 | Msa0020560:intron | 25.0% |
| ! | AGAGTGAAAATTCTTTCTTT+GGG | - | chr1_1:35625744-35625763 | Msa0020560:intron | 25.0% |
| !!! | AGCTTAATTTGGTTGAATTT+TGG | - | chr1_1:35625783-35625802 | Msa0020560:intron | 25.0% |
| !!! | TTCTATACTTGATAATGTTG+TGG | - | chr1_1:35626030-35626049 | Msa0020560:CDS | 25.0% |
| !!! | AGATATTGATTTCAAAAGCA+TGG | - | chr1_1:35626308-35626327 | Msa0020560:CDS | 25.0% |
| !!! | GATATTGATTTCAAAAGCAT+GGG | - | chr1_1:35626309-35626328 | Msa0020560:CDS | 25.0% |
| ! | ATTGTTTAAATGCATGCATA+TGG | - | chr1_1:35626336-35626355 | Msa0020560:CDS | 25.0% |
| !!! | TTGAATTTTTTCAGGTACAT+TGG | + | chr1_1:35626488-35626507 | None:intergenic | 25.0% |
| !! | GTATTTGATACTTTGAAAGA+AGG | - | chr1_1:35624537-35624556 | Msa0020560:CDS | 25.0% |
| !! | ATTTGATACTTTGAAAGAAG+GGG | - | chr1_1:35624539-35624558 | Msa0020560:CDS | 25.0% |
| ! | ACTGAAACAAGAGATAAAAT+TGG | - | chr1_1:35624615-35624634 | Msa0020560:CDS | 25.0% |
| !! | TATTTTCTTTGCTCAAAAGA+AGG | - | chr1_1:35624651-35624670 | Msa0020560:CDS | 25.0% |
| ! | TAGAAAAAGAAATTTGACAC+GGG | - | chr1_1:35624740-35624759 | Msa0020560:CDS | 25.0% |
| ! | AGTATGACCTTCATAAAATT+TGG | + | chr1_1:35624823-35624842 | None:intergenic | 25.0% |
| !! | CTTAACAATTGTTTCTTTCT+AGG | + | chr1_1:35624861-35624880 | None:intergenic | 25.0% |
| ! | GAAAGGTTATCAAATATTGA+AGG | - | chr1_1:35624953-35624972 | Msa0020560:intron | 25.0% |
| !! | ATTATGTGTCTGATAATGAA+GGG | - | chr1_1:35625129-35625148 | Msa0020560:CDS | 25.0% |
| !! | GAAGTTAAAACATGTGTTTT+GGG | - | chr1_1:35625151-35625170 | Msa0020560:CDS | 25.0% |
| ! | CGAAAAAATTACTCTTTGTT+TGG | - | chr1_1:35625188-35625207 | Msa0020560:CDS | 25.0% |
| !!! | GCAATTGAAAGTGTTTTTAA+TGG | - | chr1_1:35625437-35625456 | Msa0020560:intron | 25.0% |
| ! | TAAAAAACTTTCAGAAAAGG+TGG | - | chr1_1:35625493-35625512 | Msa0020560:intron | 25.0% |
| ! | AAAAAACTTTCAGAAAAGGT+GGG | - | chr1_1:35625494-35625513 | Msa0020560:intron | 25.0% |
| ! | CCATTCAAATTCAAATTCTT+CGG | + | chr1_1:35625588-35625607 | None:intergenic | 25.0% |
| !!! | TATTATCAGTGATTTTGAGT+TGG | - | chr1_1:35625613-35625632 | Msa0020560:intron | 25.0% |
| ! | AGAGTGAAAATTCTTTCTTT+GGG | - | chr1_1:35625744-35625763 | Msa0020560:intron | 25.0% |
| !!! | AGCTTAATTTGGTTGAATTT+TGG | - | chr1_1:35625783-35625802 | Msa0020560:intron | 25.0% |
| !!! | TTCTATACTTGATAATGTTG+TGG | - | chr1_1:35626030-35626049 | Msa0020560:CDS | 25.0% |
| !!! | AGATATTGATTTCAAAAGCA+TGG | - | chr1_1:35626308-35626327 | Msa0020560:CDS | 25.0% |
| !!! | GATATTGATTTCAAAAGCAT+GGG | - | chr1_1:35626309-35626328 | Msa0020560:CDS | 25.0% |
| ! | ATTGTTTAAATGCATGCATA+TGG | - | chr1_1:35626336-35626355 | Msa0020560:CDS | 25.0% |
| !!! | TTGAATTTTTTCAGGTACAT+TGG | + | chr1_1:35626488-35626507 | None:intergenic | 25.0% |
| AAAAATTATGCTCATGTTGC+TGG | - | chr1_1:35624573-35624592 | Msa0020560:CDS | 30.0% | |
| !! | GAGATAAAATTGGTGTCAAA+TGG | - | chr1_1:35624625-35624644 | Msa0020560:CDS | 30.0% |
| CTCAAAAGAAGGATTTAAAG+TGG | - | chr1_1:35624662-35624681 | Msa0020560:CDS | 30.0% | |
| GAAAAAAAGATAGATAAGCC+TGG | - | chr1_1:35624684-35624703 | Msa0020560:CDS | 30.0% | |
| !! | GAAGTGTCCAAATTTTATGA+AGG | - | chr1_1:35624813-35624832 | Msa0020560:intron | 30.0% |
| AAATATTGAAGGAGCAAGTT+GGG | - | chr1_1:35624964-35624983 | Msa0020560:intron | 30.0% | |
| GTTGGGAGTTATGAAAATAT+AGG | - | chr1_1:35624981-35625000 | Msa0020560:intron | 30.0% | |
| TTTGATGCAGATATGTTCAT+TGG | - | chr1_1:35625062-35625081 | Msa0020560:CDS | 30.0% | |
| ! | GATTATGTGTCTGATAATGA+AGG | - | chr1_1:35625128-35625147 | Msa0020560:CDS | 30.0% |
| ! | GGAAGTTAAAACATGTGTTT+TGG | - | chr1_1:35625150-35625169 | Msa0020560:CDS | 30.0% |
| ATCGTCAAAGTATAACCTTT+GGG | - | chr1_1:35625291-35625310 | Msa0020560:CDS | 30.0% | |
| !!! | TGAGACTTTTTTGAAAGCAA+TGG | - | chr1_1:35625361-35625380 | Msa0020560:CDS | 30.0% |
| !!! | GAGACTTTTTTGAAAGCAAT+GGG | - | chr1_1:35625362-35625381 | Msa0020560:CDS | 30.0% |
| TTCAAATTCAAATTCTTCGG+AGG | + | chr1_1:35625585-35625604 | None:intergenic | 30.0% | |
| CCGAAGAATTTGAATTTGAA+TGG | - | chr1_1:35625585-35625604 | Msa0020560:intron | 30.0% | |
| !!! | GATTTTGAGTTGGAAGAAAA+TGG | - | chr1_1:35625623-35625642 | Msa0020560:intron | 30.0% |
| GAGAGTGAAAATTCTTTCTT+TGG | - | chr1_1:35625743-35625762 | Msa0020560:intron | 30.0% | |
| CTTGAATACGAAGCTTAATT+TGG | - | chr1_1:35625772-35625791 | Msa0020560:intron | 30.0% | |
| ACATATTTCAGAGTGAGTTA+TGG | - | chr1_1:35625948-35625967 | Msa0020560:intron | 30.0% | |
| TGTGTAAATTGTGGAATTGA+AGG | - | chr1_1:35625977-35625996 | Msa0020560:intron | 30.0% | |
| TGTAAAATGTTTGACTCTGA+AGG | - | chr1_1:35626124-35626143 | Msa0020560:CDS | 30.0% | |
| CTATTGACAATGTAATTGCT+TGG | + | chr1_1:35626205-35626224 | None:intergenic | 30.0% | |
| CAAGCAATTACATTGTCAAT+AGG | - | chr1_1:35626203-35626222 | Msa0020560:CDS | 30.0% | |
| TTTCCATCACAATCAAATAC+AGG | + | chr1_1:35626253-35626272 | None:intergenic | 30.0% | |
| ! | TTGTGATGGAAATGTATTGA+AGG | - | chr1_1:35626261-35626280 | Msa0020560:CDS | 30.0% |
| ! | ATTGAAGGCATGTTCTAAAT+TGG | - | chr1_1:35626276-35626295 | Msa0020560:CDS | 30.0% |
| !!! | GGAAGAACTTGAATTTTTTC+AGG | + | chr1_1:35626496-35626515 | None:intergenic | 30.0% |
| AAAAATTATGCTCATGTTGC+TGG | - | chr1_1:35624573-35624592 | Msa0020560:CDS | 30.0% | |
| !! | GAGATAAAATTGGTGTCAAA+TGG | - | chr1_1:35624625-35624644 | Msa0020560:CDS | 30.0% |
| CTCAAAAGAAGGATTTAAAG+TGG | - | chr1_1:35624662-35624681 | Msa0020560:CDS | 30.0% | |
| GAAAAAAAGATAGATAAGCC+TGG | - | chr1_1:35624684-35624703 | Msa0020560:CDS | 30.0% | |
| !! | GAAGTGTCCAAATTTTATGA+AGG | - | chr1_1:35624813-35624832 | Msa0020560:intron | 30.0% |
| AAATATTGAAGGAGCAAGTT+GGG | - | chr1_1:35624964-35624983 | Msa0020560:intron | 30.0% | |
| GTTGGGAGTTATGAAAATAT+AGG | - | chr1_1:35624981-35625000 | Msa0020560:intron | 30.0% | |
| TTTGATGCAGATATGTTCAT+TGG | - | chr1_1:35625062-35625081 | Msa0020560:CDS | 30.0% | |
| ! | GATTATGTGTCTGATAATGA+AGG | - | chr1_1:35625128-35625147 | Msa0020560:CDS | 30.0% |
| ! | GGAAGTTAAAACATGTGTTT+TGG | - | chr1_1:35625150-35625169 | Msa0020560:CDS | 30.0% |
| ATCGTCAAAGTATAACCTTT+GGG | - | chr1_1:35625291-35625310 | Msa0020560:CDS | 30.0% | |
| !!! | TGAGACTTTTTTGAAAGCAA+TGG | - | chr1_1:35625361-35625380 | Msa0020560:CDS | 30.0% |
| !!! | GAGACTTTTTTGAAAGCAAT+GGG | - | chr1_1:35625362-35625381 | Msa0020560:CDS | 30.0% |
| TTCAAATTCAAATTCTTCGG+AGG | + | chr1_1:35625585-35625604 | None:intergenic | 30.0% | |
| CCGAAGAATTTGAATTTGAA+TGG | - | chr1_1:35625585-35625604 | Msa0020560:intron | 30.0% | |
| !!! | GATTTTGAGTTGGAAGAAAA+TGG | - | chr1_1:35625623-35625642 | Msa0020560:intron | 30.0% |
| GAGAGTGAAAATTCTTTCTT+TGG | - | chr1_1:35625743-35625762 | Msa0020560:intron | 30.0% | |
| CTTGAATACGAAGCTTAATT+TGG | - | chr1_1:35625772-35625791 | Msa0020560:intron | 30.0% | |
| ACATATTTCAGAGTGAGTTA+TGG | - | chr1_1:35625948-35625967 | Msa0020560:intron | 30.0% | |
| TGTGTAAATTGTGGAATTGA+AGG | - | chr1_1:35625977-35625996 | Msa0020560:intron | 30.0% | |
| TGTAAAATGTTTGACTCTGA+AGG | - | chr1_1:35626124-35626143 | Msa0020560:CDS | 30.0% | |
| CTATTGACAATGTAATTGCT+TGG | + | chr1_1:35626205-35626224 | None:intergenic | 30.0% | |
| CAAGCAATTACATTGTCAAT+AGG | - | chr1_1:35626203-35626222 | Msa0020560:CDS | 30.0% | |
| TTTCCATCACAATCAAATAC+AGG | + | chr1_1:35626253-35626272 | None:intergenic | 30.0% | |
| ! | TTGTGATGGAAATGTATTGA+AGG | - | chr1_1:35626261-35626280 | Msa0020560:CDS | 30.0% |
| ! | ATTGAAGGCATGTTCTAAAT+TGG | - | chr1_1:35626276-35626295 | Msa0020560:CDS | 30.0% |
| !!! | GGAAGAACTTGAATTTTTTC+AGG | + | chr1_1:35626496-35626515 | None:intergenic | 30.0% |
| AACTCATCGAATTCTTCTGT+AGG | + | chr1_1:35624453-35624472 | None:intergenic | 35.0% | |
| CGATGAGTTAGAAAACAAGT+CGG | - | chr1_1:35624464-35624483 | Msa0020560:CDS | 35.0% | |
| TCAAATACCTTACCAATCAC+AGG | + | chr1_1:35624525-35624544 | None:intergenic | 35.0% | |
| AAAGATAGATAAGCCTGGAT+TGG | - | chr1_1:35624689-35624708 | Msa0020560:CDS | 35.0% | |
| TCATCACTAATAACCAATCC+AGG | + | chr1_1:35624705-35624724 | None:intergenic | 35.0% | |
| AAAAAGAAATTTGACACGGG+AGG | - | chr1_1:35624743-35624762 | Msa0020560:CDS | 35.0% | |
| AAAAGAAATTTGACACGGGA+GGG | - | chr1_1:35624744-35624763 | Msa0020560:CDS | 35.0% | |
| GTGTTCAAGAGAATTGATGA+TGG | - | chr1_1:35624783-35624802 | Msa0020560:CDS | 35.0% | |
| AACAATTGTTAAGATCGGCA+AGG | - | chr1_1:35624868-35624887 | Msa0020560:intron | 35.0% | |
| CAAATATTGAAGGAGCAAGT+TGG | - | chr1_1:35624963-35624982 | Msa0020560:intron | 35.0% | |
| ! | TTACTCTTTGTTTGGAGATG+TGG | - | chr1_1:35625196-35625215 | Msa0020560:CDS | 35.0% |
| ! | AAGATTTTTGCACCATTCAC+CGG | - | chr1_1:35625257-35625276 | Msa0020560:CDS | 35.0% |
| TTGACGATGATGATTTACAC+CGG | + | chr1_1:35625279-35625298 | None:intergenic | 35.0% | |
| CATCGTCAAAGTATAACCTT+TGG | - | chr1_1:35625290-35625309 | Msa0020560:CDS | 35.0% | |
| TCGTCAAAGTATAACCTTTG+GGG | - | chr1_1:35625292-35625311 | Msa0020560:CDS | 35.0% | |
| AAAAAGAAGAGTCGTTTGTG+TGG | - | chr1_1:35625333-35625352 | Msa0020560:CDS | 35.0% | |
| !!! | ACTTTTTTGAAAGCAATGGG+TGG | - | chr1_1:35625365-35625384 | Msa0020560:CDS | 35.0% |
| !!! | CTTTTTTGAAAGCAATGGGT+GGG | - | chr1_1:35625366-35625385 | Msa0020560:CDS | 35.0% |
| GATAATAACAGATCAAGACC+AGG | - | chr1_1:35625403-35625422 | Msa0020560:intron | 35.0% | |
| ! | CTTCTCATAGATTTTGCATG+TGG | - | chr1_1:35625462-35625481 | Msa0020560:intron | 35.0% |
| ! | ATCGTTTCAAGTCATGTGTT+TGG | - | chr1_1:35625549-35625568 | Msa0020560:intron | 35.0% |
| !! | TTGAGTTGGAAGAAAATGGT+TGG | - | chr1_1:35625627-35625646 | Msa0020560:intron | 35.0% |
| ! | TGTATGATCTTAGAAGCATG+TGG | - | chr1_1:35625660-35625679 | Msa0020560:intron | 35.0% |
| ! | ATTTTCACTCTCTGATCTTG+AGG | + | chr1_1:35625735-35625754 | None:intergenic | 35.0% |
| TGGAATGCATGTGTAAATTG+TGG | - | chr1_1:35625968-35625987 | Msa0020560:intron | 35.0% | |
| TGGAATTGAAGGAACAAAAC+AGG | - | chr1_1:35625988-35626007 | Msa0020560:intron | 35.0% | |
| !! | CTTGATAATGTTGTGGTCAA+TGG | - | chr1_1:35626037-35626056 | Msa0020560:CDS | 35.0% |
| ACAGAAAGAATATGTCGACA+TGG | + | chr1_1:35626154-35626173 | None:intergenic | 35.0% | |
| GCAATTACATTGTCAATAGG+TGG | - | chr1_1:35626206-35626225 | Msa0020560:CDS | 35.0% | |
| TGTCAATAGGTGGACAAAAT+TGG | - | chr1_1:35626216-35626235 | Msa0020560:CDS | 35.0% | |
| AGACCTGTATTTGATTGTGA+TGG | - | chr1_1:35626247-35626266 | Msa0020560:CDS | 35.0% | |
| TTTAAATGCATGCATATGGC+TGG | - | chr1_1:35626340-35626359 | Msa0020560:CDS | 35.0% | |
| TTGTCTAATATGAAGAGCGA+TGG | - | chr1_1:35626421-35626440 | Msa0020560:CDS | 35.0% | |
| ATACCAAAGGTTGTGGAAAA+CGG | - | chr1_1:35626530-35626549 | Msa0020560:CDS | 35.0% | |
| AACTCATCGAATTCTTCTGT+AGG | + | chr1_1:35624453-35624472 | None:intergenic | 35.0% | |
| CGATGAGTTAGAAAACAAGT+CGG | - | chr1_1:35624464-35624483 | Msa0020560:CDS | 35.0% | |
| TCAAATACCTTACCAATCAC+AGG | + | chr1_1:35624525-35624544 | None:intergenic | 35.0% | |
| AAAGATAGATAAGCCTGGAT+TGG | - | chr1_1:35624689-35624708 | Msa0020560:CDS | 35.0% | |
| TCATCACTAATAACCAATCC+AGG | + | chr1_1:35624705-35624724 | None:intergenic | 35.0% | |
| AAAAAGAAATTTGACACGGG+AGG | - | chr1_1:35624743-35624762 | Msa0020560:CDS | 35.0% | |
| AAAAGAAATTTGACACGGGA+GGG | - | chr1_1:35624744-35624763 | Msa0020560:CDS | 35.0% | |
| GTGTTCAAGAGAATTGATGA+TGG | - | chr1_1:35624783-35624802 | Msa0020560:CDS | 35.0% | |
| AACAATTGTTAAGATCGGCA+AGG | - | chr1_1:35624868-35624887 | Msa0020560:intron | 35.0% | |
| CAAATATTGAAGGAGCAAGT+TGG | - | chr1_1:35624963-35624982 | Msa0020560:intron | 35.0% | |
| ! | TTACTCTTTGTTTGGAGATG+TGG | - | chr1_1:35625196-35625215 | Msa0020560:CDS | 35.0% |
| ! | AAGATTTTTGCACCATTCAC+CGG | - | chr1_1:35625257-35625276 | Msa0020560:CDS | 35.0% |
| TTGACGATGATGATTTACAC+CGG | + | chr1_1:35625279-35625298 | None:intergenic | 35.0% | |
| CATCGTCAAAGTATAACCTT+TGG | - | chr1_1:35625290-35625309 | Msa0020560:CDS | 35.0% | |
| TCGTCAAAGTATAACCTTTG+GGG | - | chr1_1:35625292-35625311 | Msa0020560:CDS | 35.0% | |
| AAAAAGAAGAGTCGTTTGTG+TGG | - | chr1_1:35625333-35625352 | Msa0020560:CDS | 35.0% | |
| !!! | ACTTTTTTGAAAGCAATGGG+TGG | - | chr1_1:35625365-35625384 | Msa0020560:CDS | 35.0% |
| !!! | CTTTTTTGAAAGCAATGGGT+GGG | - | chr1_1:35625366-35625385 | Msa0020560:CDS | 35.0% |
| GATAATAACAGATCAAGACC+AGG | - | chr1_1:35625403-35625422 | Msa0020560:intron | 35.0% | |
| ! | CTTCTCATAGATTTTGCATG+TGG | - | chr1_1:35625462-35625481 | Msa0020560:intron | 35.0% |
| ! | ATCGTTTCAAGTCATGTGTT+TGG | - | chr1_1:35625549-35625568 | Msa0020560:intron | 35.0% |
| !! | TTGAGTTGGAAGAAAATGGT+TGG | - | chr1_1:35625627-35625646 | Msa0020560:intron | 35.0% |
| ! | TGTATGATCTTAGAAGCATG+TGG | - | chr1_1:35625660-35625679 | Msa0020560:intron | 35.0% |
| ! | ATTTTCACTCTCTGATCTTG+AGG | + | chr1_1:35625735-35625754 | None:intergenic | 35.0% |
| TGGAATGCATGTGTAAATTG+TGG | - | chr1_1:35625968-35625987 | Msa0020560:intron | 35.0% | |
| TGGAATTGAAGGAACAAAAC+AGG | - | chr1_1:35625988-35626007 | Msa0020560:intron | 35.0% | |
| !! | CTTGATAATGTTGTGGTCAA+TGG | - | chr1_1:35626037-35626056 | Msa0020560:CDS | 35.0% |
| ACAGAAAGAATATGTCGACA+TGG | + | chr1_1:35626154-35626173 | None:intergenic | 35.0% | |
| GCAATTACATTGTCAATAGG+TGG | - | chr1_1:35626206-35626225 | Msa0020560:CDS | 35.0% | |
| TGTCAATAGGTGGACAAAAT+TGG | - | chr1_1:35626216-35626235 | Msa0020560:CDS | 35.0% | |
| AGACCTGTATTTGATTGTGA+TGG | - | chr1_1:35626247-35626266 | Msa0020560:CDS | 35.0% | |
| TTTAAATGCATGCATATGGC+TGG | - | chr1_1:35626340-35626359 | Msa0020560:CDS | 35.0% | |
| TTGTCTAATATGAAGAGCGA+TGG | - | chr1_1:35626421-35626440 | Msa0020560:CDS | 35.0% | |
| ATACCAAAGGTTGTGGAAAA+CGG | - | chr1_1:35626530-35626549 | Msa0020560:CDS | 35.0% | |
| TGAGTTAGAAAACAAGTCGG+AGG | - | chr1_1:35624467-35624486 | Msa0020560:CDS | 40.0% | |
| TAGAAAACAAGTCGGAGGAA+TGG | - | chr1_1:35624472-35624491 | Msa0020560:CDS | 40.0% | |
| TGCTTGCAATAGAGCTAATG+TGG | - | chr1_1:35624923-35624942 | Msa0020560:intron | 40.0% | |
| GCTTGCAATAGAGCTAATGT+GGG | - | chr1_1:35624924-35624943 | Msa0020560:intron | 40.0% | |
| !! | AAACATGTGTTTTGGGCTGA+TGG | - | chr1_1:35625158-35625177 | Msa0020560:CDS | 40.0% |
| TGATGATTTACACCGGTGAA+TGG | + | chr1_1:35625272-35625291 | None:intergenic | 40.0% | |
| ATGTAAAAATGCAGCCCCAA+AGG | + | chr1_1:35625309-35625328 | None:intergenic | 40.0% | |
| CAATTGCATTTGTCATAGCC+TGG | + | chr1_1:35625424-35625443 | None:intergenic | 40.0% | |
| AAACTTTCAGAAAAGGTGGG+TGG | - | chr1_1:35625497-35625516 | Msa0020560:intron | 40.0% | |
| ! | CAAGTCATGTGTTTGGAACT+CGG | - | chr1_1:35625556-35625575 | Msa0020560:intron | 40.0% |
| !! | ATTCTGCTTTAGAAGCACAG+AGG | - | chr1_1:35625816-35625835 | Msa0020560:intron | 40.0% |
| ! | TCGATTTAGAGAAGCATGGT+AGG | - | chr1_1:35625900-35625919 | Msa0020560:intron | 40.0% |
| ! | CGATTTAGAGAAGCATGGTA+GGG | - | chr1_1:35625901-35625920 | Msa0020560:intron | 40.0% |
| CTTTCTGTATTAAAGGGGAG+AGG | - | chr1_1:35626166-35626185 | Msa0020560:CDS | 40.0% | |
| TACAACCCTCACTGTAAATG+AGG | + | chr1_1:35626387-35626406 | None:intergenic | 40.0% | |
| ! | GATGATGTGGAGGCTTTTAT+CGG | - | chr1_1:35626460-35626479 | Msa0020560:CDS | 40.0% |
| CCACAACCTTTGGTATTTGA+CGG | + | chr1_1:35626526-35626545 | None:intergenic | 40.0% | |
| GTTGTGGAAAACGGATGAAA+GGG | - | chr1_1:35626539-35626558 | Msa0020560:CDS | 40.0% | |
| TTGTGGAAAACGGATGAAAG+GGG | - | chr1_1:35626540-35626559 | Msa0020560:CDS | 40.0% | |
| AGCAACAACAAAAGAGAACG+AGG | - | chr1_1:35626581-35626600 | Msa0020560:CDS | 40.0% | |
| TGAGTTAGAAAACAAGTCGG+AGG | - | chr1_1:35624467-35624486 | Msa0020560:CDS | 40.0% | |
| TAGAAAACAAGTCGGAGGAA+TGG | - | chr1_1:35624472-35624491 | Msa0020560:CDS | 40.0% | |
| TGCTTGCAATAGAGCTAATG+TGG | - | chr1_1:35624923-35624942 | Msa0020560:intron | 40.0% | |
| GCTTGCAATAGAGCTAATGT+GGG | - | chr1_1:35624924-35624943 | Msa0020560:intron | 40.0% | |
| !! | AAACATGTGTTTTGGGCTGA+TGG | - | chr1_1:35625158-35625177 | Msa0020560:CDS | 40.0% |
| TGATGATTTACACCGGTGAA+TGG | + | chr1_1:35625272-35625291 | None:intergenic | 40.0% | |
| ATGTAAAAATGCAGCCCCAA+AGG | + | chr1_1:35625309-35625328 | None:intergenic | 40.0% | |
| CAATTGCATTTGTCATAGCC+TGG | + | chr1_1:35625424-35625443 | None:intergenic | 40.0% | |
| AAACTTTCAGAAAAGGTGGG+TGG | - | chr1_1:35625497-35625516 | Msa0020560:intron | 40.0% | |
| ! | CAAGTCATGTGTTTGGAACT+CGG | - | chr1_1:35625556-35625575 | Msa0020560:intron | 40.0% |
| !! | ATTCTGCTTTAGAAGCACAG+AGG | - | chr1_1:35625816-35625835 | Msa0020560:intron | 40.0% |
| ! | TCGATTTAGAGAAGCATGGT+AGG | - | chr1_1:35625900-35625919 | Msa0020560:intron | 40.0% |
| ! | CGATTTAGAGAAGCATGGTA+GGG | - | chr1_1:35625901-35625920 | Msa0020560:intron | 40.0% |
| CTTTCTGTATTAAAGGGGAG+AGG | - | chr1_1:35626166-35626185 | Msa0020560:CDS | 40.0% | |
| TACAACCCTCACTGTAAATG+AGG | + | chr1_1:35626387-35626406 | None:intergenic | 40.0% | |
| ! | GATGATGTGGAGGCTTTTAT+CGG | - | chr1_1:35626460-35626479 | Msa0020560:CDS | 40.0% |
| CCACAACCTTTGGTATTTGA+CGG | + | chr1_1:35626526-35626545 | None:intergenic | 40.0% | |
| GTTGTGGAAAACGGATGAAA+GGG | - | chr1_1:35626539-35626558 | Msa0020560:CDS | 40.0% | |
| TTGTGGAAAACGGATGAAAG+GGG | - | chr1_1:35626540-35626559 | Msa0020560:CDS | 40.0% | |
| AGCAACAACAAAAGAGAACG+AGG | - | chr1_1:35626581-35626600 | Msa0020560:CDS | 40.0% | |
| TTCAGCTCAGCATCACACTT+TGG | + | chr1_1:35624501-35624520 | None:intergenic | 45.0% | |
| GCTGAAACCTGTGATTGGTA+AGG | - | chr1_1:35624515-35624534 | Msa0020560:CDS | 45.0% | |
| GCTAATGTGGGAACTTCGAA+AGG | - | chr1_1:35624936-35624955 | Msa0020560:intron | 45.0% | |
| ! | TCCACTCTTTTCCAGCTTTG+AGG | - | chr1_1:35625870-35625889 | Msa0020560:intron | 45.0% |
| TCCTCAAAGCTGGAAAAGAG+TGG | + | chr1_1:35625874-35625893 | None:intergenic | 45.0% | |
| !! | CACGTCGATTTAGAGAAGCA+TGG | - | chr1_1:35625896-35625915 | Msa0020560:intron | 45.0% |
| TGTTGTGGTCAATGGCACAA+AGG | - | chr1_1:35626045-35626064 | Msa0020560:CDS | 45.0% | |
| ACTGCTCCTCATTTACAGTG+AGG | - | chr1_1:35626378-35626397 | Msa0020560:CDS | 45.0% | |
| CTGCTCCTCATTTACAGTGA+GGG | - | chr1_1:35626379-35626398 | Msa0020560:CDS | 45.0% | |
| ! | ATCAACACCCTCTGATGATG+TGG | - | chr1_1:35626447-35626466 | Msa0020560:CDS | 45.0% |
| AAAGCCTCCACATCATCAGA+GGG | + | chr1_1:35626457-35626476 | None:intergenic | 45.0% | |
| AAAAGCCTCCACATCATCAG+AGG | + | chr1_1:35626458-35626477 | None:intergenic | 45.0% | |
| TTGGTATTTGACGGTTCAGG+CGG | + | chr1_1:35626517-35626536 | None:intergenic | 45.0% | |
| CCTTTGGTATTTGACGGTTC+AGG | + | chr1_1:35626520-35626539 | None:intergenic | 45.0% | |
| CCTGAACCGTCAAATACCAA+AGG | - | chr1_1:35626517-35626536 | Msa0020560:CDS | 45.0% | |
| CCGTCAAATACCAAAGGTTG+TGG | - | chr1_1:35626523-35626542 | Msa0020560:CDS | 45.0% | |
| ! | CATCCGTTTTCCACAACCTT+TGG | + | chr1_1:35626536-35626555 | None:intergenic | 45.0% |
| GGTTGTGGAAAACGGATGAA+AGG | - | chr1_1:35626538-35626557 | Msa0020560:CDS | 45.0% | |
| TGTGGAAAACGGATGAAAGG+GGG | - | chr1_1:35626541-35626560 | Msa0020560:CDS | 45.0% | |
| TTCAGCTCAGCATCACACTT+TGG | + | chr1_1:35624501-35624520 | None:intergenic | 45.0% | |
| GCTGAAACCTGTGATTGGTA+AGG | - | chr1_1:35624515-35624534 | Msa0020560:CDS | 45.0% | |
| GCTAATGTGGGAACTTCGAA+AGG | - | chr1_1:35624936-35624955 | Msa0020560:intron | 45.0% | |
| ! | TCCACTCTTTTCCAGCTTTG+AGG | - | chr1_1:35625870-35625889 | Msa0020560:intron | 45.0% |
| TCCTCAAAGCTGGAAAAGAG+TGG | + | chr1_1:35625874-35625893 | None:intergenic | 45.0% | |
| !! | CACGTCGATTTAGAGAAGCA+TGG | - | chr1_1:35625896-35625915 | Msa0020560:intron | 45.0% |
| TGTTGTGGTCAATGGCACAA+AGG | - | chr1_1:35626045-35626064 | Msa0020560:CDS | 45.0% | |
| ACTGCTCCTCATTTACAGTG+AGG | - | chr1_1:35626378-35626397 | Msa0020560:CDS | 45.0% | |
| CTGCTCCTCATTTACAGTGA+GGG | - | chr1_1:35626379-35626398 | Msa0020560:CDS | 45.0% | |
| ! | ATCAACACCCTCTGATGATG+TGG | - | chr1_1:35626447-35626466 | Msa0020560:CDS | 45.0% |
| AAAGCCTCCACATCATCAGA+GGG | + | chr1_1:35626457-35626476 | None:intergenic | 45.0% | |
| AAAAGCCTCCACATCATCAG+AGG | + | chr1_1:35626458-35626477 | None:intergenic | 45.0% | |
| TTGGTATTTGACGGTTCAGG+CGG | + | chr1_1:35626517-35626536 | None:intergenic | 45.0% | |
| CCTTTGGTATTTGACGGTTC+AGG | + | chr1_1:35626520-35626539 | None:intergenic | 45.0% | |
| CCTGAACCGTCAAATACCAA+AGG | - | chr1_1:35626517-35626536 | Msa0020560:CDS | 45.0% | |
| CCGTCAAATACCAAAGGTTG+TGG | - | chr1_1:35626523-35626542 | Msa0020560:CDS | 45.0% | |
| ! | CATCCGTTTTCCACAACCTT+TGG | + | chr1_1:35626536-35626555 | None:intergenic | 45.0% |
| GGTTGTGGAAAACGGATGAA+AGG | - | chr1_1:35626538-35626557 | Msa0020560:CDS | 45.0% | |
| TGTGGAAAACGGATGAAAGG+GGG | - | chr1_1:35626541-35626560 | Msa0020560:CDS | 45.0% | |
| !!! | TTATTTTATAGATATATTTA+TGG | - | chr1_1:35625691-35625710 | Msa0020560:intron | 5.0% |
| !!! | TTATTTTATAGATATATTTA+TGG | - | chr1_1:35625691-35625710 | Msa0020560:intron | 5.0% |
| GCTGAGCTGAAACCTGTGAT+TGG | - | chr1_1:35624510-35624529 | Msa0020560:CDS | 50.0% | |
| ! | AACACCCTCTGATGATGTGG+AGG | - | chr1_1:35626450-35626469 | Msa0020560:CDS | 50.0% |
| GTGGAAAACGGATGAAAGGG+GGG | - | chr1_1:35626542-35626561 | Msa0020560:CDS | 50.0% | |
| GATGAAAGGGGGGAAAGAGA+AGG | - | chr1_1:35626552-35626571 | Msa0020560:CDS | 50.0% | |
| GCTGAGCTGAAACCTGTGAT+TGG | - | chr1_1:35624510-35624529 | Msa0020560:CDS | 50.0% | |
| ! | AACACCCTCTGATGATGTGG+AGG | - | chr1_1:35626450-35626469 | Msa0020560:CDS | 50.0% |
| GTGGAAAACGGATGAAAGGG+GGG | - | chr1_1:35626542-35626561 | Msa0020560:CDS | 50.0% | |
| GATGAAAGGGGGGAAAGAGA+AGG | - | chr1_1:35626552-35626571 | Msa0020560:CDS | 50.0% | |
| CACGGGAGGGATGTAATGCA+AGG | - | chr1_1:35624757-35624776 | Msa0020560:CDS | 55.0% | |
| TCGACGTGCATCCTCAAAGC+TGG | + | chr1_1:35625884-35625903 | None:intergenic | 55.0% | |
| CACGGGAGGGATGTAATGCA+AGG | - | chr1_1:35624757-35624776 | Msa0020560:CDS | 55.0% | |
| TCGACGTGCATCCTCAAAGC+TGG | + | chr1_1:35625884-35625903 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 35624420 | 35626672 | 35624420 | ID=Msa0020560;Name=Msa0020560 |
| chr1_1 | mRNA | 35624420 | 35626672 | 35624420 | ID=Msa0020560-mRNA-1;Parent=Msa0020560;Name=Msa0020560-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0.5|0.66|3|0|467 |
| chr1_1 | exon | 35626009 | 35626672 | 35626009 | ID=Msa0020560-mRNA-1:exon:11382;Parent=Msa0020560-mRNA-1 |
| chr1_1 | exon | 35625041 | 35625390 | 35625041 | ID=Msa0020560-mRNA-1:exon:11381;Parent=Msa0020560-mRNA-1 |
| chr1_1 | exon | 35624420 | 35624809 | 35624420 | ID=Msa0020560-mRNA-1:exon:11380;Parent=Msa0020560-mRNA-1 |
| chr1_1 | CDS | 35626009 | 35626672 | 35626009 | ID=Msa0020560-mRNA-1:cds;Parent=Msa0020560-mRNA-1 |
| chr1_1 | CDS | 35625041 | 35625390 | 35625041 | ID=Msa0020560-mRNA-1:cds;Parent=Msa0020560-mRNA-1 |
| chr1_1 | CDS | 35624420 | 35624809 | 35624420 | ID=Msa0020560-mRNA-1:cds;Parent=Msa0020560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
