AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0022210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0022210 MtrunA17_Chr1g0175201 96.587 293 7 1 1 290 1 293 0.0 575
Msa0022210 MtrunA17_Chr7g0258611 70.395 304 70 9 1 287 1 301 7.56e-136 386
Msa0022210 MtrunA17_Chr1g0213721 59.144 257 92 6 43 290 6 258 1.34e-99 292
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0022210 AT3G12130.1 51.495 301 81 9 1 290 1 247 3.82e-82 248
Msa0022210 AT5G06770.6 51.402 214 88 7 87 290 10 217 1.96e-58 186
Msa0022210 AT5G06770.6 71.698 53 15 0 20 72 4 56 7.64e-21 89.0
Msa0022210 AT5G06770.1 51.402 214 88 7 87 290 32 239 3.06e-58 187
Msa0022210 AT5G06770.1 67.949 78 19 2 1 72 1 78 9.25e-29 110
Msa0022210 AT5G06770.3 51.741 201 81 7 100 290 18 212 6.62e-55 177
Msa0022210 AT5G06770.2 51.741 201 81 7 100 290 18 212 6.62e-55 177
Msa0022210 AT5G06770.4 51.741 201 81 7 100 290 18 212 6.62e-55 177
Msa0022210 AT3G12130.2 63.924 158 49 4 139 290 20 175 2.24e-53 172
Msa0022210 AT5G06770.5 59.333 150 56 4 141 290 23 167 3.77e-51 166

Find 127 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCAATGTTTCTAAGATT+TGG 0.218015 1_1:-41381880 None:intergenic
TCTGCTGAAGGCTGCAAATT+TGG 0.233846 1_1:+41381574 Msa0022210:CDS
TATCTCTTCTATCTAGGGTT+AGG 0.257191 1_1:+41378431 Msa0022210:five_prime_UTR
TTGGTCTTGATGTTTCTTCC+AGG 0.287578 1_1:-41382027 None:intergenic
ATGTTTCTTCCAGGTGCGGC+TGG 0.289209 1_1:-41382018 None:intergenic
CCCATTCACCATGGGCAAAA+TGG 0.307326 1_1:-41381606 None:intergenic
GTTCAATGTTTCTAAGATTT+GGG 0.309393 1_1:-41381879 None:intergenic
GATCAGTGTAGAAGCTTCTT+TGG 0.311263 1_1:+41381765 Msa0022210:CDS
GGAGCACCCAGGGTGGATTT+AGG 0.312131 1_1:-41381982 None:intergenic
TCATCCTTACGGTTAGGGTT+AGG 0.315619 1_1:+41378388 Msa0022210:five_prime_UTR
TAAGATTTGGGTCAGATTCA+TGG 0.329032 1_1:-41381867 None:intergenic
CAGGTTTAAGATTCATCATC+TGG 0.330164 1_1:-41381465 None:intergenic
ACTGATCTTGGCAGTGGAAT+TGG 0.339065 1_1:-41381749 None:intergenic
GCTCTCTATCTCTTCTATCT+AGG 0.344285 1_1:+41378425 Msa0022210:five_prime_UTR
GCTAAAGGATCCTGCACATT+TGG 0.348312 1_1:+41382066 Msa0022210:CDS
CACTTCTCACATCATGTTCC+CGG 0.349238 1_1:+41381424 Msa0022210:CDS
TTCAATTCATCCTTACGGTT+AGG 0.350116 1_1:+41378382 Msa0022210:five_prime_UTR
ATCAACCCTCCCTCGTTTGC+GGG 0.354317 1_1:-41378519 None:intergenic
GGTCGAGTTGAGGCTCCTTC+TGG 0.361759 1_1:+41381703 Msa0022210:CDS
TTGAAAATTTGACTCCTGTT+TGG 0.371380 1_1:-41381837 None:intergenic
AGGGTTGATGCTGCTGTTAA+TGG 0.373294 1_1:+41378533 Msa0022210:CDS
TTATTGTTGTTTGTTGCAAA+TGG 0.376679 1_1:+41382320 Msa0022210:three_prime_UTR
CATCCTTACGGTTAGGGTTA+GGG 0.379351 1_1:+41378389 Msa0022210:five_prime_UTR
TCAATTCATCCTTACGGTTA+GGG 0.382082 1_1:+41378383 Msa0022210:five_prime_UTR
TCTTTGGCTGGAGCTATCAT+TGG 0.389153 1_1:+41381781 Msa0022210:CDS
ATCTCTTCTATCTAGGGTTA+GGG 0.390884 1_1:+41378432 Msa0022210:five_prime_UTR
GTTGAGGCTCCTTCTGGTCT+AGG 0.393390 1_1:+41381709 Msa0022210:CDS
AAAACAACTAAATTTAAGAT+TGG 0.400191 1_1:+41378231 Msa0022210:five_prime_UTR
TCCACCCTGGGTGCTCCTGC+TGG 0.401990 1_1:+41381988 Msa0022210:CDS
AGCATTGCTGGCTGTCCATT+TGG 0.402746 1_1:+41381391 Msa0022210:intron
TGAATTGAACGGAGGAAGAT+GGG 0.406078 1_1:-41378368 None:intergenic
GAACGGAGGAAGATGGGGTT+TGG 0.413087 1_1:-41378362 None:intergenic
CTCCGTTCAATTCATCCTTA+CGG 0.421055 1_1:+41378377 Msa0022210:five_prime_UTR
GGTGGGGCGGCAACATTTCT+AGG 0.421558 1_1:-41381496 None:intergenic
GGTCTAGGCGGTACTAGCTT+TGG 0.431440 1_1:+41381724 Msa0022210:CDS
AGAAGCTTCTACACTGATCT+TGG 0.443492 1_1:-41381761 None:intergenic
TATTGTTGTTTGTTGCAAAT+GGG 0.444298 1_1:+41382321 Msa0022210:three_prime_UTR
AGCAAAATTCTCACACAGCT+TGG 0.448378 1_1:-41382046 None:intergenic
GCCGCTGAATTGCGAAAGAT+AGG 0.451271 1_1:+41382114 Msa0022210:CDS
GGTGGTGGCCCAGCCGCACC+TGG 0.454343 1_1:+41382009 Msa0022210:CDS
CTGGGTGCTCCTGCTGGTGG+TGG 0.456820 1_1:+41381994 Msa0022210:CDS
GCAACAGAAATGGACTCAAC+TGG 0.458170 1_1:+41379573 Msa0022210:intron
CATCAACCCTCCCTCGTTTG+CGG 0.460993 1_1:-41378520 None:intergenic
ATGAATTGAACGGAGGAAGA+TGG 0.465169 1_1:-41378369 None:intergenic
CTTAGAAACATTGAACTTGA+GGG 0.465557 1_1:+41381886 Msa0022210:CDS
GGCATACGACCAACATTTGT+AGG 0.466912 1_1:-41381679 None:intergenic
ACAAATGTTGGTCGTATGCC+TGG 0.469504 1_1:+41381682 Msa0022210:CDS
GCGGCTGGGCCACCACCAGC+AGG 0.473223 1_1:-41382003 None:intergenic
TATTATTAATCTTATTGTTG+TGG 0.473354 1_1:+41382220 Msa0022210:three_prime_UTR
ATCTAAAATTGACCTTGGTC+AGG 0.474610 1_1:+41382138 Msa0022210:exon
CTCTCTATCTCTTCTATCTA+GGG 0.474884 1_1:+41378426 Msa0022210:five_prime_UTR
TTCGCAATTCAGCGGCTCCA+TGG 0.475467 1_1:-41382107 None:intergenic
AGTGTAGAAGCTTCTTTGGC+TGG 0.476113 1_1:+41381769 Msa0022210:CDS
CCAACATTTGTAGGTGCCAT+TGG 0.476227 1_1:-41381670 None:intergenic
ATTGTGAAAGCCATATATAA+AGG 0.476641 1_1:-41382371 None:intergenic
AAGCAGATATGTCGCCAAAC+AGG 0.477279 1_1:+41381823 Msa0022210:CDS
TGTTTCTTCCAGGTGCGGCT+GGG 0.483249 1_1:-41382017 None:intergenic
TGCCCCACCTAAATCCACCC+TGG 0.484995 1_1:+41381975 Msa0022210:CDS
TCATCAACTGATGGAGCAAA+AGG 0.487156 1_1:-41381640 None:intergenic
AAGTGACAACCCTCACCAAA+TGG 0.487932 1_1:-41381406 None:intergenic
TCGCAATTCAGCGGCTCCAT+GGG 0.491844 1_1:-41382106 None:intergenic
GCCCCACCTAAATCCACCCT+GGG 0.494162 1_1:+41381976 Msa0022210:CDS
TGCTGGCTGTCCATTTGGTG+AGG 0.513418 1_1:+41381396 Msa0022210:CDS
GGCTGGAGCTATCATTGGAA+AGG 0.517932 1_1:+41381786 Msa0022210:CDS
CCATTGTTAGAGACTGGTGG+TGG 0.518004 1_1:-41381514 None:intergenic
ACATTTCTAGGAGGTGCAGC+AGG 0.522238 1_1:-41381484 None:intergenic
GCTGGCTGTCCATTTGGTGA+GGG 0.526668 1_1:+41381397 Msa0022210:CDS
TCTTAGAAACATTGAACTTG+AGG 0.528176 1_1:+41381885 Msa0022210:CDS
ACATCTTTCTCCAAATGTGC+AGG 0.531941 1_1:-41382076 None:intergenic
ACCCTGGGTGCTCCTGCTGG+TGG 0.535033 1_1:+41381991 Msa0022210:CDS
GCTGGAGCTATCATTGGAAA+GGG 0.536163 1_1:+41381787 Msa0022210:CDS
CACCCAGGGTGGATTTAGGT+GGG 0.536478 1_1:-41381978 None:intergenic
ACCGAGTTCCCATTCACCAT+GGG 0.537718 1_1:-41381614 None:intergenic
GGCAACGGCATTATAACCAC+CGG 0.537881 1_1:-41381443 None:intergenic
CATCCATTGTAGTAAGAGAA+AGG 0.538183 1_1:-41378496 None:intergenic
ACCACCAGCAGGAGCACCCA+GGG 0.538705 1_1:-41381992 None:intergenic
GCACCCAGGGTGGATTTAGG+TGG 0.545220 1_1:-41381979 None:intergenic
GCCCATGGTGAATGGGAACT+CGG 0.546163 1_1:+41381613 Msa0022210:CDS
AACAAGTTTAATTCTGCTGA+AGG 0.547801 1_1:+41381562 Msa0022210:CDS
AACAATAGTAGTAATAGCCC+TGG 0.548540 1_1:-41382185 None:intergenic
TCCTATCTTTCGCAATTCAG+CGG 0.550243 1_1:-41382115 None:intergenic
GCAGAACCATTGTTAGAGAC+TGG 0.559543 1_1:-41381520 None:intergenic
CTAGTACCGCCTAGACCAGA+AGG 0.560068 1_1:-41381718 None:intergenic
ACTCCTTTCTCTTACTACAA+TGG 0.561512 1_1:+41378493 Msa0022210:exon
TGGATGCCCGCAAACGAGGG+AGG 0.563890 1_1:+41378513 Msa0022210:CDS
TAGGAATCTAAAATTGACCT+TGG 0.566148 1_1:+41382133 Msa0022210:exon
AAGATTCATCATCTGGGCAA+CGG 0.568550 1_1:-41381458 None:intergenic
GGACGGTGATCATCAACTGA+TGG 0.568940 1_1:-41381649 None:intergenic
CCAATGGCACCTACAAATGT+TGG 0.569357 1_1:+41381670 Msa0022210:CDS
TTCTACACTGATCTTGGCAG+TGG 0.569888 1_1:-41381755 None:intergenic
GATAGAAGAGAAGAGAAGAA+AGG 0.570911 1_1:-41378316 None:intergenic
GAATTGAACGGAGGAAGATG+GGG 0.573635 1_1:-41378367 None:intergenic
CATTTGTAGGTGCCATTGGA+CGG 0.575412 1_1:-41381666 None:intergenic
GAAGAGATAGAGAGCTTGAG+AGG 0.581420 1_1:-41378417 None:intergenic
CACCACCAGCAGGAGCACCC+AGG 0.583302 1_1:-41381993 None:intergenic
CAATGGATGCCCGCAAACGA+GGG 0.583791 1_1:+41378510 Msa0022210:exon
GAAAGATGTCACTTTGCCCA+TGG 0.584192 1_1:+41382090 Msa0022210:CDS
CTTGATGTTTCTTCCAGGTG+CGG 0.585145 1_1:-41382022 None:intergenic
GAAAGAGATGAGAGAAGCGA+AGG 0.588541 1_1:-41378340 None:intergenic
ACAATGGATGCCCGCAAACG+AGG 0.590226 1_1:+41378509 Msa0022210:exon
GAAATGGACTCAACTGGTGT+AGG 0.590424 1_1:+41379579 Msa0022210:intron
AGGTTTAAGATTCATCATCT+GGG 0.591191 1_1:-41381464 None:intergenic
AATTAAACTTGTTACATATG+CGG 0.591258 1_1:-41381552 None:intergenic
CCACCACCAGTCTCTAACAA+TGG 0.591961 1_1:+41381514 Msa0022210:CDS
TACCGAGTTCCCATTCACCA+TGG 0.592664 1_1:-41381615 None:intergenic
TGTGGATTGCTACTTAGTAG+TGG 0.595136 1_1:+41382238 Msa0022210:three_prime_UTR
GGATGCCCGCAAACGAGGGA+GGG 0.598945 1_1:+41378514 Msa0022210:CDS
AGTTGATGATCACCGTCCAA+TGG 0.605823 1_1:+41381654 Msa0022210:CDS
AAACCCTAACCCTAACCGTA+AGG 0.606064 1_1:-41378392 None:intergenic
ATTGTTAGAGACTGGTGGTG+GGG 0.606388 1_1:-41381512 None:intergenic
GAAGGAGCCTCAACTCGACC+AGG 0.607588 1_1:-41381700 None:intergenic
TCGTATGCCTGGTCGAGTTG+AGG 0.614018 1_1:+41381693 Msa0022210:CDS
GGAGCTATCATTGGAAAGGG+TGG 0.621933 1_1:+41381790 Msa0022210:CDS
GTTAGAGACTGGTGGTGGGG+CGG 0.623695 1_1:-41381509 None:intergenic
AACCGTAAGGATGAATTGAA+CGG 0.634433 1_1:-41378379 None:intergenic
CATTGTTAGAGACTGGTGGT+GGG 0.635968 1_1:-41381513 None:intergenic
ACCCAGGGTGGATTTAGGTG+GGG 0.640360 1_1:-41381977 None:intergenic
AATTGCACAAGCAAGTAACA+TGG 0.648235 1_1:+41381921 Msa0022210:CDS
TCCGTCAAGAAAACCAAACA+AGG 0.648477 1_1:+41378557 Msa0022210:CDS
GCAACGGCATTATAACCACC+GGG 0.654418 1_1:-41381442 None:intergenic
TTCTCACATCATGTTCCCGG+TGG 0.667160 1_1:+41381427 Msa0022210:CDS
GGGGCGGCAACATTTCTAGG+AGG 0.676956 1_1:-41381493 None:intergenic
ACCAGCAGGAGCACCCAGGG+TGG 0.680551 1_1:-41381989 None:intergenic
GAACCATTGTTAGAGACTGG+TGG 0.695821 1_1:-41381517 None:intergenic
GAGGCTCCTTCTGGTCTAGG+CGG 0.707296 1_1:+41381712 Msa0022210:CDS
CGTAAGGATGAATTGAACGG+AGG 0.709166 1_1:-41378376 None:intergenic
CAAAGCAGCAAAAGACACTG+AGG 0.763743 1_1:-41378277 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTAAATTTAGTTGT+TGG + chr1_1:41378734-41378753 Msa0022210:intron 10.0%
!!! AAATTGCAATTTTATTTATA+TGG - chr1_1:41378813-41378832 None:intergenic 10.0%
!!! AAAACAACTAAATTTAAGAT+TGG + chr1_1:41378231-41378250 Msa0022210:five_prime_UTR 15.0%
!! AATAAATAAAAAGTTAGAAG+AGG - chr1_1:41378594-41378613 None:intergenic 15.0%
!! TACTACATTTAATAATTTAG+AGG + chr1_1:41379519-41379538 Msa0022210:intron 15.0%
!! TTCAAAATATTTGTTTAGAT+AGG - chr1_1:41379651-41379670 None:intergenic 15.0%
!! CTATTTACAAGATAATAAAA+TGG + chr1_1:41379994-41380013 Msa0022210:intron 15.0%
!!! AGATTTTAAAAATTACAATC+TGG - chr1_1:41380201-41380220 None:intergenic 15.0%
!!! TTTTCATAACAATAATACTT+TGG + chr1_1:41381320-41381339 Msa0022210:intron 15.0%
!! TATTATTAATCTTATTGTTG+TGG + chr1_1:41382220-41382239 Msa0022210:three_prime_UTR 15.0%
!!! TTAAACAGTTTTTTAAGTTC+AGG - chr1_1:41379128-41379147 None:intergenic 20.0%
!!! TTCTTTTAGATAAAGGTAAT+TGG - chr1_1:41379299-41379318 None:intergenic 20.0%
!!! TTTAGGTTTCTTTTAGATAA+AGG - chr1_1:41379306-41379325 None:intergenic 20.0%
!! ATCAAATTGTAACAGAATAA+TGG + chr1_1:41379774-41379793 Msa0022210:intron 20.0%
!! ACAGAATAATGGTTTATTAA+TGG + chr1_1:41379785-41379804 Msa0022210:intron 20.0%
!! TTACAAGATAATAAAATGGT+TGG + chr1_1:41379998-41380017 Msa0022210:intron 20.0%
!! GTTTAGTCAATTAAGAAATA+CGG + chr1_1:41380373-41380392 Msa0022210:intron 20.0%
!! TTTAATTGATGTAACATAAC+AGG - chr1_1:41380737-41380756 None:intergenic 20.0%
!! ATATTATAGGCAATGATATA+TGG + chr1_1:41380879-41380898 Msa0022210:intron 20.0%
!!! TTATTTTGATAGTAGTTAAC+AGG + chr1_1:41381271-41381290 Msa0022210:intron 20.0%
!!! AATTAAACTTGTTACATATG+CGG - chr1_1:41381555-41381574 None:intergenic 20.0%
!!! TACTACTTTTCCTTTATATA+TGG + chr1_1:41382361-41382380 Msa0022210:three_prime_UTR 20.0%
!!! TTTCACTTTTTCTTCTTCTT+TGG + chr1_1:41378460-41378479 Msa0022210:five_prime_UTR 25.0%
! TTGTTGGATTTATGTTTGTT+TGG + chr1_1:41378750-41378769 Msa0022210:intron 25.0%
! TTTAGTGTAATTACAAGTGT+CGG + chr1_1:41379002-41379021 Msa0022210:intron 25.0%
!!! CAATTACGGTTTAGAATTTT+GGG - chr1_1:41379329-41379348 None:intergenic 25.0%
!! TTAATGTTTTGCAACAGAAA+TGG + chr1_1:41379563-41379582 Msa0022210:intron 25.0%
! TAATGGTTTATTAATGGAGT+TGG + chr1_1:41379791-41379810 Msa0022210:intron 25.0%
! TTTATTAATGGAGTTGGAAA+AGG + chr1_1:41379797-41379816 Msa0022210:intron 25.0%
! AGCAAGATTTACAGTAATTA+AGG - chr1_1:41379904-41379923 None:intergenic 25.0%
! GCTGATAAGTCATTATTAAA+TGG - chr1_1:41379929-41379948 None:intergenic 25.0%
! ACTACTTAGTTGAAGTAATA+GGG - chr1_1:41380105-41380124 None:intergenic 25.0%
! AACTACTTAGTTGAAGTAAT+AGG - chr1_1:41380106-41380125 None:intergenic 25.0%
! TACAAAATTTACAGTCGTAA+AGG - chr1_1:41380298-41380317 None:intergenic 25.0%
! AATTAAGAAATACGGAATTC+CGG + chr1_1:41380381-41380400 Msa0022210:intron 25.0%
!!! TTCTTTCCTTTAGTTTTTCT+TGG + chr1_1:41380552-41380571 Msa0022210:intron 25.0%
!!! TCAACCATCTTTTTTTCAAT+AGG + chr1_1:41380645-41380664 Msa0022210:intron 25.0%
! ATGTTAGTATTAAAGAGAGT+TGG - chr1_1:41380678-41380697 None:intergenic 25.0%
!!! AAAATTGGTTTTCTTTCAGA+GGG - chr1_1:41380988-41381007 None:intergenic 25.0%
!!! TAAAATTGGTTTTCTTTCAG+AGG - chr1_1:41380989-41381008 None:intergenic 25.0%
! CATATCAATGGCTATAAAAT+TGG - chr1_1:41381003-41381022 None:intergenic 25.0%
!! ATTTTATAGCCATTGATATG+TGG + chr1_1:41381003-41381022 Msa0022210:intron 25.0%
!! GAATGTTATTTGTTAGCTTA+TGG - chr1_1:41381029-41381048 None:intergenic 25.0%
! ACATTCCTATATTCTTCTTA+AGG + chr1_1:41381225-41381244 Msa0022210:intron 25.0%
! TAGTTAACAGGAAATGAAAA+GGG + chr1_1:41381283-41381302 Msa0022210:intron 25.0%
!!! GTTCAATGTTTCTAAGATTT+GGG - chr1_1:41381882-41381901 None:intergenic 25.0%
!!! AGTTCAATGTTTCTAAGATT+TGG - chr1_1:41381883-41381902 None:intergenic 25.0%
!!! TTATTGTTGTTTGTTGCAAA+TGG + chr1_1:41382320-41382339 Msa0022210:three_prime_UTR 25.0%
!!! TATTGTTGTTTGTTGCAAAT+GGG + chr1_1:41382321-41382340 Msa0022210:three_prime_UTR 25.0%
TCTGTGTTCTTGAATTTGAA+AGG + chr1_1:41378632-41378651 Msa0022210:intron 30.0%
! AGTTCAACTAAAGAAGCATA+TGG - chr1_1:41378912-41378931 None:intergenic 30.0%
! TGTATATGGTGTTTAAAACG+AGG - chr1_1:41379265-41379284 None:intergenic 30.0%
!! TGGCTTTGATTTGATGTATA+TGG - chr1_1:41379279-41379298 None:intergenic 30.0%
!! GCAATTACGGTTTAGAATTT+TGG - chr1_1:41379330-41379349 None:intergenic 30.0%
! TTTAGGATGATTGCTTCAAT+TGG + chr1_1:41379381-41379400 Msa0022210:intron 30.0%
AGATTAGAACCTGAAAAACT+TGG - chr1_1:41379625-41379644 None:intergenic 30.0%
ATCTAATTCTGCATCTTAAC+TGG + chr1_1:41379709-41379728 Msa0022210:intron 30.0%
TCTAATTCTGCATCTTAACT+GGG + chr1_1:41379710-41379729 Msa0022210:intron 30.0%
! GGAAAAGGATAATAATTTGC+AGG + chr1_1:41379812-41379831 Msa0022210:intron 30.0%
TAAATAGCTTACCAATTGGA+AGG - chr1_1:41379981-41380000 None:intergenic 30.0%
CTTGTAAATAGCTTACCAAT+TGG - chr1_1:41379985-41380004 None:intergenic 30.0%
GATAATAAAATGGTTGGATC+AGG + chr1_1:41380004-41380023 Msa0022210:intron 30.0%
TACTTAGTTGAAGTAATAGG+GGG - chr1_1:41380103-41380122 None:intergenic 30.0%
CTACTTAGTTGAAGTAATAG+GGG - chr1_1:41380104-41380123 None:intergenic 30.0%
!! AAGTAGTTCTATCAAGCTTT+TGG + chr1_1:41380118-41380137 Msa0022210:intron 30.0%
! AGCTTTTGGTAAAACATTAG+AGG + chr1_1:41380132-41380151 Msa0022210:intron 30.0%
!! GTGTTTTGTTCACATAAATC+TGG + chr1_1:41380442-41380461 Msa0022210:intron 30.0%
GAAAAACTAAAGGAAAGAAC+AGG - chr1_1:41380551-41380570 None:intergenic 30.0%
AGCACCTATTGAAAAAAAGA+TGG - chr1_1:41380652-41380671 None:intergenic 30.0%
TTCATCAACTAAAATCCCAT+TGG + chr1_1:41380822-41380841 Msa0022210:intron 30.0%
CATCTCTTGTAGCATATTAT+AGG + chr1_1:41380866-41380885 Msa0022210:intron 30.0%
TTATAAGCCAACATAGAGTT+GGG + chr1_1:41381085-41381104 Msa0022210:intron 30.0%
TTCCTATATTCTTCTTAAGG+TGG + chr1_1:41381228-41381247 Msa0022210:intron 30.0%
TTCCACCTTAAGAAGAATAT+AGG - chr1_1:41381233-41381252 None:intergenic 30.0%
GTAGTTAACAGGAAATGAAA+AGG + chr1_1:41381282-41381301 Msa0022210:intron 30.0%
AGTTAACAGGAAATGAAAAG+GGG + chr1_1:41381284-41381303 Msa0022210:intron 30.0%
TGCAAAACAAGAAAACATCA+TGG - chr1_1:41381372-41381391 None:intergenic 30.0%
! AGGTTTAAGATTCATCATCT+GGG - chr1_1:41381467-41381486 None:intergenic 30.0%
AACAAGTTTAATTCTGCTGA+AGG + chr1_1:41381562-41381581 Msa0022210:CDS 30.0%
TTGAAAATTTGACTCCTGTT+TGG - chr1_1:41381840-41381859 None:intergenic 30.0%
TCTTAGAAACATTGAACTTG+AGG + chr1_1:41381885-41381904 Msa0022210:CDS 30.0%
CTTAGAAACATTGAACTTGA+GGG + chr1_1:41381886-41381905 Msa0022210:CDS 30.0%
! TAGGAATCTAAAATTGACCT+TGG + chr1_1:41382133-41382152 Msa0022210:exon 30.0%
! TTTTTCTTCTTTTGTTAGCC+AGG + chr1_1:41382167-41382186 Msa0022210:three_prime_UTR 30.0%
! TTTTCTTCTTTTGTTAGCCA+GGG + chr1_1:41382168-41382187 Msa0022210:three_prime_UTR 30.0%
!!! GCTGCTTTGTGTTTTTTCTT+TGG + chr1_1:41378291-41378310 Msa0022210:five_prime_UTR 35.0%
GATAGAAGAGAAGAGAAGAA+AGG - chr1_1:41378319-41378338 None:intergenic 35.0%
AACCGTAAGGATGAATTGAA+CGG - chr1_1:41378382-41378401 None:intergenic 35.0%
TTCAATTCATCCTTACGGTT+AGG + chr1_1:41378382-41378401 Msa0022210:five_prime_UTR 35.0%
TCAATTCATCCTTACGGTTA+GGG + chr1_1:41378383-41378402 Msa0022210:five_prime_UTR 35.0%
CTCTCTATCTCTTCTATCTA+GGG + chr1_1:41378426-41378445 Msa0022210:five_prime_UTR 35.0%
! TATCTCTTCTATCTAGGGTT+AGG + chr1_1:41378431-41378450 Msa0022210:five_prime_UTR 35.0%
! ATCTCTTCTATCTAGGGTTA+GGG + chr1_1:41378432-41378451 Msa0022210:five_prime_UTR 35.0%
ACTCCTTTCTCTTACTACAA+TGG + chr1_1:41378493-41378512 Msa0022210:exon 35.0%
CATCCATTGTAGTAAGAGAA+AGG - chr1_1:41378499-41378518 None:intergenic 35.0%
!!! ACCTTGTTTGGTTTTCTTGA+CGG - chr1_1:41378561-41378580 None:intergenic 35.0%
GGTGAAAAAGAAACCTTGTT+TGG - chr1_1:41378573-41378592 None:intergenic 35.0%
TTATTGCTCTATGCTTGTCA+TGG + chr1_1:41378872-41378891 Msa0022210:intron 35.0%
TGAACTATGAAGCACAGATA+CGG + chr1_1:41378926-41378945 Msa0022210:intron 35.0%
!!! CGGTTTAGAATTTTGGGTTT+AGG - chr1_1:41379323-41379342 None:intergenic 35.0%
ACACAACTCTGTTGCAATTA+CGG - chr1_1:41379343-41379362 None:intergenic 35.0%
!! TCAGAGAGTGTTCAAAGTTT+AGG + chr1_1:41379364-41379383 Msa0022210:intron 35.0%
CTATATCAACCTTCAACTCA+GGG - chr1_1:41379434-41379453 None:intergenic 35.0%
ACTATATCAACCTTCAACTC+AGG - chr1_1:41379435-41379454 None:intergenic 35.0%
AACCTGAAAAACTTGGTACA+AGG - chr1_1:41379618-41379637 None:intergenic 35.0%
! GGGTATTCTAAGCTTTATAC+AGG + chr1_1:41379730-41379749 Msa0022210:intron 35.0%
TTTAGTGTTCCCATTGTCAT+GGG - chr1_1:41379842-41379861 None:intergenic 35.0%
ATTTAGTGTTCCCATTGTCA+TGG - chr1_1:41379843-41379862 None:intergenic 35.0%
TTAGACACAGACGCATAATT+TGG - chr1_1:41380038-41380057 None:intergenic 35.0%
GCATAAACAAAGTTCTCTCT+TGG - chr1_1:41380074-41380093 None:intergenic 35.0%
AACACAGAACAAGCAATCAA+AGG - chr1_1:41380321-41380340 None:intergenic 35.0%
CCTAATATTGAACCTTCTAC+CGG - chr1_1:41380403-41380422 None:intergenic 35.0%
GAACAACTAAAACACTGCAA+TGG - chr1_1:41380488-41380507 None:intergenic 35.0%
GGAAGACCAAGAAAAACTAA+AGG - chr1_1:41380561-41380580 None:intergenic 35.0%
! AATCTAGACTTAGCTGGTTT+GGG - chr1_1:41380626-41380645 None:intergenic 35.0%
AGATGAGAAAAACCAATGGT+AGG - chr1_1:41380851-41380870 None:intergenic 35.0%
CAAGAGATGAGAAAAACCAA+TGG - chr1_1:41380855-41380874 None:intergenic 35.0%
ATAGGCAATGATATATGGTG+TGG + chr1_1:41380884-41380903 Msa0022210:intron 35.0%
AGTGTGTGTTATCTAACCTT+TGG + chr1_1:41380931-41380950 Msa0022210:intron 35.0%
! AACCTTTGGTGGATATGATA+TGG + chr1_1:41380945-41380964 Msa0022210:intron 35.0%
AACCATATCATATCCACCAA+AGG - chr1_1:41380950-41380969 None:intergenic 35.0%
CGAATCAGAACAATGACTAT+CGG - chr1_1:41381051-41381070 None:intergenic 35.0%
GTTATAAGCCAACATAGAGT+TGG + chr1_1:41381084-41381103 Msa0022210:intron 35.0%
! CAGGTTTAAGATTCATCATC+TGG - chr1_1:41381468-41381487 None:intergenic 35.0%
TAAGATTTGGGTCAGATTCA+TGG - chr1_1:41381870-41381889 None:intergenic 35.0%
AATTGCACAAGCAAGTAACA+TGG + chr1_1:41381921-41381940 Msa0022210:CDS 35.0%
! CTGTGTGAGAATTTTGCTAA+AGG + chr1_1:41382051-41382070 Msa0022210:CDS 35.0%
! ATCTAAAATTGACCTTGGTC+AGG + chr1_1:41382138-41382157 Msa0022210:exon 35.0%
AACAATAGTAGTAATAGCCC+TGG - chr1_1:41382188-41382207 None:intergenic 35.0%
TGAATTGAACGGAGGAAGAT+GGG - chr1_1:41378371-41378390 None:intergenic 40.0%
ATGAATTGAACGGAGGAAGA+TGG - chr1_1:41378372-41378391 None:intergenic 40.0%
CTCCGTTCAATTCATCCTTA+CGG + chr1_1:41378377-41378396 Msa0022210:five_prime_UTR 40.0%
GCTCTCTATCTCTTCTATCT+AGG + chr1_1:41378425-41378444 Msa0022210:five_prime_UTR 40.0%
TCCGTCAAGAAAACCAAACA+AGG + chr1_1:41378557-41378576 Msa0022210:CDS 40.0%
TTGCTTCAACCTATGAAGCA+TGG - chr1_1:41379075-41379094 None:intergenic 40.0%
TTCGACAACAGAGTTTCAGA+GGG - chr1_1:41379157-41379176 None:intergenic 40.0%
!! TCACTGGAATTTGCTATCGA+TGG + chr1_1:41379181-41379200 Msa0022210:intron 40.0%
! ATTGCTTCAATTGGAAGCAC+AGG + chr1_1:41379390-41379409 Msa0022210:intron 40.0%
!! AGCCTTGTACCAAGTTTTTC+AGG + chr1_1:41379613-41379632 Msa0022210:CDS 40.0%
TAGCTTACCAATTGGAAGGT+GGG - chr1_1:41379977-41379996 None:intergenic 40.0%
ATAGCTTACCAATTGGAAGG+TGG - chr1_1:41379978-41379997 None:intergenic 40.0%
TGCTTGTTCTGTGTTTACGT+AGG + chr1_1:41380326-41380345 Msa0022210:intron 40.0%
AAATACGGAATTCCGGTAGA+AGG + chr1_1:41380388-41380407 Msa0022210:intron 40.0%
CCGGTAGAAGGTTCAATATT+AGG + chr1_1:41380400-41380419 Msa0022210:intron 40.0%
GAATCTAGACTTAGCTGGTT+TGG - chr1_1:41380627-41380646 None:intergenic 40.0%
TGGTTGAATCTAGACTTAGC+TGG - chr1_1:41380632-41380651 None:intergenic 40.0%
AGACTTCTGCATCATGTACA+AGG + chr1_1:41380756-41380775 Msa0022210:intron 40.0%
GACTTCTGCATCATGTACAA+GGG + chr1_1:41380757-41380776 Msa0022210:intron 40.0%
GATGAAACCAGATCAACTCA+TGG - chr1_1:41380808-41380827 None:intergenic 40.0%
ACCAATGGTAGGTTTCCAAT+GGG - chr1_1:41380840-41380859 None:intergenic 40.0%
AACCAATGGTAGGTTTCCAA+TGG - chr1_1:41380841-41380860 None:intergenic 40.0%
GTGTGTTATCTAACCTTTGG+TGG + chr1_1:41380934-41380953 Msa0022210:intron 40.0%
!! TTGGTTTTCTTTCAGAGGGA+GGG - chr1_1:41380984-41381003 None:intergenic 40.0%
!!! ATTGGTTTTCTTTCAGAGGG+AGG - chr1_1:41380985-41381004 None:intergenic 40.0%
AGCTTATGGCCACATATCAA+TGG - chr1_1:41381015-41381034 None:intergenic 40.0%
! TCTGATTCGCATTATCTGAC+TGG + chr1_1:41381062-41381081 Msa0022210:intron 40.0%
!!! TTCTTGTTTTGCAGCATTGC+TGG + chr1_1:41381379-41381398 Msa0022210:intron 40.0%
AAGATTCATCATCTGGGCAA+CGG - chr1_1:41381461-41381480 None:intergenic 40.0%
TCATCAACTGATGGAGCAAA+AGG - chr1_1:41381643-41381662 None:intergenic 40.0%
AGAAGCTTCTACACTGATCT+TGG - chr1_1:41381764-41381783 None:intergenic 40.0%
GATCAGTGTAGAAGCTTCTT+TGG + chr1_1:41381765-41381784 Msa0022210:CDS 40.0%
!! TTGGTCTTGATGTTTCTTCC+AGG - chr1_1:41382030-41382049 None:intergenic 40.0%
AGCAAAATTCTCACACAGCT+TGG - chr1_1:41382049-41382068 None:intergenic 40.0%
ACATCTTTCTCCAAATGTGC+AGG - chr1_1:41382079-41382098 None:intergenic 40.0%
TCCTATCTTTCGCAATTCAG+CGG - chr1_1:41382118-41382137 None:intergenic 40.0%
! GAAAAAAGTACACCTGACCA+AGG - chr1_1:41382153-41382172 None:intergenic 40.0%
! TGTGGATTGCTACTTAGTAG+TGG + chr1_1:41382238-41382257 Msa0022210:three_prime_UTR 40.0%
CAAAGCAGCAAAAGACACTG+AGG - chr1_1:41378280-41378299 None:intergenic 45.0%
GAAAGAGATGAGAGAAGCGA+AGG - chr1_1:41378343-41378362 None:intergenic 45.0%
GAATTGAACGGAGGAAGATG+GGG - chr1_1:41378370-41378389 None:intergenic 45.0%
CGTAAGGATGAATTGAACGG+AGG - chr1_1:41378379-41378398 None:intergenic 45.0%
TCATCCTTACGGTTAGGGTT+AGG + chr1_1:41378388-41378407 Msa0022210:five_prime_UTR 45.0%
CATCCTTACGGTTAGGGTTA+GGG + chr1_1:41378389-41378408 Msa0022210:five_prime_UTR 45.0%
AAACCCTAACCCTAACCGTA+AGG - chr1_1:41378395-41378414 None:intergenic 45.0%
GAAGAGATAGAGAGCTTGAG+AGG - chr1_1:41378420-41378439 None:intergenic 45.0%
!! AGGGTTGATGCTGCTGTTAA+TGG + chr1_1:41378533-41378552 Msa0022210:CDS 45.0%
TATGAAGCATGGACACTCCT+CGG - chr1_1:41379064-41379083 None:intergenic 45.0%
CTTCGACAACAGAGTTTCAG+AGG - chr1_1:41379158-41379177 None:intergenic 45.0%
TCTGTTGTCGAAGTAGTCAC+TGG + chr1_1:41379165-41379184 Msa0022210:intron 45.0%
! TTCACATGACCCTGAGTTGA+AGG + chr1_1:41379422-41379441 Msa0022210:intron 45.0%
! GCAACAGAAATGGACTCAAC+TGG + chr1_1:41379573-41379592 Msa0022210:intron 45.0%
! GAAATGGACTCAACTGGTGT+AGG + chr1_1:41379579-41379598 Msa0022210:intron 45.0%
TGATGAACCCACCTTCCAAT+TGG + chr1_1:41379967-41379986 Msa0022210:intron 45.0%
CCAATGCTACAAAGCTGATC+AGG - chr1_1:41380257-41380276 None:intergenic 45.0%
! CCTGATCAGCTTTGTAGCAT+TGG + chr1_1:41380254-41380273 Msa0022210:intron 45.0%
! AGGAGAGTACAACAGTTGGA+GGG - chr1_1:41380594-41380613 None:intergenic 45.0%
! AGTGAGGAGAGTACAACAGT+TGG - chr1_1:41380598-41380617 None:intergenic 45.0%
CAGGTGATTAGACTTGACTG+TGG - chr1_1:41380718-41380737 None:intergenic 45.0%
!! ACAGACACCATGAGTTGATC+TGG + chr1_1:41380798-41380817 Msa0022210:intron 45.0%
TCCCATTGGAAACCTACCAT+TGG + chr1_1:41380836-41380855 Msa0022210:intron 45.0%
CAACATAGAGTTGGGCACTT+GGG + chr1_1:41381093-41381112 Msa0022210:intron 45.0%
! GATGCAGTTGCGGATTAACT+TGG + chr1_1:41381156-41381175 Msa0022210:intron 45.0%
AAGTGACAACCCTCACCAAA+TGG - chr1_1:41381409-41381428 None:intergenic 45.0%
CACTTCTCACATCATGTTCC+CGG + chr1_1:41381424-41381443 Msa0022210:CDS 45.0%
! ATTGTTAGAGACTGGTGGTG+GGG - chr1_1:41381515-41381534 None:intergenic 45.0%
CATTGTTAGAGACTGGTGGT+GGG - chr1_1:41381516-41381535 None:intergenic 45.0%
GAACCATTGTTAGAGACTGG+TGG - chr1_1:41381520-41381539 None:intergenic 45.0%
GCAGAACCATTGTTAGAGAC+TGG - chr1_1:41381523-41381542 None:intergenic 45.0%
TCTGCTGAAGGCTGCAAATT+TGG + chr1_1:41381574-41381593 Msa0022210:CDS 45.0%
! CCATTTTGCCCATGGTGAAT+GGG + chr1_1:41381606-41381625 Msa0022210:CDS 45.0%
!! AGTTGATGATCACCGTCCAA+TGG + chr1_1:41381654-41381673 Msa0022210:CDS 45.0%
!! CATTTGTAGGTGCCATTGGA+CGG - chr1_1:41381669-41381688 None:intergenic 45.0%
! CCAACATTTGTAGGTGCCAT+TGG - chr1_1:41381673-41381692 None:intergenic 45.0%
CCAATGGCACCTACAAATGT+TGG + chr1_1:41381670-41381689 Msa0022210:CDS 45.0%
GGCATACGACCAACATTTGT+AGG - chr1_1:41381682-41381701 None:intergenic 45.0%
ACAAATGTTGGTCGTATGCC+TGG + chr1_1:41381682-41381701 Msa0022210:CDS 45.0%
ACTGATCTTGGCAGTGGAAT+TGG - chr1_1:41381752-41381771 None:intergenic 45.0%
TTCTACACTGATCTTGGCAG+TGG - chr1_1:41381758-41381777 None:intergenic 45.0%
AGTGTAGAAGCTTCTTTGGC+TGG + chr1_1:41381769-41381788 Msa0022210:CDS 45.0%
TCTTTGGCTGGAGCTATCAT+TGG + chr1_1:41381781-41381800 Msa0022210:CDS 45.0%
GCTGGAGCTATCATTGGAAA+GGG + chr1_1:41381787-41381806 Msa0022210:CDS 45.0%
AAGCAGATATGTCGCCAAAC+AGG + chr1_1:41381823-41381842 Msa0022210:CDS 45.0%
CTTGATGTTTCTTCCAGGTG+CGG - chr1_1:41382025-41382044 None:intergenic 45.0%
GCTAAAGGATCCTGCACATT+TGG + chr1_1:41382066-41382085 Msa0022210:CDS 45.0%
!! GAAAGATGTCACTTTGCCCA+TGG + chr1_1:41382090-41382109 Msa0022210:CDS 45.0%
!! GAGGAGTGTCCATGCTTCAT+AGG + chr1_1:41379063-41379082 Msa0022210:intron 50.0%
! GCTTCAATTGGAAGCACAGG+TGG + chr1_1:41379393-41379412 Msa0022210:intron 50.0%
TGCAGGAAGACCCATGACAA+TGG + chr1_1:41379829-41379848 Msa0022210:intron 50.0%
GCAGGAAGACCCATGACAAT+GGG + chr1_1:41379830-41379849 Msa0022210:intron 50.0%
!! AACCATCGCTCTGGAGCAAA+GGG - chr1_1:41380230-41380249 None:intergenic 50.0%
!! ATCTGCTGTTTCCACTGCTC+TGG + chr1_1:41380524-41380543 Msa0022210:intron 50.0%
AAAGAACAGGACCAGAGCAG+TGG - chr1_1:41380538-41380557 None:intergenic 50.0%
GTACAACAGTTGGAGGGAAG+AGG - chr1_1:41380588-41380607 None:intergenic 50.0%
! GAGGAGAGTACAACAGTTGG+AGG - chr1_1:41380595-41380614 None:intergenic 50.0%
!! GCTGGTTTGGGCATATAGTG+AGG - chr1_1:41380614-41380633 None:intergenic 50.0%
CCAAGTGCCCAACTCTATGT+TGG - chr1_1:41381095-41381114 None:intergenic 50.0%
CCAACATAGAGTTGGGCACT+TGG + chr1_1:41381092-41381111 Msa0022210:intron 50.0%
GCTTTGCTCTGATGCAGTTG+CGG + chr1_1:41381146-41381165 Msa0022210:intron 50.0%
! AGCATTGCTGGCTGTCCATT+TGG + chr1_1:41381391-41381410 Msa0022210:intron 50.0%
TTCTCACATCATGTTCCCGG+TGG + chr1_1:41381427-41381446 Msa0022210:CDS 50.0%
GCAACGGCATTATAACCACC+GGG - chr1_1:41381445-41381464 None:intergenic 50.0%
GGCAACGGCATTATAACCAC+CGG - chr1_1:41381446-41381465 None:intergenic 50.0%
! ACATTTCTAGGAGGTGCAGC+AGG - chr1_1:41381487-41381506 None:intergenic 50.0%
CCATTGTTAGAGACTGGTGG+TGG - chr1_1:41381517-41381536 None:intergenic 50.0%
CCACCACCAGTCTCTAACAA+TGG + chr1_1:41381514-41381533 Msa0022210:CDS 50.0%
!!! GACAAGTGCCATTTTGCCCA+TGG + chr1_1:41381598-41381617 Msa0022210:CDS 50.0%
!! GCCATTTTGCCCATGGTGAA+TGG + chr1_1:41381605-41381624 Msa0022210:CDS 50.0%
CCCATTCACCATGGGCAAAA+TGG - chr1_1:41381609-41381628 None:intergenic 50.0%
ACCGAGTTCCCATTCACCAT+GGG - chr1_1:41381617-41381636 None:intergenic 50.0%
TACCGAGTTCCCATTCACCA+TGG - chr1_1:41381618-41381637 None:intergenic 50.0%
GGACGGTGATCATCAACTGA+TGG - chr1_1:41381652-41381671 None:intergenic 50.0%
GGCTGGAGCTATCATTGGAA+AGG + chr1_1:41381786-41381805 Msa0022210:CDS 50.0%
GGAGCTATCATTGGAAAGGG+TGG + chr1_1:41381790-41381809 Msa0022210:CDS 50.0%
GCCGCTGAATTGCGAAAGAT+AGG + chr1_1:41382114-41382133 Msa0022210:CDS 50.0%
GAACGGAGGAAGATGGGGTT+TGG - chr1_1:41378365-41378384 None:intergenic 55.0%
ACAATGGATGCCCGCAAACG+AGG + chr1_1:41378509-41378528 Msa0022210:exon 55.0%
CAATGGATGCCCGCAAACGA+GGG + chr1_1:41378510-41378529 Msa0022210:exon 55.0%
ATCAACCCTCCCTCGTTTGC+GGG - chr1_1:41378522-41378541 None:intergenic 55.0%
CATCAACCCTCCCTCGTTTG+CGG - chr1_1:41378523-41378542 None:intergenic 55.0%
GCACAGATACGGACACGACA+CGG + chr1_1:41378937-41378956 Msa0022210:intron 55.0%
GCATGGACACTCCTCGGATT+AGG - chr1_1:41379058-41379077 None:intergenic 55.0%
!! ACCATCGCTCTGGAGCAAAG+GGG - chr1_1:41380229-41380248 None:intergenic 55.0%
!! CAACCATCGCTCTGGAGCAA+AGG - chr1_1:41380231-41380250 None:intergenic 55.0%
TCAGGATGCAACCATCGCTC+TGG - chr1_1:41380239-41380258 None:intergenic 55.0%
! TGCTGGCTGTCCATTTGGTG+AGG + chr1_1:41381396-41381415 Msa0022210:CDS 55.0%
! GCTGGCTGTCCATTTGGTGA+GGG + chr1_1:41381397-41381416 Msa0022210:CDS 55.0%
GCCCATGGTGAATGGGAACT+CGG + chr1_1:41381613-41381632 Msa0022210:CDS 55.0%
! TCGTATGCCTGGTCGAGTTG+AGG + chr1_1:41381693-41381712 Msa0022210:CDS 55.0%
GTTGAGGCTCCTTCTGGTCT+AGG + chr1_1:41381709-41381728 Msa0022210:CDS 55.0%
CTAGTACCGCCTAGACCAGA+AGG - chr1_1:41381721-41381740 None:intergenic 55.0%
! GGTCTAGGCGGTACTAGCTT+TGG + chr1_1:41381724-41381743 Msa0022210:CDS 55.0%
! ACCCAGGGTGGATTTAGGTG+GGG - chr1_1:41381980-41381999 None:intergenic 55.0%
! CACCCAGGGTGGATTTAGGT+GGG - chr1_1:41381981-41382000 None:intergenic 55.0%
TGTTTCTTCCAGGTGCGGCT+GGG - chr1_1:41382020-41382039 None:intergenic 55.0%
ATGTTTCTTCCAGGTGCGGC+TGG - chr1_1:41382021-41382040 None:intergenic 55.0%
TCGCAATTCAGCGGCTCCAT+GGG - chr1_1:41382109-41382128 None:intergenic 55.0%
TTCGCAATTCAGCGGCTCCA+TGG - chr1_1:41382110-41382129 None:intergenic 55.0%
!! TGTCGGTGTCGCGTCAGTGT+CGG + chr1_1:41379019-41379038 Msa0022210:intron 60.0%
ACCTGGACACGCCTAATCCG+AGG + chr1_1:41379044-41379063 Msa0022210:intron 60.0%
! TCCTCGGATTAGGCGTGTCC+AGG - chr1_1:41379048-41379067 None:intergenic 60.0%
TCCCCTTTGCTCCAGAGCGA+TGG + chr1_1:41380225-41380244 Msa0022210:intron 60.0%
CAGTTGGAGGGAAGAGGCAG+AGG - chr1_1:41380582-41380601 None:intergenic 60.0%
! GGGGCGGCAACATTTCTAGG+AGG - chr1_1:41381496-41381515 None:intergenic 60.0%
GGTGGGGCGGCAACATTTCT+AGG - chr1_1:41381499-41381518 None:intergenic 60.0%
!! GTTAGAGACTGGTGGTGGGG+CGG - chr1_1:41381512-41381531 None:intergenic 60.0%
GAAGGAGCCTCAACTCGACC+AGG - chr1_1:41381703-41381722 None:intergenic 60.0%
!! GGTCGAGTTGAGGCTCCTTC+TGG + chr1_1:41381703-41381722 Msa0022210:CDS 60.0%
GAGGCTCCTTCTGGTCTAGG+CGG + chr1_1:41381712-41381731 Msa0022210:CDS 60.0%
TGCCCCACCTAAATCCACCC+TGG + chr1_1:41381975-41381994 Msa0022210:CDS 60.0%
GCCCCACCTAAATCCACCCT+GGG + chr1_1:41381976-41381995 Msa0022210:CDS 60.0%
! GCACCCAGGGTGGATTTAGG+TGG - chr1_1:41381982-41382001 None:intergenic 60.0%
! GGAGCACCCAGGGTGGATTT+AGG - chr1_1:41381985-41382004 None:intergenic 60.0%
TGGATGCCCGCAAACGAGGG+AGG + chr1_1:41378513-41378532 Msa0022210:CDS 65.0%
GGATGCCCGCAAACGAGGGA+GGG + chr1_1:41378514-41378533 Msa0022210:CDS 65.0%
! TCGCGTCAGTGTCGGACACC+TGG + chr1_1:41379027-41379046 Msa0022210:intron 65.0%
!! ACCACCAGCAGGAGCACCCA+GGG - chr1_1:41381995-41382014 None:intergenic 65.0%
TCCACCCTGGGTGCTCCTGC+TGG + chr1_1:41381988-41382007 Msa0022210:CDS 70.0%
!! ACCAGCAGGAGCACCCAGGG+TGG - chr1_1:41381992-41382011 None:intergenic 70.0%
ACCCTGGGTGCTCCTGCTGG+TGG + chr1_1:41381991-41382010 Msa0022210:CDS 70.0%
!! CACCACCAGCAGGAGCACCC+AGG - chr1_1:41381996-41382015 None:intergenic 70.0%
CTGGGTGCTCCTGCTGGTGG+TGG + chr1_1:41381994-41382013 Msa0022210:CDS 70.0%
! GCGGCTGGGCCACCACCAGC+AGG - chr1_1:41382006-41382025 None:intergenic 80.0%
!! GGTGGTGGCCCAGCCGCACC+TGG + chr1_1:41382009-41382028 Msa0022210:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 41378219 41382384 41378219 ID=Msa0022210;Name=Msa0022210
chr1_1 mRNA 41378219 41382384 41378219 ID=Msa0022210-mRNA-1;Parent=Msa0022210;Name=Msa0022210-mRNA-1;_AED=0.07;_eAED=0.07;_QI=293|1|1|1|1|1|3|241|290
chr1_1 exon 41378219 41378578 41378219 ID=Msa0022210-mRNA-1:exon:12259;Parent=Msa0022210-mRNA-1
chr1_1 exon 41379580 41379634 41379580 ID=Msa0022210-mRNA-1:exon:12260;Parent=Msa0022210-mRNA-1
chr1_1 exon 41381393 41382384 41381393 ID=Msa0022210-mRNA-1:exon:12261;Parent=Msa0022210-mRNA-1
chr1_1 five_prime_UTR 41378219 41378511 41378219 ID=Msa0022210-mRNA-1:five_prime_utr;Parent=Msa0022210-mRNA-1
chr1_1 CDS 41378512 41378578 41378512 ID=Msa0022210-mRNA-1:cds;Parent=Msa0022210-mRNA-1
chr1_1 CDS 41379580 41379634 41379580 ID=Msa0022210-mRNA-1:cds;Parent=Msa0022210-mRNA-1
chr1_1 CDS 41381393 41382143 41381393 ID=Msa0022210-mRNA-1:cds;Parent=Msa0022210-mRNA-1
chr1_1 three_prime_UTR 41382144 41382384 41382144 ID=Msa0022210-mRNA-1:three_prime_utr;Parent=Msa0022210-mRNA-1
Gene Sequence

>Msa0022210

ATGGATGCCCGCAAACGAGGGAGGGTTGATGCTGCTGTTAATGGCTCCGTCAAGAAAACCAAACAAGAAATGGACTCAACTGGTGTAGGAAGCAAAACGAAGCCTTGTACCAAGTTTTTCAGCATTGCTGGCTGTCCATTTGGTGAGGGTTGTCACTTCTCACATCATGTTCCCGGTGGTTATAATGCCGTTGCCCAGATGATGAATCTTAAACCTGCTGCACCTCCTAGAAATGTTGCCGCCCCACCACCAGTCTCTAACAATGGTTCTGCTGTTAAAAGCCGCATATGTAACAAGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTCGGTAAACCTTTTGCTCCATCAGTTGATGATCACCGTCCAATGGCACCTACAAATGTTGGTCGTATGCCTGGTCGAGTTGAGGCTCCTTCTGGTCTAGGCGGTACTAGCTTTGGTGCCAATTCCACTGCCAAGATCAGTGTAGAAGCTTCTTTGGCTGGAGCTATCATTGGAAAGGGTGGTGTGCACTCGAAGCAGATATGTCGCCAAACAGGAGTCAAATTTTCAATTCGAGACCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAACATTTGATCAAATTGCACAAGCAAGTAACATGGTAAAAGATTTGCTTTTGACTCTATCAGTGTCTGCCCCACCTAAATCCACCCTGGGTGCTCCTGCTGGTGGTGGCCCAGCCGCACCTGGAAGAAACATCAAGACCAAGCTGTGTGAGAATTTTGCTAAAGGATCCTGCACATTTGGAGAAAGATGTCACTTTGCCCATGGAGCCGCTGAATTGCGAAAGATAGGAATCTAA
Protein sequence

>Msa0022210

MDARKRGRVDAAVNGSVKKTKQEMDSTGVGSKTKPCTKFFSIAGCPFGEGCHFSHHVPGGYNAVAQMMNLKPAAPPRNVAAPPPVSNNGSAVKSRICNKFNSAEGCKFGDKCHFAHGEWELGKPFAPSVDDHRPMAPTNVGRMPGRVEAPSGLGGTSFGANSTAKISVEASLAGAIIGKGGVHSKQICRQTGVKFSIRDHESDPNLRNIELEGTFDQIAQASNMVKDLLLTLSVSAPPKSTLGAPAGGGPAAPGRNIKTKLCENFAKGSCTFGERCHFAHGAAELRKIGI*