AlfalfaGEDB | Msa0021700

M. sativa cultivar zhongmu-4 / Msa0021700

KEGG: K13412
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004697 GO:0004698 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0021700	sp\|Q42438\|CDPK8_ARATH	74.532	534	126	3	1	526	1	532	0.0	840

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0021700	MtrunA17_Chr1g0173541	97.727	528	12	0	1	528	1	528	1071
Msa0021700	MtrunA17_Chr7g0257751	79.887	532	101	1	1	526	1	532	898
Msa0021700	MtrunA17_Chr4g0059951	67.767	515	164	2	13	526	34	547	741
Msa0021700	MtrunA17_Chr7g0242561	65.356	534	173	2	1	526	1	530	728
Msa0021700	MtrunA17_Chr4g0033371	61.157	484	187	1	37	520	57	539	647
Msa0021700	MtrunA17_Chr1g0173531	95.238	294	13	1	532	824	1	294	566
Msa0021700	MtrunA17_Chr5g0441691	51.946	514	222	5	1	494	1	509	549
Msa0021700	MtrunA17_Chr1g0170281	56.209	459	192	4	39	494	106	558	541
Msa0021700	MtrunA17_Chr0c02g0489761	55.297	472	207	3	39	510	66	533	540
Msa0021700	MtrunA17_Chr5g0444171	54.684	459	206	2	35	493	76	532	537

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0021700	AT5G19450.2	74.532	534	126	3	1	526	1	532	840
Msa0021700	AT5G19450.1	74.532	534	126	3	1	526	1	532	840
Msa0021700	AT3G57530.1	72.913	539	134	3	1	528	1	538	834
Msa0021700	AT5G12480.1	73.221	534	135	3	1	526	1	534	833
Msa0021700	AT2G41860.2	73.962	530	136	2	1	528	1	530	822
Msa0021700	AT2G41860.1	73.774	530	137	2	1	528	1	530	820
Msa0021700	AT1G74740.1	65.602	532	176	3	1	525	1	532	724
Msa0021700	AT3G51850.1	65.530	528	180	1	1	526	1	528	719
Msa0021700	AT1G18890.1	70.355	479	142	0	47	525	58	536	713
Msa0021700	AT2G31500.1	58.692	535	204	3	1	518	1	535	661

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Find 271 sgRNAs with CRISPR-Local

Find 581 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGGATTCCAGGTGA+TGG	0.554656	1_1:-39033165	Msa0021700:CDS
AAAAGGGATGAATTAAGGGA+GGG	0.591946	1_1:+39036537	None:intergenic
AAAAGGTAGATGGAGTGGGT+TGG	0.561318	1_1:+39029298	None:intergenic
AAAATTGGAATGCTCTTTGG+AGG	0.485336	1_1:+39032641	None:intergenic
AAAGAAAGAATGTGAAAGGA+AGG	0.444218	1_1:+39036575	None:intergenic
AAAGAATGTGAAAGGAAGGA+AGG	0.479635	1_1:+39036579	None:intergenic
AAAGATGGTTTCCTAGATTA+TGG	0.229408	1_1:-39032715	Msa0021700:CDS
AAAGCGCCGGCTTACTGCAC+AGG	0.477508	1_1:-39033599	Msa0021700:CDS
AACATTGACGAACTACGAGT+AGG	0.640151	1_1:-39033119	Msa0021700:CDS
AACCAACCTGCCCAAAAGGG+AGG	0.624727	1_1:+39034126	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAGAATGTGAAAGGA+AGG	+	chr1_1:39028697-39028716	None:intergenic	30.0%
AGAGAAAGAAAGAATGTGAA+AGG	+	chr1_1:39028701-39028720	None:intergenic	30.0%
CAACAAAATCAAAAACACCT+TGG	-	chr1_1:39028904-39028923	Msa0021700:CDS	30.0%
CGTATTGTTGTAATATCTCT+CGG	+	chr1_1:39028952-39028971	None:intergenic	30.0%
TATTGAAGATGTTAGAAGAG+AGG	-	chr1_1:39029093-39029112	Msa0021700:CDS	30.0%
TCCTAATATTGTTACGTTGA+AGG	-	chr1_1:39029144-39029163	Msa0021700:CDS	30.0%
TCCTTCAACGTAACAATATT+AGG	+	chr1_1:39029148-39029167	None:intergenic	30.0%
TTCATCCAAGAATTGAATTC+GGG	-	chr1_1:39029423-39029442	Msa0021700:CDS	30.0%
GAGAGACAATACATATAAGA+AGG	-	chr1_1:39029683-39029702	Msa0021700:intron	30.0%
GAATGAACTTGTAACAGTAA+TGG	-	chr1_1:39030082-39030101	Msa0021700:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	39028588	39036703	39028588	ID=Msa0021700;Name=Msa0021700
chr1_1	mRNA	39028588	39036703	39028588	ID=Msa0021700-mRNA-1;Parent=Msa0021700;Name=Msa0021700-mRNA-1;_AED=0.28;_eAED=0.28;_QI=227\|0.87\|0.77\|1\|0.87\|0.77\|9\|0\|824
chr1_1	exon	39028588	39029476	39028588	ID=Msa0021700-mRNA-1:exon:12033;Parent=Msa0021700-mRNA-1
chr1_1	exon	39032106	39032257	39032106	ID=Msa0021700-mRNA-1:exon:12032;Parent=Msa0021700-mRNA-1
chr1_1	exon	39032519	39032749	39032519	ID=Msa0021700-mRNA-1:exon:12031;Parent=Msa0021700-mRNA-1
chr1_1	exon	39033061	39033228	39033061	ID=Msa0021700-mRNA-1:exon:12030;Parent=Msa0021700-mRNA-1
chr1_1	exon	39033349	39033464	39033349	ID=Msa0021700-mRNA-1:exon:12029;Parent=Msa0021700-mRNA-1
chr1_1	exon	39033590	39033742	39033590	ID=Msa0021700-mRNA-1:exon:12028;Parent=Msa0021700-mRNA-1
chr1_1	exon	39034133	39034276	39034133	ID=Msa0021700-mRNA-1:exon:12027;Parent=Msa0021700-mRNA-1
chr1_1	exon	39034367	39034490	39034367	ID=Msa0021700-mRNA-1:exon:12026;Parent=Msa0021700-mRNA-1
chr1_1	exon	39035982	39036703	39035982	ID=Msa0021700-mRNA-1:exon:12025;Parent=Msa0021700-mRNA-1
chr1_1	five_prime_UTR	39036477	39036703	39036477	ID=Msa0021700-mRNA-1:five_prime_utr;Parent=Msa0021700-mRNA-1
chr1_1	CDS	39035982	39036476	39035982	ID=Msa0021700-mRNA-1:cds;Parent=Msa0021700-mRNA-1
chr1_1	CDS	39034367	39034490	39034367	ID=Msa0021700-mRNA-1:cds;Parent=Msa0021700-mRNA-1
chr1_1	CDS	39034133	39034276	39034133	ID=Msa0021700-mRNA-1:cds;Parent=Msa0021700-mRNA-1
chr1_1	CDS	39033590	39033742	39033590	ID=Msa0021700-mRNA-1:cds;Parent=Msa0021700-mRNA-1
chr1_1	CDS	39033349	39033464	39033349	ID=Msa0021700-mRNA-1:cds;Parent=Msa0021700-mRNA-1
chr1_1	CDS	39033061	39033228	39033061	ID=Msa0021700-mRNA-1:cds;Parent=Msa0021700-mRNA-1
chr1_1	CDS	39032519	39032749	39032519	ID=Msa0021700-mRNA-1:cds;Parent=Msa0021700-mRNA-1
chr1_1	CDS	39032106	39032257	39032106	ID=Msa0021700-mRNA-1:cds;Parent=Msa0021700-mRNA-1
chr1_1	CDS	39028588	39029476	39028588	ID=Msa0021700-mRNA-1:cds;Parent=Msa0021700-mRNA-1

Gene Sequence

>Msa0021700

ATGGGAAATTGCTGTACAAATCCAATTAGTAAACTAAAACGAAAGGAAAAGCCCAAGAAAGACCAAGCGCCAACAAAGAACAACAAAAACAACAAAATCAAAAACACCTTGGTGGTGTTGAAAAAGCCCACGGGCCGAGAGATATTACAACAATACGAATTAGGGAGAGAATTAGGGAGAGGAGAATTTGGAATAACATATCTATGTAAAGATAGAAATACTGGTGAAGAATTAGCGTGTAAATCGATTTCAAAGGATAAGCTAAGAACAGCGATTGATATTGAAGATGTTAGAAGAGAGGTTGAAATTATGAGACATTTACCTAAACATCCTAATATTGTTACGTTGAAGGATACTTATGAAGATGATGATAATGTTCATCTTGTTATGGAGCTTTGTGAAGGTGGTGAGCTTTTTGATCGGATTGTTGCTAAGGGACATTATACAGAACGCGCCGCCGCGACGGTGGTTAAGACAATTGTTCAAGTTGTTCAGATGTGCCACGAACATGGTGTGATCCATCGAGATCTCAAACCCGAGAACTTTTTGTTTGCAAACAAGAAGGAAACATCACCTTTGAAAGCTATTGACTTTGGTTTGTCAATTACCTTTAAACCAGGTGATAAATTTAACGAGATAGTTGGGAGTCCATATTACATGGCCCCTGAAGTATTAAAGAGAAATTATGGCCCTGAAATAGATATCTGGAGTGCCGGAGTAATCCTTTACATCCTACTTTGCGGTATCCCTCCCTTTTGGGCAGAAACTGAGCAGGGAATTGCTCAAGCAATTATACGATCTGTTATTGACTTTAAAAAGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTATTAAGAAGATGCTTGATCCTGACCCAAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGCAGAATGCAAAGACAGCTCCTAATGTTTCATTGGGAGAAACAGTCAGAGCAAGGCTCATGCAATTTTCTGTAATGAACAAACTTAAGAAAACAGCATTGAGGGTTATTGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATAAAAGAGGGATTCCAGGTGATGGATACAGAAAATAAAGGCAAAATCAACATTGACGAACTACGAGTAGGGCTGCTTAAGCTTGGCCACCAAATTCCTGATGGAGATGTCCAAATACTGATGGAAGCTGGTGATGTTGACAAAGATGGTTTCCTAGATTATGGAGAGTTTGTAGCCATTTCTATTCATCTGAGAAAGATATCCCATGATGAACACCTCCAAAGAGCATTCCAATTTTTTGATAAAAATGAATCTGGGTTTATTGAACTTGAGGAGTTACGTAATGCCTTAGCTGATGAGGTTGACACGAACAGTGAAGAAGTCATTAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAAAATAAGTTATGAGGAATTTGCTACGATGATGAAGGCTGGTACAGATTGGAGAAAAGCATCAAGGCAGTATTCGAGAGAGAGGTTTACCAGTCTCAGTATTAAACTGATGAAGGAGGGATCATTAGAATTGAACAATGAGGGTAGGCGGTGGAAAATGGCGCTAACCACCATGTTAAACGGCGGCAACACGATACAGAATCCCAGCGTAGCATTCACGACGCCACAAAACTACGCATCAAGACTATCTCATCTCCTTACCGTAAACGCATTCAAACCCCTTTGGTGTCCCACTCTCACAATCCAACCCACTCCATCTACCTTTTCACCTTATCTCTCTCCTCACTCTCTAGACCCCTTCTCCGCCATTGCTTTCACCTCCCGCACCGCAATCCAATCCTTCCACCAAGCCATATCATCTCTCTCTCATCCTCCGCTCTCCCCAGACGGCCCCACTTTCACCGTGGCTGCTCTCGGCAAAGACTCTGAGCTTCTCCGTGAAGAATTTCTCTCTAGAATCTGTCCCGGTTCTGACCGGGTTAAGGTTCTGGTGCCACCGGTGGCTACTCCGAGTAGCTTAGCGACGGAGCTTGGGGATGGCGGTGGAAGGAGGGTAATGTGTCCGGTCCCGCTTGTTGTTGGCCTGGAGGAGCCACCTGTAGTTCCTAGTTTCCTGCATGAGCTTCGTGATGGAGGGTGGGTCCCGTTTAGAGTGGAGGCGTATGAGACGCGGTGGAGTGGGCCGCGGTGTGCGGAGGGGATTGTGAAGGCGGTTGAGGAGAAAGGATTGGATGCTGTAGTGTTTACAAGTAGTGCTGAAGTGGAGGGGCTGCTTAAAAGCTTGAATGTATTTGGGATGGGCTTTGGTGACTTGAGGAGGAAGTGTCCCGGGTTGGTTGTGGCGGCTCATGGGCCTGTCACGGCTGCTGGGGCGGAGAGACTGGGAGTAGAGGTTGATGTGGTGAGTTCTAAGTTTCATAGTTTTGATGGTATTATTGATGTTCTTAATGTAAAATTGGTACCAAGATTTAGAATT

Protein sequence

>Msa0021700

MGNCCTNPISKLKRKEKPKKDQAPTKNNKNNKIKNTLVVLKKPTGREILQQYELGRELGRGEFGITYLCKDRNTGEELACKSISKDKLRTAIDIEDVRREVEIMRHLPKHPNIVTLKDTYEDDDNVHLVMELCEGGELFDRIVAKGHYTERAAATVVKTIVQVVQMCHEHGVIHRDLKPENFLFANKKETSPLKAIDFGLSITFKPGDKFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGIPPFWAETEQGIAQAIIRSVIDFKKEPWPKVSDNAKDLIKKMLDPDPKRRLTAQEVLDHPWLQNAKTAPNVSLGETVRARLMQFSVMNKLKKTALRVIADHLSVEEVAGIKEGFQVMDTENKGKINIDELRVGLLKLGHQIPDGDVQILMEAGDVDKDGFLDYGEFVAISIHLRKISHDEHLQRAFQFFDKNESGFIELEELRNALADEVDTNSEEVINAIMHDVDTDKDGKISYEEFATMMKAGTDWRKASRQYSRERFTSLSIKLMKEGSLELNNEGRRWKMALTTMLNGGNTIQNPSVAFTTPQNYASRLSHLLTVNAFKPLWCPTLTIQPTPSTFSPYLSPHSLDPFSAIAFTSRTAIQSFHQAISSLSHPPLSPDGPTFTVAALGKDSELLREEFLSRICPGSDRVKVLVPPVATPSSLATELGDGGGRRVMCPVPLVVGLEEPPVVPSFLHELRDGGWVPFRVEAYETRWSGPRCAEGIVKAVEEKGLDAVVFTSSAEVEGLLKSLNVFGMGFGDLRRKCPGLVVAAHGPVTAAGAERLGVEVDVVSSKFHSFDGIIDVLNVKLVPRFRI