Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022150 | sp|Q0WVU3|PHL5_ARATH | 41.916 | 167 | 78 | 5 | 140 | 287 | 156 | 322 | 4.61e-27 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022150 | A0A072VJ98 | 86.025 | 322 | 21 | 4 | 1 | 300 | 1 | 320 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0022150 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022150 | MtrunA17_Chr1g0175071 | 86.025 | 322 | 21 | 4 | 1 | 300 | 1 | 320 | 0.0 | 533 |
| Msa0022150 | MtrunA17_Chr7g0258531 | 42.545 | 275 | 108 | 11 | 53 | 293 | 90 | 348 | 5.25e-47 | 161 |
| Msa0022150 | MtrunA17_Chr1g0175091 | 48.889 | 135 | 54 | 4 | 167 | 287 | 254 | 387 | 5.50e-27 | 109 |
| Msa0022150 | MtrunA17_Chr7g0258551 | 48.092 | 131 | 54 | 3 | 171 | 287 | 212 | 342 | 1.35e-25 | 104 |
| Msa0022150 | MtrunA17_Chr7g0261911 | 43.284 | 134 | 61 | 3 | 167 | 285 | 258 | 391 | 8.91e-25 | 103 |
| Msa0022150 | MtrunA17_Chr2g0291021 | 45.522 | 134 | 56 | 4 | 171 | 287 | 49 | 182 | 1.72e-24 | 100 |
| Msa0022150 | MtrunA17_Chr1g0190301 | 35.023 | 217 | 117 | 6 | 91 | 287 | 94 | 306 | 3.03e-24 | 101 |
| Msa0022150 | MtrunA17_Chr7g0274471 | 40.909 | 132 | 63 | 3 | 171 | 287 | 218 | 349 | 7.34e-21 | 92.0 |
| Msa0022150 | MtrunA17_Chr7g0254981 | 36.957 | 138 | 69 | 3 | 168 | 287 | 47 | 184 | 9.44e-21 | 89.7 |
| Msa0022150 | MtrunA17_Chr8g0356501 | 37.838 | 148 | 74 | 4 | 166 | 295 | 32 | 179 | 5.00e-19 | 85.9 |
| Msa0022150 | MtrunA17_Chr6g0461641 | 35.948 | 153 | 67 | 4 | 166 | 287 | 37 | 189 | 2.22e-18 | 84.7 |
| Msa0022150 | MtrunA17_Chr2g0310011 | 39.394 | 132 | 62 | 4 | 166 | 279 | 30 | 161 | 2.45e-18 | 84.0 |
| Msa0022150 | MtrunA17_Chr2g0321461 | 34.146 | 164 | 73 | 6 | 166 | 294 | 40 | 203 | 3.00e-16 | 78.6 |
| Msa0022150 | MtrunA17_Chr5g0417521 | 34.247 | 146 | 69 | 4 | 164 | 282 | 8 | 153 | 9.65e-16 | 76.6 |
| Msa0022150 | MtrunA17_Chr4g0042451 | 34.965 | 143 | 67 | 4 | 166 | 282 | 12 | 154 | 4.61e-15 | 74.7 |
| Msa0022150 | MtrunA17_Chr5g0409731 | 32.934 | 167 | 79 | 4 | 161 | 297 | 15 | 178 | 9.04e-15 | 73.2 |
| Msa0022150 | MtrunA17_Chr2g0290991 | 51.471 | 68 | 30 | 1 | 154 | 221 | 25 | 89 | 1.61e-14 | 72.8 |
| Msa0022150 | MtrunA17_Chr7g0242521 | 37.143 | 140 | 71 | 4 | 167 | 289 | 9 | 148 | 1.87e-14 | 71.6 |
| Msa0022150 | MtrunA17_Chr1g0197171 | 52.308 | 65 | 28 | 1 | 157 | 221 | 33 | 94 | 5.63e-14 | 70.9 |
| Msa0022150 | MtrunA17_Chr1g0162931 | 57.143 | 56 | 24 | 0 | 173 | 228 | 20 | 75 | 3.39e-13 | 68.6 |
| Msa0022150 | MtrunA17_Chr8g0379121 | 51.613 | 62 | 26 | 1 | 173 | 230 | 113 | 174 | 3.59e-13 | 69.3 |
| Msa0022150 | MtrunA17_Chr3g0095611 | 56.140 | 57 | 25 | 0 | 173 | 229 | 21 | 77 | 4.60e-13 | 67.0 |
| Msa0022150 | MtrunA17_Chr1g0210911 | 53.448 | 58 | 27 | 0 | 173 | 230 | 24 | 81 | 6.31e-13 | 68.2 |
| Msa0022150 | MtrunA17_Chr2g0320231 | 51.613 | 62 | 26 | 1 | 173 | 230 | 99 | 160 | 1.24e-12 | 67.8 |
| Msa0022150 | MtrunA17_Chr2g0288601 | 58.000 | 50 | 21 | 0 | 173 | 222 | 73 | 122 | 1.49e-12 | 63.5 |
| Msa0022150 | MtrunA17_Chr2g0283951 | 61.224 | 49 | 19 | 0 | 173 | 221 | 91 | 139 | 3.24e-12 | 66.2 |
| Msa0022150 | MtrunA17_Chr1g0175081 | 57.143 | 49 | 21 | 0 | 173 | 221 | 24 | 72 | 1.01e-11 | 60.5 |
| Msa0022150 | MtrunA17_Chr7g0243081 | 54.000 | 50 | 23 | 0 | 173 | 222 | 73 | 122 | 3.72e-11 | 63.2 |
| Msa0022150 | MtrunA17_Chr8g0366281 | 44.615 | 65 | 32 | 1 | 173 | 233 | 175 | 239 | 5.19e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022150 | AT5G06800.1 | 41.916 | 167 | 78 | 5 | 140 | 287 | 156 | 322 | 4.69e-28 | 111 |
| Msa0022150 | AT5G06800.2 | 39.535 | 172 | 80 | 4 | 140 | 287 | 156 | 327 | 1.15e-26 | 108 |
| Msa0022150 | AT2G01060.1 | 45.865 | 133 | 56 | 4 | 171 | 287 | 15 | 147 | 2.21e-24 | 100 |
| Msa0022150 | AT4G28610.1 | 44.030 | 134 | 59 | 4 | 168 | 285 | 222 | 355 | 2.69e-23 | 99.0 |
| Msa0022150 | AT5G29000.2 | 40.288 | 139 | 65 | 3 | 167 | 287 | 227 | 365 | 5.98e-22 | 95.5 |
| Msa0022150 | AT5G29000.1 | 40.288 | 139 | 65 | 3 | 167 | 287 | 184 | 322 | 7.92e-22 | 94.7 |
| Msa0022150 | AT5G29000.3 | 40.288 | 139 | 65 | 3 | 167 | 287 | 184 | 322 | 7.92e-22 | 94.7 |
| Msa0022150 | AT3G04450.1 | 37.589 | 141 | 70 | 3 | 171 | 293 | 238 | 378 | 4.85e-21 | 93.2 |
| Msa0022150 | AT3G04450.4 | 37.589 | 141 | 70 | 3 | 171 | 293 | 198 | 338 | 5.82e-21 | 92.4 |
| Msa0022150 | AT3G04450.2 | 37.589 | 141 | 70 | 3 | 171 | 293 | 198 | 338 | 5.82e-21 | 92.4 |
| Msa0022150 | AT5G18240.5 | 36.054 | 147 | 66 | 3 | 166 | 284 | 40 | 186 | 6.56e-20 | 89.4 |
| Msa0022150 | AT3G13040.3 | 40.426 | 141 | 64 | 4 | 167 | 287 | 237 | 377 | 1.02e-19 | 89.4 |
| Msa0022150 | AT3G13040.1 | 40.426 | 141 | 64 | 4 | 167 | 287 | 237 | 377 | 1.02e-19 | 89.4 |
| Msa0022150 | AT3G13040.2 | 40.426 | 141 | 64 | 4 | 167 | 287 | 237 | 377 | 1.02e-19 | 89.4 |
| Msa0022150 | AT3G04030.3 | 35.625 | 160 | 73 | 4 | 155 | 284 | 29 | 188 | 1.36e-19 | 88.6 |
| Msa0022150 | AT4G13640.1 | 34.320 | 169 | 84 | 3 | 154 | 295 | 20 | 188 | 1.27e-18 | 84.3 |
| Msa0022150 | AT2G20400.1 | 40.000 | 130 | 63 | 3 | 171 | 285 | 231 | 360 | 2.44e-18 | 85.1 |
| Msa0022150 | AT4G13640.2 | 33.721 | 172 | 84 | 3 | 154 | 295 | 20 | 191 | 2.75e-18 | 83.6 |
| Msa0022150 | AT5G18240.1 | 35.570 | 149 | 66 | 4 | 166 | 284 | 40 | 188 | 4.13e-18 | 84.3 |
| Msa0022150 | AT5G18240.4 | 35.570 | 149 | 66 | 4 | 166 | 284 | 40 | 188 | 4.13e-18 | 84.3 |
| Msa0022150 | AT3G04030.1 | 34.177 | 158 | 72 | 4 | 155 | 284 | 29 | 182 | 5.26e-18 | 84.0 |
| Msa0022150 | AT1G79430.2 | 37.415 | 147 | 74 | 4 | 166 | 294 | 29 | 175 | 5.70e-18 | 83.6 |
| Msa0022150 | AT3G24120.1 | 34.320 | 169 | 84 | 4 | 154 | 295 | 24 | 192 | 8.16e-18 | 82.4 |
| Msa0022150 | AT2G20400.2 | 40.458 | 131 | 62 | 4 | 171 | 285 | 231 | 361 | 2.71e-17 | 82.0 |
| Msa0022150 | AT3G24120.2 | 34.302 | 172 | 83 | 4 | 154 | 295 | 24 | 195 | 2.90e-17 | 80.9 |
| Msa0022150 | AT5G18240.2 | 34.014 | 147 | 65 | 4 | 166 | 284 | 40 | 182 | 1.26e-16 | 80.1 |
| Msa0022150 | AT5G18240.3 | 34.014 | 147 | 65 | 4 | 166 | 284 | 40 | 182 | 1.26e-16 | 80.1 |
| Msa0022150 | AT3G12730.1 | 33.117 | 154 | 56 | 4 | 166 | 284 | 18 | 159 | 3.30e-15 | 73.9 |
| Msa0022150 | AT1G69580.1 | 34.437 | 151 | 63 | 4 | 166 | 282 | 29 | 177 | 1.66e-14 | 73.2 |
| Msa0022150 | AT5G29000.4 | 58.182 | 55 | 23 | 0 | 167 | 221 | 227 | 281 | 2.15e-14 | 72.8 |
| Msa0022150 | AT1G69580.2 | 33.553 | 152 | 64 | 4 | 166 | 282 | 29 | 178 | 5.38e-14 | 72.0 |
| Msa0022150 | AT5G06800.3 | 43.182 | 88 | 45 | 1 | 139 | 221 | 155 | 242 | 8.05e-14 | 70.9 |
| Msa0022150 | AT3G04450.3 | 56.863 | 51 | 22 | 0 | 171 | 221 | 238 | 288 | 1.82e-13 | 70.1 |
| Msa0022150 | AT4G04605.1 | 60.000 | 50 | 20 | 0 | 173 | 222 | 16 | 65 | 9.29e-13 | 66.6 |
| Msa0022150 | AT2G42660.1 | 56.000 | 50 | 22 | 0 | 173 | 222 | 52 | 101 | 1.04e-12 | 67.0 |
| Msa0022150 | AT2G40260.1 | 53.125 | 64 | 27 | 1 | 173 | 236 | 84 | 144 | 1.48e-12 | 67.8 |
| Msa0022150 | AT4G04580.1 | 39.252 | 107 | 53 | 3 | 173 | 278 | 16 | 111 | 1.71e-12 | 64.7 |
| Msa0022150 | AT1G14600.1 | 62.000 | 50 | 19 | 0 | 173 | 222 | 25 | 74 | 2.71e-12 | 65.9 |
| Msa0022150 | AT5G45580.1 | 50.000 | 56 | 28 | 0 | 166 | 221 | 2 | 57 | 3.25e-12 | 65.9 |
| Msa0022150 | AT5G45580.2 | 52.941 | 51 | 24 | 0 | 171 | 221 | 23 | 73 | 4.33e-12 | 65.9 |
| Msa0022150 | AT2G38300.1 | 44.928 | 69 | 34 | 1 | 173 | 237 | 56 | 124 | 8.27e-12 | 65.5 |
| Msa0022150 | AT2G06020.1 | 39.175 | 97 | 55 | 2 | 158 | 253 | 76 | 169 | 9.64e-12 | 65.1 |
| Msa0022150 | AT5G42630.1 | 41.975 | 81 | 40 | 2 | 157 | 233 | 94 | 171 | 1.41e-11 | 64.3 |
| Msa0022150 | AT5G42630.2 | 41.975 | 81 | 40 | 2 | 157 | 233 | 94 | 171 | 1.95e-11 | 63.2 |
| Msa0022150 | AT2G02060.2 | 58.000 | 50 | 21 | 0 | 173 | 222 | 31 | 80 | 2.70e-11 | 63.2 |
| Msa0022150 | AT2G02060.1 | 58.000 | 50 | 21 | 0 | 173 | 222 | 31 | 80 | 2.70e-11 | 63.2 |
Find 50 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAACAACCTGCTTCAAAT+TGG | 0.204478 | 1_1:-41225708 | Msa0022150:CDS |
| CAGCCTTGACAATACATAAA+AGG | 0.269493 | 1_1:+41225770 | None:intergenic |
| ATGAGTTTGACATACCTATT+TGG | 0.292306 | 1_1:-41225829 | Msa0022150:CDS |
| GTGATTCTTCTATTTGCATT+TGG | 0.336254 | 1_1:+41223158 | None:intergenic |
| GAAAATTTATTGCTCCAAAT+AGG | 0.344575 | 1_1:+41225815 | None:intergenic |
| TCATGTCAAAAGTCATTTGC+AGG | 0.353917 | 1_1:-41224352 | Msa0022150:CDS |
| TTCCCTCTTGTTCTAATAAG+AGG | 0.359635 | 1_1:-41225622 | Msa0022150:CDS |
| CTAAAATGTACATAAATCAT+TGG | 0.360570 | 1_1:-41225979 | None:intergenic |
| ATTATATAAACTTACTTTCT+GGG | 0.366001 | 1_1:+41224506 | None:intergenic |
| CCAACAACCTGCTTCAAATT+GGG | 0.382315 | 1_1:-41225707 | Msa0022150:CDS |
| ATTTCATGGAACCTCTGATC+TGG | 0.383924 | 1_1:+41225578 | None:intergenic |
| CCCAATTTGAAGCAGGTTGT+TGG | 0.384228 | 1_1:+41225707 | None:intergenic |
| GGTTGTTGGTTGATCTTGTT+TGG | 0.395689 | 1_1:+41225721 | None:intergenic |
| TAAAATGTACATAAATCATT+GGG | 0.405097 | 1_1:-41225978 | None:intergenic |
| TTGATCTTGAAAATTCATAA+AGG | 0.413952 | 1_1:+41225865 | None:intergenic |
| GACATATCAGCAATCATTCA+TGG | 0.436755 | 1_1:-41225905 | Msa0022150:CDS |
| ACAAAAGAAAAGAACCAAAC+AGG | 0.442809 | 1_1:-41222770 | Msa0022150:CDS |
| ATCATTTGTAGTATAGCCTT+AGG | 0.450838 | 1_1:+41224399 | None:intergenic |
| TAAGGCTATACTACAAATGA+TGG | 0.452684 | 1_1:-41224397 | Msa0022150:CDS |
| TTCAGAACCCAATTTGAAGC+AGG | 0.463730 | 1_1:+41225700 | None:intergenic |
| TACTTTCTGGGCCACCAAGC+TGG | 0.476548 | 1_1:+41224518 | None:intergenic |
| ATTATTATTGTCAACCAGCT+TGG | 0.483051 | 1_1:-41224532 | Msa0022150:CDS |
| TTTCATGGAACCTCTGATCT+GGG | 0.484594 | 1_1:+41225579 | None:intergenic |
| TTGTTCTAATAAGAGGGTGC+TGG | 0.513933 | 1_1:-41225615 | Msa0022150:CDS |
| TCCCTCTTGTTCTAATAAGA+GGG | 0.514383 | 1_1:-41225621 | Msa0022150:CDS |
| GATGCAGCGAAATTTGCAAC+TGG | 0.519384 | 1_1:-41222836 | Msa0022150:intron |
| ATTATTGTCAACCAGCTTGG+TGG | 0.523219 | 1_1:-41224529 | Msa0022150:CDS |
| GAGGAAGGACAGATAACAGA+TGG | 0.535680 | 1_1:-41223342 | Msa0022150:CDS |
| AGGGTAAAAGAAGATTAAGA+TGG | 0.538823 | 1_1:-41224579 | Msa0022150:CDS |
| CACCCTCTTATTAGAACAAG+AGG | 0.558672 | 1_1:+41225619 | None:intergenic |
| AAAGGTGAATCTGTTGTTGT+TGG | 0.559028 | 1_1:+41225788 | None:intergenic |
| TTAATCAGAGGCAAAGCCTA+AGG | 0.566249 | 1_1:-41224415 | Msa0022150:intron |
| GAGCAATCAACGACAATTCG+AGG | 0.567446 | 1_1:-41223110 | Msa0022150:intron |
| AACTACAACTTGAGGTTGAG+AGG | 0.574473 | 1_1:-41223132 | Msa0022150:CDS |
| AGAGGACTAACTATGCTACA+AGG | 0.576073 | 1_1:+41225932 | None:intergenic |
| AATTTCCTTTCAGAAAACTC+AGG | 0.594791 | 1_1:-41225558 | Msa0022150:intron |
| GACAAACAATCTTCACCTTG+TGG | 0.605075 | 1_1:-41224625 | Msa0022150:CDS |
| TTCATGGAACCTCTGATCTG+GGG | 0.609227 | 1_1:+41225580 | None:intergenic |
| AAGGCTATACTACAAATGAT+GGG | 0.610409 | 1_1:-41224396 | Msa0022150:CDS |
| CTGTGTTGCAGGAGTATCTG+AGG | 0.610708 | 1_1:-41223361 | Msa0022150:intron |
| ATTGCTGATATGTCCTCTAG+AGG | 0.610808 | 1_1:+41225914 | None:intergenic |
| AGGAAGGACAGATAACAGAT+GGG | 0.621828 | 1_1:-41223341 | Msa0022150:CDS |
| TAGCATAGTTAGTCCTCTAG+AGG | 0.629733 | 1_1:-41225927 | Msa0022150:CDS |
| ATCACGACAACTACAACTTG+AGG | 0.638258 | 1_1:-41223140 | Msa0022150:CDS |
| GAGGACTAACTATGCTACAA+GGG | 0.646307 | 1_1:+41225933 | None:intergenic |
| TATACTACAAATGATGGGTG+TGG | 0.647886 | 1_1:-41224391 | Msa0022150:CDS |
| GTATGTCAAACTCATGCTGA+TGG | 0.650055 | 1_1:+41225837 | None:intergenic |
| GTTGCAGGAGTATCTGAGGA+AGG | 0.655805 | 1_1:-41223357 | Msa0022150:intron |
| ACCCTCTTATTAGAACAAGA+GGG | 0.671675 | 1_1:+41225620 | None:intergenic |
| ATCTTAAAATCAAAGCCACA+AGG | 0.681713 | 1_1:+41224610 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATGAAACAATTAT+TGG | + | chr1_1:41223466-41223485 | None:intergenic | 10.0% |
| !!! | GTTTATATAATTCATTTTAT+AGG | - | chr1_1:41224221-41224240 | Msa0022150:intron | 10.0% |
| !! | AAAATAATTAAAAATAGAGA+AGG | - | chr1_1:41224899-41224918 | Msa0022150:intron | 10.0% |
| !! | AAATATTTGACAAAAAAAAA+GGG | + | chr1_1:41225098-41225117 | None:intergenic | 10.0% |
| !! | TAAATATTTGACAAAAAAAA+AGG | + | chr1_1:41225099-41225118 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATCAGTAAATA+TGG | + | chr1_1:41225248-41225267 | None:intergenic | 10.0% |
| !!! | ATATTTTATATCAAGAATTA+AGG | - | chr1_1:41225700-41225719 | Msa0022150:CDS | 10.0% |
| !! | AAAGAGTCATATAAAAATTA+AGG | + | chr1_1:41223574-41223593 | None:intergenic | 15.0% |
| !!! | ATTATTGATTACAATGAATT+TGG | - | chr1_1:41223622-41223641 | Msa0022150:intron | 15.0% |
| !!! | TTATTGATTACAATGAATTT+GGG | - | chr1_1:41223623-41223642 | Msa0022150:intron | 15.0% |
| !! | ATTATATAAACTTACTTTCT+GGG | + | chr1_1:41224212-41224231 | None:intergenic | 15.0% |
| !! | AATTATATAAACTTACTTTC+TGG | + | chr1_1:41224213-41224232 | None:intergenic | 15.0% |
| !! | TTAAGTATAATTATATGTGT+CGG | + | chr1_1:41224524-41224543 | None:intergenic | 15.0% |
| !! | TTAATAATTTATTAGCGATA+TGG | - | chr1_1:41224554-41224573 | Msa0022150:CDS | 15.0% |
| !! | TAATAATTTATTAGCGATAT+GGG | - | chr1_1:41224555-41224574 | Msa0022150:CDS | 15.0% |
| !! | TTGAAATTGAAAACTAAATT+TGG | + | chr1_1:41224754-41224773 | None:intergenic | 15.0% |
| !! | TATAAGTAACAAAAATAAGA+AGG | + | chr1_1:41225028-41225047 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTCAAATATTTAG+TGG | - | chr1_1:41225100-41225119 | Msa0022150:intron | 15.0% |
| !! | AAAAATAATGCATTTATTCA+GGG | + | chr1_1:41225171-41225190 | None:intergenic | 15.0% |
| !! | AAAAAATAATGCATTTATTC+AGG | + | chr1_1:41225172-41225191 | None:intergenic | 15.0% |
| !!! | ATCTTAATCACATAATTTTA+AGG | + | chr1_1:41225446-41225465 | None:intergenic | 15.0% |
| !!! | TAATTAATTATTTTGTCTTG+TGG | - | chr1_1:41225853-41225872 | Msa0022150:CDS | 15.0% |
| !! | TTGATCTTGAAAATTCATAA+AGG | + | chr1_1:41222853-41222872 | None:intergenic | 20.0% |
| !! | AATTTGAAGAGTAATAAGAA+AGG | + | chr1_1:41223206-41223225 | None:intergenic | 20.0% |
| !!! | ATTACTCTTCAAATTTTTGT+TGG | - | chr1_1:41223211-41223230 | Msa0022150:intron | 20.0% |
| !!! | TGATAAAATGATATCCTTTT+AGG | + | chr1_1:41223681-41223700 | None:intergenic | 20.0% |
| !!! | GGTTCAATTAATTTTTAAGT+CGG | - | chr1_1:41223824-41223843 | Msa0022150:intron | 20.0% |
| !!! | GTAGTTTTTGAAGTAATAAA+AGG | - | chr1_1:41223953-41223972 | Msa0022150:intron | 20.0% |
| !!! | TTTAATCATTGATTAATCAG+AGG | - | chr1_1:41224288-41224307 | Msa0022150:intron | 20.0% |
| !! | TAATAGTAGAATAATGAACA+AGG | + | chr1_1:41224702-41224721 | None:intergenic | 20.0% |
| !!! | ATGATAATGTATAAGATTCT+TGG | + | chr1_1:41224992-41225011 | None:intergenic | 20.0% |
| !! | AGTAAAATATATAGAAGAGT+GGG | + | chr1_1:41225056-41225075 | None:intergenic | 20.0% |
| !! | AAGTAAAATATATAGAAGAG+TGG | + | chr1_1:41225057-41225076 | None:intergenic | 20.0% |
| !! | TGAATATGAACAATTAAAGA+AGG | + | chr1_1:41225469-41225488 | None:intergenic | 20.0% |
| !! | CTTTAATTGTTCATATTCAT+TGG | - | chr1_1:41225470-41225489 | Msa0022150:intron | 20.0% |
| !! | ATTATTGACATCAAGAATTT+AGG | - | chr1_1:41225642-41225661 | Msa0022150:CDS | 20.0% |
| !! | GAATTAAGGAAATATTATGT+TGG | - | chr1_1:41225714-41225733 | Msa0022150:CDS | 20.0% |
| ! | GAAAATTTATTGCTCCAAAT+AGG | + | chr1_1:41222903-41222922 | None:intergenic | 25.0% |
| !!! | TTTTCTGAAAGGAAATTTCA+TGG | + | chr1_1:41223154-41223173 | None:intergenic | 25.0% |
| ! | AACCATTGTTAATTAGTCAA+TGG | - | chr1_1:41223238-41223257 | Msa0022150:intron | 25.0% |
| !! | ATCCATTGACTAATTAACAA+TGG | + | chr1_1:41223243-41223262 | None:intergenic | 25.0% |
| !! | GAAACAATTATTGGTTAAAG+AGG | + | chr1_1:41223457-41223476 | None:intergenic | 25.0% |
| ! | TAATTGACTACAGTTTCAAT+TGG | - | chr1_1:41223598-41223617 | Msa0022150:intron | 25.0% |
| ! | TTTAGGTATACATATTGCTT+TGG | + | chr1_1:41223664-41223683 | None:intergenic | 25.0% |
| ! | AAGCAATATGTATACCTAAA+AGG | - | chr1_1:41223664-41223683 | Msa0022150:intron | 25.0% |
| !! | TCATCATACACATTTAAGAT+TGG | + | chr1_1:41223855-41223874 | None:intergenic | 25.0% |
| ! | AAACTTCTAAATGGATCATT+GGG | + | chr1_1:41223989-41224008 | None:intergenic | 25.0% |
| ! | GTTACAAAGAAACTTCTAAA+TGG | + | chr1_1:41223998-41224017 | None:intergenic | 25.0% |
| ! | ACTATGATAAGACATTTATG+AGG | + | chr1_1:41224050-41224069 | None:intergenic | 25.0% |
| ! | TCATAAATGTCTTATCATAG+TGG | - | chr1_1:41224049-41224068 | Msa0022150:intron | 25.0% |
| ! | CATAAATGTCTTATCATAGT+GGG | - | chr1_1:41224050-41224069 | Msa0022150:intron | 25.0% |
| !!! | TGATTTTAAGATAACTGCAA+AGG | - | chr1_1:41224116-41224135 | Msa0022150:intron | 25.0% |
| !!! | GATTTTAAGATAACTGCAAA+GGG | - | chr1_1:41224117-41224136 | Msa0022150:intron | 25.0% |
| ! | TTATACTTTACCCTCAAAAT+AGG | + | chr1_1:41224431-41224450 | None:intergenic | 25.0% |
| ! | GGTTAAAATGCATTTCATAA+AGG | + | chr1_1:41224733-41224752 | None:intergenic | 25.0% |
| ! | AAATAAGAAGGTAAAAATCG+TGG | + | chr1_1:41225016-41225035 | None:intergenic | 25.0% |
| ! | CAACACAGGTAAATTAATAT+TGG | + | chr1_1:41225342-41225361 | None:intergenic | 25.0% |
| ! | TAGCTTCTTCAAAAAGATTA+AGG | - | chr1_1:41225814-41225833 | Msa0022150:CDS | 25.0% |
| ATGAGTTTGACATACCTATT+TGG | - | chr1_1:41222886-41222905 | Msa0022150:intron | 30.0% | |
| ! | TCACCTTTTATGTATTGTCA+AGG | - | chr1_1:41222942-41222961 | Msa0022150:intron | 30.0% |
| AATTTCCTTTCAGAAAACTC+AGG | - | chr1_1:41223157-41223176 | Msa0022150:CDS | 30.0% | |
| AACTTCTAACACACAAGTTA+AGG | + | chr1_1:41223341-41223360 | None:intergenic | 30.0% | |
| !! | TTGTTGGACATCTTTTAAAG+CGG | - | chr1_1:41223803-41223822 | Msa0022150:intron | 30.0% |
| !!! | CTATCGTTTGATTTTTTCAG+CGG | + | chr1_1:41223888-41223907 | None:intergenic | 30.0% |
| GAAACTTCTAAATGGATCAT+TGG | + | chr1_1:41223990-41224009 | None:intergenic | 30.0% | |
| ATCTTAAAATCAAAGCCACA+AGG | + | chr1_1:41224108-41224127 | None:intergenic | 30.0% | |
| AGGGTAAAAGAAGATTAAGA+TGG | - | chr1_1:41224136-41224155 | Msa0022150:intron | 30.0% | |
| ATTATTATTGTCAACCAGCT+TGG | - | chr1_1:41224183-41224202 | Msa0022150:intron | 30.0% | |
| GATTAAATTAAGCACTAGCT+AGG | + | chr1_1:41224275-41224294 | None:intergenic | 30.0% | |
| ATCATTTGTAGTATAGCCTT+AGG | + | chr1_1:41224319-41224338 | None:intergenic | 30.0% | |
| TAAGGCTATACTACAAATGA+TGG | - | chr1_1:41224318-41224337 | Msa0022150:intron | 30.0% | |
| AAGGCTATACTACAAATGAT+GGG | - | chr1_1:41224319-41224338 | Msa0022150:intron | 30.0% | |
| ! | ATGACTTTTGACATGAGAAA+TGG | + | chr1_1:41224359-41224378 | None:intergenic | 30.0% |
| ! | ATATGCATGTACCTATTTTG+AGG | - | chr1_1:41224417-41224436 | Msa0022150:intron | 30.0% |
| !! | TATGCATGTACCTATTTTGA+GGG | - | chr1_1:41224418-41224437 | Msa0022150:intron | 30.0% |
| GTAATTCACTTTAATCTGTG+TGG | - | chr1_1:41224676-41224695 | Msa0022150:intron | 30.0% | |
| TATATTGAGTGAATTCAGTG+TGG | + | chr1_1:41224862-41224881 | None:intergenic | 30.0% | |
| TAGAGAAGGAAAAATGTGAA+AGG | - | chr1_1:41224913-41224932 | Msa0022150:intron | 30.0% | |
| ATAATGCATTTATTCAGGGT+GGG | + | chr1_1:41225167-41225186 | None:intergenic | 30.0% | |
| AATAATGCATTTATTCAGGG+TGG | + | chr1_1:41225168-41225187 | None:intergenic | 30.0% | |
| TCTCATGAGTATAGTTCAAT+TGG | + | chr1_1:41225220-41225239 | None:intergenic | 30.0% | |
| CACAGGTAAATTAATATTGG+AGG | + | chr1_1:41225339-41225358 | None:intergenic | 30.0% | |
| TATTAATTTACCTGTGTTGC+AGG | - | chr1_1:41225343-41225362 | Msa0022150:intron | 30.0% | |
| GTGATTCTTCTATTTGCATT+TGG | + | chr1_1:41225560-41225579 | None:intergenic | 30.0% | |
| AATATTATGTTGGCCGATAT+TGG | - | chr1_1:41225724-41225743 | Msa0022150:CDS | 30.0% | |
| ACAAAAGAAAAGAACCAAAC+AGG | - | chr1_1:41225945-41225964 | Msa0022150:CDS | 30.0% | |
| GACATATCAGCAATCATTCA+TGG | - | chr1_1:41222810-41222829 | Msa0022150:CDS | 35.0% | |
| AAAGGTGAATCTGTTGTTGT+TGG | + | chr1_1:41222930-41222949 | None:intergenic | 35.0% | |
| CAGCCTTGACAATACATAAA+AGG | + | chr1_1:41222948-41222967 | None:intergenic | 35.0% | |
| TTCCCTCTTGTTCTAATAAG+AGG | - | chr1_1:41223093-41223112 | Msa0022150:intron | 35.0% | |
| TCCCTCTTGTTCTAATAAGA+GGG | - | chr1_1:41223094-41223113 | Msa0022150:intron | 35.0% | |
| ACCCTCTTATTAGAACAAGA+GGG | + | chr1_1:41223098-41223117 | None:intergenic | 35.0% | |
| ! | AATCACCTGAGTTTTCTGAA+AGG | + | chr1_1:41223165-41223184 | None:intergenic | 35.0% |
| TCTATATCATGTTCCGCATT+GGG | + | chr1_1:41223302-41223321 | None:intergenic | 35.0% | |
| TTCTATATCATGTTCCGCAT+TGG | + | chr1_1:41223303-41223322 | None:intergenic | 35.0% | |
| ! | AGCTCTGATGTTAGATATGT+CGG | - | chr1_1:41223417-41223436 | Msa0022150:intron | 35.0% |
| ! | TTTGATTTCACTCGATAAGG+AGG | + | chr1_1:41223514-41223533 | None:intergenic | 35.0% |
| ! | GAGTTTGATTTCACTCGATA+AGG | + | chr1_1:41223517-41223536 | None:intergenic | 35.0% |
| ! | TTTAGAGCAATTTCAGCAGT+GGG | + | chr1_1:41223740-41223759 | None:intergenic | 35.0% |
| !!! | TTTTAGAGCAATTTCAGCAG+TGG | + | chr1_1:41223741-41223760 | None:intergenic | 35.0% |
| AAACTATTCCAGCAATCGTT+CGG | - | chr1_1:41223758-41223777 | Msa0022150:intron | 35.0% | |
| !!! | ATTTTTTCAGCGGTAGTGAA+CGG | + | chr1_1:41223878-41223897 | None:intergenic | 35.0% |
| AGACATTTATGAGGCAGTTT+AGG | + | chr1_1:41224041-41224060 | None:intergenic | 35.0% | |
| !! | TATACTACAAATGATGGGTG+TGG | - | chr1_1:41224324-41224343 | Msa0022150:intron | 35.0% |
| TCATGTCAAAAGTCATTTGC+AGG | - | chr1_1:41224363-41224382 | Msa0022150:CDS | 35.0% | |
| TATAAAGCACAAACACTCCT+CGG | - | chr1_1:41224446-41224465 | Msa0022150:intron | 35.0% | |
| GAAGGAAAAATGTGAAAGGA+AGG | - | chr1_1:41224917-41224936 | Msa0022150:intron | 35.0% | |
| !! | AAGGTTTGCTAAGTAGAGAA+GGG | - | chr1_1:41224936-41224955 | Msa0022150:intron | 35.0% |
| ! | CTTGGTTCTTAATGTGTCTA+CGG | + | chr1_1:41224974-41224993 | None:intergenic | 35.0% |
| TAATGCATTTATTCAGGGTG+GGG | + | chr1_1:41225166-41225185 | None:intergenic | 35.0% | |
| AAAGGATGGAGTAGGAAATT+TGG | + | chr1_1:41225533-41225552 | None:intergenic | 35.0% | |
| CTATTTGCATTTGGCTACAA+AGG | + | chr1_1:41225551-41225570 | None:intergenic | 35.0% | |
| GAGGACTAACTATGCTACAA+GGG | + | chr1_1:41222785-41222804 | None:intergenic | 40.0% | |
| AGAGGACTAACTATGCTACA+AGG | + | chr1_1:41222786-41222805 | None:intergenic | 40.0% | |
| TAGCATAGTTAGTCCTCTAG+AGG | - | chr1_1:41222788-41222807 | Msa0022150:CDS | 40.0% | |
| ATTGCTGATATGTCCTCTAG+AGG | + | chr1_1:41222804-41222823 | None:intergenic | 40.0% | |
| GTATGTCAAACTCATGCTGA+TGG | + | chr1_1:41222881-41222900 | None:intergenic | 40.0% | |
| ! | GGTTGTTGGTTGATCTTGTT+TGG | + | chr1_1:41222997-41223016 | None:intergenic | 40.0% |
| ACCAACAACCTGCTTCAAAT+TGG | - | chr1_1:41223007-41223026 | Msa0022150:intron | 40.0% | |
| CCAACAACCTGCTTCAAATT+GGG | - | chr1_1:41223008-41223027 | Msa0022150:intron | 40.0% | |
| ! | TTCAGAACCCAATTTGAAGC+AGG | + | chr1_1:41223018-41223037 | None:intergenic | 40.0% |
| CACCCTCTTATTAGAACAAG+AGG | + | chr1_1:41223099-41223118 | None:intergenic | 40.0% | |
| ! | TTGTTCTAATAAGAGGGTGC+TGG | - | chr1_1:41223100-41223119 | Msa0022150:intron | 40.0% |
| TTTCATGGAACCTCTGATCT+GGG | + | chr1_1:41223139-41223158 | None:intergenic | 40.0% | |
| ATTTCATGGAACCTCTGATC+TGG | + | chr1_1:41223140-41223159 | None:intergenic | 40.0% | |
| CGCATTGGGATACATCTATA+CGG | + | chr1_1:41223288-41223307 | None:intergenic | 40.0% | |
| CGTATAGATGTATCCCAATG+CGG | - | chr1_1:41223286-41223305 | Msa0022150:intron | 40.0% | |
| ! | TTCTTTGTTTGTCGAAGTCG+CGG | - | chr1_1:41223540-41223559 | Msa0022150:intron | 40.0% |
| TTGCTTTGGCAAAGTACAGA+TGG | + | chr1_1:41223650-41223669 | None:intergenic | 40.0% | |
| TAGCGGGAGTTAATTGTTGT+TGG | - | chr1_1:41223787-41223806 | Msa0022150:intron | 40.0% | |
| GACAAACAATCTTCACCTTG+TGG | - | chr1_1:41224090-41224109 | Msa0022150:intron | 40.0% | |
| ATTATTGTCAACCAGCTTGG+TGG | - | chr1_1:41224186-41224205 | Msa0022150:intron | 40.0% | |
| TTAATCAGAGGCAAAGCCTA+AGG | - | chr1_1:41224300-41224319 | Msa0022150:intron | 40.0% | |
| GATTAGACGTGTCCTGATAT+CGG | - | chr1_1:41224468-41224487 | Msa0022150:intron | 40.0% | |
| CACACGCACAAATGTTTGAA+AGG | - | chr1_1:41224654-41224673 | Msa0022150:intron | 40.0% | |
| !! | GAAGGTTTGCTAAGTAGAGA+AGG | - | chr1_1:41224935-41224954 | Msa0022150:intron | 40.0% |
| AATGCATTTATTCAGGGTGG+GGG | + | chr1_1:41225165-41225184 | None:intergenic | 40.0% | |
| AGGAAGGACAGATAACAGAT+GGG | - | chr1_1:41225374-41225393 | Msa0022150:intron | 40.0% | |
| TTGCATTTGGCTACAAAGGA+TGG | + | chr1_1:41225547-41225566 | None:intergenic | 40.0% | |
| ATCACGACAACTACAACTTG+AGG | - | chr1_1:41225575-41225594 | Msa0022150:CDS | 40.0% | |
| AACTACAACTTGAGGTTGAG+AGG | - | chr1_1:41225583-41225602 | Msa0022150:CDS | 40.0% | |
| ATCAACGACAATTCGAGGTA+CGG | - | chr1_1:41225610-41225629 | Msa0022150:CDS | 40.0% | |
| !! | ATCGGTCATTTTCTCCTGTT+TGG | + | chr1_1:41225962-41225981 | None:intergenic | 40.0% |
| ! | CCCAATTTGAAGCAGGTTGT+TGG | + | chr1_1:41223011-41223030 | None:intergenic | 45.0% |
| ! | GTGATTTTTCCCCAGATCAG+AGG | - | chr1_1:41223126-41223145 | Msa0022150:CDS | 45.0% |
| TTCATGGAACCTCTGATCTG+GGG | + | chr1_1:41223138-41223157 | None:intergenic | 45.0% | |
| TTCACTCGATAAGGAGGTTG+AGG | + | chr1_1:41223508-41223527 | None:intergenic | 45.0% | |
| TAGAAAAGCCGAACGATTGC+TGG | + | chr1_1:41223769-41223788 | None:intergenic | 45.0% | |
| ! | CAATCGTTCGGCTTTTCTAG+CGG | - | chr1_1:41223770-41223789 | Msa0022150:intron | 45.0% |
| !! | AATCGTTCGGCTTTTCTAGC+GGG | - | chr1_1:41223771-41223790 | Msa0022150:intron | 45.0% |
| !! | TATATGTGTCGGTGTCGTGT+CGG | + | chr1_1:41224513-41224532 | None:intergenic | 45.0% |
| GAGGAAGGACAGATAACAGA+TGG | - | chr1_1:41225373-41225392 | Msa0022150:intron | 45.0% | |
| TTGGCTACAAAGGATGGAGT+AGG | + | chr1_1:41225541-41225560 | None:intergenic | 45.0% | |
| GAGCAATCAACGACAATTCG+AGG | - | chr1_1:41225605-41225624 | Msa0022150:CDS | 45.0% | |
| ! | TATGTTGGCCGATATTGGCT+TGG | - | chr1_1:41225729-41225748 | Msa0022150:CDS | 45.0% |
| CATTGAAACCTGAGACCTTG+AGG | + | chr1_1:41225774-41225793 | None:intergenic | 45.0% | |
| GATGCAGCGAAATTTGCAAC+TGG | - | chr1_1:41225879-41225898 | Msa0022150:CDS | 45.0% | |
| !! | TATTATATCATAAAAATAAA+TGG | - | chr1_1:41223391-41223410 | Msa0022150:intron | 5.0% |
| TTTGTTTGTCGAAGTCGCGG+TGG | - | chr1_1:41223543-41223562 | Msa0022150:intron | 50.0% | |
| TTGTTTGTCGAAGTCGCGGT+GGG | - | chr1_1:41223544-41223563 | Msa0022150:intron | 50.0% | |
| ATCAGGACACGTCTAATCCG+AGG | + | chr1_1:41224466-41224485 | None:intergenic | 50.0% | |
| TACGACACGTGTCCGATATC+AGG | + | chr1_1:41224483-41224502 | None:intergenic | 50.0% | |
| CTCAGATACTCCTGCAACAC+AGG | + | chr1_1:41225356-41225375 | None:intergenic | 50.0% | |
| !! | CTGTGTTGCAGGAGTATCTG+AGG | - | chr1_1:41225354-41225373 | Msa0022150:intron | 50.0% |
| !! | GTTGCAGGAGTATCTGAGGA+AGG | - | chr1_1:41225358-41225377 | Msa0022150:intron | 50.0% |
| CCCAGGTTCCAAGCCAATAT+CGG | + | chr1_1:41225740-41225759 | None:intergenic | 50.0% | |
| !! | CCGATATTGGCTTGGAACCT+GGG | - | chr1_1:41225737-41225756 | Msa0022150:CDS | 50.0% |
| TACTTTCTGGGCCACCAAGC+TGG | + | chr1_1:41224200-41224219 | None:intergenic | 55.0% | |
| CAGGGTGGGGGTTCAAACTT+TGG | + | chr1_1:41225153-41225172 | None:intergenic | 55.0% | |
| !! | GCCGATATTGGCTTGGAACC+TGG | - | chr1_1:41225736-41225755 | Msa0022150:CDS | 55.0% |
| TTGAGGATGAGCACACTCCC+AGG | + | chr1_1:41225757-41225776 | None:intergenic | 55.0% | |
| ! | TGGGAGTGTGCTCATCCTCA+AGG | - | chr1_1:41225756-41225775 | Msa0022150:CDS | 55.0% |
| GTGCTCATCCTCAAGGTCTC+AGG | - | chr1_1:41225763-41225782 | Msa0022150:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 41222741 | 41225996 | 41222741 | ID=Msa0022150;Name=Msa0022150 |
| chr1_1 | mRNA | 41222741 | 41225996 | 41222741 | ID=Msa0022150-mRNA-1;Parent=Msa0022150;Name=Msa0022150-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|0.83|1|1|6|0|300 |
| chr1_1 | exon | 41225559 | 41225996 | 41225559 | ID=Msa0022150-mRNA-1:exon:12223;Parent=Msa0022150-mRNA-1 |
| chr1_1 | exon | 41224521 | 41224668 | 41224521 | ID=Msa0022150-mRNA-1:exon:12222;Parent=Msa0022150-mRNA-1 |
| chr1_1 | exon | 41224349 | 41224429 | 41224349 | ID=Msa0022150-mRNA-1:exon:12221;Parent=Msa0022150-mRNA-1 |
| chr1_1 | exon | 41223318 | 41223372 | 41223318 | ID=Msa0022150-mRNA-1:exon:12220;Parent=Msa0022150-mRNA-1 |
| chr1_1 | exon | 41223111 | 41223180 | 41223111 | ID=Msa0022150-mRNA-1:exon:12219;Parent=Msa0022150-mRNA-1 |
| chr1_1 | exon | 41222741 | 41222851 | 41222741 | ID=Msa0022150-mRNA-1:exon:12218;Parent=Msa0022150-mRNA-1 |
| chr1_1 | CDS | 41225559 | 41225996 | 41225559 | ID=Msa0022150-mRNA-1:cds;Parent=Msa0022150-mRNA-1 |
| chr1_1 | CDS | 41224521 | 41224668 | 41224521 | ID=Msa0022150-mRNA-1:cds;Parent=Msa0022150-mRNA-1 |
| chr1_1 | CDS | 41224349 | 41224429 | 41224349 | ID=Msa0022150-mRNA-1:cds;Parent=Msa0022150-mRNA-1 |
| chr1_1 | CDS | 41223318 | 41223372 | 41223318 | ID=Msa0022150-mRNA-1:cds;Parent=Msa0022150-mRNA-1 |
| chr1_1 | CDS | 41223111 | 41223180 | 41223111 | ID=Msa0022150-mRNA-1:cds;Parent=Msa0022150-mRNA-1 |
| chr1_1 | CDS | 41222741 | 41222851 | 41222741 | ID=Msa0022150-mRNA-1:cds;Parent=Msa0022150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
