Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023600 | XP_039690067.1 | 76.923 | 416 | 73 | 7 | 1 | 406 | 1 | 403 | 0.0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023600 | sp|Q8L3W1|VRN1_ARATH | 25.526 | 333 | 198 | 9 | 7 | 289 | 4 | 336 | 6.99e-19 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0023600 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023600 | MtrunA17_Chr1g0163181 | 69.213 | 445 | 87 | 8 | 1 | 404 | 1 | 436 | 0.0 | 599 |
| Msa0023600 | MtrunA17_Chr1g0163201 | 76.322 | 397 | 71 | 7 | 20 | 406 | 18 | 401 | 0.0 | 586 |
| Msa0023600 | MtrunA17_Chr1g0163251 | 55.060 | 336 | 116 | 5 | 1 | 330 | 1 | 307 | 1.14e-118 | 351 |
| Msa0023600 | MtrunA17_Chr1g0163151 | 71.179 | 229 | 54 | 4 | 175 | 398 | 1 | 222 | 1.06e-109 | 322 |
| Msa0023600 | MtrunA17_Chr1g0163111 | 64.315 | 241 | 59 | 5 | 175 | 399 | 1 | 230 | 1.95e-99 | 296 |
| Msa0023600 | MtrunA17_Chr1g0163261 | 46.667 | 315 | 132 | 8 | 1 | 301 | 1 | 293 | 1.67e-83 | 258 |
| Msa0023600 | MtrunA17_Chr1g0163231 | 48.039 | 306 | 121 | 12 | 1 | 292 | 1 | 282 | 1.48e-79 | 247 |
| Msa0023600 | MtrunA17_Chr1g0171611 | 48.366 | 306 | 108 | 10 | 1 | 292 | 1 | 270 | 3.23e-79 | 246 |
| Msa0023600 | MtrunA17_Chr1g0163191 | 74.691 | 162 | 38 | 2 | 1 | 160 | 1 | 161 | 1.08e-69 | 217 |
| Msa0023600 | MtrunA17_Chr1g0163241 | 63.372 | 172 | 44 | 4 | 1 | 169 | 7 | 162 | 1.46e-63 | 201 |
| Msa0023600 | MtrunA17_Chr1g0162151 | 40.870 | 230 | 112 | 5 | 175 | 400 | 1 | 210 | 7.18e-42 | 147 |
| Msa0023600 | MtrunA17_Chr6g0476171 | 41.860 | 215 | 109 | 8 | 194 | 396 | 34 | 244 | 2.31e-41 | 146 |
| Msa0023600 | MtrunA17_Chr1g0208771 | 26.419 | 458 | 243 | 13 | 20 | 396 | 12 | 456 | 8.28e-35 | 134 |
| Msa0023600 | MtrunA17_Chr1g0163091 | 41.096 | 146 | 80 | 2 | 175 | 316 | 1 | 144 | 1.32e-32 | 120 |
| Msa0023600 | MtrunA17_Chr1g0163131 | 31.597 | 288 | 176 | 11 | 14 | 288 | 27 | 306 | 4.27e-30 | 118 |
| Msa0023600 | MtrunA17_Chr1g0163131 | 55.263 | 76 | 30 | 2 | 323 | 396 | 232 | 305 | 3.79e-17 | 81.6 |
| Msa0023600 | MtrunA17_Chr7g0233521 | 29.537 | 281 | 167 | 8 | 21 | 289 | 2 | 263 | 9.80e-30 | 116 |
| Msa0023600 | MtrunA17_Chr8g0390841 | 30.201 | 298 | 172 | 10 | 14 | 289 | 48 | 331 | 6.69e-29 | 118 |
| Msa0023600 | MtrunA17_Chr7g0233561 | 29.022 | 317 | 167 | 11 | 9 | 289 | 18 | 312 | 1.24e-28 | 114 |
| Msa0023600 | MtrunA17_Chr3g0103171 | 27.046 | 281 | 171 | 8 | 20 | 287 | 5 | 264 | 3.81e-28 | 111 |
| Msa0023600 | MtrunA17_Chr3g0131891 | 29.758 | 289 | 177 | 8 | 14 | 289 | 28 | 303 | 5.58e-28 | 112 |
| Msa0023600 | MtrunA17_Chr7g0233541 | 28.387 | 310 | 180 | 9 | 21 | 304 | 2 | 295 | 8.14e-28 | 111 |
| Msa0023600 | MtrunA17_Chr1g0163101 | 40.741 | 162 | 73 | 6 | 14 | 169 | 26 | 170 | 1.56e-26 | 105 |
| Msa0023600 | MtrunA17_Chr1g0162161 | 39.873 | 158 | 68 | 7 | 21 | 169 | 4 | 143 | 7.42e-26 | 102 |
| Msa0023600 | MtrunA17_Chr3g0103181 | 26.159 | 302 | 165 | 11 | 9 | 287 | 12 | 278 | 6.67e-23 | 97.8 |
| Msa0023600 | MtrunA17_Chr1g0163221 | 25.381 | 394 | 226 | 16 | 14 | 396 | 20 | 356 | 1.03e-22 | 98.6 |
| Msa0023600 | MtrunA17_Chr1g0163071 | 25.342 | 292 | 189 | 6 | 21 | 289 | 2 | 287 | 4.01e-22 | 95.9 |
| Msa0023600 | MtrunA17_Chr6g0476181 | 37.821 | 156 | 71 | 5 | 21 | 171 | 2 | 136 | 4.03e-22 | 92.4 |
| Msa0023600 | MtrunA17_Chr1g0163121 | 45.455 | 110 | 55 | 3 | 19 | 124 | 9 | 117 | 4.88e-22 | 91.7 |
| Msa0023600 | MtrunA17_Chr4g0067431 | 28.155 | 309 | 179 | 12 | 9 | 287 | 15 | 310 | 7.39e-22 | 95.5 |
| Msa0023600 | MtrunA17_Chr7g0233531 | 28.772 | 285 | 164 | 9 | 21 | 289 | 2 | 263 | 1.81e-20 | 90.9 |
| Msa0023600 | MtrunA17_Chr1g0163141 | 36.943 | 157 | 86 | 5 | 17 | 171 | 7 | 152 | 8.76e-19 | 84.0 |
| Msa0023600 | MtrunA17_Chr1g0163081 | 37.705 | 122 | 69 | 4 | 21 | 138 | 6 | 124 | 1.01e-18 | 82.4 |
| Msa0023600 | MtrunA17_Chr7g0233571 | 31.977 | 172 | 91 | 4 | 14 | 181 | 19 | 168 | 1.37e-16 | 78.6 |
| Msa0023600 | MtrunA17_Chr3g0103151 | 34.921 | 126 | 73 | 5 | 9 | 128 | 12 | 134 | 2.59e-16 | 76.3 |
| Msa0023600 | MtrunA17_Chr3g0103191 | 26.848 | 257 | 154 | 11 | 9 | 254 | 12 | 245 | 4.10e-16 | 77.8 |
| Msa0023600 | MtrunA17_Chr1g0163161 | 35.616 | 146 | 67 | 6 | 33 | 169 | 1 | 128 | 1.39e-15 | 73.2 |
| Msa0023600 | MtrunA17_Chr5g0419201 | 37.895 | 95 | 55 | 2 | 14 | 104 | 25 | 119 | 2.01e-15 | 74.3 |
| Msa0023600 | MtrunA17_Chr6g0467351 | 35.135 | 111 | 67 | 3 | 13 | 118 | 23 | 133 | 4.54e-14 | 71.2 |
| Msa0023600 | MtrunA17_Chr4g0033961 | 32.593 | 135 | 79 | 5 | 7 | 129 | 4 | 138 | 5.38e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023600 | AT3G18990.2 | 25.526 | 333 | 198 | 9 | 7 | 289 | 4 | 336 | 5.55e-20 | 91.3 |
| Msa0023600 | AT3G18990.1 | 25.526 | 333 | 198 | 9 | 7 | 289 | 4 | 336 | 7.11e-20 | 90.5 |
Find 71 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAGGTTGGTTCGTTTC+TGG | 0.065597 | 1_1:-45013098 | None:intergenic |
| GTGTTCAACAAGAAATATTT+TGG | 0.156532 | 1_1:+45011903 | Msa0023600:CDS |
| GAACACCGTTTGGGAATTTA+AGG | 0.181202 | 1_1:-45011886 | None:intergenic |
| TTTGCCAAGTTTCTGAAATA+TGG | 0.185660 | 1_1:+45011971 | Msa0023600:CDS |
| ATTATCTGTTTGTTCTAATA+AGG | 0.215815 | 1_1:+45014134 | Msa0023600:CDS |
| GACATTATAATTTCAAAATA+AGG | 0.216590 | 1_1:-45012724 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.236326 | 1_1:-45013061 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1_1:+45013933 | Msa0023600:CDS |
| CTCTTAACTTTCAAATTCTT+AGG | 0.273033 | 1_1:+45011998 | Msa0023600:CDS |
| ATCATCAACGGATTTGATAT+TGG | 0.277153 | 1_1:-45012077 | None:intergenic |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_1:+45011927 | Msa0023600:CDS |
| TATTTCTCCACATAAATCTT+AGG | 0.291278 | 1_1:-45011836 | None:intergenic |
| TTAAAGGGACTGCAACAATA+AGG | 0.291725 | 1_1:+45012891 | Msa0023600:CDS |
| AGATTTATGTGGAGAAATAT+TGG | 0.302749 | 1_1:+45011840 | Msa0023600:CDS |
| TTTGGGAATTTAAGGAATAT+AGG | 0.312034 | 1_1:-45011878 | None:intergenic |
| CTAGTTCTTTGAACTTGCTT+TGG | 0.330347 | 1_1:-45012205 | None:intergenic |
| ATTTCTTGTTGAACACCGTT+TGG | 0.353826 | 1_1:-45011896 | None:intergenic |
| TTGGGAATTTAAGGAATATA+GGG | 0.355557 | 1_1:-45011877 | None:intergenic |
| TTATTAGAACAAACAGATAA+TGG | 0.369349 | 1_1:-45014132 | None:intergenic |
| TGGCAAAAGAAAAGTGAGTA+TGG | 0.382194 | 1_1:+45012231 | Msa0023600:CDS |
| ATAATTTATTTCTAAAGTAT+TGG | 0.389854 | 1_1:-45012053 | None:intergenic |
| CTGCAGATTCAGTAAAGGTT+GGG | 0.409562 | 1_1:+45014005 | Msa0023600:CDS |
| TTTCTTGTTGAACACCGTTT+GGG | 0.413820 | 1_1:-45011895 | None:intergenic |
| TAAAGGGACTGCAACAATAA+GGG | 0.414381 | 1_1:+45012892 | Msa0023600:CDS |
| GCATAAAACATTCAAGGTTA+TGG | 0.414778 | 1_1:+45013757 | Msa0023600:CDS |
| CGATTAAAGCTTCAGATGTT+GGG | 0.416702 | 1_1:-45012681 | None:intergenic |
| AAGATTATCCTATGAAAATC+TGG | 0.419859 | 1_1:-45011672 | None:intergenic |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.426567 | 1_1:+45014039 | Msa0023600:CDS |
| AAAACCTAGGAATTTCTTTG+AGG | 0.431350 | 1_1:-45013113 | None:intergenic |
| TTACGCCAATGGTTATTACT+TGG | 0.435703 | 1_1:+45012753 | Msa0023600:CDS |
| ACCAAAGGAGTTTATGAAAA+GGG | 0.442898 | 1_1:+45013900 | Msa0023600:CDS |
| AAGTATTATGAGAGTATTTG+TGG | 0.445350 | 1_1:+45013982 | Msa0023600:CDS |
| CCTAGGAATTTCTTTGAGGT+TGG | 0.447970 | 1_1:-45013109 | None:intergenic |
| CAAGTTCAAAGAACTAGAAA+TGG | 0.448280 | 1_1:+45012211 | Msa0023600:CDS |
| TGTTCTCTTGAAAATATACT+TGG | 0.449633 | 1_1:-45012857 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1_1:+45013934 | Msa0023600:CDS |
| TCGATTAAAGCTTCAGATGT+TGG | 0.454021 | 1_1:-45012682 | None:intergenic |
| CAAAGTAGCCATGGTGAAGA+AGG | 0.465707 | 1_1:+45012648 | Msa0023600:CDS |
| CCAACCTCAAAGAAATTCCT+AGG | 0.466549 | 1_1:+45013109 | Msa0023600:CDS |
| ATATCCATATTTCAGAAACT+TGG | 0.480994 | 1_1:-45011975 | None:intergenic |
| AGTGATGAAGTGAGTGATAA+GGG | 0.491546 | 1_1:+45012163 | Msa0023600:CDS |
| GGACTCTGGAAGTGAGTTTG+AGG | 0.495977 | 1_1:+45012927 | Msa0023600:CDS |
| GCAAATTTGAGATGATTCAA+AGG | 0.505985 | 1_1:+45013035 | Msa0023600:CDS |
| GATGGAGCATAAAACATTCA+AGG | 0.521684 | 1_1:+45013751 | Msa0023600:CDS |
| CAATAAGGGTTGGTAAAGAA+AGG | 0.522250 | 1_1:+45012906 | Msa0023600:CDS |
| TACCAAAGGAGTTTATGAAA+AGG | 0.523215 | 1_1:+45013899 | Msa0023600:CDS |
| AAGTGATGAAGTGAGTGATA+AGG | 0.524193 | 1_1:+45012162 | Msa0023600:CDS |
| GGGATGTCATGAAAATATTG+TGG | 0.531604 | 1_1:+45013921 | Msa0023600:CDS |
| TTAACTTTCAAATTCTTAGG+TGG | 0.532981 | 1_1:+45012001 | Msa0023600:CDS |
| GAGGGTTCCTAAGATTTATG+TGG | 0.536061 | 1_1:+45011829 | Msa0023600:intron |
| TGTGGCTGCAGATTCAGTAA+AGG | 0.538766 | 1_1:+45014000 | Msa0023600:CDS |
| ATATTCCTTAAATTCCCAAA+CGG | 0.544640 | 1_1:+45011881 | Msa0023600:CDS |
| GCTGCAGATTCAGTAAAGGT+TGG | 0.545755 | 1_1:+45014004 | Msa0023600:CDS |
| GTATTTGCAGGGTGTACCAA+AGG | 0.558528 | 1_1:+45013885 | Msa0023600:intron |
| ACTTACCAAGTAATAACCAT+TGG | 0.568490 | 1_1:-45012758 | None:intergenic |
| TACAAAAGGTCGTGATGTGA+TGG | 0.575558 | 1_1:+45013733 | Msa0023600:intron |
| TGCAGATTCAGTAAAGGTTG+GGG | 0.578364 | 1_1:+45014006 | Msa0023600:CDS |
| CCAAAGGAGTTTATGAAAAG+GGG | 0.581936 | 1_1:+45013901 | Msa0023600:CDS |
| TATGGTGAAGAATAGAGTCC+CGG | 0.582585 | 1_1:+45013775 | Msa0023600:CDS |
| GGTTGGTAAAGAAAGGACTC+TGG | 0.588239 | 1_1:+45012913 | Msa0023600:CDS |
| AATCTTGTATGAGTGGTGGT+TGG | 0.588690 | 1_1:+45012969 | Msa0023600:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589089 | 1_1:+45012896 | Msa0023600:CDS |
| ATGTCACATACTTACGCCAA+TGG | 0.590674 | 1_1:+45012742 | Msa0023600:CDS |
| GGCTTCAGCACAATCATCAA+CGG | 0.595487 | 1_1:-45012089 | None:intergenic |
| GAGTGATAAGGGTTCAGATG+AGG | 0.595561 | 1_1:+45012174 | Msa0023600:CDS |
| AGGTAGTAACAAAGTAGCCA+TGG | 0.597558 | 1_1:+45012639 | Msa0023600:intron |
| TATGTGGAGAAATATTGGAA+AGG | 0.599905 | 1_1:+45011845 | Msa0023600:CDS |
| ATTTATGAAAGAATGCAAAG+TGG | 0.609427 | 1_1:+45014032 | Msa0023600:CDS |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.631530 | 1_1:+45013947 | Msa0023600:CDS |
| TGGAATATGTTGAAATGACA+TGG | 0.667913 | 1_1:-45011652 | None:intergenic |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1_1:+45013935 | Msa0023600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAAAGTTAAGATATT+TGG | + | chr1_1:45012028-45012047 | Msa0023600:intron | 10.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | - | chr1_1:45012056-45012075 | None:intergenic | 10.0% |
| !! | TATGATAAACAAAATAATAT+TGG | + | chr1_1:45012551-45012570 | Msa0023600:intron | 10.0% |
| !!! | AAATAATCTTTAAATTTTTC+AGG | + | chr1_1:45012619-45012638 | Msa0023600:intron | 10.0% |
| !!! | TTTAGATTTTATTATTGTAA+AGG | + | chr1_1:45013344-45013363 | Msa0023600:intron | 10.0% |
| !!! | TTAGATTTTATTATTGTAAA+GGG | + | chr1_1:45013345-45013364 | Msa0023600:intron | 10.0% |
| !! | ATATTATTATTTCAAATTCA+CGG | - | chr1_1:45013514-45013533 | None:intergenic | 10.0% |
| !!! | TTTATTTGTTTTTTTTTTGA+AGG | + | chr1_1:45013533-45013552 | Msa0023600:intron | 10.0% |
| !!! | TCAAATATATCTATATTTTT+TGG | + | chr1_1:45013662-45013681 | Msa0023600:intron | 10.0% |
| !!! | CAAATATATCTATATTTTTT+GGG | + | chr1_1:45013663-45013682 | Msa0023600:intron | 10.0% |
| !! | ACATTATAAATGAAACATAA+TGG | - | chr1_1:45011748-45011767 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1_1:45011942-45011961 | Msa0023600:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1_1:45011943-45011962 | Msa0023600:CDS | 15.0% |
| !! | ATTACTAATTTACTAGATTT+AGG | + | chr1_1:45012313-45012332 | Msa0023600:intron | 15.0% |
| !!! | ATTTTTCTACATTTGATTTT+AGG | - | chr1_1:45012603-45012622 | None:intergenic | 15.0% |
| !!! | AAAATAAGGATTTTCATTAT+TGG | - | chr1_1:45012713-45012732 | None:intergenic | 15.0% |
| !! | GACATTATAATTTCAAAATA+AGG | - | chr1_1:45012727-45012746 | None:intergenic | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1_1:45013135-45013154 | Msa0023600:intron | 15.0% |
| !!! | AAACTTATGAATGATTTTTA+TGG | + | chr1_1:45013437-45013456 | Msa0023600:intron | 15.0% |
| !!! | GTATTTCAAATTTAAGATTA+AGG | - | chr1_1:45013491-45013510 | None:intergenic | 15.0% |
| !! | TATTATTATTTCAAATTCAC+GGG | - | chr1_1:45013513-45013532 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1_1:45013648-45013667 | None:intergenic | 15.0% |
| !!! | AATTTTTTATTTGTATTTGC+AGG | + | chr1_1:45013873-45013892 | Msa0023600:intron | 15.0% |
| !!! | ATTTTTTATTTGTATTTGCA+GGG | + | chr1_1:45013874-45013893 | Msa0023600:intron | 15.0% |
| !!! | TGTTCAACAAGAAATATTTT+GGG | + | chr1_1:45011904-45011923 | Msa0023600:CDS | 20.0% |
| !!! | TACTTTTTAAGAGTTATTCA+AGG | + | chr1_1:45012396-45012415 | Msa0023600:intron | 20.0% |
| !!! | ACTTTTTAAGAGTTATTCAA+GGG | + | chr1_1:45012397-45012416 | Msa0023600:intron | 20.0% |
| !! | TTTATTAGAGACATTAACTA+AGG | - | chr1_1:45012815-45012834 | None:intergenic | 20.0% |
| !!! | AACACTTGAACAATTTTAAA+GGG | + | chr1_1:45012876-45012895 | Msa0023600:CDS | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1_1:45013064-45013083 | None:intergenic | 20.0% |
| !!! | CAAGAAAATTTACTTTTGAA+TGG | - | chr1_1:45013296-45013315 | None:intergenic | 20.0% |
| !!! | TTCAAAAGTAAATTTTCTTG+AGG | + | chr1_1:45013296-45013315 | Msa0023600:intron | 20.0% |
| !!! | TCAAAAGTAAATTTTCTTGA+GGG | + | chr1_1:45013297-45013316 | Msa0023600:intron | 20.0% |
| !! | AGGATTAATTACATCAAATA+TGG | + | chr1_1:45013799-45013818 | Msa0023600:intron | 20.0% |
| !! | TTATTAGAACAAACAGATAA+TGG | - | chr1_1:45014135-45014154 | None:intergenic | 20.0% |
| !! | ATTATCTGTTTGTTCTAATA+AGG | + | chr1_1:45014134-45014153 | Msa0023600:CDS | 20.0% |
| !! | AACATATTCCAGATTTTCAT+AGG | + | chr1_1:45011664-45011683 | Msa0023600:CDS | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | - | chr1_1:45011675-45011694 | None:intergenic | 25.0% |
| !!! | TTTTAATTTCTTTGTTGCAG+AGG | + | chr1_1:45011810-45011829 | Msa0023600:intron | 25.0% |
| !! | TTTAATTTCTTTGTTGCAGA+GGG | + | chr1_1:45011811-45011830 | Msa0023600:intron | 25.0% |
| ! | TATTTCTCCACATAAATCTT+AGG | - | chr1_1:45011839-45011858 | None:intergenic | 25.0% |
| ! | AGATTTATGTGGAGAAATAT+TGG | + | chr1_1:45011840-45011859 | Msa0023600:CDS | 25.0% |
| ! | TTGGGAATTTAAGGAATATA+GGG | - | chr1_1:45011880-45011899 | None:intergenic | 25.0% |
| ! | TTTGGGAATTTAAGGAATAT+AGG | - | chr1_1:45011881-45011900 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAATTCCCAAA+CGG | + | chr1_1:45011881-45011900 | Msa0023600:CDS | 25.0% |
| !! | GTGTTCAACAAGAAATATTT+TGG | + | chr1_1:45011903-45011922 | Msa0023600:CDS | 25.0% |
| ! | ATATCCATATTTCAGAAACT+TGG | - | chr1_1:45011978-45011997 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCTT+AGG | + | chr1_1:45011998-45012017 | Msa0023600:CDS | 25.0% |
| ! | TTAACTTTCAAATTCTTAGG+TGG | + | chr1_1:45012001-45012020 | Msa0023600:CDS | 25.0% |
| !!! | TGAGTTTTCTCTCTTTATTT+TGG | + | chr1_1:45012285-45012304 | Msa0023600:intron | 25.0% |
| !!! | TGCAATTTTTTTTGTCTGAA+AGG | + | chr1_1:45012425-45012444 | Msa0023600:intron | 25.0% |
| !! | TAAACCATTATTTGAAACAG+TGG | + | chr1_1:45012831-45012850 | Msa0023600:intron | 25.0% |
| ! | TGTTCTCTTGAAAATATACT+TGG | - | chr1_1:45012860-45012879 | None:intergenic | 25.0% |
| !! | GAACACTTGAACAATTTTAA+AGG | + | chr1_1:45012875-45012894 | Msa0023600:CDS | 25.0% |
| ! | AAGAAAAAATCTTGTATGAG+TGG | + | chr1_1:45012962-45012981 | Msa0023600:CDS | 25.0% |
| ! | AAAGAAAGAAAGAAAAACCT+AGG | - | chr1_1:45013129-45013148 | None:intergenic | 25.0% |
| !! | TATTTCTTTTATCCATGACA+AGG | + | chr1_1:45013213-45013232 | Msa0023600:intron | 25.0% |
| !! | TGAATGATTTTTATGGTTCT+TGG | + | chr1_1:45013444-45013463 | Msa0023600:intron | 25.0% |
| !!! | AACTTTTTGATAGTTAGTGA+TGG | + | chr1_1:45013580-45013599 | Msa0023600:intron | 25.0% |
| ! | TTTGATGTAATTAATCCTAC+CGG | - | chr1_1:45013797-45013816 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | + | chr1_1:45013933-45013952 | Msa0023600:CDS | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | + | chr1_1:45013934-45013953 | Msa0023600:CDS | 25.0% |
| !!! | AAGTATTATGAGAGTATTTG+TGG | + | chr1_1:45013982-45014001 | Msa0023600:CDS | 25.0% |
| ! | ATTTATGAAAGAATGCAAAG+TGG | + | chr1_1:45014032-45014051 | Msa0023600:CDS | 25.0% |
| !! | GTTTTTGATGTTTCAATTGA+AGG | + | chr1_1:45014102-45014121 | Msa0023600:CDS | 25.0% |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1_1:45011845-45011864 | Msa0023600:CDS | 30.0% | |
| !! | TCAACAAGAAATATTTTGGG+TGG | + | chr1_1:45011907-45011926 | Msa0023600:CDS | 30.0% |
| !! | TTTGCCAAGTTTCTGAAATA+TGG | + | chr1_1:45011971-45011990 | Msa0023600:CDS | 30.0% |
| ! | ATCATCAACGGATTTGATAT+TGG | - | chr1_1:45012080-45012099 | None:intergenic | 30.0% |
| ! | ACTTTCATGAACTTCTTTTG+TGG | - | chr1_1:45012146-45012165 | None:intergenic | 30.0% |
| CAAGTTCAAAGAACTAGAAA+TGG | + | chr1_1:45012211-45012230 | Msa0023600:CDS | 30.0% | |
| ACTTACCAAGTAATAACCAT+TGG | - | chr1_1:45012761-45012780 | None:intergenic | 30.0% | |
| GTATCCACTGTTTCAAATAA+TGG | - | chr1_1:45012838-45012857 | None:intergenic | 30.0% | |
| AAAAAATCTTGTATGAGTGG+TGG | + | chr1_1:45012965-45012984 | Msa0023600:CDS | 30.0% | |
| ! | GCAAATTTGAGATGATTCAA+AGG | + | chr1_1:45013035-45013054 | Msa0023600:CDS | 30.0% |
| AAAACCTAGGAATTTCTTTG+AGG | - | chr1_1:45013116-45013135 | None:intergenic | 30.0% | |
| TATCCATGACAAGGTTATAA+AGG | + | chr1_1:45013222-45013241 | Msa0023600:intron | 30.0% | |
| ATCCATGACAAGGTTATAAA+GGG | + | chr1_1:45013223-45013242 | Msa0023600:intron | 30.0% | |
| TGTGTTTATGCATGTACAAA+AGG | + | chr1_1:45013719-45013738 | Msa0023600:intron | 30.0% | |
| GCATAAAACATTCAAGGTTA+TGG | + | chr1_1:45013757-45013776 | Msa0023600:CDS | 30.0% | |
| TTGATGTAATTAATCCTACC+GGG | - | chr1_1:45013796-45013815 | None:intergenic | 30.0% | |
| ATGTATTTCGAACATCTCTA+TGG | - | chr1_1:45013841-45013860 | None:intergenic | 30.0% | |
| TACCAAAGGAGTTTATGAAA+AGG | + | chr1_1:45013899-45013918 | Msa0023600:CDS | 30.0% | |
| ACCAAAGGAGTTTATGAAAA+GGG | + | chr1_1:45013900-45013919 | Msa0023600:CDS | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | + | chr1_1:45013935-45013954 | Msa0023600:CDS | 30.0% | |
| TTTCTTGTTGAACACCGTTT+GGG | - | chr1_1:45011898-45011917 | None:intergenic | 35.0% | |
| ATTTCTTGTTGAACACCGTT+TGG | - | chr1_1:45011899-45011918 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1_1:45011917-45011936 | Msa0023600:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1_1:45011927-45011946 | Msa0023600:CDS | 35.0% | |
| ! | ACTTTCTTGACCTCTTTTTG+TGG | - | chr1_1:45012113-45012132 | None:intergenic | 35.0% |
| AAGTGATGAAGTGAGTGATA+AGG | + | chr1_1:45012162-45012181 | Msa0023600:CDS | 35.0% | |
| AGTGATGAAGTGAGTGATAA+GGG | + | chr1_1:45012163-45012182 | Msa0023600:CDS | 35.0% | |
| ! | CTAGTTCTTTGAACTTGCTT+TGG | - | chr1_1:45012208-45012227 | None:intergenic | 35.0% |
| TGGCAAAAGAAAAGTGAGTA+TGG | + | chr1_1:45012231-45012250 | Msa0023600:CDS | 35.0% | |
| ! | TGAGAATTTTTGTTGGGTAG+TGG | - | chr1_1:45012263-45012282 | None:intergenic | 35.0% |
| ACTACCCAACAAAAATTCTC+AGG | + | chr1_1:45012262-45012281 | Msa0023600:CDS | 35.0% | |
| ! | CTCACCTGAGAATTTTTGTT+GGG | - | chr1_1:45012269-45012288 | None:intergenic | 35.0% |
| ! | ACTCACCTGAGAATTTTTGT+TGG | - | chr1_1:45012270-45012289 | None:intergenic | 35.0% |
| CGATTAAAGCTTCAGATGTT+GGG | - | chr1_1:45012684-45012703 | None:intergenic | 35.0% | |
| TCGATTAAAGCTTCAGATGT+TGG | - | chr1_1:45012685-45012704 | None:intergenic | 35.0% | |
| TTACGCCAATGGTTATTACT+TGG | + | chr1_1:45012753-45012772 | Msa0023600:CDS | 35.0% | |
| TTAAAGGGACTGCAACAATA+AGG | + | chr1_1:45012891-45012910 | Msa0023600:CDS | 35.0% | |
| TAAAGGGACTGCAACAATAA+GGG | + | chr1_1:45012892-45012911 | Msa0023600:CDS | 35.0% | |
| !! | CAATAAGGGTTGGTAAAGAA+AGG | + | chr1_1:45012906-45012925 | Msa0023600:CDS | 35.0% |
| ATCCCTTTATAACCTTGTCA+TGG | - | chr1_1:45013228-45013247 | None:intergenic | 35.0% | |
| GATGGAGCATAAAACATTCA+AGG | + | chr1_1:45013751-45013770 | Msa0023600:CDS | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+GGG | + | chr1_1:45013901-45013920 | Msa0023600:CDS | 35.0% | |
| GGGATGTCATGAAAATATTG+TGG | + | chr1_1:45013921-45013940 | Msa0023600:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr1_1:45014039-45014058 | Msa0023600:CDS | 35.0% | |
| GAGGGTTCCTAAGATTTATG+TGG | + | chr1_1:45011829-45011848 | Msa0023600:intron | 40.0% | |
| GAACACCGTTTGGGAATTTA+AGG | - | chr1_1:45011889-45011908 | None:intergenic | 40.0% | |
| AGGTAGTAACAAAGTAGCCA+TGG | + | chr1_1:45012639-45012658 | Msa0023600:intron | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | - | chr1_1:45012659-45012678 | None:intergenic | 40.0% |
| ATGTCACATACTTACGCCAA+TGG | + | chr1_1:45012742-45012761 | Msa0023600:CDS | 40.0% | |
| AATCTTGTATGAGTGGTGGT+TGG | + | chr1_1:45012969-45012988 | Msa0023600:CDS | 40.0% | |
| !! | CCTAGGAATTTCTTTGAGGT+TGG | - | chr1_1:45013112-45013131 | None:intergenic | 40.0% |
| CCAACCTCAAAGAAATTCCT+AGG | + | chr1_1:45013109-45013128 | Msa0023600:CDS | 40.0% | |
| GGTTATAAAGGGATCTCTTG+TGG | + | chr1_1:45013234-45013253 | Msa0023600:intron | 40.0% | |
| GATCTCTTGTGGTGTAAAGA+AGG | + | chr1_1:45013245-45013264 | Msa0023600:intron | 40.0% | |
| GTAAAGAAGGAAGACATTGC+AGG | + | chr1_1:45013258-45013277 | Msa0023600:intron | 40.0% | |
| AAGACATTGCAGGAACTTCT+AGG | + | chr1_1:45013268-45013287 | Msa0023600:intron | 40.0% | |
| TACAAAAGGTCGTGATGTGA+TGG | + | chr1_1:45013733-45013752 | Msa0023600:intron | 40.0% | |
| TATGGTGAAGAATAGAGTCC+CGG | + | chr1_1:45013775-45013794 | Msa0023600:CDS | 40.0% | |
| ! | CCCCTTTTCATAAACTCCTT+TGG | - | chr1_1:45013904-45013923 | None:intergenic | 40.0% |
| TGAAAATGGGGAGAAAGTCA+TGG | + | chr1_1:45013947-45013966 | Msa0023600:CDS | 40.0% | |
| CTGCAGATTCAGTAAAGGTT+GGG | + | chr1_1:45014005-45014024 | Msa0023600:CDS | 40.0% | |
| TGCAGATTCAGTAAAGGTTG+GGG | + | chr1_1:45014006-45014025 | Msa0023600:CDS | 40.0% | |
| GGCTTCAGCACAATCATCAA+CGG | - | chr1_1:45012092-45012111 | None:intergenic | 45.0% | |
| TGTGCTGAAGCCACAAAAAG+AGG | + | chr1_1:45012100-45012119 | Msa0023600:CDS | 45.0% | |
| GAGTGATAAGGGTTCAGATG+AGG | + | chr1_1:45012174-45012193 | Msa0023600:CDS | 45.0% | |
| CAAAGTAGCCATGGTGAAGA+AGG | + | chr1_1:45012648-45012667 | Msa0023600:CDS | 45.0% | |
| !! | GGTTGGTAAAGAAAGGACTC+TGG | + | chr1_1:45012913-45012932 | Msa0023600:CDS | 45.0% |
| !! | CTTTGAGGTTGGTTCGTTTC+TGG | - | chr1_1:45013101-45013120 | None:intergenic | 45.0% |
| GTATTTGCAGGGTGTACCAA+AGG | + | chr1_1:45013885-45013904 | Msa0023600:intron | 45.0% | |
| TGTGGCTGCAGATTCAGTAA+AGG | + | chr1_1:45014000-45014019 | Msa0023600:CDS | 45.0% | |
| GCTGCAGATTCAGTAAAGGT+TGG | + | chr1_1:45014004-45014023 | Msa0023600:CDS | 45.0% | |
| !!! | AAAAAAAATCATATTTTTAT+AGG | - | chr1_1:45012508-45012527 | None:intergenic | 5.0% |
| !!! | TAAAAATATGATTTTTTTTA+AGG | + | chr1_1:45012509-45012528 | Msa0023600:intron | 5.0% |
| !!! | TATATATATATTTTTGAATT+TGG | + | chr1_1:45013409-45013428 | Msa0023600:intron | 5.0% |
| GGGACTGCAACAATAAGGGT+TGG | + | chr1_1:45012896-45012915 | Msa0023600:CDS | 50.0% | |
| ! | GGACTCTGGAAGTGAGTTTG+AGG | + | chr1_1:45012927-45012946 | Msa0023600:CDS | 50.0% |
| GTGAAGAATAGAGTCCCGGT+AGG | + | chr1_1:45013779-45013798 | Msa0023600:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 45011654 | 45014173 | 45011654 | ID=Msa0023600;Name=Msa0023600 |
| chr1_1 | mRNA | 45011654 | 45014173 | 45011654 | ID=Msa0023600-mRNA-1;Parent=Msa0023600;Name=Msa0023600-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.71|0.5|8|0|413 |
| chr1_1 | exon | 45011654 | 45011710 | 45011654 | ID=Msa0023600-mRNA-1:exon:12916;Parent=Msa0023600-mRNA-1 |
| chr1_1 | exon | 45011830 | 45012036 | 45011830 | ID=Msa0023600-mRNA-1:exon:12917;Parent=Msa0023600-mRNA-1 |
| chr1_1 | exon | 45012043 | 45012283 | 45012043 | ID=Msa0023600-mRNA-1:exon:12918;Parent=Msa0023600-mRNA-1 |
| chr1_1 | exon | 45012641 | 45012774 | 45012641 | ID=Msa0023600-mRNA-1:exon:12919;Parent=Msa0023600-mRNA-1 |
| chr1_1 | exon | 45012851 | 45012948 | 45012851 | ID=Msa0023600-mRNA-1:exon:12920;Parent=Msa0023600-mRNA-1 |
| chr1_1 | exon | 45012961 | 45013130 | 45012961 | ID=Msa0023600-mRNA-1:exon:12921;Parent=Msa0023600-mRNA-1 |
| chr1_1 | exon | 45013741 | 45013796 | 45013741 | ID=Msa0023600-mRNA-1:exon:12922;Parent=Msa0023600-mRNA-1 |
| chr1_1 | exon | 45013895 | 45014173 | 45013895 | ID=Msa0023600-mRNA-1:exon:12923;Parent=Msa0023600-mRNA-1 |
| chr1_1 | CDS | 45011654 | 45011710 | 45011654 | ID=Msa0023600-mRNA-1:cds;Parent=Msa0023600-mRNA-1 |
| chr1_1 | CDS | 45011830 | 45012036 | 45011830 | ID=Msa0023600-mRNA-1:cds;Parent=Msa0023600-mRNA-1 |
| chr1_1 | CDS | 45012043 | 45012283 | 45012043 | ID=Msa0023600-mRNA-1:cds;Parent=Msa0023600-mRNA-1 |
| chr1_1 | CDS | 45012641 | 45012774 | 45012641 | ID=Msa0023600-mRNA-1:cds;Parent=Msa0023600-mRNA-1 |
| chr1_1 | CDS | 45012851 | 45012948 | 45012851 | ID=Msa0023600-mRNA-1:cds;Parent=Msa0023600-mRNA-1 |
| chr1_1 | CDS | 45012961 | 45013130 | 45012961 | ID=Msa0023600-mRNA-1:cds;Parent=Msa0023600-mRNA-1 |
| chr1_1 | CDS | 45013741 | 45013796 | 45013741 | ID=Msa0023600-mRNA-1:cds;Parent=Msa0023600-mRNA-1 |
| chr1_1 | CDS | 45013895 | 45014173 | 45013895 | ID=Msa0023600-mRNA-1:cds;Parent=Msa0023600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
