AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0021690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021690 MtrunA17_Chr1g0173541 73.262 187 28 2 42 217 207 382 4.66e-90 274
Msa0021690 MtrunA17_Chr7g0257751 74.033 181 37 2 42 217 213 388 4.71e-87 266
Msa0021690 MtrunA17_Chr4g0059951 61.497 187 50 2 42 217 228 403 1.80e-72 229
Msa0021690 MtrunA17_Chr7g0242561 60.000 195 55 3 34 217 204 386 2.10e-70 223
Msa0021690 MtrunA17_Chr5g0448721 56.425 179 72 2 42 217 251 426 2.32e-62 203
Msa0021690 MtrunA17_Chr4g0033371 53.191 188 66 2 42 218 227 403 1.06e-61 201
Msa0021690 MtrunA17_Chr0c02g0489761 54.872 195 64 3 35 218 228 409 6.37e-61 199
Msa0021690 MtrunA17_Chr5g0397101 54.098 183 63 2 45 217 225 396 2.69e-60 197
Msa0021690 MtrunA17_Chr8g0385341 52.261 199 80 3 26 217 170 360 3.71e-60 196
Msa0021690 MtrunA17_Chr1g0200601 49.749 199 99 1 19 217 163 360 3.96e-60 196
Msa0021690 MtrunA17_Chr1g0170281 55.191 183 68 2 42 217 273 448 6.90e-60 197
Msa0021690 MtrunA17_Chr1g0176751 53.297 182 73 2 42 217 279 454 1.03e-59 197
Msa0021690 MtrunA17_Chr3g0131181 51.832 191 77 3 34 217 177 359 3.99e-59 194
Msa0021690 MtrunA17_Chr1g0176421 53.005 183 72 2 42 217 316 491 1.42e-58 194
Msa0021690 MtrunA17_Chr8g0387671 53.297 182 73 2 42 217 221 396 1.97e-58 192
Msa0021690 MtrunA17_Chr5g0441691 51.596 188 69 2 42 218 223 399 2.12e-58 192
Msa0021690 MtrunA17_Chr4g0074811 51.064 188 70 2 42 218 246 422 1.94e-57 190
Msa0021690 MtrunA17_Chr3g0098951 52.688 186 67 2 42 217 239 413 5.42e-56 186
Msa0021690 MtrunA17_Chr5g0444171 51.872 187 68 2 42 217 247 422 3.35e-55 184
Msa0021690 MtrunA17_Chr1g0157131 50.532 188 71 2 42 218 229 405 8.79e-55 182
Msa0021690 MtrunA17_Chr7g0267751 48.691 191 83 3 34 217 283 465 8.27e-53 179
Msa0021690 MtrunA17_Chr4g0074791 43.878 196 95 4 29 218 240 426 2.22e-46 160
Msa0021690 MtrunA17_Chr5g0405421 43.956 182 92 2 42 218 256 432 2.43e-42 150
Msa0021690 MtrunA17_Chr5g0444191 64.948 97 34 0 42 138 63 159 4.30e-41 139
Msa0021690 MtrunA17_Chr5g0402551 38.462 182 99 2 43 218 294 468 3.42e-39 142
Msa0021690 MtrunA17_Chr8g0374701 37.838 185 94 3 43 217 288 461 3.04e-37 136
Msa0021690 MtrunA17_Chr7g0267771 59.000 100 41 0 42 141 243 342 7.87e-37 134
Msa0021690 MtrunA17_Chr4g0045261 37.569 181 100 2 43 217 297 470 1.34e-36 134
Msa0021690 MtrunA17_Chr7g0256001 38.202 178 104 2 43 217 301 475 3.18e-36 134
Msa0021690 MtrunA17_Chr3g0127571 38.043 184 93 4 43 217 298 469 9.15e-35 129
Msa0021690 MtrunA17_Chr7g0276111 35.676 185 99 3 43 218 304 477 1.23e-34 129
Msa0021690 MtrunA17_Chr1g0203881 40.845 142 71 2 27 168 182 310 5.59e-28 110
Msa0021690 MtrunA17_Chr1g0190131 41.837 98 56 1 42 138 160 257 2.00e-23 94.7
Msa0021690 MtrunA17_Chr7g0274941 40.000 100 58 1 42 139 169 268 1.35e-19 84.7
Msa0021690 MtrunA17_Chr3g0132591 40.816 98 58 0 42 139 257 354 1.93e-19 85.9
Msa0021690 MtrunA17_Chr7g0266031 39.048 105 59 4 36 138 714 815 2.25e-14 71.6
Msa0021690 MtrunA17_Chr2g0302431 44.318 88 43 4 50 135 182 265 3.91e-14 70.5
Msa0021690 MtrunA17_Chr6g0478601 40.404 99 49 3 49 142 301 394 5.24e-14 70.5
Msa0021690 MtrunA17_Chr5g0441771 36.364 121 56 3 94 214 2 101 1.39e-13 64.3
Msa0021690 MtrunA17_Chr8g0355131 33.803 142 72 4 48 178 208 338 4.04e-13 67.8
Msa0021690 MtrunA17_Chr4g0063881 35.833 120 67 5 24 139 145 258 7.08e-13 67.0
Msa0021690 MtrunA17_Chr4g0001331 39.130 92 50 3 50 139 181 268 2.38e-12 65.5
Msa0021690 MtrunA17_Chr4g0008561 37.634 93 55 3 48 138 178 269 7.51e-12 63.9
Msa0021690 MtrunA17_Chr6g0453681 38.000 100 56 2 42 139 170 265 8.44e-12 63.9
Msa0021690 MtrunA17_Chr6g0468751 38.000 100 56 2 42 139 170 265 8.53e-12 63.9
Msa0021690 MtrunA17_Chr4g0018201 42.045 88 49 2 48 134 947 1033 9.05e-12 63.9
Msa0021690 MtrunA17_Chr5g0428981 42.045 88 49 2 48 134 951 1037 1.37e-11 63.5
Msa0021690 MtrunA17_Chr1g0167311 39.175 97 56 3 49 144 316 410 1.50e-11 63.2
Msa0021690 MtrunA17_Chr3g0132671 36.000 100 58 3 42 139 200 295 1.68e-11 62.8
Msa0021690 MtrunA17_Chr1g0166101 40.217 92 49 4 50 139 186 273 4.17e-11 61.6
Msa0021690 MtrunA17_Chr8g0353621 33.333 93 59 2 48 139 165 255 5.35e-11 60.8
Msa0021690 MtrunA17_Chr2g0333821 40.860 93 47 5 50 139 175 262 6.93e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021690 AT3G57530.2 68.984 187 36 2 42 217 218 393 1.03e-83 255
Msa0021690 AT3G57530.1 68.984 187 36 2 42 217 218 393 7.35e-83 256
Msa0021690 AT5G12480.2 69.101 178 51 2 42 217 120 295 2.01e-80 247
Msa0021690 AT5G12480.1 69.101 178 51 2 42 217 214 389 2.29e-79 247
Msa0021690 AT2G41860.1 71.910 178 46 2 42 217 209 384 3.74e-79 246
Msa0021690 AT2G41860.2 71.348 178 47 2 42 217 209 384 1.03e-78 245
Msa0021690 AT5G19450.2 69.101 178 51 2 42 217 212 387 1.43e-78 245
Msa0021690 AT5G19450.1 69.101 178 51 2 42 217 212 387 1.43e-78 245
Msa0021690 AT3G51850.3 60.513 195 54 3 34 217 202 384 9.84e-72 224
Msa0021690 AT3G51850.2 60.513 195 54 3 34 217 202 384 3.16e-71 225
Msa0021690 AT3G51850.1 60.513 195 54 3 34 217 202 384 8.21e-71 225
Msa0021690 AT1G74740.1 59.487 195 56 3 34 217 207 389 8.68e-69 220
Msa0021690 AT1G18890.1 57.219 187 58 2 42 217 218 393 2.31e-66 214
Msa0021690 AT2G31500.1 53.202 203 72 3 26 217 206 396 9.70e-63 205
Msa0021690 AT4G35310.2 55.866 179 73 2 42 217 252 427 1.72e-62 204
Msa0021690 AT4G35310.1 55.866 179 73 2 42 217 252 427 1.72e-62 204
Msa0021690 AT2G17290.1 55.307 179 74 2 42 217 240 415 1.88e-61 201
Msa0021690 AT2G17290.2 55.307 179 74 2 42 217 240 415 1.88e-61 201
Msa0021690 AT4G38230.1 53.631 179 77 2 42 217 35 210 1.08e-60 193
Msa0021690 AT4G09570.1 51.471 204 88 4 19 217 158 355 1.26e-60 197
Msa0021690 AT4G23650.1 54.545 187 63 3 42 217 233 408 2.64e-60 197
Msa0021690 AT4G38230.4 53.631 179 77 2 42 217 179 354 1.88e-59 194
Msa0021690 AT4G38230.3 53.631 179 77 2 42 217 179 354 1.88e-59 194
Msa0021690 AT4G38230.2 53.631 179 77 2 42 217 209 384 3.28e-59 194
Msa0021690 AT5G12180.1 51.232 203 76 3 27 218 214 404 2.66e-58 192
Msa0021690 AT1G35670.1 48.558 208 88 4 19 217 159 356 5.92e-58 191
Msa0021690 AT3G10660.2 52.151 186 67 3 43 217 342 516 9.28e-58 193
Msa0021690 AT3G10660.1 52.151 186 67 3 43 217 342 516 9.28e-58 193
Msa0021690 AT1G50700.3 53.005 183 74 2 42 218 228 404 1.17e-56 187
Msa0021690 AT5G04870.1 51.630 184 67 3 45 217 308 480 1.26e-56 189
Msa0021690 AT1G76040.1 48.500 200 88 3 24 217 13 203 1.35e-56 182
Msa0021690 AT1G76040.4 48.500 200 88 3 24 217 13 203 1.35e-56 182
Msa0021690 AT2G38910.1 51.705 176 85 0 42 217 289 464 1.69e-56 188
Msa0021690 AT5G19360.1 50.246 203 78 3 27 218 209 399 2.13e-56 187
Msa0021690 AT1G50700.1 53.005 183 74 2 42 218 228 404 2.28e-56 187
Msa0021690 AT1G50700.2 53.005 183 74 2 42 218 228 404 4.43e-56 187
Msa0021690 AT3G20410.2 50.820 183 78 2 42 218 246 422 2.33e-55 184
Msa0021690 AT3G20410.1 50.820 183 78 2 42 218 246 422 2.33e-55 184
Msa0021690 AT4G04720.2 50.802 187 71 2 42 218 235 410 1.37e-54 182
Msa0021690 AT4G04720.1 50.802 187 71 2 42 218 235 410 1.37e-54 182
Msa0021690 AT1G76040.3 52.198 182 74 2 42 217 267 441 1.77e-54 182
Msa0021690 AT1G76040.2 52.198 182 74 2 42 217 267 441 3.58e-54 182
Msa0021690 AT4G04740.4 51.337 187 70 2 42 218 224 399 1.84e-53 179
Msa0021690 AT4G04740.6 51.337 187 70 2 42 218 224 399 1.84e-53 179
Msa0021690 AT4G04740.5 51.337 187 70 2 42 218 224 399 1.84e-53 179
Msa0021690 AT4G04740.3 51.337 187 70 2 42 218 224 399 1.84e-53 179
Msa0021690 AT4G04740.1 51.337 187 70 2 42 218 224 399 1.84e-53 179
Msa0021690 AT4G04740.7 51.337 187 70 2 42 218 224 399 1.84e-53 179
Msa0021690 AT4G04740.2 51.337 187 70 2 42 218 224 399 2.13e-53 179
Msa0021690 AT5G23580.1 50.000 184 70 3 42 214 177 349 4.49e-53 177
Msa0021690 AT4G21940.3 49.727 183 79 2 42 218 257 432 2.81e-52 176
Msa0021690 AT2G35890.2 47.594 187 76 3 42 217 287 462 3.15e-52 176
Msa0021690 AT2G35890.1 47.594 187 76 3 42 217 287 462 3.15e-52 176
Msa0021690 AT4G21940.1 49.727 183 79 2 42 218 257 432 7.75e-52 176
Msa0021690 AT4G21940.2 49.727 183 79 2 42 218 257 432 9.01e-52 176
Msa0021690 AT1G61950.1 49.198 187 73 3 42 217 254 429 3.55e-50 171
Msa0021690 AT5G66210.6 42.021 188 87 2 42 218 219 395 4.58e-43 150
Msa0021690 AT5G66210.4 42.021 188 87 2 42 218 219 395 4.58e-43 150
Msa0021690 AT5G66210.5 42.021 188 87 2 42 218 219 395 7.33e-43 150
Msa0021690 AT5G66210.3 42.021 188 87 2 42 218 219 395 1.05e-42 150
Msa0021690 AT5G66210.1 42.021 188 87 2 42 218 219 395 1.31e-42 150
Msa0021690 AT5G66210.2 42.021 188 87 2 42 218 219 395 1.31e-42 150
Msa0021690 AT4G04710.3 45.596 193 77 4 35 218 176 349 3.32e-42 149
Msa0021690 AT4G04710.2 45.596 193 77 4 35 218 190 363 4.25e-42 148
Msa0021690 AT2G17890.1 42.857 182 94 2 42 218 265 441 1.18e-41 149
Msa0021690 AT4G04710.1 44.000 200 83 4 35 218 190 376 4.70e-41 146
Msa0021690 AT4G04710.4 44.000 200 83 4 35 218 190 376 4.88e-41 146
Msa0021690 AT4G36070.1 39.362 188 92 2 42 218 228 404 7.97e-40 143
Msa0021690 AT4G36070.2 39.362 188 92 2 42 218 228 404 9.91e-40 143
Msa0021690 AT3G50530.1 40.000 185 90 3 43 217 308 481 1.36e-39 143
Msa0021690 AT3G50530.2 40.000 185 90 3 43 217 339 512 1.53e-39 143
Msa0021690 AT4G04700.1 41.176 187 89 2 42 218 187 362 3.46e-37 135
Msa0021690 AT1G49580.1 37.433 187 95 2 43 218 310 485 1.59e-36 135
Msa0021690 AT3G19100.1 38.251 183 98 3 43 218 304 478 5.08e-36 133
Msa0021690 AT4G04695.1 42.246 187 87 2 42 218 187 362 5.82e-36 132
Msa0021690 AT2G41140.1 39.665 179 99 3 43 217 283 456 7.15e-36 133
Msa0021690 AT3G56760.1 39.106 179 100 3 43 217 284 457 8.13e-36 132
Msa0021690 AT5G24430.1 35.838 173 91 2 43 206 303 464 6.17e-33 125
Msa0021690 AT3G49370.1 35.838 173 91 2 43 206 302 463 3.45e-32 122
Msa0021690 AT2G46700.2 54.255 94 43 0 43 136 122 215 1.28e-30 117
Msa0021690 AT2G46700.3 54.255 94 43 0 43 136 122 215 1.28e-30 117
Msa0021690 AT2G46700.1 54.255 94 43 0 43 136 303 396 5.61e-30 116
Msa0021690 AT1G12580.1 45.133 113 61 1 27 139 185 296 3.74e-27 108
Msa0021690 AT1G08650.2 42.574 101 57 1 42 141 169 269 2.29e-22 92.4
Msa0021690 AT1G12680.1 44.898 98 54 0 42 139 252 349 3.69e-22 94.0
Msa0021690 AT1G08650.1 42.424 99 56 1 42 139 169 267 3.91e-22 92.0
Msa0021690 AT3G04530.1 43.878 98 54 1 42 138 165 262 6.45e-21 88.6
Msa0021690 AT3G52890.2 34.507 142 84 6 5 140 732 870 5.01e-15 73.9
Msa0021690 AT3G52890.4 34.507 142 84 6 5 140 732 870 5.01e-15 73.9
Msa0021690 AT3G52890.1 34.507 142 84 6 5 140 732 870 5.01e-15 73.9
Msa0021690 AT3G52890.3 34.507 142 84 6 5 140 732 870 5.01e-15 73.9
Msa0021690 AT5G10930.1 43.820 89 44 3 49 135 173 257 1.97e-14 72.0
Msa0021690 AT1G30270.1 41.304 92 48 4 50 139 193 280 2.55e-14 71.6
Msa0021690 AT1G30270.2 41.304 92 48 4 50 139 193 280 2.85e-14 71.2
Msa0021690 AT1G30270.3 41.304 92 48 4 50 139 96 183 2.88e-14 71.2
Msa0021690 AT5G03640.2 31.447 159 88 6 2 143 718 872 4.77e-14 70.9
Msa0021690 AT5G03640.1 31.447 159 88 6 2 143 718 872 4.77e-14 70.9
Msa0021690 AT5G39440.1 40.404 99 54 2 42 139 170 264 5.62e-14 70.5
Msa0021690 AT1G48490.3 39.604 101 59 2 38 137 1001 1100 1.27e-13 69.7
Msa0021690 AT1G48490.2 39.604 101 59 2 38 137 1001 1100 1.27e-13 69.7
Msa0021690 AT1G48490.1 39.604 101 59 2 38 137 1001 1100 1.27e-13 69.7
Msa0021690 AT1G48490.4 39.604 101 59 2 38 137 1002 1101 1.27e-13 69.7
Msa0021690 AT1G79250.1 27.027 148 97 4 5 145 333 476 2.01e-13 68.9
Msa0021690 AT1G79250.3 27.027 148 97 4 5 145 333 476 2.01e-13 68.9
Msa0021690 AT1G79250.2 27.027 148 97 4 5 145 333 476 2.01e-13 68.9
Msa0021690 AT1G79250.4 27.027 148 97 4 5 145 333 476 2.01e-13 68.9
Msa0021690 AT5G40030.1 31.579 133 78 4 5 134 306 428 2.50e-13 68.6
Msa0021690 AT5G62310.1 42.553 94 44 3 48 136 943 1031 3.57e-13 68.6
Msa0021690 AT3G53930.1 37.500 96 51 3 48 138 179 270 6.61e-13 67.8
Msa0021690 AT3G53930.2 37.500 96 51 3 48 138 179 270 6.67e-13 67.4
Msa0021690 AT3G17850.1 39.362 94 47 3 49 137 1072 1160 9.85e-13 67.4
Msa0021690 AT2G26980.5 43.478 92 46 4 50 139 176 263 1.04e-12 66.6
Msa0021690 AT2G26980.4 43.478 92 46 4 50 139 186 273 1.07e-12 66.6
Msa0021690 AT2G26980.3 43.478 92 46 4 50 139 176 263 1.16e-12 66.6
Msa0021690 AT2G26980.1 43.478 92 46 4 50 139 176 263 1.29e-12 66.2
Msa0021690 AT3G29160.3 39.000 100 55 2 42 139 171 266 3.13e-12 65.1
Msa0021690 AT3G29160.1 39.000 100 55 2 42 139 171 266 3.39e-12 65.5
Msa0021690 AT3G29160.2 39.000 100 55 2 42 139 171 266 3.39e-12 65.5
Msa0021690 AT5G01810.1 36.957 92 52 3 50 139 173 260 4.95e-12 64.7
Msa0021690 AT5G01810.2 36.957 92 52 3 50 139 173 260 4.95e-12 64.7
Msa0021690 AT5G01810.3 35.052 97 57 3 45 139 168 260 5.24e-12 64.7
Msa0021690 AT3G01090.3 39.000 100 55 2 42 139 170 265 5.38e-12 64.7
Msa0021690 AT3G01090.1 39.000 100 55 2 42 139 170 265 5.38e-12 64.7
Msa0021690 AT3G01090.2 39.000 100 55 2 42 139 193 288 5.79e-12 64.7
Msa0021690 AT2G20050.2 35.922 103 59 3 38 137 925 1023 5.99e-12 64.7
Msa0021690 AT2G20050.1 35.922 103 59 3 38 137 928 1026 6.05e-12 64.7
Msa0021690 AT5G47750.1 33.582 134 79 5 5 134 385 512 1.29e-11 63.5
Msa0021690 AT3G25250.1 26.866 134 87 3 25 157 213 336 1.50e-11 63.5
Msa0021690 AT1G16440.1 27.928 111 77 2 36 145 324 432 3.75e-11 62.4
Msa0021690 AT1G01140.3 36.957 92 52 4 50 139 181 268 4.37e-11 62.0
Msa0021690 AT1G01140.1 36.957 92 52 4 50 139 181 268 5.06e-11 62.0

Find 64 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACATCTCCATCAGGAATT+TGG 0.196700 1_1:+39022403 None:intergenic
ATTCTTTACATCTTACTTTC+TGG 0.208402 1_1:-39023714 Msa0021690:CDS
GTGAGTATATTCCCATTATC+TGG 0.214914 1_1:-39022363 Msa0021690:three_prime_UTR
TCACATCTGCCATAAGTATT+TGG 0.270621 1_1:+39022382 None:intergenic
ACTTCAGGGGCCATGTAATA+TGG 0.287926 1_1:+39023786 None:intergenic
GCACTCCAGATATCAATTTC+AGG 0.289113 1_1:+39023744 None:intergenic
GTGCAGTAAGCCGGCGCTTT+GGG 0.289898 1_1:+39022963 None:intergenic
ACTGAATAGATCCCAGATAA+TGG 0.309160 1_1:+39022351 None:intergenic
CAAAATACTAGTGATATTAA+AGG 0.318977 1_1:-39024898 Msa0021690:CDS
TGTGCAGTAAGCCGGCGCTT+TGG 0.327314 1_1:+39022962 None:intergenic
GAAAATTGTGTGAGCCTTGC+TGG 0.331474 1_1:+39022746 None:intergenic
AAATCCTCCTAATGTTTCAT+TGG 0.363649 1_1:-39022784 Msa0021690:CDS
TTCTTTGCATTCTGCAACCA+TGG 0.369376 1_1:+39022805 None:intergenic
TTTCATTAGTTCTATTTAAC+CGG 0.375769 1_1:-39022257 Msa0021690:three_prime_UTR
GAAAGATTTAACGAGATAGT+TGG 0.378078 1_1:-39023813 Msa0021690:CDS
GATGGATGACTTTCTATTAC+CGG 0.383118 1_1:+39022238 None:intergenic
GTTTCTCCCAATGAAACATT+AGG 0.386917 1_1:+39022777 None:intergenic
CTGAATAGATCCCAGATAAT+GGG 0.406441 1_1:+39022352 None:intergenic
TAGAATAACAGAGGGATTCC+AGG 0.410833 1_1:-39022492 Msa0021690:CDS
TGGAGATGTCCAAATACTTA+TGG 0.411839 1_1:-39022391 Msa0021690:three_prime_UTR
GTAAGCCGGCGCTTTGGGTC+AGG 0.420975 1_1:+39022968 None:intergenic
ATGGCCCTGAAATTGATATC+TGG 0.424350 1_1:-39023749 Msa0021690:CDS
TTGTGTGAGCCTTGCTGGCT+CGG 0.430581 1_1:+39022751 None:intergenic
AATCCTCCTAATGTTTCATT+GGG 0.441297 1_1:-39022783 Msa0021690:CDS
TTCGCATTATCAGAAACCTT+TGG 0.449362 1_1:+39023016 None:intergenic
TGTTTATTGTTCCTACTGGA+TGG 0.453715 1_1:+39024969 None:intergenic
TTAAAATGCAGAAACTGAGC+AGG 0.461264 1_1:-39023092 Msa0021690:intron
TACTCATGTTGACAGTTAGT+TGG 0.462071 1_1:+39022289 None:intergenic
AAAGCGCCGGCTTACTGCAC+AGG 0.477508 1_1:-39022960 Msa0021690:CDS
GTGATGGATACAGAAAATAA+AGG 0.485231 1_1:-39022470 Msa0021690:CDS
CACTCCAGATATCAATTTCA+GGG 0.504258 1_1:+39023745 None:intergenic
TGTTCCACAGTCGATGGATG+TGG 0.506613 1_1:-39022327 Msa0021690:three_prime_UTR
TGCTTATATTCAAGACCGGA+TGG 0.513611 1_1:+39022220 None:intergenic
CAAAACCGAAAGGAAAAGCC+TGG 0.517808 1_1:-39024948 Msa0021690:CDS
GAAATTGATATCTGGAGTGC+TGG 0.520506 1_1:-39023741 Msa0021690:CDS
TTATTGCTTATATTCAAGAC+CGG 0.526275 1_1:+39022216 None:intergenic
TTATCAGAAACCTTTGGCCA+TGG 0.532002 1_1:+39023022 None:intergenic
TTGACTTTACAAGGGTTCCA+TGG 0.534211 1_1:-39023039 Msa0021690:CDS
AGAAGTTGTTAGAATAACAG+AGG 0.545528 1_1:-39022501 Msa0021690:CDS
GAAGTTGTTAGAATAACAGA+GGG 0.545888 1_1:-39022500 Msa0021690:CDS
AACAGAGGGATTCCAGGTGA+TGG 0.545986 1_1:-39022486 Msa0021690:CDS
TCAGTTTGTTCCACAGTCGA+TGG 0.546003 1_1:-39022333 Msa0021690:three_prime_UTR
AGTATTTGGACATCTCCATC+AGG 0.548086 1_1:+39022396 None:intergenic
TGAGTATATTCCCATTATCT+GGG 0.548769 1_1:-39022362 Msa0021690:three_prime_UTR
AACTAAATGCAGATCATCCA+TGG 0.555527 1_1:-39022822 Msa0021690:intron
TACAAGGGTTCCATGGCCAA+AGG 0.558449 1_1:-39023032 Msa0021690:CDS
ACATTGATGAACTACGAGTA+GGG 0.566646 1_1:-39022439 Msa0021690:CDS
CTAGGTCACCAAATTCCTGA+TGG 0.568596 1_1:-39022411 Msa0021690:exon
TCTCCCAATGAAACATTAGG+AGG 0.570722 1_1:+39022780 None:intergenic
ACACTTCCTGTGCAGTAAGC+CGG 0.574215 1_1:+39022954 None:intergenic
GTAATAGAAAGTCATCCATC+CGG 0.580366 1_1:-39022235 Msa0021690:three_prime_UTR
AGTTGGAAGTCCATATTACA+TGG 0.582119 1_1:-39023796 Msa0021690:CDS
ACTTAAGAAAACAGCACTGA+GGG 0.590032 1_1:-39022711 Msa0021690:intron
TTGATCCTGACCCAAAGCGC+CGG 0.592831 1_1:-39022973 Msa0021690:CDS
AACATTGATGAACTACGAGT+AGG 0.607687 1_1:-39022440 Msa0021690:CDS
ACTACGAGTAGGGTTAAGCT+AGG 0.621790 1_1:-39022429 Msa0021690:exon
ATTTCCACATCCATCGACTG+TGG 0.626550 1_1:+39022323 None:intergenic
GAACAATAAACAAAACCGAA+AGG 0.641324 1_1:-39024958 Msa0021690:CDS
GATCAAGCATCTTCTTAACA+AGG 0.646363 1_1:+39022990 None:intergenic
GCTGTGCAAATCCATCCAGT+AGG 0.655214 1_1:-39024980 Msa0021690:CDS
GTGATATTAAAGGAACCCAC+TGG 0.655871 1_1:-39024888 Msa0021690:intron
TAAAATGCAGAAACTGAGCA+GGG 0.661481 1_1:-39023091 Msa0021690:intron
AGAAACAGTCCGAGCCAGCA+AGG 0.667822 1_1:-39022760 Msa0021690:CDS
AACTTAAGAAAACAGCACTG+AGG 0.760635 1_1:-39022712 Msa0021690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTAAT+CGG - chr1_1:39024520-39024539 Msa0021690:intron 0.0%
!!! TGTTTTATAACTTAAAATCT+TGG - chr1_1:39022768-39022787 Msa0021690:CDS 15.0%
!! ATATATATCATGTTAACATT+TGG - chr1_1:39022939-39022958 Msa0021690:intron 15.0%
!!! AATTTCTTTTTAATACTTCA+GGG + chr1_1:39023398-39023417 None:intergenic 15.0%
!!! TAATTTCTTTTTAATACTTC+AGG + chr1_1:39023399-39023418 None:intergenic 15.0%
!!! GAAGTATTAAAAAGAAATTA+TGG - chr1_1:39023399-39023418 Msa0021690:intron 15.0%
!! AATATACAAATGTAAATACA+AGG + chr1_1:39023933-39023952 None:intergenic 15.0%
!! CAAAATACTAGTGATATTAA+AGG - chr1_1:39022269-39022288 Msa0021690:three_prime_UTR 20.0%
!! TTATAACTTAAAATCTTGGT+CGG - chr1_1:39022772-39022791 Msa0021690:CDS 20.0%
!!! ATATCACTTATCAAAGTTTT+TGG - chr1_1:39022867-39022886 Msa0021690:intron 20.0%
!!! TAAAGTTTACAATTTTGTGT+AGG - chr1_1:39023330-39023349 Msa0021690:intron 20.0%
!!! ATTTCTTTTTAATACTTCAG+GGG + chr1_1:39023397-39023416 None:intergenic 20.0%
!!! ATCTTTTATTGACTTTACAA+GGG - chr1_1:39024120-39024139 Msa0021690:intron 20.0%
!!! TTTCATTAGTTCTATTTAAC+CGG - chr1_1:39024910-39024929 Msa0021690:CDS 20.0%
!!! CATTTATCTTTTTCATTTTG+TGG + chr1_1:39024991-39025010 None:intergenic 20.0%
! AAAAATTTACGGAAGGAATT+AGG - chr1_1:39022360-39022379 Msa0021690:three_prime_UTR 25.0%
! AAAATTTACGGAAGGAATTA+GGG - chr1_1:39022361-39022380 Msa0021690:three_prime_UTR 25.0%
! GAAACAATATTTGCATGTTT+AGG + chr1_1:39022531-39022550 None:intergenic 25.0%
! TGCAAATATTGTTTCATTGA+AGG - chr1_1:39022536-39022555 Msa0021690:intron 25.0%
!! TGATGATGTTCATCTTATTA+TGG - chr1_1:39022575-39022594 Msa0021690:intron 25.0%
! AAAAAAGATGAGAAAAGAGA+GGG + chr1_1:39022709-39022728 None:intergenic 25.0%
! AAAAAAAGATGAGAAAAGAG+AGG + chr1_1:39022710-39022729 None:intergenic 25.0%
!! ACATTTGGAGTTAAAATGTT+AGG - chr1_1:39022954-39022973 Msa0021690:intron 25.0%
! ATATATCATAACCAACAGAA+GGG + chr1_1:39023055-39023074 None:intergenic 25.0%
! AATATATCATAACCAACAGA+AGG + chr1_1:39023056-39023075 None:intergenic 25.0%
!! TTCTGTTGGTTATGATATAT+TGG - chr1_1:39023055-39023074 Msa0021690:CDS 25.0%
!! TCTGTTGGTTATGATATATT+GGG - chr1_1:39023056-39023075 Msa0021690:CDS 25.0%
! AAACTTTAGTTAACTGTGTA+TGG + chr1_1:39023318-39023337 None:intergenic 25.0%
! ATTCTTTACATCTTACTTTC+TGG - chr1_1:39023453-39023472 Msa0021690:intron 25.0%
! CACTTTAACCTAAATTCTTA+AGG + chr1_1:39023643-39023662 None:intergenic 25.0%
!! AACTACTCTAAAAAAAGAGT+AGG + chr1_1:39023769-39023788 None:intergenic 25.0%
! TTACTATAACCTACTTGAAA+GGG - chr1_1:39023787-39023806 Msa0021690:CDS 25.0%
!!! GATCTTTTATTGACTTTACA+AGG - chr1_1:39024119-39024138 Msa0021690:intron 25.0%
! TAAAAAAGACCGAAATAGAA+GGG + chr1_1:39024585-39024604 None:intergenic 25.0%
! ATAAAAAAGACCGAAATAGA+AGG + chr1_1:39024586-39024605 None:intergenic 25.0%
! TTATTGCTTATATTCAAGAC+CGG + chr1_1:39024954-39024973 None:intergenic 25.0%
!!! GTTTTGTTTATTGTTCCTAC+TGG + chr1_1:39022205-39022224 None:intergenic 30.0%
GAACAATAAACAAAACCGAA+AGG - chr1_1:39022209-39022228 Msa0021690:three_prime_UTR 30.0%
GAGAATTCGGGAAAAATTTA+CGG - chr1_1:39022349-39022368 Msa0021690:three_prime_UTR 30.0%
CTATGCAAAGATAGAAATAC+TGG - chr1_1:39022408-39022427 Msa0021690:three_prime_UTR 30.0%
AGCGTGTAAATCAATTTCAA+AGG - chr1_1:39022440-39022459 Msa0021690:CDS 30.0%
TATTGAAGATGTTAGAAGAG+AGG - chr1_1:39022485-39022504 Msa0021690:CDS 30.0%
TCTTGGTCGGATATATAATA+TGG - chr1_1:39022785-39022804 Msa0021690:CDS 30.0%
!!! ACAAGGTATACTTTGTTTTC+TGG - chr1_1:39022977-39022996 Msa0021690:CDS 30.0%
! TCTTTGAAAGCAATTGACTT+TGG - chr1_1:39023186-39023205 Msa0021690:intron 30.0%
! CTGTCAATTTTCTTTAAACC+AGG - chr1_1:39023210-39023229 Msa0021690:intron 30.0%
ACTAGTAAATAGCATTTACC+TGG + chr1_1:39023231-39023250 None:intergenic 30.0%
! CTTGTTCTTCATCATCATTT+TGG - chr1_1:39023283-39023302 Msa0021690:intron 30.0%
TTTAGTTAACTGTGTATGGA+TGG + chr1_1:39023314-39023333 None:intergenic 30.0%
GAAAGATTTAACGAGATAGT+TGG - chr1_1:39023354-39023373 Msa0021690:intron 30.0%
TATCTTGCCAAAGCTATATT+TGG - chr1_1:39023505-39023524 Msa0021690:intron 30.0%
TCAAAAGCCAAATATAGCTT+TGG + chr1_1:39023515-39023534 None:intergenic 30.0%
! ATGAACCTTTTATAAGTGAG+AGG - chr1_1:39023601-39023620 Msa0021690:intron 30.0%
GTTACTATAACCTACTTGAA+AGG - chr1_1:39023786-39023805 Msa0021690:CDS 30.0%
TTACCATGATCTTTCTTATG+TGG - chr1_1:39023833-39023852 Msa0021690:intron 30.0%
!!! TATTTTGACAAATGTGCTTG+TGG - chr1_1:39023897-39023916 Msa0021690:intron 30.0%
TGATGTCATGAATATTGTGA+TGG + chr1_1:39024001-39024020 None:intergenic 30.0%
ACACAAAAAAGCTTGAAAAC+TGG - chr1_1:39024302-39024321 Msa0021690:intron 30.0%
CACAAAAAAGCTTGAAAACT+GGG - chr1_1:39024303-39024322 Msa0021690:intron 30.0%
AAATCCTCCTAATGTTTCAT+TGG - chr1_1:39024383-39024402 Msa0021690:intron 30.0%
AATCCTCCTAATGTTTCATT+GGG - chr1_1:39024384-39024403 Msa0021690:intron 30.0%
AGAAGTTGTTAGAATAACAG+AGG - chr1_1:39024666-39024685 Msa0021690:intron 30.0%
GAAGTTGTTAGAATAACAGA+GGG - chr1_1:39024667-39024686 Msa0021690:intron 30.0%
!! GTGATGGATACAGAAAATAA+AGG - chr1_1:39024697-39024716 Msa0021690:intron 30.0%
TGAGTATATTCCCATTATCT+GGG - chr1_1:39024805-39024824 Msa0021690:intron 30.0%
TGTTTATTGTTCCTACTGGA+TGG + chr1_1:39022201-39022220 None:intergenic 35.0%
! ATTTTCCAGGCTTTTCCTTT+CGG + chr1_1:39022227-39022246 None:intergenic 35.0%
! TTCACTTGCTCATATTTTCC+AGG + chr1_1:39022240-39022259 None:intergenic 35.0%
ATTGAGCTTAGATACGAGTT+AGG - chr1_1:39022309-39022328 Msa0021690:three_prime_UTR 35.0%
TTGAGCTTAGATACGAGTTA+GGG - chr1_1:39022310-39022329 Msa0021690:three_prime_UTR 35.0%
GAACTGTGTAGAAGAGAATT+CGG - chr1_1:39022336-39022355 Msa0021690:three_prime_UTR 35.0%
AACTGTGTAGAAGAGAATTC+GGG - chr1_1:39022337-39022356 Msa0021690:three_prime_UTR 35.0%
ATTCGGGAAAAATTTACGGA+AGG - chr1_1:39022353-39022372 Msa0021690:three_prime_UTR 35.0%
TTCATTGAAGGAGACATATG+AGG - chr1_1:39022548-39022567 Msa0021690:intron 35.0%
CTTATTATGGAACACTGTGA+AGG - chr1_1:39022588-39022607 Msa0021690:intron 35.0%
GGAGTTAAAATGTTAGGACA+AGG - chr1_1:39022960-39022979 Msa0021690:CDS 35.0%
! GTGTAAATTTTCCCTTCTGT+TGG - chr1_1:39023041-39023060 Msa0021690:CDS 35.0%
! TTTTAGATGTGCCACAAACA+TGG - chr1_1:39023102-39023121 Msa0021690:intron 35.0%
TCTGCAAACAAAAAGTTCTC+GGG + chr1_1:39023150-39023169 None:intergenic 35.0%
GTCTGCAAACAAAAAGTTCT+CGG + chr1_1:39023151-39023170 None:intergenic 35.0%
!! CTTTTTGTTTGCAGACAAGA+AGG - chr1_1:39023155-39023174 Msa0021690:intron 35.0%
AGTTGGAAGTCCATATTACA+TGG - chr1_1:39023371-39023390 Msa0021690:intron 35.0%
CACTCCAGATATCAATTTCA+GGG + chr1_1:39023425-39023444 None:intergenic 35.0%
!! TTTCTGGTGTCAATCCTTTT+TGG - chr1_1:39023469-39023488 Msa0021690:intron 35.0%
!! TTCTGGTGTCAATCCTTTTT+GGG - chr1_1:39023470-39023489 Msa0021690:intron 35.0%
!!! GCTATATTTGGCTTTTGAGT+CGG - chr1_1:39023517-39023536 Msa0021690:intron 35.0%
! TGTATCCTAGATGTGGATTT+TGG + chr1_1:39023560-39023579 None:intergenic 35.0%
! AAAATCCACATCTAGGATAC+AGG - chr1_1:39023559-39023578 Msa0021690:intron 35.0%
! TCTTAAGGCGTTAGGTTTAT+GGG + chr1_1:39023628-39023647 None:intergenic 35.0%
! TTCTTAAGGCGTTAGGTTTA+TGG + chr1_1:39023629-39023648 None:intergenic 35.0%
ACCTAACGCCTTAAGAATTT+AGG - chr1_1:39023632-39023651 Msa0021690:intron 35.0%
! ACCTAAATTCTTAAGGCGTT+AGG + chr1_1:39023636-39023655 None:intergenic 35.0%
AGAAACCATACAAGTGAGTT+GGG + chr1_1:39023671-39023690 None:intergenic 35.0%
AAAATATGTGCGCCTCTATT+AGG + chr1_1:39023734-39023753 None:intergenic 35.0%
! ATTACAACACCCTTTCAAGT+AGG + chr1_1:39023799-39023818 None:intergenic 35.0%
CATCCACATAAGAAAGATCA+TGG + chr1_1:39023839-39023858 None:intergenic 35.0%
CTTTCTTATGTGGATGAAGA+TGG - chr1_1:39023843-39023862 Msa0021690:intron 35.0%
!! AGATGGTATTTTTGTGCTTG+TGG - chr1_1:39023860-39023879 Msa0021690:intron 35.0%
TTAAAATGCAGAAACTGAGC+AGG - chr1_1:39024075-39024094 Msa0021690:intron 35.0%
TAAAATGCAGAAACTGAGCA+GGG - chr1_1:39024076-39024095 Msa0021690:intron 35.0%
TTCGCATTATCAGAAACCTT+TGG + chr1_1:39024154-39024173 None:intergenic 35.0%
GATCAAGCATCTTCTTAACA+AGG + chr1_1:39024180-39024199 None:intergenic 35.0%
AACTAAATGCAGATCATCCA+TGG - chr1_1:39024345-39024364 Msa0021690:intron 35.0%
GTTTCTCCCAATGAAACATT+AGG + chr1_1:39024393-39024412 None:intergenic 35.0%
AACTTAAGAAAACAGCACTG+AGG - chr1_1:39024455-39024474 Msa0021690:intron 35.0%
! ACTTAAGAAAACAGCACTGA+GGG - chr1_1:39024456-39024475 Msa0021690:intron 35.0%
CATTTACGACCCTTCTATTT+CGG - chr1_1:39024573-39024592 Msa0021690:intron 35.0%
TATTGGACTTTAATGTGAGC+AGG - chr1_1:39024618-39024637 Msa0021690:intron 35.0%
! TATTTTCTGTATCCATCACC+TGG + chr1_1:39024696-39024715 None:intergenic 35.0%
AACATTGATGAACTACGAGT+AGG - chr1_1:39024727-39024746 Msa0021690:intron 35.0%
ACATTGATGAACTACGAGTA+GGG - chr1_1:39024728-39024747 Msa0021690:intron 35.0%
TGGAGATGTCCAAATACTTA+TGG - chr1_1:39024776-39024795 Msa0021690:intron 35.0%
TCACATCTGCCATAAGTATT+TGG + chr1_1:39024788-39024807 None:intergenic 35.0%
GTGAGTATATTCCCATTATC+TGG - chr1_1:39024804-39024823 Msa0021690:intron 35.0%
CTGAATAGATCCCAGATAAT+GGG + chr1_1:39024818-39024837 None:intergenic 35.0%
ACTGAATAGATCCCAGATAA+TGG + chr1_1:39024819-39024838 None:intergenic 35.0%
TACTCATGTTGACAGTTAGT+TGG + chr1_1:39024881-39024900 None:intergenic 35.0%
GATGGATGACTTTCTATTAC+CGG + chr1_1:39024932-39024951 None:intergenic 35.0%
GTAATAGAAAGTCATCCATC+CGG - chr1_1:39024932-39024951 Msa0021690:CDS 35.0%
GTGATATTAAAGGAACCCAC+TGG - chr1_1:39022279-39022298 Msa0021690:three_prime_UTR 40.0%
GAATTAGGGAGAGGAGAATT+TGG - chr1_1:39022375-39022394 Msa0021690:three_prime_UTR 40.0%
GAAGAGAGGTTGAGATTATG+AGG - chr1_1:39022499-39022518 Msa0021690:CDS 40.0%
! GATGGATTTAACCACACTTG+CGG + chr1_1:39022667-39022686 None:intergenic 40.0%
ATCCATCGTCCAAATTGTTC+AGG - chr1_1:39022680-39022699 Msa0021690:intron 40.0%
! TTGGTAAAAGAGCTGCTTTG+AGG - chr1_1:39022886-39022905 Msa0021690:intron 40.0%
!!! GGTATACTTTGTTTTCTGGC+TGG - chr1_1:39022981-39023000 Msa0021690:CDS 40.0%
ACAAACATGGTGTGATGCAT+CGG - chr1_1:39023115-39023134 Msa0021690:intron 40.0%
ATGGCCCTGAAATTGATATC+TGG - chr1_1:39023418-39023437 Msa0021690:intron 40.0%
GCACTCCAGATATCAATTTC+AGG + chr1_1:39023426-39023445 None:intergenic 40.0%
! GAAATTGATATCTGGAGTGC+TGG - chr1_1:39023426-39023445 Msa0021690:intron 40.0%
AAAAACCAACCTGCCCAAAA+AGG + chr1_1:39023486-39023505 None:intergenic 40.0%
ACCAACCAAAATCCACATCT+AGG - chr1_1:39023552-39023571 Msa0021690:intron 40.0%
!! TCCTAGATGTGGATTTTGGT+TGG + chr1_1:39023556-39023575 None:intergenic 40.0%
CATAACCTGTATCCTAGATG+TGG + chr1_1:39023567-39023586 None:intergenic 40.0%
AGGATACAGGTTATGTAGCA+AGG - chr1_1:39023572-39023591 Msa0021690:intron 40.0%
GGATACAGGTTATGTAGCAA+GGG - chr1_1:39023573-39023592 Msa0021690:intron 40.0%
TGGGTCCTCTCACTTATAAA+AGG + chr1_1:39023609-39023628 None:intergenic 40.0%
GAGAAACCATACAAGTGAGT+TGG + chr1_1:39023672-39023691 None:intergenic 40.0%
TTGACTTTACAAGGGTTCCA+TGG - chr1_1:39024128-39024147 Msa0021690:intron 40.0%
TTATCAGAAACCTTTGGCCA+TGG + chr1_1:39024148-39024167 None:intergenic 40.0%
TTCTTTGCATTCTGCAACCA+TGG + chr1_1:39024365-39024384 None:intergenic 40.0%
TCTCCCAATGAAACATTAGG+AGG + chr1_1:39024390-39024409 None:intergenic 40.0%
CGAAATAGAAGGGTCGTAAA+TGG + chr1_1:39024575-39024594 None:intergenic 40.0%
TAGAATAACAGAGGGATTCC+AGG - chr1_1:39024675-39024694 Msa0021690:intron 40.0%
AGTATTTGGACATCTCCATC+AGG + chr1_1:39024774-39024793 None:intergenic 40.0%
TGCTTATATTCAAGACCGGA+TGG + chr1_1:39024950-39024969 None:intergenic 40.0%
CAAAACCGAAAGGAAAAGCC+TGG - chr1_1:39022219-39022238 Msa0021690:three_prime_UTR 45.0%
AGCTTAGATACGAGTTAGGG+AGG - chr1_1:39022313-39022332 Msa0021690:three_prime_UTR 45.0%
GCTTAGATACGAGTTAGGGA+GGG - chr1_1:39022314-39022333 Msa0021690:three_prime_UTR 45.0%
TTACGGAAGGAATTAGGGAG+AGG - chr1_1:39022366-39022385 Msa0021690:three_prime_UTR 45.0%
GTTGATCGTATTGTCGCTAG+AGG - chr1_1:39022621-39022640 Msa0021690:intron 45.0%
GACCTGAACAATTTGGACGA+TGG + chr1_1:39022685-39022704 None:intergenic 45.0%
AGAGGGAGACCTGAACAATT+TGG + chr1_1:39022692-39022711 None:intergenic 45.0%
GATGCATCACACCATGTTTG+TGG + chr1_1:39023116-39023135 None:intergenic 45.0%
CAAACATGGTGTGATGCATC+GGG - chr1_1:39023116-39023135 Msa0021690:intron 45.0%
GTTAACTGTGTATGGATGGC+AGG + chr1_1:39023310-39023329 None:intergenic 45.0%
ACTTCAGGGGCCATGTAATA+TGG + chr1_1:39023384-39023403 None:intergenic 45.0%
!! TCAATCCTTTTTGGGCAGGT+TGG - chr1_1:39023478-39023497 Msa0021690:intron 45.0%
TGATGCCCAACTCACTTGTA+TGG - chr1_1:39023663-39023682 Msa0021690:intron 45.0%
!! CTTACTGCACAGGAAGTGTT+AGG - chr1_1:39024217-39024236 Msa0021690:intron 45.0%
GAAAATTGTGTGAGCCTTGC+TGG + chr1_1:39024424-39024443 None:intergenic 45.0%
ACTACGAGTAGGGTTAAGCT+AGG - chr1_1:39024738-39024757 Msa0021690:intron 45.0%
CTAGGTCACCAAATTCCTGA+TGG - chr1_1:39024756-39024775 Msa0021690:intron 45.0%
GGACATCTCCATCAGGAATT+TGG + chr1_1:39024767-39024786 None:intergenic 45.0%
! TCAGTTTGTTCCACAGTCGA+TGG - chr1_1:39024834-39024853 Msa0021690:intron 45.0%
! ATTTCCACATCCATCGACTG+TGG + chr1_1:39024847-39024866 None:intergenic 45.0%
!!! TTTATTTTATTTTTCTATAT+TGG - chr1_1:39024601-39024620 Msa0021690:intron 5.0%
GCTGTGCAAATCCATCCAGT+AGG - chr1_1:39022187-39022206 Msa0021690:three_prime_UTR 50.0%
AGCTCAATCTCTCGACCAGT+GGG + chr1_1:39022297-39022316 None:intergenic 50.0%
AAGCTCAATCTCTCGACCAG+TGG + chr1_1:39022298-39022317 None:intergenic 50.0%
!! GGTGTCAATCCTTTTTGGGC+AGG - chr1_1:39023474-39023493 Msa0021690:intron 50.0%
CAGGTTATGTAGCAAGGGTG+AGG - chr1_1:39023578-39023597 Msa0021690:intron 50.0%
TGGTTTCTCTGAGCCCAATG+TGG - chr1_1:39023683-39023702 Msa0021690:intron 50.0%
CTCTCCTCGTGACCTAATAG+AGG - chr1_1:39023719-39023738 Msa0021690:CDS 50.0%
TACAAGGGTTCCATGGCCAA+AGG - chr1_1:39024135-39024154 Msa0021690:intron 50.0%
ACACTTCCTGTGCAGTAAGC+CGG + chr1_1:39024216-39024235 None:intergenic 50.0%
AACAGAGGGATTCCAGGTGA+TGG - chr1_1:39024681-39024700 Msa0021690:intron 50.0%
TGTTCCACAGTCGATGGATG+TGG - chr1_1:39024840-39024859 Msa0021690:intron 50.0%
CTCAGGGGATCGTCCACATT+GGG + chr1_1:39023699-39023718 None:intergenic 55.0%
TAGGTCACGAGGAGAGCTCA+GGG + chr1_1:39023715-39023734 None:intergenic 55.0%
TTAGGTCACGAGGAGAGCTC+AGG + chr1_1:39023716-39023735 None:intergenic 55.0%
TGCGCCTCTATTAGGTCACG+AGG + chr1_1:39023726-39023745 None:intergenic 55.0%
TTGATCCTGACCCAAAGCGC+CGG - chr1_1:39024194-39024213 Msa0021690:intron 55.0%
AGAAACAGTCCGAGCCAGCA+AGG - chr1_1:39024407-39024426 Msa0021690:intron 55.0%
! TTGTGTGAGCCTTGCTGGCT+CGG + chr1_1:39024419-39024438 None:intergenic 55.0%
CACACTTGCGGCTGCGTGTT+CGG + chr1_1:39022655-39022674 None:intergenic 60.0%
GCTCAGGGGATCGTCCACAT+TGG + chr1_1:39023700-39023719 None:intergenic 60.0%
AGGTCACGAGGAGAGCTCAG+GGG + chr1_1:39023714-39023733 None:intergenic 60.0%
GTGCAGTAAGCCGGCGCTTT+GGG + chr1_1:39024207-39024226 None:intergenic 60.0%
TGTGCAGTAAGCCGGCGCTT+TGG + chr1_1:39024208-39024227 None:intergenic 60.0%
!! AAAGCGCCGGCTTACTGCAC+AGG - chr1_1:39024207-39024226 Msa0021690:intron 60.0%
CGAACACGCAGCCGCAAGTG+TGG - chr1_1:39022653-39022672 Msa0021690:intron 65.0%
! GTAAGCCGGCGCTTTGGGTC+AGG + chr1_1:39024202-39024221 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 39022177 39025012 39022177 ID=Msa0021690;Name=Msa0021690
chr1_1 mRNA 39022177 39025012 39022177 ID=Msa0021690-mRNA-1;Parent=Msa0021690;Name=Msa0021690-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0.25|0.2|1|0.75|0.8|5|253|218
chr1_1 exon 39022177 39022549 39022177 ID=Msa0021690-mRNA-1:exon:12038;Parent=Msa0021690-mRNA-1
chr1_1 exon 39022712 39022832 39022712 ID=Msa0021690-mRNA-1:exon:12037;Parent=Msa0021690-mRNA-1
chr1_1 exon 39022956 39023103 39022956 ID=Msa0021690-mRNA-1:exon:12036;Parent=Msa0021690-mRNA-1
chr1_1 exon 39023694 39023837 39023694 ID=Msa0021690-mRNA-1:exon:12035;Parent=Msa0021690-mRNA-1
chr1_1 exon 39024889 39025012 39024889 ID=Msa0021690-mRNA-1:exon:12034;Parent=Msa0021690-mRNA-1
chr1_1 CDS 39024889 39025012 39024889 ID=Msa0021690-mRNA-1:cds;Parent=Msa0021690-mRNA-1
chr1_1 CDS 39023694 39023837 39023694 ID=Msa0021690-mRNA-1:cds;Parent=Msa0021690-mRNA-1
chr1_1 CDS 39022956 39023103 39022956 ID=Msa0021690-mRNA-1:cds;Parent=Msa0021690-mRNA-1
chr1_1 CDS 39022712 39022832 39022712 ID=Msa0021690-mRNA-1:cds;Parent=Msa0021690-mRNA-1
chr1_1 CDS 39022430 39022549 39022430 ID=Msa0021690-mRNA-1:cds;Parent=Msa0021690-mRNA-1
chr1_1 three_prime_UTR 39022177 39022429 39022177 ID=Msa0021690-mRNA-1:three_prime_utr;Parent=Msa0021690-mRNA-1
Gene Sequence

>Msa0021690

ATGGGAAATTGCTGTGCAAATCCATCCAGTAGGAACAATAAACAAAACCGAAAGGAAAAGCCTGGAAAATATGAGCAAGTGAAAATAAACAACAAAATACTAGTGATATTAAAGGAACCCACTGGTGAAAGATTTAACGAGATAGTTGGAAGTCCATATTACATGGCCCCTGAAGTATTAAAAAGAAATTATGGCCCTGAAATTGATATCTGGAGTGCTGGAGTTATTCTTTACATCTTACTTTCTGGTGTCAATCCTTTTTGGGCAGAAACTGAGCAGGGAGTTGCTCAAGCAATTTTAAGATCTTTTATTGACTTTACAAGGGTTCCATGGCCAAAGGTTTCTGATAATGCGAAAGACCTTGTTAAGAAGATGCTTGATCCTGACCCAAAGCGCCGGCTTACTGCACAGGAAGTATCATCCATGGTTGCAGAATGCAAAGAAATCCTCCTAATGTTTCATTGGGAGAAACAGTCCGAGCCAGCAAGGCTCACACAATTTTCTGTAATGAACAAACTTAAGAAAACAGCACTGAGGGTGATTGCAGAGCATTTATCTGTAGAAGAAGTTGTTAGAATAACAGAGGGATTCCAGGTGATGGATACAGAAAATAAAGGAAAAATCAACATTGATGAACTACGAGTAGGGTTAAGCTAG
Protein sequence

>Msa0021690

MGNCCANPSSRNNKQNRKEKPGKYEQVKINNKILVILKEPTGERFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLSGVNPFWAETEQGVAQAILRSFIDFTRVPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVSSMVAECKEILLMFHWEKQSEPARLTQFSVMNKLKKTALRVIAEHLSVEEVVRITEGFQVMDTENKGKINIDELRVGLS*