Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023730 | sp|Q9SLH0|EIL1_ARATH | 61.000 | 200 | 78 | 0 | 1 | 200 | 108 | 307 | 1.68e-86 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0023730 | TF | EIL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023730 | MtrunA17_Chr6g0476301 | 90.808 | 359 | 29 | 2 | 1 | 358 | 5 | 360 | 0.0 | 656 |
| Msa0023730 | MtrunA17_Chr6g0473191 | 90.068 | 292 | 29 | 0 | 1 | 292 | 5 | 296 | 0.0 | 533 |
| Msa0023730 | MtrunA17_Chr6g0476291 | 89.474 | 266 | 28 | 0 | 1 | 266 | 5 | 270 | 3.13e-170 | 483 |
| Msa0023730 | MtrunA17_Chr3g0080401 | 50.843 | 356 | 147 | 9 | 1 | 351 | 5 | 337 | 3.25e-108 | 327 |
| Msa0023730 | MtrunA17_Chr3g0118361 | 44.379 | 338 | 154 | 9 | 1 | 311 | 110 | 440 | 1.08e-90 | 291 |
| Msa0023730 | MtrunA17_Chr5g0440591 | 56.250 | 224 | 97 | 1 | 1 | 224 | 107 | 329 | 6.66e-88 | 284 |
| Msa0023730 | MtrunA17_Chr2g0329151 | 58.673 | 196 | 78 | 2 | 1 | 196 | 98 | 290 | 1.17e-77 | 257 |
| Msa0023730 | MtrunA17_Chr3g0124291 | 51.759 | 199 | 85 | 4 | 1 | 193 | 87 | 280 | 3.80e-69 | 229 |
| Msa0023730 | MtrunA17_Chr8g0382561 | 51.020 | 196 | 92 | 3 | 1 | 193 | 77 | 271 | 9.65e-66 | 221 |
| Msa0023730 | MtrunA17_Chr7g0260281 | 38.235 | 102 | 53 | 2 | 6 | 99 | 21 | 120 | 1.35e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023730 | AT2G27050.1 | 61.000 | 200 | 78 | 0 | 1 | 200 | 108 | 307 | 1.71e-87 | 282 |
| Msa0023730 | AT3G20770.1 | 55.556 | 234 | 92 | 4 | 1 | 229 | 107 | 333 | 1.27e-84 | 276 |
| Msa0023730 | AT5G10120.1 | 56.923 | 195 | 82 | 1 | 1 | 193 | 81 | 275 | 6.38e-75 | 246 |
| Msa0023730 | AT1G73730.2 | 56.633 | 196 | 80 | 2 | 1 | 196 | 86 | 276 | 7.00e-74 | 246 |
| Msa0023730 | AT1G73730.1 | 56.633 | 196 | 80 | 2 | 1 | 196 | 98 | 288 | 7.89e-74 | 246 |
| Msa0023730 | AT5G65100.1 | 53.886 | 193 | 88 | 1 | 1 | 192 | 111 | 303 | 5.80e-68 | 230 |
| Msa0023730 | AT5G21120.3 | 39.228 | 311 | 170 | 8 | 1 | 301 | 109 | 410 | 5.21e-64 | 218 |
| Msa0023730 | AT5G21120.1 | 39.228 | 311 | 170 | 8 | 1 | 301 | 109 | 410 | 5.21e-64 | 218 |
| Msa0023730 | AT5G21120.2 | 39.228 | 311 | 170 | 8 | 1 | 301 | 116 | 417 | 6.40e-64 | 218 |
Find 109 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGATGCTGCATATTT+TGG | 0.183879 | 1_1:+45336798 | None:intergenic |
| CTTGATTGCCATGAAAATTT+TGG | 0.189175 | 1_1:+45336774 | None:intergenic |
| TATATGATATGTTAGCTTAT+AGG | 0.193817 | 1_1:-45337815 | Msa0023730:CDS |
| TGGCATCATCAAGTTATAAT+TGG | 0.197242 | 1_1:-45336625 | Msa0023730:CDS |
| AGCTTCGCCGCCGCTGATTA+TGG | 0.223933 | 1_1:-45337169 | Msa0023730:CDS |
| TGCTTGTTTCAAACTTAAAA+AGG | 0.257923 | 1_1:-45337782 | Msa0023730:intron |
| ACAAGATAAACTCAGTATTA+AGG | 0.259065 | 1_1:-45338378 | Msa0023730:CDS |
| CGGAGATTTCCATTGGAAAA+AGG | 0.266811 | 1_1:-45338602 | Msa0023730:CDS |
| GTATTAAGGAAACATCTATT+TGG | 0.288262 | 1_1:-45338364 | Msa0023730:CDS |
| AGTAATTACCTGCATTGTTA+TGG | 0.296901 | 1_1:+45337143 | None:intergenic |
| GCTAAATACGAAACAGAAAA+TGG | 0.304037 | 1_1:-45338752 | Msa0023730:CDS |
| AGATTATGAGGCTTTCTATA+AGG | 0.304992 | 1_1:+45338500 | None:intergenic |
| TTCAGCGAGTGAAGTGTAAT+TGG | 0.310216 | 1_1:+45338692 | None:intergenic |
| CTTTGATTAACACCCTGATT+TGG | 0.319131 | 1_1:+45336944 | None:intergenic |
| GAACTACCCGACACCATATT+AGG | 0.324492 | 1_1:-45338668 | Msa0023730:CDS |
| GAGTACTATGATTCCAAATC+AGG | 0.335331 | 1_1:-45336957 | Msa0023730:CDS |
| TTGATGGACATATATAATTC+AGG | 0.341441 | 1_1:-45337094 | Msa0023730:CDS |
| AGAAGTGGTTTCTGATTTGA+TGG | 0.347106 | 1_1:-45337110 | Msa0023730:CDS |
| ATTGTTAAATTTGACATAAA+CGG | 0.348961 | 1_1:-45338788 | Msa0023730:CDS |
| GGTTTGGAAGGTTTATGTTT+TGG | 0.353709 | 1_1:-45338471 | Msa0023730:CDS |
| CAACTTCAACTATATCGAAT+TGG | 0.354077 | 1_1:+45337964 | None:intergenic |
| GATGCTCGTGGCTTCATCTA+TGG | 0.357885 | 1_1:-45338878 | Msa0023730:CDS |
| TTCCTAGTCTTATGAACATT+AGG | 0.362413 | 1_1:+45338425 | None:intergenic |
| GATTATGAGGCTTTCTATAA+GGG | 0.363151 | 1_1:+45338501 | None:intergenic |
| TTGTTAAATTTGACATAAAC+GGG | 0.366467 | 1_1:-45338787 | Msa0023730:CDS |
| CAAACCTTCTTCAGATTATG+AGG | 0.369249 | 1_1:+45338488 | None:intergenic |
| CTCCATGATTCTTTCCCTGT+TGG | 0.376931 | 1_1:+45338560 | None:intergenic |
| CCTCCACCATGGTGGCCAAC+AGG | 0.377036 | 1_1:-45338575 | Msa0023730:CDS |
| CTCATAATCTGAAGAAGGTT+TGG | 0.391254 | 1_1:-45338487 | Msa0023730:CDS |
| ATCATCGTCATCGTCGTATG+AGG | 0.393212 | 1_1:-45338156 | Msa0023730:CDS |
| AGTTATGATTCTCGTGTTGA+AGG | 0.407240 | 1_1:-45338281 | Msa0023730:CDS |
| CCAAAATATGCAGCATCAAA+TGG | 0.411899 | 1_1:-45336798 | Msa0023730:CDS |
| CACTTGCATGGTAGATTTGA+TGG | 0.428886 | 1_1:+45337002 | None:intergenic |
| TGAGAGAAGTGAACCTAATA+TGG | 0.432462 | 1_1:+45338655 | None:intergenic |
| AACATCCGATTGAGAATTGA+AGG | 0.434143 | 1_1:+45336667 | None:intergenic |
| CACTCATTGGTTTGCCCTCG+TGG | 0.436143 | 1_1:+45338846 | None:intergenic |
| CTACCATGCAAGTGTTCAAC+AGG | 0.437195 | 1_1:-45336993 | Msa0023730:CDS |
| GTTGCAACCATGTTCATAAC+TGG | 0.438691 | 1_1:+45336833 | None:intergenic |
| GTTGAGGCATTTGCTTGCAT+TGG | 0.441840 | 1_1:+45336695 | None:intergenic |
| ACATTAGCTACTTCAGCATT+AGG | 0.464999 | 1_1:+45336719 | None:intergenic |
| TACCGCAGCTTGCACACGTT+GGG | 0.467304 | 1_1:+45337905 | None:intergenic |
| GATAAGATCATTCATCATAC+AGG | 0.467684 | 1_1:-45337873 | Msa0023730:CDS |
| AACAACCTTCAATTCTCAAT+CGG | 0.467982 | 1_1:-45336672 | Msa0023730:CDS |
| TTGTCTGATGAACCACTCAT+TGG | 0.468990 | 1_1:+45338833 | None:intergenic |
| CCTGTTGGCCACCATGGTGG+AGG | 0.469951 | 1_1:+45338575 | None:intergenic |
| TGAATGATCTTATCTGCAAC+AGG | 0.473671 | 1_1:+45337882 | None:intergenic |
| TTTCTTGGTGGAATTCATGT+TGG | 0.474978 | 1_1:+45338042 | None:intergenic |
| CATCAGACAATTTACGAGGC+TGG | 0.493913 | 1_1:-45338820 | Msa0023730:CDS |
| ACAAATAATGACAAGTTGAA+TGG | 0.495226 | 1_1:-45338719 | Msa0023730:CDS |
| ATTCATCATACAGGTAATCA+TGG | 0.501308 | 1_1:-45337864 | Msa0023730:CDS |
| ACCATGTTCATAACTGGCAT+TGG | 0.505692 | 1_1:+45336839 | None:intergenic |
| TGATGCTTACAACAACTTTG+TGG | 0.507166 | 1_1:-45336645 | Msa0023730:CDS |
| GGCCAACAGGGAAAGAATCA+TGG | 0.513222 | 1_1:-45338562 | Msa0023730:CDS |
| AATGGAAATCTCCGTTGTGG+TGG | 0.514931 | 1_1:+45338611 | None:intergenic |
| AGTGAACCTAATATGGTGTC+GGG | 0.518068 | 1_1:+45338662 | None:intergenic |
| TCTTTCCCTGTTGGCCACCA+TGG | 0.518755 | 1_1:+45338569 | None:intergenic |
| ACTCATTGGTTTGCCCTCGT+GGG | 0.520053 | 1_1:+45338847 | None:intergenic |
| ACCACAACGGAGATTTCCAT+TGG | 0.522988 | 1_1:-45338609 | Msa0023730:CDS |
| AACAAGAGAAAACGTAAACT+TGG | 0.524798 | 1_1:-45338128 | Msa0023730:CDS |
| GCTTGCACACGTTGGGCAAG+AGG | 0.525430 | 1_1:+45337912 | None:intergenic |
| TTATGATTAACACCTGGAGT+TGG | 0.531466 | 1_1:+45337031 | None:intergenic |
| TAATCTGAAGAAGGTTTGGA+AGG | 0.542382 | 1_1:-45338483 | Msa0023730:CDS |
| TCTCCTGTTGAACACTTGCA+TGG | 0.543277 | 1_1:+45336990 | None:intergenic |
| ATGAGATTTAGTGAAGATCC+TGG | 0.545819 | 1_1:-45338530 | Msa0023730:CDS |
| TATGGATTCCATAACAATGC+AGG | 0.549065 | 1_1:-45337151 | Msa0023730:CDS |
| TTCCCTGTTGGCCACCATGG+TGG | 0.549900 | 1_1:+45338572 | None:intergenic |
| AAGTGAACCTAATATGGTGT+CGG | 0.558954 | 1_1:+45338661 | None:intergenic |
| TCATATACTAGATATGTGGC+TGG | 0.560363 | 1_1:+45337831 | None:intergenic |
| AAAGCCTCATAATCTGAAGA+AGG | 0.560995 | 1_1:-45338492 | Msa0023730:CDS |
| TCGTATTTAGCAATTGCCGC+TGG | 0.562404 | 1_1:+45338764 | None:intergenic |
| CTCATTGGTTTGCCCTCGTG+GGG | 0.563133 | 1_1:+45338848 | None:intergenic |
| CTCCACCATGGTGGCCAACA+GGG | 0.563459 | 1_1:-45338574 | Msa0023730:CDS |
| CATCATTGAAGTATTCATCA+TGG | 0.563846 | 1_1:+45336868 | None:intergenic |
| TCCAATGGAAATCTCCGTTG+TGG | 0.567968 | 1_1:+45338608 | None:intergenic |
| CATATCATATACTAGATATG+TGG | 0.568737 | 1_1:+45337827 | None:intergenic |
| GGAACATAGTCAGACAATCA+AGG | 0.573774 | 1_1:-45338406 | Msa0023730:CDS |
| TGCCCAACGTGTGCAAGCTG+CGG | 0.574797 | 1_1:-45337907 | Msa0023730:CDS |
| AACAATGCAGGTAATTACTC+AGG | 0.576216 | 1_1:-45337139 | Msa0023730:CDS |
| AGAATTGAAGGTTGTTGTTG+AGG | 0.577679 | 1_1:+45336679 | None:intergenic |
| GCAGGTAATTACTCAGGAGG+AGG | 0.589511 | 1_1:-45337133 | Msa0023730:CDS |
| AAGTAATTATGTGCTTGTTG+AGG | 0.589872 | 1_1:-45338258 | Msa0023730:CDS |
| ATTATGAGGCTTTCTATAAG+GGG | 0.590034 | 1_1:+45338502 | None:intergenic |
| AGTACTATGATTCCAAATCA+GGG | 0.594860 | 1_1:-45336956 | Msa0023730:CDS |
| TCATCGTCATCGTCGTATGA+GGG | 0.596584 | 1_1:-45338155 | Msa0023730:CDS |
| AGTACGATGATTCCAACTCC+AGG | 0.601419 | 1_1:-45337043 | Msa0023730:CDS |
| ATGGAAATCTCCGTTGTGGT+GGG | 0.614439 | 1_1:+45338612 | None:intergenic |
| CTCCTAATGTTCATAAGACT+AGG | 0.616148 | 1_1:-45338427 | Msa0023730:CDS |
| TTACTCAGGAGGAGGAGAAG+TGG | 0.624741 | 1_1:-45337125 | Msa0023730:CDS |
| CAGACAATTTACGAGGCTGG+TGG | 0.628174 | 1_1:-45338817 | Msa0023730:CDS |
| ATTTGACATAAACGGGCCAG+CGG | 0.631675 | 1_1:-45338780 | Msa0023730:CDS |
| TGGAATTCATGTTGGTCAAG+AGG | 0.631768 | 1_1:+45338050 | None:intergenic |
| CGTTGTGGTGGGTCACAATG+CGG | 0.634330 | 1_1:+45338623 | None:intergenic |
| CGCATTGTGACCCACCACAA+CGG | 0.638363 | 1_1:-45338622 | Msa0023730:CDS |
| GTACCGCAGCTTGCACACGT+TGG | 0.638406 | 1_1:+45337904 | None:intergenic |
| TTATGAGGCTTTCTATAAGG+GGG | 0.640626 | 1_1:+45338503 | None:intergenic |
| TCCAATGCCAGTTATGAACA+TGG | 0.642108 | 1_1:-45336840 | Msa0023730:CDS |
| TGGAATCATCGTACTCATGA+CGG | 0.645856 | 1_1:+45337051 | None:intergenic |
| GACGATGACGATGATGATGA+TGG | 0.648657 | 1_1:+45338164 | None:intergenic |
| ATGGAAGTTTGTGATGCTCG+TGG | 0.649462 | 1_1:-45338890 | Msa0023730:CDS |
| AATGCAGGTAATTACTCAGG+AGG | 0.654047 | 1_1:-45337136 | Msa0023730:CDS |
| CACGAGGGCAAACCAATGAG+TGG | 0.675933 | 1_1:-45338845 | Msa0023730:CDS |
| ATGGAATCCATAATCAGCGG+CGG | 0.694876 | 1_1:+45337162 | None:intergenic |
| CTATGGAGTAATACCCCACG+AGG | 0.701029 | 1_1:-45338861 | Msa0023730:CDS |
| GTTATGGAATCCATAATCAG+CGG | 0.702738 | 1_1:+45337159 | None:intergenic |
| TGCATGTTATGATTAACACC+TGG | 0.705952 | 1_1:+45337025 | None:intergenic |
| AAGGCATTCCTCCACCATGG+TGG | 0.706316 | 1_1:-45338583 | Msa0023730:CDS |
| GGTTCATCAGACAATTTACG+AGG | 0.727611 | 1_1:-45338824 | Msa0023730:CDS |
| CAACAGGGAAAGAATCATGG+AGG | 0.743204 | 1_1:-45338559 | Msa0023730:CDS |
| TATGGAGTAATACCCCACGA+GGG | 0.783328 | 1_1:-45338860 | Msa0023730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTTAAATTTGACATAAA+CGG | - | chr1_1:45336718-45336737 | Msa0023730:CDS | 15.0% |
| !!! | AAAGGTATTTTTATTTAACT+AGG | - | chr1_1:45337742-45337761 | Msa0023730:intron | 15.0% |
| !! | TATAATTCACAATTTGATTA+TGG | - | chr1_1:45337918-45337937 | Msa0023730:CDS | 15.0% |
| !! | CTATTTCATTATATATTACT+TGG | - | chr1_1:45338034-45338053 | Msa0023730:CDS | 15.0% |
| !! | ATTGTTAAATTTGACATAAA+CGG | - | chr1_1:45336718-45336737 | Msa0023730:CDS | 15.0% |
| !!! | AAAGGTATTTTTATTTAACT+AGG | - | chr1_1:45337742-45337761 | Msa0023730:intron | 15.0% |
| !! | TATAATTCACAATTTGATTA+TGG | - | chr1_1:45337918-45337937 | Msa0023730:CDS | 15.0% |
| !! | CTATTTCATTATATATTACT+TGG | - | chr1_1:45338034-45338053 | Msa0023730:CDS | 15.0% |
| !! | TTGTTAAATTTGACATAAAC+GGG | - | chr1_1:45336719-45336738 | Msa0023730:CDS | 20.0% |
| !!! | TATATGATATGTTAGCTTAT+AGG | - | chr1_1:45337691-45337710 | Msa0023730:intron | 20.0% |
| !! | TTTAAACCAACAAAATTGTT+TGG | + | chr1_1:45338065-45338084 | None:intergenic | 20.0% |
| !! | TTGTTAAATTTGACATAAAC+GGG | - | chr1_1:45336719-45336738 | Msa0023730:CDS | 20.0% |
| !!! | TATATGATATGTTAGCTTAT+AGG | - | chr1_1:45337691-45337710 | Msa0023730:intron | 20.0% |
| !! | TTTAAACCAACAAAATTGTT+TGG | + | chr1_1:45338065-45338084 | None:intergenic | 20.0% |
| !! | ACAAATAATGACAAGTTGAA+TGG | - | chr1_1:45336787-45336806 | Msa0023730:CDS | 25.0% |
| ! | ACAAGATAAACTCAGTATTA+AGG | - | chr1_1:45337128-45337147 | Msa0023730:CDS | 25.0% |
| ! | GTATTAAGGAAACATCTATT+TGG | - | chr1_1:45337142-45337161 | Msa0023730:CDS | 25.0% |
| ! | TCATAACTTGAGAAAAATTC+AGG | + | chr1_1:45337213-45337232 | None:intergenic | 25.0% |
| ! | CATATCATATACTAGATATG+TGG | + | chr1_1:45337682-45337701 | None:intergenic | 25.0% |
| ! | TGCTTGTTTCAAACTTAAAA+AGG | - | chr1_1:45337724-45337743 | Msa0023730:intron | 25.0% |
| !!! | AGCTAACATTATTTTTACGA+GGG | + | chr1_1:45338321-45338340 | None:intergenic | 25.0% |
| !!! | AAGCTAACATTATTTTTACG+AGG | + | chr1_1:45338322-45338341 | None:intergenic | 25.0% |
| !! | TTGATGGACATATATAATTC+AGG | - | chr1_1:45338412-45338431 | Msa0023730:CDS | 25.0% |
| !!! | TGCATATTTTGGTTAAATCT+GGG | + | chr1_1:45338700-45338719 | None:intergenic | 25.0% |
| !! | AAAATTTTCATGGCAATCAA+GGG | - | chr1_1:45338734-45338753 | Msa0023730:CDS | 25.0% |
| !! | ACAAATAATGACAAGTTGAA+TGG | - | chr1_1:45336787-45336806 | Msa0023730:CDS | 25.0% |
| ! | ACAAGATAAACTCAGTATTA+AGG | - | chr1_1:45337128-45337147 | Msa0023730:CDS | 25.0% |
| ! | GTATTAAGGAAACATCTATT+TGG | - | chr1_1:45337142-45337161 | Msa0023730:CDS | 25.0% |
| ! | TCATAACTTGAGAAAAATTC+AGG | + | chr1_1:45337213-45337232 | None:intergenic | 25.0% |
| ! | CATATCATATACTAGATATG+TGG | + | chr1_1:45337682-45337701 | None:intergenic | 25.0% |
| ! | TGCTTGTTTCAAACTTAAAA+AGG | - | chr1_1:45337724-45337743 | Msa0023730:intron | 25.0% |
| !!! | AGCTAACATTATTTTTACGA+GGG | + | chr1_1:45338321-45338340 | None:intergenic | 25.0% |
| !!! | AAGCTAACATTATTTTTACG+AGG | + | chr1_1:45338322-45338341 | None:intergenic | 25.0% |
| !! | TTGATGGACATATATAATTC+AGG | - | chr1_1:45338412-45338431 | Msa0023730:CDS | 25.0% |
| !!! | TGCATATTTTGGTTAAATCT+GGG | + | chr1_1:45338700-45338719 | None:intergenic | 25.0% |
| !! | AAAATTTTCATGGCAATCAA+GGG | - | chr1_1:45338734-45338753 | Msa0023730:CDS | 25.0% |
| GCTAAATACGAAACAGAAAA+TGG | - | chr1_1:45336754-45336773 | Msa0023730:CDS | 30.0% | |
| ATTATGAGGCTTTCTATAAG+GGG | + | chr1_1:45337007-45337026 | None:intergenic | 30.0% | |
| GATTATGAGGCTTTCTATAA+GGG | + | chr1_1:45337008-45337027 | None:intergenic | 30.0% | |
| AGATTATGAGGCTTTCTATA+AGG | + | chr1_1:45337009-45337028 | None:intergenic | 30.0% | |
| !! | TTCCTAGTCTTATGAACATT+AGG | + | chr1_1:45337084-45337103 | None:intergenic | 30.0% |
| ! | AAGTAATTATGTGCTTGTTG+AGG | - | chr1_1:45337248-45337267 | Msa0023730:intron | 30.0% |
| !! | GGTAAATGATTTTGATGTTG+TGG | - | chr1_1:45337269-45337288 | Msa0023730:intron | 30.0% |
| !! | AATGATTTTGATGTTGTGGA+AGG | - | chr1_1:45337273-45337292 | Msa0023730:intron | 30.0% |
| AACAAGAGAAAACGTAAACT+TGG | - | chr1_1:45337378-45337397 | Msa0023730:intron | 30.0% | |
| !!! | TGTTCCTCACATTTTTTTCT+TGG | + | chr1_1:45337482-45337501 | None:intergenic | 30.0% |
| CAACTTCAACTATATCGAAT+TGG | + | chr1_1:45337545-45337564 | None:intergenic | 30.0% | |
| GATAAGATCATTCATCATAC+AGG | - | chr1_1:45337633-45337652 | Msa0023730:intron | 30.0% | |
| ATTCATCATACAGGTAATCA+TGG | - | chr1_1:45337642-45337661 | Msa0023730:intron | 30.0% | |
| ! | CTAGGAAAATGTTAGCTTAT+AGG | - | chr1_1:45337760-45337779 | Msa0023730:intron | 30.0% |
| ! | TAGCTTATAGGTCTCAATTT+TGG | - | chr1_1:45337772-45337791 | Msa0023730:intron | 30.0% |
| !! | TGACTCATGCTTTAGAAAAT+AGG | - | chr1_1:45337892-45337911 | Msa0023730:CDS | 30.0% |
| TTCACAATTTGATTATGGTC+AGG | - | chr1_1:45337923-45337942 | Msa0023730:CDS | 30.0% | |
| TCACAATTTGATTATGGTCA+GGG | - | chr1_1:45337924-45337943 | Msa0023730:CDS | 30.0% | |
| !! | CCAGATTTATTTTTCTTCTG+GGG | + | chr1_1:45337986-45338005 | None:intergenic | 30.0% |
| !! | GCCAGATTTATTTTTCTTCT+GGG | + | chr1_1:45337987-45338006 | None:intergenic | 30.0% |
| !! | TGCCAGATTTATTTTTCTTC+TGG | + | chr1_1:45337988-45338007 | None:intergenic | 30.0% |
| !!! | CTAACATTATTTTTACGAGG+GGG | + | chr1_1:45338319-45338338 | None:intergenic | 30.0% |
| !!! | GCTAACATTATTTTTACGAG+GGG | + | chr1_1:45338320-45338339 | None:intergenic | 30.0% |
| AGTAATTACCTGCATTGTTA+TGG | + | chr1_1:45338366-45338385 | None:intergenic | 30.0% | |
| AGTACTATGATTCCAAATCA+GGG | - | chr1_1:45338550-45338569 | Msa0023730:CDS | 30.0% | |
| ! | CATCATTGAAGTATTCATCA+TGG | + | chr1_1:45338641-45338660 | None:intergenic | 30.0% |
| !!! | CTGCATATTTTGGTTAAATC+TGG | + | chr1_1:45338701-45338720 | None:intergenic | 30.0% |
| ! | CAAATGGACCAAAATTTTCA+TGG | - | chr1_1:45338724-45338743 | Msa0023730:CDS | 30.0% |
| ! | CTTGATTGCCATGAAAATTT+TGG | + | chr1_1:45338735-45338754 | None:intergenic | 30.0% |
| ! | CAAAATTTTCATGGCAATCA+AGG | - | chr1_1:45338733-45338752 | Msa0023730:CDS | 30.0% |
| ! | AAATTTTCATGGCAATCAAG+GGG | - | chr1_1:45338735-45338754 | Msa0023730:CDS | 30.0% |
| AACAACCTTCAATTCTCAAT+CGG | - | chr1_1:45338834-45338853 | Msa0023730:CDS | 30.0% | |
| TGGCATCATCAAGTTATAAT+TGG | - | chr1_1:45338881-45338900 | Msa0023730:CDS | 30.0% | |
| GCTAAATACGAAACAGAAAA+TGG | - | chr1_1:45336754-45336773 | Msa0023730:CDS | 30.0% | |
| ATTATGAGGCTTTCTATAAG+GGG | + | chr1_1:45337007-45337026 | None:intergenic | 30.0% | |
| GATTATGAGGCTTTCTATAA+GGG | + | chr1_1:45337008-45337027 | None:intergenic | 30.0% | |
| AGATTATGAGGCTTTCTATA+AGG | + | chr1_1:45337009-45337028 | None:intergenic | 30.0% | |
| !! | TTCCTAGTCTTATGAACATT+AGG | + | chr1_1:45337084-45337103 | None:intergenic | 30.0% |
| ! | AAGTAATTATGTGCTTGTTG+AGG | - | chr1_1:45337248-45337267 | Msa0023730:intron | 30.0% |
| !! | GGTAAATGATTTTGATGTTG+TGG | - | chr1_1:45337269-45337288 | Msa0023730:intron | 30.0% |
| !! | AATGATTTTGATGTTGTGGA+AGG | - | chr1_1:45337273-45337292 | Msa0023730:intron | 30.0% |
| AACAAGAGAAAACGTAAACT+TGG | - | chr1_1:45337378-45337397 | Msa0023730:intron | 30.0% | |
| !!! | TGTTCCTCACATTTTTTTCT+TGG | + | chr1_1:45337482-45337501 | None:intergenic | 30.0% |
| CAACTTCAACTATATCGAAT+TGG | + | chr1_1:45337545-45337564 | None:intergenic | 30.0% | |
| GATAAGATCATTCATCATAC+AGG | - | chr1_1:45337633-45337652 | Msa0023730:intron | 30.0% | |
| ATTCATCATACAGGTAATCA+TGG | - | chr1_1:45337642-45337661 | Msa0023730:intron | 30.0% | |
| ! | CTAGGAAAATGTTAGCTTAT+AGG | - | chr1_1:45337760-45337779 | Msa0023730:intron | 30.0% |
| ! | TAGCTTATAGGTCTCAATTT+TGG | - | chr1_1:45337772-45337791 | Msa0023730:intron | 30.0% |
| !! | TGACTCATGCTTTAGAAAAT+AGG | - | chr1_1:45337892-45337911 | Msa0023730:CDS | 30.0% |
| TTCACAATTTGATTATGGTC+AGG | - | chr1_1:45337923-45337942 | Msa0023730:CDS | 30.0% | |
| TCACAATTTGATTATGGTCA+GGG | - | chr1_1:45337924-45337943 | Msa0023730:CDS | 30.0% | |
| !! | CCAGATTTATTTTTCTTCTG+GGG | + | chr1_1:45337986-45338005 | None:intergenic | 30.0% |
| !! | GCCAGATTTATTTTTCTTCT+GGG | + | chr1_1:45337987-45338006 | None:intergenic | 30.0% |
| !! | TGCCAGATTTATTTTTCTTC+TGG | + | chr1_1:45337988-45338007 | None:intergenic | 30.0% |
| !!! | CTAACATTATTTTTACGAGG+GGG | + | chr1_1:45338319-45338338 | None:intergenic | 30.0% |
| !!! | GCTAACATTATTTTTACGAG+GGG | + | chr1_1:45338320-45338339 | None:intergenic | 30.0% |
| AGTAATTACCTGCATTGTTA+TGG | + | chr1_1:45338366-45338385 | None:intergenic | 30.0% | |
| AGTACTATGATTCCAAATCA+GGG | - | chr1_1:45338550-45338569 | Msa0023730:CDS | 30.0% | |
| ! | CATCATTGAAGTATTCATCA+TGG | + | chr1_1:45338641-45338660 | None:intergenic | 30.0% |
| !!! | CTGCATATTTTGGTTAAATC+TGG | + | chr1_1:45338701-45338720 | None:intergenic | 30.0% |
| ! | CAAATGGACCAAAATTTTCA+TGG | - | chr1_1:45338724-45338743 | Msa0023730:CDS | 30.0% |
| ! | CTTGATTGCCATGAAAATTT+TGG | + | chr1_1:45338735-45338754 | None:intergenic | 30.0% |
| ! | CAAAATTTTCATGGCAATCA+AGG | - | chr1_1:45338733-45338752 | Msa0023730:CDS | 30.0% |
| ! | AAATTTTCATGGCAATCAAG+GGG | - | chr1_1:45338735-45338754 | Msa0023730:CDS | 30.0% |
| AACAACCTTCAATTCTCAAT+CGG | - | chr1_1:45338834-45338853 | Msa0023730:CDS | 30.0% | |
| TGGCATCATCAAGTTATAAT+TGG | - | chr1_1:45338881-45338900 | Msa0023730:CDS | 30.0% | |
| AAGTGAACCTAATATGGTGT+CGG | + | chr1_1:45336848-45336867 | None:intergenic | 35.0% | |
| TGAGAGAAGTGAACCTAATA+TGG | + | chr1_1:45336854-45336873 | None:intergenic | 35.0% | |
| ATGAGATTTAGTGAAGATCC+TGG | - | chr1_1:45336976-45336995 | Msa0023730:CDS | 35.0% | |
| TTATGAGGCTTTCTATAAGG+GGG | + | chr1_1:45337006-45337025 | None:intergenic | 35.0% | |
| AAAGCCTCATAATCTGAAGA+AGG | - | chr1_1:45337014-45337033 | Msa0023730:CDS | 35.0% | |
| CAAACCTTCTTCAGATTATG+AGG | + | chr1_1:45337021-45337040 | None:intergenic | 35.0% | |
| CTCATAATCTGAAGAAGGTT+TGG | - | chr1_1:45337019-45337038 | Msa0023730:CDS | 35.0% | |
| TAATCTGAAGAAGGTTTGGA+AGG | - | chr1_1:45337023-45337042 | Msa0023730:CDS | 35.0% | |
| ! | GGTTTGGAAGGTTTATGTTT+TGG | - | chr1_1:45337035-45337054 | Msa0023730:CDS | 35.0% |
| CTCCTAATGTTCATAAGACT+AGG | - | chr1_1:45337079-45337098 | Msa0023730:CDS | 35.0% | |
| AGTTATGATTCTCGTGTTGA+AGG | - | chr1_1:45337225-45337244 | Msa0023730:intron | 35.0% | |
| TTTCTTGGTGGAATTCATGT+TGG | + | chr1_1:45337467-45337486 | None:intergenic | 35.0% | |
| TCCACCAAGAAAAAAATGTG+AGG | - | chr1_1:45337475-45337494 | Msa0023730:intron | 35.0% | |
| !!! | TCCTCACATTTTTTTCTTGG+TGG | + | chr1_1:45337479-45337498 | None:intergenic | 35.0% |
| !! | CATTTTACTAGCGCTGAAAT+AGG | - | chr1_1:45337507-45337526 | Msa0023730:intron | 35.0% |
| TGAATGATCTTATCTGCAAC+AGG | + | chr1_1:45337627-45337646 | None:intergenic | 35.0% | |
| TCATATACTAGATATGTGGC+TGG | + | chr1_1:45337678-45337697 | None:intergenic | 35.0% | |
| CACAATTTGATTATGGTCAG+GGG | - | chr1_1:45337925-45337944 | Msa0023730:CDS | 35.0% | |
| CCCCAGAAGAAAAATAAATC+TGG | - | chr1_1:45337983-45338002 | Msa0023730:CDS | 35.0% | |
| ! | GCTACTCCAAACAATTTTGT+TGG | - | chr1_1:45338056-45338075 | Msa0023730:CDS | 35.0% |
| GTTATGGAATCCATAATCAG+CGG | + | chr1_1:45338350-45338369 | None:intergenic | 35.0% | |
| TATGGATTCCATAACAATGC+AGG | - | chr1_1:45338355-45338374 | Msa0023730:CDS | 35.0% | |
| AACAATGCAGGTAATTACTC+AGG | - | chr1_1:45338367-45338386 | Msa0023730:CDS | 35.0% | |
| ! | AGAAGTGGTTTCTGATTTGA+TGG | - | chr1_1:45338396-45338415 | Msa0023730:CDS | 35.0% |
| TTATGATTAACACCTGGAGT+TGG | + | chr1_1:45338478-45338497 | None:intergenic | 35.0% | |
| TGCATGTTATGATTAACACC+TGG | + | chr1_1:45338484-45338503 | None:intergenic | 35.0% | |
| GAGTACTATGATTCCAAATC+AGG | - | chr1_1:45338549-45338568 | Msa0023730:CDS | 35.0% | |
| CTTTGATTAACACCCTGATT+TGG | + | chr1_1:45338565-45338584 | None:intergenic | 35.0% | |
| ! | CCATTTGATGCTGCATATTT+TGG | + | chr1_1:45338711-45338730 | None:intergenic | 35.0% |
| CCAAAATATGCAGCATCAAA+TGG | - | chr1_1:45338708-45338727 | Msa0023730:CDS | 35.0% | |
| ! | AATTTTCATGGCAATCAAGG+GGG | - | chr1_1:45338736-45338755 | Msa0023730:CDS | 35.0% |
| ACATTAGCTACTTCAGCATT+AGG | + | chr1_1:45338790-45338809 | None:intergenic | 35.0% | |
| ! | AGAATTGAAGGTTGTTGTTG+AGG | + | chr1_1:45338830-45338849 | None:intergenic | 35.0% |
| AACATCCGATTGAGAATTGA+AGG | + | chr1_1:45338842-45338861 | None:intergenic | 35.0% | |
| TGATGCTTACAACAACTTTG+TGG | - | chr1_1:45338861-45338880 | Msa0023730:CDS | 35.0% | |
| AAGTGAACCTAATATGGTGT+CGG | + | chr1_1:45336848-45336867 | None:intergenic | 35.0% | |
| TGAGAGAAGTGAACCTAATA+TGG | + | chr1_1:45336854-45336873 | None:intergenic | 35.0% | |
| ATGAGATTTAGTGAAGATCC+TGG | - | chr1_1:45336976-45336995 | Msa0023730:CDS | 35.0% | |
| TTATGAGGCTTTCTATAAGG+GGG | + | chr1_1:45337006-45337025 | None:intergenic | 35.0% | |
| AAAGCCTCATAATCTGAAGA+AGG | - | chr1_1:45337014-45337033 | Msa0023730:CDS | 35.0% | |
| CAAACCTTCTTCAGATTATG+AGG | + | chr1_1:45337021-45337040 | None:intergenic | 35.0% | |
| CTCATAATCTGAAGAAGGTT+TGG | - | chr1_1:45337019-45337038 | Msa0023730:CDS | 35.0% | |
| TAATCTGAAGAAGGTTTGGA+AGG | - | chr1_1:45337023-45337042 | Msa0023730:CDS | 35.0% | |
| ! | GGTTTGGAAGGTTTATGTTT+TGG | - | chr1_1:45337035-45337054 | Msa0023730:CDS | 35.0% |
| CTCCTAATGTTCATAAGACT+AGG | - | chr1_1:45337079-45337098 | Msa0023730:CDS | 35.0% | |
| AGTTATGATTCTCGTGTTGA+AGG | - | chr1_1:45337225-45337244 | Msa0023730:intron | 35.0% | |
| TTTCTTGGTGGAATTCATGT+TGG | + | chr1_1:45337467-45337486 | None:intergenic | 35.0% | |
| TCCACCAAGAAAAAAATGTG+AGG | - | chr1_1:45337475-45337494 | Msa0023730:intron | 35.0% | |
| !!! | TCCTCACATTTTTTTCTTGG+TGG | + | chr1_1:45337479-45337498 | None:intergenic | 35.0% |
| !! | CATTTTACTAGCGCTGAAAT+AGG | - | chr1_1:45337507-45337526 | Msa0023730:intron | 35.0% |
| TGAATGATCTTATCTGCAAC+AGG | + | chr1_1:45337627-45337646 | None:intergenic | 35.0% | |
| TCATATACTAGATATGTGGC+TGG | + | chr1_1:45337678-45337697 | None:intergenic | 35.0% | |
| CACAATTTGATTATGGTCAG+GGG | - | chr1_1:45337925-45337944 | Msa0023730:CDS | 35.0% | |
| CCCCAGAAGAAAAATAAATC+TGG | - | chr1_1:45337983-45338002 | Msa0023730:CDS | 35.0% | |
| ! | GCTACTCCAAACAATTTTGT+TGG | - | chr1_1:45338056-45338075 | Msa0023730:CDS | 35.0% |
| GTTATGGAATCCATAATCAG+CGG | + | chr1_1:45338350-45338369 | None:intergenic | 35.0% | |
| TATGGATTCCATAACAATGC+AGG | - | chr1_1:45338355-45338374 | Msa0023730:CDS | 35.0% | |
| AACAATGCAGGTAATTACTC+AGG | - | chr1_1:45338367-45338386 | Msa0023730:CDS | 35.0% | |
| ! | AGAAGTGGTTTCTGATTTGA+TGG | - | chr1_1:45338396-45338415 | Msa0023730:CDS | 35.0% |
| TTATGATTAACACCTGGAGT+TGG | + | chr1_1:45338478-45338497 | None:intergenic | 35.0% | |
| TGCATGTTATGATTAACACC+TGG | + | chr1_1:45338484-45338503 | None:intergenic | 35.0% | |
| GAGTACTATGATTCCAAATC+AGG | - | chr1_1:45338549-45338568 | Msa0023730:CDS | 35.0% | |
| CTTTGATTAACACCCTGATT+TGG | + | chr1_1:45338565-45338584 | None:intergenic | 35.0% | |
| ! | CCATTTGATGCTGCATATTT+TGG | + | chr1_1:45338711-45338730 | None:intergenic | 35.0% |
| CCAAAATATGCAGCATCAAA+TGG | - | chr1_1:45338708-45338727 | Msa0023730:CDS | 35.0% | |
| ! | AATTTTCATGGCAATCAAGG+GGG | - | chr1_1:45338736-45338755 | Msa0023730:CDS | 35.0% |
| ACATTAGCTACTTCAGCATT+AGG | + | chr1_1:45338790-45338809 | None:intergenic | 35.0% | |
| ! | AGAATTGAAGGTTGTTGTTG+AGG | + | chr1_1:45338830-45338849 | None:intergenic | 35.0% |
| AACATCCGATTGAGAATTGA+AGG | + | chr1_1:45338842-45338861 | None:intergenic | 35.0% | |
| TGATGCTTACAACAACTTTG+TGG | - | chr1_1:45338861-45338880 | Msa0023730:CDS | 35.0% | |
| TTGTCTGATGAACCACTCAT+TGG | + | chr1_1:45336676-45336695 | None:intergenic | 40.0% | |
| GGTTCATCAGACAATTTACG+AGG | - | chr1_1:45336682-45336701 | Msa0023730:CDS | 40.0% | |
| TTCAGCGAGTGAAGTGTAAT+TGG | + | chr1_1:45336817-45336836 | None:intergenic | 40.0% | |
| AGTGAACCTAATATGGTGTC+GGG | + | chr1_1:45336847-45336866 | None:intergenic | 40.0% | |
| CGGAGATTTCCATTGGAAAA+AGG | - | chr1_1:45336904-45336923 | Msa0023730:CDS | 40.0% | |
| !!! | GAAGGTTTATGTTTTGGCAG+CGG | - | chr1_1:45337041-45337060 | Msa0023730:CDS | 40.0% |
| GGAACATAGTCAGACAATCA+AGG | - | chr1_1:45337100-45337119 | Msa0023730:CDS | 40.0% | |
| !! | GATTTTGATGTTGTGGAAGG+TGG | - | chr1_1:45337276-45337295 | Msa0023730:intron | 40.0% |
| TGGAATTCATGTTGGTCAAG+AGG | + | chr1_1:45337459-45337478 | None:intergenic | 40.0% | |
| AATGCAGGTAATTACTCAGG+AGG | - | chr1_1:45338370-45338389 | Msa0023730:CDS | 40.0% | |
| TGGAATCATCGTACTCATGA+CGG | + | chr1_1:45338458-45338477 | None:intergenic | 40.0% | |
| CACTTGCATGGTAGATTTGA+TGG | + | chr1_1:45338507-45338526 | None:intergenic | 40.0% | |
| TCCAATGCCAGTTATGAACA+TGG | - | chr1_1:45338666-45338685 | Msa0023730:CDS | 40.0% | |
| ACCATGTTCATAACTGGCAT+TGG | + | chr1_1:45338670-45338689 | None:intergenic | 40.0% | |
| GTTGCAACCATGTTCATAAC+TGG | + | chr1_1:45338676-45338695 | None:intergenic | 40.0% | |
| TTGTCTGATGAACCACTCAT+TGG | + | chr1_1:45336676-45336695 | None:intergenic | 40.0% | |
| GGTTCATCAGACAATTTACG+AGG | - | chr1_1:45336682-45336701 | Msa0023730:CDS | 40.0% | |
| TTCAGCGAGTGAAGTGTAAT+TGG | + | chr1_1:45336817-45336836 | None:intergenic | 40.0% | |
| AGTGAACCTAATATGGTGTC+GGG | + | chr1_1:45336847-45336866 | None:intergenic | 40.0% | |
| CGGAGATTTCCATTGGAAAA+AGG | - | chr1_1:45336904-45336923 | Msa0023730:CDS | 40.0% | |
| !!! | GAAGGTTTATGTTTTGGCAG+CGG | - | chr1_1:45337041-45337060 | Msa0023730:CDS | 40.0% |
| GGAACATAGTCAGACAATCA+AGG | - | chr1_1:45337100-45337119 | Msa0023730:CDS | 40.0% | |
| !! | GATTTTGATGTTGTGGAAGG+TGG | - | chr1_1:45337276-45337295 | Msa0023730:intron | 40.0% |
| TGGAATTCATGTTGGTCAAG+AGG | + | chr1_1:45337459-45337478 | None:intergenic | 40.0% | |
| AATGCAGGTAATTACTCAGG+AGG | - | chr1_1:45338370-45338389 | Msa0023730:CDS | 40.0% | |
| TGGAATCATCGTACTCATGA+CGG | + | chr1_1:45338458-45338477 | None:intergenic | 40.0% | |
| CACTTGCATGGTAGATTTGA+TGG | + | chr1_1:45338507-45338526 | None:intergenic | 40.0% | |
| TCCAATGCCAGTTATGAACA+TGG | - | chr1_1:45338666-45338685 | Msa0023730:CDS | 40.0% | |
| ACCATGTTCATAACTGGCAT+TGG | + | chr1_1:45338670-45338689 | None:intergenic | 40.0% | |
| GTTGCAACCATGTTCATAAC+TGG | + | chr1_1:45338676-45338695 | None:intergenic | 40.0% | |
| ATGGAAGTTTGTGATGCTCG+TGG | - | chr1_1:45336616-45336635 | Msa0023730:CDS | 45.0% | |
| TATGGAGTAATACCCCACGA+GGG | - | chr1_1:45336646-45336665 | Msa0023730:CDS | 45.0% | |
| CATCAGACAATTTACGAGGC+TGG | - | chr1_1:45336686-45336705 | Msa0023730:CDS | 45.0% | |
| ATTTGACATAAACGGGCCAG+CGG | - | chr1_1:45336726-45336745 | Msa0023730:CDS | 45.0% | |
| TCGTATTTAGCAATTGCCGC+TGG | + | chr1_1:45336745-45336764 | None:intergenic | 45.0% | |
| GAACTACCCGACACCATATT+AGG | - | chr1_1:45336838-45336857 | Msa0023730:CDS | 45.0% | |
| ATGGAAATCTCCGTTGTGGT+GGG | + | chr1_1:45336897-45336916 | None:intergenic | 45.0% | |
| AATGGAAATCTCCGTTGTGG+TGG | + | chr1_1:45336898-45336917 | None:intergenic | 45.0% | |
| ACCACAACGGAGATTTCCAT+TGG | - | chr1_1:45336897-45336916 | Msa0023730:CDS | 45.0% | |
| TCCAATGGAAATCTCCGTTG+TGG | + | chr1_1:45336901-45336920 | None:intergenic | 45.0% | |
| ! | GGAGGAATGCCTTTTTCCAA+TGG | + | chr1_1:45336916-45336935 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTCCTCCACCA+TGG | - | chr1_1:45336920-45336939 | Msa0023730:CDS | 45.0% |
| CTCCATGATTCTTTCCCTGT+TGG | + | chr1_1:45336949-45336968 | None:intergenic | 45.0% | |
| CAACAGGGAAAGAATCATGG+AGG | - | chr1_1:45336947-45336966 | Msa0023730:CDS | 45.0% | |
| ! | GACGATGACGATGATGATGA+TGG | + | chr1_1:45337345-45337364 | None:intergenic | 45.0% |
| ATCATCGTCATCGTCGTATG+AGG | - | chr1_1:45337350-45337369 | Msa0023730:intron | 45.0% | |
| TCATCGTCATCGTCGTATGA+GGG | - | chr1_1:45337351-45337370 | Msa0023730:intron | 45.0% | |
| GCGAATCCCTTCACATCAAT+GGG | - | chr1_1:45337947-45337966 | Msa0023730:CDS | 45.0% | |
| CGAATCCCTTCACATCAATG+GGG | - | chr1_1:45337948-45337967 | Msa0023730:CDS | 45.0% | |
| TGCTACCCCATTGATGTGAA+GGG | + | chr1_1:45337956-45337975 | None:intergenic | 45.0% | |
| ATGCTACCCCATTGATGTGA+AGG | + | chr1_1:45337957-45337976 | None:intergenic | 45.0% | |
| TCACATCAATGGGGTAGCAT+TGG | - | chr1_1:45337957-45337976 | Msa0023730:CDS | 45.0% | |
| ATGGAATCCATAATCAGCGG+CGG | + | chr1_1:45338347-45338366 | None:intergenic | 45.0% | |
| AGTACGATGATTCCAACTCC+AGG | - | chr1_1:45338463-45338482 | Msa0023730:CDS | 45.0% | |
| CTACCATGCAAGTGTTCAAC+AGG | - | chr1_1:45338513-45338532 | Msa0023730:CDS | 45.0% | |
| TCTCCTGTTGAACACTTGCA+TGG | + | chr1_1:45338519-45338538 | None:intergenic | 45.0% | |
| ! | GTTGAGGCATTTGCTTGCAT+TGG | + | chr1_1:45338814-45338833 | None:intergenic | 45.0% |
| ATGGAAGTTTGTGATGCTCG+TGG | - | chr1_1:45336616-45336635 | Msa0023730:CDS | 45.0% | |
| TATGGAGTAATACCCCACGA+GGG | - | chr1_1:45336646-45336665 | Msa0023730:CDS | 45.0% | |
| CATCAGACAATTTACGAGGC+TGG | - | chr1_1:45336686-45336705 | Msa0023730:CDS | 45.0% | |
| ATTTGACATAAACGGGCCAG+CGG | - | chr1_1:45336726-45336745 | Msa0023730:CDS | 45.0% | |
| TCGTATTTAGCAATTGCCGC+TGG | + | chr1_1:45336745-45336764 | None:intergenic | 45.0% | |
| GAACTACCCGACACCATATT+AGG | - | chr1_1:45336838-45336857 | Msa0023730:CDS | 45.0% | |
| ATGGAAATCTCCGTTGTGGT+GGG | + | chr1_1:45336897-45336916 | None:intergenic | 45.0% | |
| AATGGAAATCTCCGTTGTGG+TGG | + | chr1_1:45336898-45336917 | None:intergenic | 45.0% | |
| ACCACAACGGAGATTTCCAT+TGG | - | chr1_1:45336897-45336916 | Msa0023730:CDS | 45.0% | |
| TCCAATGGAAATCTCCGTTG+TGG | + | chr1_1:45336901-45336920 | None:intergenic | 45.0% | |
| ! | GGAGGAATGCCTTTTTCCAA+TGG | + | chr1_1:45336916-45336935 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTCCTCCACCA+TGG | - | chr1_1:45336920-45336939 | Msa0023730:CDS | 45.0% |
| CTCCATGATTCTTTCCCTGT+TGG | + | chr1_1:45336949-45336968 | None:intergenic | 45.0% | |
| CAACAGGGAAAGAATCATGG+AGG | - | chr1_1:45336947-45336966 | Msa0023730:CDS | 45.0% | |
| ! | GACGATGACGATGATGATGA+TGG | + | chr1_1:45337345-45337364 | None:intergenic | 45.0% |
| ATCATCGTCATCGTCGTATG+AGG | - | chr1_1:45337350-45337369 | Msa0023730:intron | 45.0% | |
| TCATCGTCATCGTCGTATGA+GGG | - | chr1_1:45337351-45337370 | Msa0023730:intron | 45.0% | |
| GCGAATCCCTTCACATCAAT+GGG | - | chr1_1:45337947-45337966 | Msa0023730:CDS | 45.0% | |
| CGAATCCCTTCACATCAATG+GGG | - | chr1_1:45337948-45337967 | Msa0023730:CDS | 45.0% | |
| TGCTACCCCATTGATGTGAA+GGG | + | chr1_1:45337956-45337975 | None:intergenic | 45.0% | |
| ATGCTACCCCATTGATGTGA+AGG | + | chr1_1:45337957-45337976 | None:intergenic | 45.0% | |
| TCACATCAATGGGGTAGCAT+TGG | - | chr1_1:45337957-45337976 | Msa0023730:CDS | 45.0% | |
| ATGGAATCCATAATCAGCGG+CGG | + | chr1_1:45338347-45338366 | None:intergenic | 45.0% | |
| AGTACGATGATTCCAACTCC+AGG | - | chr1_1:45338463-45338482 | Msa0023730:CDS | 45.0% | |
| CTACCATGCAAGTGTTCAAC+AGG | - | chr1_1:45338513-45338532 | Msa0023730:CDS | 45.0% | |
| TCTCCTGTTGAACACTTGCA+TGG | + | chr1_1:45338519-45338538 | None:intergenic | 45.0% | |
| ! | GTTGAGGCATTTGCTTGCAT+TGG | + | chr1_1:45338814-45338833 | None:intergenic | 45.0% |
| GATGCTCGTGGCTTCATCTA+TGG | - | chr1_1:45336628-45336647 | Msa0023730:CDS | 50.0% | |
| CTATGGAGTAATACCCCACG+AGG | - | chr1_1:45336645-45336664 | Msa0023730:CDS | 50.0% | |
| !! | ACTCATTGGTTTGCCCTCGT+GGG | + | chr1_1:45336662-45336681 | None:intergenic | 50.0% |
| CAGACAATTTACGAGGCTGG+TGG | - | chr1_1:45336689-45336708 | Msa0023730:CDS | 50.0% | |
| GGCCAACAGGGAAAGAATCA+TGG | - | chr1_1:45336944-45336963 | Msa0023730:CDS | 50.0% | |
| TTTCTATAAGGGGGTAGGCC+AGG | + | chr1_1:45336997-45337016 | None:intergenic | 50.0% | |
| GAGGCTTTCTATAAGGGGGT+AGG | + | chr1_1:45337002-45337021 | None:intergenic | 50.0% | |
| GGCGAATCCCTTCACATCAA+TGG | - | chr1_1:45337946-45337965 | Msa0023730:CDS | 50.0% | |
| GCAGGTAATTACTCAGGAGG+AGG | - | chr1_1:45338373-45338392 | Msa0023730:CDS | 50.0% | |
| TTACTCAGGAGGAGGAGAAG+TGG | - | chr1_1:45338381-45338400 | Msa0023730:CDS | 50.0% | |
| GATGCTCGTGGCTTCATCTA+TGG | - | chr1_1:45336628-45336647 | Msa0023730:CDS | 50.0% | |
| CTATGGAGTAATACCCCACG+AGG | - | chr1_1:45336645-45336664 | Msa0023730:CDS | 50.0% | |
| !! | ACTCATTGGTTTGCCCTCGT+GGG | + | chr1_1:45336662-45336681 | None:intergenic | 50.0% |
| CAGACAATTTACGAGGCTGG+TGG | - | chr1_1:45336689-45336708 | Msa0023730:CDS | 50.0% | |
| GGCCAACAGGGAAAGAATCA+TGG | - | chr1_1:45336944-45336963 | Msa0023730:CDS | 50.0% | |
| TTTCTATAAGGGGGTAGGCC+AGG | + | chr1_1:45336997-45337016 | None:intergenic | 50.0% | |
| GAGGCTTTCTATAAGGGGGT+AGG | + | chr1_1:45337002-45337021 | None:intergenic | 50.0% | |
| GGCGAATCCCTTCACATCAA+TGG | - | chr1_1:45337946-45337965 | Msa0023730:CDS | 50.0% | |
| GCAGGTAATTACTCAGGAGG+AGG | - | chr1_1:45338373-45338392 | Msa0023730:CDS | 50.0% | |
| TTACTCAGGAGGAGGAGAAG+TGG | - | chr1_1:45338381-45338400 | Msa0023730:CDS | 50.0% | |
| !! | CTCATTGGTTTGCCCTCGTG+GGG | + | chr1_1:45336661-45336680 | None:intergenic | 55.0% |
| !! | CACTCATTGGTTTGCCCTCG+TGG | + | chr1_1:45336663-45336682 | None:intergenic | 55.0% |
| CACGAGGGCAAACCAATGAG+TGG | - | chr1_1:45336661-45336680 | Msa0023730:CDS | 55.0% | |
| !! | CGTTGTGGTGGGTCACAATG+CGG | + | chr1_1:45336886-45336905 | None:intergenic | 55.0% |
| CGCATTGTGACCCACCACAA+CGG | - | chr1_1:45336884-45336903 | Msa0023730:CDS | 55.0% | |
| ! | AAGGCATTCCTCCACCATGG+TGG | - | chr1_1:45336923-45336942 | Msa0023730:CDS | 55.0% |
| TCTTTCCCTGTTGGCCACCA+TGG | + | chr1_1:45336940-45336959 | None:intergenic | 55.0% | |
| TACCGCAGCTTGCACACGTT+GGG | + | chr1_1:45337604-45337623 | None:intergenic | 55.0% | |
| !! | CTCATTGGTTTGCCCTCGTG+GGG | + | chr1_1:45336661-45336680 | None:intergenic | 55.0% |
| !! | CACTCATTGGTTTGCCCTCG+TGG | + | chr1_1:45336663-45336682 | None:intergenic | 55.0% |
| CACGAGGGCAAACCAATGAG+TGG | - | chr1_1:45336661-45336680 | Msa0023730:CDS | 55.0% | |
| !! | CGTTGTGGTGGGTCACAATG+CGG | + | chr1_1:45336886-45336905 | None:intergenic | 55.0% |
| CGCATTGTGACCCACCACAA+CGG | - | chr1_1:45336884-45336903 | Msa0023730:CDS | 55.0% | |
| ! | AAGGCATTCCTCCACCATGG+TGG | - | chr1_1:45336923-45336942 | Msa0023730:CDS | 55.0% |
| TCTTTCCCTGTTGGCCACCA+TGG | + | chr1_1:45336940-45336959 | None:intergenic | 55.0% | |
| TACCGCAGCTTGCACACGTT+GGG | + | chr1_1:45337604-45337623 | None:intergenic | 55.0% | |
| CTCCACCATGGTGGCCAACA+GGG | - | chr1_1:45336932-45336951 | Msa0023730:CDS | 60.0% | |
| TTCCCTGTTGGCCACCATGG+TGG | + | chr1_1:45336937-45336956 | None:intergenic | 60.0% | |
| GCTTGCACACGTTGGGCAAG+AGG | + | chr1_1:45337597-45337616 | None:intergenic | 60.0% | |
| TGCCCAACGTGTGCAAGCTG+CGG | - | chr1_1:45337599-45337618 | Msa0023730:intron | 60.0% | |
| GTACCGCAGCTTGCACACGT+TGG | + | chr1_1:45337605-45337624 | None:intergenic | 60.0% | |
| ! | AGCTTCGCCGCCGCTGATTA+TGG | - | chr1_1:45338337-45338356 | Msa0023730:CDS | 60.0% |
| CTCCACCATGGTGGCCAACA+GGG | - | chr1_1:45336932-45336951 | Msa0023730:CDS | 60.0% | |
| TTCCCTGTTGGCCACCATGG+TGG | + | chr1_1:45336937-45336956 | None:intergenic | 60.0% | |
| GCTTGCACACGTTGGGCAAG+AGG | + | chr1_1:45337597-45337616 | None:intergenic | 60.0% | |
| TGCCCAACGTGTGCAAGCTG+CGG | - | chr1_1:45337599-45337618 | Msa0023730:intron | 60.0% | |
| GTACCGCAGCTTGCACACGT+TGG | + | chr1_1:45337605-45337624 | None:intergenic | 60.0% | |
| ! | AGCTTCGCCGCCGCTGATTA+TGG | - | chr1_1:45338337-45338356 | Msa0023730:CDS | 60.0% |
| CCTGTTGGCCACCATGGTGG+AGG | + | chr1_1:45336934-45336953 | None:intergenic | 65.0% | |
| CCTCCACCATGGTGGCCAAC+AGG | - | chr1_1:45336931-45336950 | Msa0023730:CDS | 65.0% | |
| CCTGTTGGCCACCATGGTGG+AGG | + | chr1_1:45336934-45336953 | None:intergenic | 65.0% | |
| CCTCCACCATGGTGGCCAAC+AGG | - | chr1_1:45336931-45336950 | Msa0023730:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 45336616 | 45338912 | 45336616 | ID=Msa0023730;Name=Msa0023730 |
| chr1_1 | mRNA | 45336616 | 45338912 | 45336616 | ID=Msa0023730-mRNA-1;Parent=Msa0023730;Name=Msa0023730-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|1|1|2|0|567 |
| chr1_1 | exon | 45337783 | 45338912 | 45337783 | ID=Msa0023730-mRNA-1:exon:12962;Parent=Msa0023730-mRNA-1 |
| chr1_1 | exon | 45336616 | 45337189 | 45336616 | ID=Msa0023730-mRNA-1:exon:12961;Parent=Msa0023730-mRNA-1 |
| chr1_1 | CDS | 45337783 | 45338912 | 45337783 | ID=Msa0023730-mRNA-1:cds;Parent=Msa0023730-mRNA-1 |
| chr1_1 | CDS | 45336616 | 45337189 | 45336616 | ID=Msa0023730-mRNA-1:cds;Parent=Msa0023730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
