Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023740 | sp|Q9SLH0|EIL1_ARATH | 55.472 | 265 | 111 | 1 | 29 | 286 | 43 | 307 | 1.26e-102 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0023740 | TF | EIL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023740 | MtrunA17_Chr6g0476301 | 90.698 | 215 | 20 | 0 | 83 | 297 | 1 | 215 | 3.00e-146 | 431 |
| Msa0023740 | MtrunA17_Chr6g0476301 | 74.138 | 58 | 15 | 0 | 298 | 355 | 308 | 365 | 1.85e-18 | 88.2 |
| Msa0023740 | MtrunA17_Chr6g0476291 | 89.767 | 215 | 22 | 0 | 83 | 297 | 1 | 215 | 1.99e-145 | 425 |
| Msa0023740 | MtrunA17_Chr6g0473191 | 90.233 | 215 | 21 | 0 | 83 | 297 | 1 | 215 | 4.18e-145 | 425 |
| Msa0023740 | MtrunA17_Chr5g0440591 | 49.390 | 328 | 137 | 6 | 29 | 333 | 43 | 364 | 7.57e-105 | 332 |
| Msa0023740 | MtrunA17_Chr3g0118361 | 55.263 | 266 | 108 | 3 | 34 | 291 | 51 | 313 | 5.82e-103 | 328 |
| Msa0023740 | MtrunA17_Chr3g0080401 | 62.621 | 206 | 76 | 1 | 83 | 288 | 1 | 205 | 8.06e-92 | 289 |
| Msa0023740 | MtrunA17_Chr2g0329151 | 52.290 | 262 | 114 | 3 | 29 | 282 | 32 | 290 | 5.79e-91 | 296 |
| Msa0023740 | MtrunA17_Chr3g0124291 | 48.450 | 258 | 111 | 6 | 35 | 279 | 32 | 280 | 6.78e-81 | 263 |
| Msa0023740 | MtrunA17_Chr8g0382561 | 47.510 | 261 | 130 | 4 | 25 | 279 | 12 | 271 | 2.52e-74 | 247 |
| Msa0023740 | MtrunA17_Chr7g0260281 | 34.188 | 117 | 67 | 2 | 77 | 185 | 6 | 120 | 5.94e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023740 | AT2G27050.1 | 55.472 | 265 | 111 | 1 | 29 | 286 | 43 | 307 | 1.28e-103 | 328 |
| Msa0023740 | AT3G20770.1 | 54.887 | 266 | 109 | 3 | 29 | 286 | 43 | 305 | 2.21e-101 | 324 |
| Msa0023740 | AT5G10120.1 | 49.615 | 260 | 123 | 3 | 28 | 279 | 16 | 275 | 3.32e-87 | 282 |
| Msa0023740 | AT1G73730.1 | 49.259 | 270 | 124 | 3 | 18 | 279 | 21 | 285 | 1.27e-86 | 283 |
| Msa0023740 | AT1G73730.2 | 49.259 | 270 | 124 | 3 | 18 | 279 | 9 | 273 | 1.36e-86 | 283 |
| Msa0023740 | AT5G65100.1 | 45.324 | 278 | 126 | 3 | 30 | 283 | 33 | 308 | 3.86e-78 | 261 |
| Msa0023740 | AT5G21120.2 | 45.098 | 255 | 129 | 4 | 40 | 283 | 60 | 314 | 5.37e-69 | 235 |
| Msa0023740 | AT5G21120.3 | 45.098 | 255 | 129 | 4 | 40 | 283 | 53 | 307 | 7.31e-69 | 234 |
| Msa0023740 | AT5G21120.1 | 45.098 | 255 | 129 | 4 | 40 | 283 | 53 | 307 | 7.31e-69 | 234 |
Find 140 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGATGCTGCATATTT+TGG | 0.183879 | 1_1:-45406271 | None:intergenic |
| CTTGATGGCCATGAAAATTT+TGG | 0.189175 | 1_1:-45406295 | None:intergenic |
| AGACTTGAGGCTGGAAGTTT+TGG | 0.249325 | 1_1:-45408726 | None:intergenic |
| ACAAGATAAACTCAGTATTA+AGG | 0.259065 | 1_1:+45404677 | Msa0023740:CDS |
| CGGAGATTTCCATTGGAAAA+AGG | 0.266811 | 1_1:+45404453 | Msa0023740:CDS |
| AATGCTGCTAAGAAAGTTAA+AGG | 0.267746 | 1_1:+45403468 | Msa0023740:CDS |
| GTATTAAGGAAACATCTATT+TGG | 0.288262 | 1_1:+45404691 | Msa0023740:CDS |
| CCATTTGAGGCTGCATGTTT+TGG | 0.297794 | 1_1:-45408984 | None:intergenic |
| TTCACCGGTTGAACACTTCT+AGG | 0.304801 | 1_1:-45408751 | None:intergenic |
| AACAATGCAAAACAAGAAAA+AGG | 0.304941 | 1_1:+45403391 | Msa0023740:CDS |
| TCTAAATACGAAACAGAAAA+TGG | 0.309146 | 1_1:+45404303 | Msa0023740:CDS |
| TTCAGCGAGTGAAGTGTAAT+TGG | 0.310216 | 1_1:-45404363 | None:intergenic |
| CTTTGATTAACACCCTGATT+TGG | 0.319131 | 1_1:-45406125 | None:intergenic |
| GAACTACCCGACACCATATT+AGG | 0.324492 | 1_1:+45404387 | Msa0023740:CDS |
| CTTGTTGCGCATAGAAATTT+TGG | 0.328106 | 1_1:-45409008 | None:intergenic |
| GAGTACTATGATTCCAAATC+AGG | 0.335331 | 1_1:+45406112 | Msa0023740:CDS |
| CAATCTGATGTTGATGCTTA+AGG | 0.336538 | 1_1:+45409159 | Msa0023740:CDS |
| AGAAGTGGTTTCTGATTTGA+TGG | 0.346406 | 1_1:+45408612 | Msa0023740:CDS |
| CAACTTCAACCATTTCGAAT+TGG | 0.349417 | 1_1:-45405091 | None:intergenic |
| GGTTTGGAAGGTTTATGTTT+TGG | 0.353709 | 1_1:+45404584 | Msa0023740:CDS |
| ATAGTTAAATTTGACATAAA+CGG | 0.356609 | 1_1:+45404267 | Msa0023740:CDS |
| GATGCTCGTGGCTTCATCTA+TGG | 0.357885 | 1_1:+45404177 | Msa0023740:CDS |
| TTCCTAATCTTATGAACATT+AGG | 0.362413 | 1_1:-45404630 | None:intergenic |
| GTTGAGACATTTGCATGTAT+TGG | 0.366690 | 1_1:-45409090 | None:intergenic |
| CAAACCTTCTTCAGATTATG+AGG | 0.369249 | 1_1:-45404567 | None:intergenic |
| GTGCACAAGAACACATATTA+AGG | 0.370390 | 1_1:+45403554 | Msa0023740:CDS |
| CTCCATGATTCTTTCCCTGT+TGG | 0.376931 | 1_1:-45404495 | None:intergenic |
| CCTCCACCATGGTGGCCAAC+AGG | 0.377036 | 1_1:+45404480 | Msa0023740:CDS |
| TAGTTAAATTTGACATAAAC+GGG | 0.385553 | 1_1:+45404268 | Msa0023740:CDS |
| CTCATAATCTGAAGAAGGTT+TGG | 0.391254 | 1_1:+45404568 | Msa0023740:CDS |
| CACTTGCATGGTAGATTTGA+TGG | 0.391726 | 1_1:-45406067 | None:intergenic |
| AGCTTCATACAATGCAAATC+AGG | 0.396876 | 1_1:+45408568 | Msa0023740:CDS |
| AACATCAGATTGAGAATTGA+AGG | 0.406687 | 1_1:-45406402 | None:intergenic |
| AGTTATGATTCTCGTGTTGA+AGG | 0.407240 | 1_1:+45404774 | Msa0023740:CDS |
| CCAAAATATGCAGCATCAAA+TGG | 0.411899 | 1_1:+45406271 | Msa0023740:CDS |
| CCAAAACATGCAGCCTCAAA+TGG | 0.412132 | 1_1:+45408984 | Msa0023740:CDS |
| TGGTGTTGCTATTCTGTTGT+TGG | 0.417167 | 1_1:-45408909 | None:intergenic |
| TGAGAGAAGTGAACCTAATA+TGG | 0.432462 | 1_1:-45404400 | None:intergenic |
| AACATTATTCCAACTCCTCT+TGG | 0.432991 | 1_1:+45408697 | Msa0023740:CDS |
| CACTCATTGGTTTGCCCTCG+TGG | 0.436143 | 1_1:-45404209 | None:intergenic |
| CTACCATGCAAGTGTTCAAC+AGG | 0.437195 | 1_1:+45406076 | Msa0023740:CDS |
| GTTGCAACCATGTTCATAAC+TGG | 0.438691 | 1_1:-45406236 | None:intergenic |
| GTTGAGGCATTTGCTTGCAT+TGG | 0.441840 | 1_1:-45406374 | None:intergenic |
| TTGAAGTTTCCCCTCTTGAA+TGG | 0.446304 | 1_1:-45403369 | None:intergenic |
| TGGATAACACCAAGAGGAGT+TGG | 0.452835 | 1_1:-45408706 | None:intergenic |
| ATGAACATGGTTGCTTCTCC+CGG | 0.455619 | 1_1:+45408955 | Msa0023740:CDS |
| CAACACCGACATGAGTGCTT+TGG | 0.463783 | 1_1:+45408777 | Msa0023740:CDS |
| ACATTAGCTACTTCAGCATT+AGG | 0.464999 | 1_1:-45406350 | None:intergenic |
| TACCGCAGCTTGCACACGTT+GGG | 0.467304 | 1_1:-45405150 | None:intergenic |
| GATAAGATCATTCATCATAC+AGG | 0.467684 | 1_1:+45405182 | Msa0023740:CDS |
| TTGTCTGATGAACCACTCAT+TGG | 0.468990 | 1_1:-45404222 | None:intergenic |
| CCTGTTGGCCACCATGGTGG+AGG | 0.469951 | 1_1:-45404480 | None:intergenic |
| TGCAAATCAGGAGGAGGAGG+AGG | 0.470893 | 1_1:+45408580 | Msa0023740:CDS |
| ATGTCGGTGTTGTTCTTCAC+CGG | 0.471775 | 1_1:-45408766 | None:intergenic |
| TGAATGATCTTATCTGCAAC+AGG | 0.473671 | 1_1:-45405173 | None:intergenic |
| CTCCTAATGTTCATAAGATT+AGG | 0.475251 | 1_1:+45404628 | Msa0023740:CDS |
| TTTCTATAAGCGGGTAGGCC+AGG | 0.476414 | 1_1:-45404543 | None:intergenic |
| ATGTATTGGAACGTATGTTT+TGG | 0.479554 | 1_1:-45409076 | None:intergenic |
| AGGAGGAGGAGGAGAAGAAG+TGG | 0.483757 | 1_1:+45408597 | Msa0023740:CDS |
| CAGGTACATGTTAATGATGA+TGG | 0.486249 | 1_1:+45404146 | Msa0023740:intron |
| CAGCAACAACCAATTCGAAA+TGG | 0.489165 | 1_1:+45405082 | Msa0023740:CDS |
| CATCAGACAATTTACGAGGC+TGG | 0.493913 | 1_1:+45404235 | Msa0023740:CDS |
| ACAAATTATGACAAGTTGAA+TGG | 0.495226 | 1_1:+45404336 | Msa0023740:CDS |
| GATAGCACCATTATGAACTC+TGG | 0.501076 | 1_1:-45403341 | None:intergenic |
| CTACCCTAGAAGTGTTCAAC+CGG | 0.502133 | 1_1:+45408747 | Msa0023740:CDS |
| GAAGCAACCATGTTCATCAT+TGG | 0.503225 | 1_1:-45408949 | None:intergenic |
| ACCATGTTCATAACTGGCAT+TGG | 0.505692 | 1_1:-45406230 | None:intergenic |
| AAGAGACAATATTATATCAC+TGG | 0.506994 | 1_1:+45403504 | Msa0023740:CDS |
| TGATGCTTACAACAACTTTG+TGG | 0.507166 | 1_1:+45406424 | Msa0023740:CDS |
| CAAAATTTCTATGCGCAACA+AGG | 0.507343 | 1_1:+45409009 | Msa0023740:CDS |
| GGCCAACAGGGAAAGAATCA+TGG | 0.513222 | 1_1:+45404493 | Msa0023740:CDS |
| TTATGAGGCTTTCTATAAGC+GGG | 0.514268 | 1_1:-45404552 | None:intergenic |
| AGTGAACCTAATATGGTGTC+GGG | 0.518068 | 1_1:-45404393 | None:intergenic |
| TCTTTCCCTGTTGGCCACCA+TGG | 0.518755 | 1_1:-45404486 | None:intergenic |
| ACTCATTGGTTTGCCCTCGT+GGG | 0.520053 | 1_1:-45404208 | None:intergenic |
| ACCACAACGGAGATTTCCAT+TGG | 0.522988 | 1_1:+45404446 | Msa0023740:CDS |
| ATGTATCCCAGAGTTCATAA+TGG | 0.523895 | 1_1:+45403334 | Msa0023740:CDS |
| TCACCGGTTGAACACTTCTA+GGG | 0.524204 | 1_1:-45408750 | None:intergenic |
| GCTTGCACACGTTGGGCAAG+AGG | 0.525430 | 1_1:-45405143 | None:intergenic |
| TTATGATTAACACCGGGAGT+TGG | 0.525458 | 1_1:-45406038 | None:intergenic |
| TGGCATTGAAGTATTCATCA+TGG | 0.535168 | 1_1:-45408929 | None:intergenic |
| ATATTATATCACTGGAACAA+AGG | 0.540439 | 1_1:+45403512 | Msa0023740:CDS |
| TAATCTGAAGAAGGTTTGGA+AGG | 0.542382 | 1_1:+45404572 | Msa0023740:CDS |
| TCTCCTGTTGAACACTTGCA+TGG | 0.543277 | 1_1:-45406079 | None:intergenic |
| GGAGTTGGAATAATGTTGGC+AGG | 0.543540 | 1_1:-45408691 | None:intergenic |
| ATGAGATTTAGTGAAGATCC+TGG | 0.545819 | 1_1:+45404525 | Msa0023740:CDS |
| CAATGCAAATCAGGAGGAGG+AGG | 0.547830 | 1_1:+45408577 | Msa0023740:CDS |
| TTCCCTGTTGGCCACCATGG+TGG | 0.549900 | 1_1:-45404483 | None:intergenic |
| AAGTGAACCTAATATGGTGT+CGG | 0.558954 | 1_1:-45404394 | None:intergenic |
| ATGATCAAAAGATGAATCAA+AGG | 0.559551 | 1_1:-45409118 | None:intergenic |
| AAAGCCTCATAATCTGAAGA+AGG | 0.560995 | 1_1:+45404563 | Msa0023740:CDS |
| GGAACATAGTCAGACAATCA+AGG | 0.561355 | 1_1:+45404649 | Msa0023740:CDS |
| GTTCATGTTATGATTAACAC+CGG | 0.561642 | 1_1:-45406045 | None:intergenic |
| CTCATTGGTTTGCCCTCGTG+GGG | 0.563133 | 1_1:-45404207 | None:intergenic |
| ACAAAGGAAAAGAAAGACAT+TGG | 0.563170 | 1_1:+45403528 | Msa0023740:CDS |
| CTCCACCATGGTGGCCAACA+GGG | 0.563459 | 1_1:+45404481 | Msa0023740:CDS |
| AGTGCTTTGGTTCCAAATCA+CGG | 0.563884 | 1_1:+45408790 | Msa0023740:CDS |
| TCCAATGGAAATCTCCGTTG+TGG | 0.567968 | 1_1:-45404447 | None:intergenic |
| AAGAGGAGTTGGAATAATGT+TGG | 0.573764 | 1_1:-45408695 | None:intergenic |
| TGCCCAACGTGTGCAAGCTG+CGG | 0.574797 | 1_1:+45405148 | Msa0023740:CDS |
| AGAATTGAAGGTTGTTGTTG+AGG | 0.577679 | 1_1:-45406390 | None:intergenic |
| AGGCGACACAACATTTATGT+TGG | 0.580944 | 1_1:-45408671 | None:intergenic |
| AATGGAAATCTCCGTTGTGG+TGG | 0.581303 | 1_1:-45404444 | None:intergenic |
| TTCTAGGGTAGACTTGAGGC+TGG | 0.585018 | 1_1:-45408735 | None:intergenic |
| ATAGCACCATTATGAACTCT+GGG | 0.587051 | 1_1:-45403340 | None:intergenic |
| TGGTCGAGACATTAGGCACT+TGG | 0.588551 | 1_1:-45409056 | None:intergenic |
| AGTACTATGATTCCAAATCA+GGG | 0.594860 | 1_1:+45406113 | Msa0023740:CDS |
| TCGTATTTAGAAATTGCCGC+TGG | 0.597921 | 1_1:-45404291 | None:intergenic |
| AAATTTCTATGCGCAACAAG+GGG | 0.601367 | 1_1:+45409011 | Msa0023740:CDS |
| AAAATTTCTATGCGCAACAA+GGG | 0.602179 | 1_1:+45409010 | Msa0023740:CDS |
| GTTAACTATTGAGGAACTAG+AGG | 0.610445 | 1_1:+45403426 | Msa0023740:CDS |
| ATACAATGCAAATCAGGAGG+AGG | 0.612788 | 1_1:+45408574 | Msa0023740:CDS |
| AGTACGATGATTCCAACTCC+CGG | 0.614991 | 1_1:+45406026 | Msa0023740:CDS |
| ATTATGAGGCTTTCTATAAG+CGG | 0.620975 | 1_1:-45404553 | None:intergenic |
| CAGACAATTTACGAGGCTGG+TGG | 0.628174 | 1_1:+45404238 | Msa0023740:CDS |
| GAGGCTTTCTATAAGCGGGT+AGG | 0.631213 | 1_1:-45404548 | None:intergenic |
| ATTTGACATAAACGGGCCAG+CGG | 0.631675 | 1_1:+45404275 | Msa0023740:CDS |
| GTACCGCAGCTTGCACACGT+TGG | 0.638406 | 1_1:-45405151 | None:intergenic |
| GCTATCGCTAACCATTCAAG+AGG | 0.639976 | 1_1:+45403358 | Msa0023740:CDS |
| TCCAATGCCAGTTATGAACA+TGG | 0.642108 | 1_1:+45406229 | Msa0023740:CDS |
| TGGAATCATCGTACTCATGA+CGG | 0.645856 | 1_1:-45406018 | None:intergenic |
| CTATCGCTAACCATTCAAGA+GGG | 0.648395 | 1_1:+45403359 | Msa0023740:CDS |
| ATGGAAGTTTGTGATGCTCG+TGG | 0.649462 | 1_1:+45404165 | Msa0023740:CDS |
| CGCATTGTGATCCACCACAA+CGG | 0.651211 | 1_1:+45404433 | Msa0023740:CDS |
| TTCATACAATGCAAATCAGG+AGG | 0.653342 | 1_1:+45408571 | Msa0023740:CDS |
| AGGAGTTGGAACCATAGTGA+TGG | 0.659721 | 1_1:-45408839 | None:intergenic |
| ACACTTAAAGTGTAGACTTG+AGG | 0.670391 | 1_1:-45408883 | None:intergenic |
| TTCATGTTATGATTAACACC+GGG | 0.672590 | 1_1:-45406044 | None:intergenic |
| CACGAGGGCAAACCAATGAG+TGG | 0.675933 | 1_1:+45404210 | Msa0023740:CDS |
| TGGAACCAAAGCACTCATGT+CGG | 0.678657 | 1_1:-45408782 | None:intergenic |
| CGTTGTGGTGGATCACAATG+CGG | 0.679871 | 1_1:-45404432 | None:intergenic |
| ACACTTCTAGGGTAGACTTG+AGG | 0.684579 | 1_1:-45408739 | None:intergenic |
| CTATGGAGTAATACCCCACG+AGG | 0.701029 | 1_1:+45404194 | Msa0023740:CDS |
| AAGGCATTCCTCCACCATGG+TGG | 0.706316 | 1_1:+45404472 | Msa0023740:CDS |
| TTCAATGCCAATGATGAACA+TGG | 0.707591 | 1_1:+45408942 | Msa0023740:CDS |
| AATTTCTATGCGCAACAAGG+GGG | 0.709305 | 1_1:+45409012 | Msa0023740:CDS |
| TATCGCTAACCATTCAAGAG+GGG | 0.726590 | 1_1:+45403360 | Msa0023740:CDS |
| GGTTCATCAGACAATTTACG+AGG | 0.727611 | 1_1:+45404231 | Msa0023740:CDS |
| CAACAGGGAAAGAATCATGG+AGG | 0.743204 | 1_1:+45404496 | Msa0023740:CDS |
| TATGGAGTAATACCCCACGA+GGG | 0.783328 | 1_1:+45404195 | Msa0023740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTCACAATTTAATTA+TGG | + | chr1_1:45405473-45405492 | Msa0023740:intron | 10.0% |
| !!! | TTTTATTTTTTCTATGTATT+TGG | + | chr1_1:45405853-45405872 | Msa0023740:intron | 10.0% |
| !!! | TAAAATAATGTTATTTTCTT+TGG | + | chr1_1:45407075-45407094 | Msa0023740:intron | 10.0% |
| !!! | ATAAATATTTTTAAAAGGTA+GGG | - | chr1_1:45407399-45407418 | None:intergenic | 10.0% |
| !!! | TATAAATATTTTTAAAAGGT+AGG | - | chr1_1:45407400-45407419 | None:intergenic | 10.0% |
| !! | TAAAAATATTTATAAAGAAG+TGG | + | chr1_1:45407406-45407425 | Msa0023740:intron | 10.0% |
| !!! | TGTTTTTTTTTTTTTGTTAT+TGG | + | chr1_1:45407759-45407778 | Msa0023740:intron | 10.0% |
| !!! | TATTTTTTGTTTGATTATTA+AGG | + | chr1_1:45407893-45407912 | Msa0023740:intron | 10.0% |
| !!! | ACCTTATTTTTATTTTAACT+AGG | + | chr1_1:45403582-45403601 | Msa0023740:intron | 15.0% |
| !! | TCCTAGTTAAAATAAAAATA+AGG | - | chr1_1:45403586-45403605 | None:intergenic | 15.0% |
| !! | AAAATTTCAACCTAATTATT+TGG | - | chr1_1:45403959-45403978 | None:intergenic | 15.0% |
| !! | ATAGTTAAATTTGACATAAA+CGG | + | chr1_1:45404267-45404286 | Msa0023740:CDS | 15.0% |
| !!! | AAAGGTATTTTTATTTAACT+AGG | + | chr1_1:45405291-45405310 | Msa0023740:intron | 15.0% |
| !! | CTATTTCATTATATATTACT+TGG | + | chr1_1:45405587-45405606 | Msa0023740:intron | 15.0% |
| !!! | TTTATTTTAAACGGTAAAAT+AGG | - | chr1_1:45406882-45406901 | None:intergenic | 15.0% |
| !!! | GAGATTGATTTTATTTTAAA+CGG | - | chr1_1:45406891-45406910 | None:intergenic | 15.0% |
| !!! | TTTATTTTAAACGGTAAAAT+AGG | - | chr1_1:45406882-45406901 | None:intergenic | 15.0% |
| !!! | GAGATTGATTTTATTTTAAA+CGG | - | chr1_1:45406891-45406910 | None:intergenic | 15.0% |
| !! | AAAGACAAAATAATAAAGAA+AGG | + | chr1_1:45407019-45407038 | Msa0023740:intron | 15.0% |
| !! | CAAACTAGTATTATTAATAA+CGG | - | chr1_1:45407348-45407367 | None:intergenic | 15.0% |
| !!! | TAAATATTTTTAAAAGGTAG+GGG | - | chr1_1:45407398-45407417 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTGTTATTGG+TGG | + | chr1_1:45407762-45407781 | Msa0023740:intron | 15.0% |
| !! | AATTCAAATCTCATTTAAAG+CGG | - | chr1_1:45403688-45403707 | None:intergenic | 20.0% |
| !!! | TTATTCATTTTCGATTTACT+TGG | + | chr1_1:45403782-45403801 | Msa0023740:intron | 20.0% |
| !!! | AACTTGAATTTTAGTTTACT+TGG | + | chr1_1:45403809-45403828 | Msa0023740:intron | 20.0% |
| !!! | GTATTTTTTGCCAAATAATT+AGG | + | chr1_1:45403946-45403965 | Msa0023740:intron | 20.0% |
| !! | ATGTAAGTATATTTAATACG+AGG | + | chr1_1:45404004-45404023 | Msa0023740:intron | 20.0% |
| !! | TAGTTAAATTTGACATAAAC+GGG | + | chr1_1:45404268-45404287 | Msa0023740:CDS | 20.0% |
| !! | CATATCATATACTAGATATA+TGG | - | chr1_1:45405231-45405250 | None:intergenic | 20.0% |
| !!! | TATATGATATGTTAGCTTAT+AGG | + | chr1_1:45405240-45405259 | Msa0023740:intron | 20.0% |
| !!! | AAATGTTAGCTTATAGTTAT+AGG | + | chr1_1:45405315-45405334 | Msa0023740:intron | 20.0% |
| !!! | ATAGTTATAGGTATCAATTT+TGG | + | chr1_1:45405327-45405346 | Msa0023740:intron | 20.0% |
| !! | TTTAAACCAACAAAATTGTT+TGG | - | chr1_1:45405618-45405637 | None:intergenic | 20.0% |
| !! | ATAATTGGAATCAATAGTTA+AGG | + | chr1_1:45406459-45406478 | Msa0023740:intron | 20.0% |
| !! | GTGAAAAATTAAATGAGTAA+GGG | - | chr1_1:45406860-45406879 | None:intergenic | 20.0% |
| !!! | ATTTTCGAATATTTGAACTT+TGG | + | chr1_1:45407100-45407119 | Msa0023740:intron | 20.0% |
| !! | TATTTATAAAGAAGTGGTTT+AGG | + | chr1_1:45407412-45407431 | Msa0023740:intron | 20.0% |
| !! | ATTTATAAAGAAGTGGTTTA+GGG | + | chr1_1:45407413-45407432 | Msa0023740:intron | 20.0% |
| !! | TGTATATATAAGAATAGTGT+TGG | + | chr1_1:45407592-45407611 | Msa0023740:intron | 20.0% |
| !!! | AAAATACTATTGAAAAGCAT+TGG | - | chr1_1:45407731-45407750 | None:intergenic | 20.0% |
| !! | ATATCAATATTTGTGTATCA+GGG | + | chr1_1:45407856-45407875 | Msa0023740:intron | 20.0% |
| !!! | TTTATGTTGGTGTTTTTATT+CGG | - | chr1_1:45408661-45408680 | None:intergenic | 20.0% |
| ! | AACAATGCAAAACAAGAAAA+AGG | + | chr1_1:45403391-45403410 | Msa0023740:CDS | 25.0% |
| ! | AAGAGACAATATTATATCAC+TGG | + | chr1_1:45403504-45403523 | Msa0023740:CDS | 25.0% |
| ! | ATATTATATCACTGGAACAA+AGG | + | chr1_1:45403512-45403531 | Msa0023740:CDS | 25.0% |
| ! | TAAAATCACAAGTTAACTCA+TGG | + | chr1_1:45403729-45403748 | Msa0023740:intron | 25.0% |
| ! | TCATACGCTTTCATAAATTT+AGG | + | chr1_1:45403754-45403773 | Msa0023740:intron | 25.0% |
| ! | TCTAAATACGAAACAGAAAA+TGG | + | chr1_1:45404303-45404322 | Msa0023740:CDS | 25.0% |
| !! | ACAAATTATGACAAGTTGAA+TGG | + | chr1_1:45404336-45404355 | Msa0023740:CDS | 25.0% |
| ! | TTCCTAATCTTATGAACATT+AGG | - | chr1_1:45404633-45404652 | None:intergenic | 25.0% |
| ! | ACAAGATAAACTCAGTATTA+AGG | + | chr1_1:45404677-45404696 | Msa0023740:CDS | 25.0% |
| ! | GTATTAAGGAAACATCTATT+TGG | + | chr1_1:45404691-45404710 | Msa0023740:CDS | 25.0% |
| ! | TCATAACTTGAGAAAAATTC+AGG | - | chr1_1:45404762-45404781 | None:intergenic | 25.0% |
| ! | TGCTTGTTTCAAACTTAAAA+AGG | + | chr1_1:45405273-45405292 | Msa0023740:intron | 25.0% |
| ! | TTCACAATTTAATTATGGTC+AGG | + | chr1_1:45405478-45405497 | Msa0023740:intron | 25.0% |
| ! | TCACAATTTAATTATGGTCA+GGG | + | chr1_1:45405479-45405498 | Msa0023740:intron | 25.0% |
| !!! | CCAGATTTATTTTTCTTTTG+GGG | - | chr1_1:45405541-45405560 | None:intergenic | 25.0% |
| !!! | GCCAGATTTATTTTTCTTTT+GGG | - | chr1_1:45405542-45405561 | None:intergenic | 25.0% |
| !!! | TGCCAGATTTATTTTTCTTT+TGG | - | chr1_1:45405543-45405562 | None:intergenic | 25.0% |
| !! | TTGATGGACATATATAATTC+AGG | + | chr1_1:45405975-45405994 | Msa0023740:intron | 25.0% |
| !!! | TGCATATTTTGGTTAAATCT+GGG | - | chr1_1:45406263-45406282 | None:intergenic | 25.0% |
| ! | AAGAGAGTGAAACAATTAAT+TGG | + | chr1_1:45406545-45406564 | Msa0023740:intron | 25.0% |
| !! | AAATGCAGACAAGTATTTTA+GGG | + | chr1_1:45406788-45406807 | Msa0023740:intron | 25.0% |
| ! | GGTGAAAAATTAAATGAGTA+AGG | - | chr1_1:45406861-45406880 | None:intergenic | 25.0% |
| ! | TGTTTAACGAATTACAAAGT+AGG | + | chr1_1:45407134-45407153 | Msa0023740:intron | 25.0% |
| ! | GTTTAACGAATTACAAAGTA+GGG | + | chr1_1:45407135-45407154 | Msa0023740:intron | 25.0% |
| ! | TTTAACGAATTACAAAGTAG+GGG | + | chr1_1:45407136-45407155 | Msa0023740:intron | 25.0% |
| ! | TTATCGCTTTAATAGAAGTA+GGG | - | chr1_1:45407271-45407290 | None:intergenic | 25.0% |
| ! | TTTATCGCTTTAATAGAAGT+AGG | - | chr1_1:45407272-45407291 | None:intergenic | 25.0% |
| ! | CATATCAATATTTGTGTATC+AGG | + | chr1_1:45407855-45407874 | Msa0023740:intron | 25.0% |
| ! | TTCTGTTTCATTCAATCAAA+AGG | + | chr1_1:45407936-45407955 | Msa0023740:intron | 25.0% |
| !! | ATTTTCGTTCAAACTATGTT+TGG | + | chr1_1:45407963-45407982 | Msa0023740:intron | 25.0% |
| !! | ACTCTTTTTGGATATATTTG+CGG | - | chr1_1:45408089-45408108 | None:intergenic | 25.0% |
| !! | TTATAAGTGAACACTCTTTT+TGG | - | chr1_1:45408101-45408120 | None:intergenic | 25.0% |
| ! | TTGTTAATCCTCTAATTTCT+TGG | + | chr1_1:45408182-45408201 | Msa0023740:intron | 25.0% |
| ! | TGTTAATCCTCTAATTTCTT+GGG | + | chr1_1:45408183-45408202 | Msa0023740:intron | 25.0% |
| !! | GCTGAGAAATTAATATTTTG+TGG | + | chr1_1:45408303-45408322 | Msa0023740:intron | 25.0% |
| ! | TAAGTGTATATCATTAATGC+AGG | + | chr1_1:45408459-45408478 | Msa0023740:intron | 25.0% |
| ! | ATGTATCCCAAAGTTTATAA+TGG | + | chr1_1:45408518-45408537 | Msa0023740:intron | 25.0% |
| ! | ATAGCACCATTATAAACTTT+GGG | - | chr1_1:45408527-45408546 | None:intergenic | 25.0% |
| ! | ATGATCAAAAGATGAATCAA+AGG | - | chr1_1:45409121-45409140 | None:intergenic | 25.0% |
| !! | TTCATCTTTTGATCATTTGA+AGG | + | chr1_1:45409125-45409144 | Msa0023740:CDS | 25.0% |
| TGCAAAACAAGAAAAAGGAA+AGG | + | chr1_1:45403396-45403415 | Msa0023740:CDS | 30.0% | |
| GGAAAAAGAGTTAACTATTG+AGG | + | chr1_1:45403417-45403436 | Msa0023740:CDS | 30.0% | |
| AATGCTGCTAAGAAAGTTAA+AGG | + | chr1_1:45403468-45403487 | Msa0023740:CDS | 30.0% | |
| ACAAAGGAAAAGAAAGACAT+TGG | + | chr1_1:45403528-45403547 | Msa0023740:CDS | 30.0% | |
| GATTTGAATTCTATCTCTTG+AGG | + | chr1_1:45403698-45403717 | Msa0023740:intron | 30.0% | |
| ! | TTTGCTTAAACTCCTGATTT+TGG | + | chr1_1:45404069-45404088 | Msa0023740:intron | 30.0% |
| ! | TTGCTTAAACTCCTGATTTT+GGG | + | chr1_1:45404070-45404089 | Msa0023740:intron | 30.0% |
| ! | AATTGACTTTGTTCACCTTA+AGG | - | chr1_1:45404103-45404122 | None:intergenic | 30.0% |
| ATTATGAGGCTTTCTATAAG+CGG | - | chr1_1:45404556-45404575 | None:intergenic | 30.0% | |
| CTCCTAATGTTCATAAGATT+AGG | + | chr1_1:45404628-45404647 | Msa0023740:CDS | 30.0% | |
| ! | AAGTAATTATGTGCTTGTTG+AGG | + | chr1_1:45404797-45404816 | Msa0023740:intron | 30.0% |
| !! | GGAAAATGATTTTGATGTTG+TGG | + | chr1_1:45404818-45404837 | Msa0023740:intron | 30.0% |
| !! | AATGATTTTGATGTTGTGGA+AGG | + | chr1_1:45404822-45404841 | Msa0023740:intron | 30.0% |
| AACAAGAGAAAACGTAAACA+TGG | + | chr1_1:45404927-45404946 | Msa0023740:intron | 30.0% | |
| !!! | TGTTCCTCACATTTTTTTCT+TGG | - | chr1_1:45405031-45405050 | None:intergenic | 30.0% |
| GATAAGATCATTCATCATAC+AGG | + | chr1_1:45405182-45405201 | Msa0023740:CDS | 30.0% | |
| ATTCATCATACAGGTAATCA+TGG | + | chr1_1:45405191-45405210 | Msa0023740:intron | 30.0% | |
| TCATATACTAGATATATGGC+TGG | - | chr1_1:45405227-45405246 | None:intergenic | 30.0% | |
| !! | TGACTCATGCTTTAGAAAAT+AGG | + | chr1_1:45405447-45405466 | Msa0023740:intron | 30.0% |
| CACAATTTAATTATGGTCAG+GGG | + | chr1_1:45405480-45405499 | Msa0023740:intron | 30.0% | |
| CCCCAAAAGAAAAATAAATC+TGG | + | chr1_1:45405538-45405557 | Msa0023740:intron | 30.0% | |
| ! | AGCTAACACAATTTTTACGA+GGG | - | chr1_1:45405881-45405900 | None:intergenic | 30.0% |
| ! | AAGCTAACACAATTTTTACG+AGG | - | chr1_1:45405882-45405901 | None:intergenic | 30.0% |
| TTCATGTTATGATTAACACC+GGG | - | chr1_1:45406047-45406066 | None:intergenic | 30.0% | |
| GTTCATGTTATGATTAACAC+CGG | - | chr1_1:45406048-45406067 | None:intergenic | 30.0% | |
| AGTACTATGATTCCAAATCA+GGG | + | chr1_1:45406113-45406132 | Msa0023740:CDS | 30.0% | |
| !!! | CTGCATATTTTGGTTAAATC+TGG | - | chr1_1:45406264-45406283 | None:intergenic | 30.0% |
| ! | CAAATGGACCAAAATTTTCA+TGG | + | chr1_1:45406287-45406306 | Msa0023740:CDS | 30.0% |
| ! | AAAATTTTCATGGCCATCAA+GGG | + | chr1_1:45406297-45406316 | Msa0023740:CDS | 30.0% |
| AACATCAGATTGAGAATTGA+AGG | - | chr1_1:45406405-45406424 | None:intergenic | 30.0% | |
| TGGCATCATCAAGTTATAAT+TGG | + | chr1_1:45406444-45406463 | Msa0023740:intron | 30.0% | |
| TCACTCTCTTTAATCAAAAG+AGG | - | chr1_1:45406535-45406554 | None:intergenic | 30.0% | |
| ! | TATTTTCTTTAGTCTGCACA+AGG | + | chr1_1:45406653-45406672 | Msa0023740:intron | 30.0% |
| ACAAACTACTATGTATAGCT+AGG | - | chr1_1:45406694-45406713 | None:intergenic | 30.0% | |
| ! | GAAATGCAGACAAGTATTTT+AGG | + | chr1_1:45406787-45406806 | Msa0023740:intron | 30.0% |
| AATTCGTTAAACACAAGTGA+AGG | - | chr1_1:45407127-45407146 | None:intergenic | 30.0% | |
| ! | AAAGTGTCACAAAATTCTCT+TGG | + | chr1_1:45407819-45407838 | Msa0023740:intron | 30.0% |
| ! | TTTTACAGTATGCTTACACT+TGG | + | chr1_1:45408262-45408281 | Msa0023740:intron | 30.0% |
| TCCATAAACAAATCTATCGA+CGG | - | chr1_1:45408405-45408424 | None:intergenic | 30.0% | |
| GATAGCACCATTATAAACTT+TGG | - | chr1_1:45408528-45408547 | None:intergenic | 30.0% | |
| AAACAAAAACACCATCACTA+TGG | + | chr1_1:45408828-45408847 | Msa0023740:CDS | 30.0% | |
| !! | TTTTGATTAACACTAGGAGT+TGG | - | chr1_1:45408856-45408875 | None:intergenic | 30.0% |
| !!! | TGCATGTTTTGATTAACACT+AGG | - | chr1_1:45408862-45408881 | None:intergenic | 30.0% |
| !! | TAGAAATTTTGGTCCATTTG+AGG | - | chr1_1:45409000-45409019 | None:intergenic | 30.0% |
| AAAATTTCTATGCGCAACAA+GGG | + | chr1_1:45409010-45409029 | Msa0023740:CDS | 30.0% | |
| ! | ATGTATTGGAACGTATGTTT+TGG | - | chr1_1:45409079-45409098 | None:intergenic | 30.0% |
| ATGTATCCCAGAGTTCATAA+TGG | + | chr1_1:45403334-45403353 | Msa0023740:CDS | 35.0% | |
| ATAGCACCATTATGAACTCT+GGG | - | chr1_1:45403343-45403362 | None:intergenic | 35.0% | |
| GTTAACTATTGAGGAACTAG+AGG | + | chr1_1:45403426-45403445 | Msa0023740:CDS | 35.0% | |
| GTGCACAAGAACACATATTA+AGG | + | chr1_1:45403554-45403573 | Msa0023740:CDS | 35.0% | |
| TCTGAGCTTATAGTGAACTA+AGG | + | chr1_1:45403852-45403871 | Msa0023740:intron | 35.0% | |
| !! | ATTTTGGGAACTTTGCCTTA+AGG | + | chr1_1:45404085-45404104 | Msa0023740:intron | 35.0% |
| CAGGTACATGTTAATGATGA+TGG | + | chr1_1:45404146-45404165 | Msa0023740:intron | 35.0% | |
| AAGTGAACCTAATATGGTGT+CGG | - | chr1_1:45404397-45404416 | None:intergenic | 35.0% | |
| TGAGAGAAGTGAACCTAATA+TGG | - | chr1_1:45404403-45404422 | None:intergenic | 35.0% | |
| ATGAGATTTAGTGAAGATCC+TGG | + | chr1_1:45404525-45404544 | Msa0023740:CDS | 35.0% | |
| TTATGAGGCTTTCTATAAGC+GGG | - | chr1_1:45404555-45404574 | None:intergenic | 35.0% | |
| AAAGCCTCATAATCTGAAGA+AGG | + | chr1_1:45404563-45404582 | Msa0023740:CDS | 35.0% | |
| CAAACCTTCTTCAGATTATG+AGG | - | chr1_1:45404570-45404589 | None:intergenic | 35.0% | |
| CTCATAATCTGAAGAAGGTT+TGG | + | chr1_1:45404568-45404587 | Msa0023740:CDS | 35.0% | |
| TAATCTGAAGAAGGTTTGGA+AGG | + | chr1_1:45404572-45404591 | Msa0023740:CDS | 35.0% | |
| ! | GGTTTGGAAGGTTTATGTTT+TGG | + | chr1_1:45404584-45404603 | Msa0023740:CDS | 35.0% |
| AGTTATGATTCTCGTGTTGA+AGG | + | chr1_1:45404774-45404793 | Msa0023740:CDS | 35.0% | |
| TTTCTTGGTGGAATTCATGT+TGG | - | chr1_1:45405016-45405035 | None:intergenic | 35.0% | |
| TCCACCAAGAAAAAAATGTG+AGG | + | chr1_1:45405024-45405043 | Msa0023740:intron | 35.0% | |
| !!! | TCCTCACATTTTTTTCTTGG+TGG | - | chr1_1:45405028-45405047 | None:intergenic | 35.0% |
| ! | CATTTTACTAGCGCAGAAAT+AGG | + | chr1_1:45405056-45405075 | Msa0023740:intron | 35.0% |
| CAACTTCAACCATTTCGAAT+TGG | - | chr1_1:45405094-45405113 | None:intergenic | 35.0% | |
| TGAATGATCTTATCTGCAAC+AGG | - | chr1_1:45405176-45405195 | None:intergenic | 35.0% | |
| ! | GCTACTCCAAACAATTTTGT+TGG | + | chr1_1:45405609-45405628 | Msa0023740:intron | 35.0% |
| ! | CTAACACAATTTTTACGAGG+GGG | - | chr1_1:45405879-45405898 | None:intergenic | 35.0% |
| ! | GCTAACACAATTTTTACGAG+GGG | - | chr1_1:45405880-45405899 | None:intergenic | 35.0% |
| GTTATCGAATCCATAATCAG+CGG | - | chr1_1:45405910-45405929 | None:intergenic | 35.0% | |
| TATGGATTCGATAACAATGC+AGG | + | chr1_1:45405915-45405934 | Msa0023740:intron | 35.0% | |
| AACAATGCAGGTAATTACTC+AGG | + | chr1_1:45405927-45405946 | Msa0023740:intron | 35.0% | |
| ! | AGAAGTGGTTTCTGATTTGA+TGG | + | chr1_1:45405959-45405978 | Msa0023740:intron | 35.0% |
| GAGTACTATGATTCCAAATC+AGG | + | chr1_1:45406112-45406131 | Msa0023740:CDS | 35.0% | |
| CTTTGATTAACACCCTGATT+TGG | - | chr1_1:45406128-45406147 | None:intergenic | 35.0% | |
| ! | CCATTTGATGCTGCATATTT+TGG | - | chr1_1:45406274-45406293 | None:intergenic | 35.0% |
| CCAAAATATGCAGCATCAAA+TGG | + | chr1_1:45406271-45406290 | Msa0023740:CDS | 35.0% | |
| !! | CTTGATGGCCATGAAAATTT+TGG | - | chr1_1:45406298-45406317 | None:intergenic | 35.0% |
| ! | CAAAATTTTCATGGCCATCA+AGG | + | chr1_1:45406296-45406315 | Msa0023740:CDS | 35.0% |
| ! | AAATTTTCATGGCCATCAAG+GGG | + | chr1_1:45406298-45406317 | Msa0023740:CDS | 35.0% |
| ACATTAGCTACTTCAGCATT+AGG | - | chr1_1:45406353-45406372 | None:intergenic | 35.0% | |
| ! | AGAATTGAAGGTTGTTGTTG+AGG | - | chr1_1:45406393-45406412 | None:intergenic | 35.0% |
| TGATGCTTACAACAACTTTG+TGG | + | chr1_1:45406424-45406443 | Msa0023740:CDS | 35.0% | |
| AGAGGCTATTTGTGAAAAAG+TGG | - | chr1_1:45406517-45406536 | None:intergenic | 35.0% | |
| ! | GATTTTACTTGTGCTTAGAG+AGG | + | chr1_1:45406576-45406595 | Msa0023740:intron | 35.0% |
| TGAGTGTGTCCATTATATGA+AGG | + | chr1_1:45406735-45406754 | Msa0023740:intron | 35.0% | |
| ACACACTTGCCTTCATATAA+TGG | - | chr1_1:45406747-45406766 | None:intergenic | 35.0% | |
| GCTTATCATCTTACACATGA+AGG | + | chr1_1:45407548-45407567 | Msa0023740:intron | 35.0% | |
| ACACAGATTAAGAGAGTGAT+TGG | - | chr1_1:45407672-45407691 | None:intergenic | 35.0% | |
| CCAATATCCCAAGAAATTAG+AGG | - | chr1_1:45408193-45408212 | None:intergenic | 35.0% | |
| CCTCTAATTTCTTGGGATAT+TGG | + | chr1_1:45408190-45408209 | Msa0023740:intron | 35.0% | |
| TACAACTCTAGCATTTACGT+CGG | - | chr1_1:45408356-45408375 | None:intergenic | 35.0% | |
| ! | TCCGTCGATAGATTTGTTTA+TGG | + | chr1_1:45408401-45408420 | Msa0023740:intron | 35.0% |
| ATTAATGCAGGCCTTAATCT+TGG | + | chr1_1:45408471-45408490 | Msa0023740:intron | 35.0% | |
| AAAAGCTTGTGCCAAGATTA+AGG | - | chr1_1:45408485-45408504 | None:intergenic | 35.0% | |
| AGCTTCATACAATGCAAATC+AGG | + | chr1_1:45408568-45408587 | Msa0023740:CDS | 35.0% | |
| TTCATACAATGCAAATCAGG+AGG | + | chr1_1:45408571-45408590 | Msa0023740:CDS | 35.0% | |
| ! | AGAAGTGGTTTCTGATTTGA+TGG | + | chr1_1:45405959-45405978 | Msa0023740:intron | 35.0% |
| AAGAGGAGTTGGAATAATGT+TGG | - | chr1_1:45408698-45408717 | None:intergenic | 35.0% | |
| AACATTATTCCAACTCCTCT+TGG | + | chr1_1:45408697-45408716 | Msa0023740:CDS | 35.0% | |
| !!! | AAGTTTTGGATAACACCAAG+AGG | - | chr1_1:45408715-45408734 | None:intergenic | 35.0% |
| TGAACAAAAACACCGTGATT+TGG | - | chr1_1:45408805-45408824 | None:intergenic | 35.0% | |
| ACACTTAAAGTGTAGACTTG+AGG | - | chr1_1:45408886-45408905 | None:intergenic | 35.0% | |
| ! | TGGCATTGAAGTATTCATCA+TGG | - | chr1_1:45408932-45408951 | None:intergenic | 35.0% |
| TTCAATGCCAATGATGAACA+TGG | + | chr1_1:45408942-45408961 | Msa0023740:CDS | 35.0% | |
| !!! | TGCATGTTTTGGTTAAATCC+GGG | - | chr1_1:45408976-45408995 | None:intergenic | 35.0% |
| !!! | CTGCATGTTTTGGTTAAATC+CGG | - | chr1_1:45408977-45408996 | None:intergenic | 35.0% |
| ! | CTTGTTGCGCATAGAAATTT+TGG | - | chr1_1:45409011-45409030 | None:intergenic | 35.0% |
| CAAAATTTCTATGCGCAACA+AGG | + | chr1_1:45409009-45409028 | Msa0023740:CDS | 35.0% | |
| AAATTTCTATGCGCAACAAG+GGG | + | chr1_1:45409011-45409030 | Msa0023740:CDS | 35.0% | |
| !!! | TATGTTTTGGTCGAGACATT+AGG | - | chr1_1:45409066-45409085 | None:intergenic | 35.0% |
| GTTGAGACATTTGCATGTAT+TGG | - | chr1_1:45409093-45409112 | None:intergenic | 35.0% | |
| GATAGCACCATTATGAACTC+TGG | - | chr1_1:45403344-45403363 | None:intergenic | 40.0% | |
| CTATCGCTAACCATTCAAGA+GGG | + | chr1_1:45403359-45403378 | Msa0023740:CDS | 40.0% | |
| TATCGCTAACCATTCAAGAG+GGG | + | chr1_1:45403360-45403379 | Msa0023740:CDS | 40.0% | |
| TTGAAGTTTCCCCTCTTGAA+TGG | - | chr1_1:45403372-45403391 | None:intergenic | 40.0% | |
| ATTCTATCTCTTGAGGCAAG+TGG | + | chr1_1:45403705-45403724 | Msa0023740:intron | 40.0% | |
| AAGGCAAAGTTCCCAAAATC+AGG | - | chr1_1:45404084-45404103 | None:intergenic | 40.0% | |
| AACATGTACCTGTTCACACT+AGG | - | chr1_1:45404138-45404157 | None:intergenic | 40.0% | |
| TTGTCTGATGAACCACTCAT+TGG | - | chr1_1:45404225-45404244 | None:intergenic | 40.0% | |
| GGTTCATCAGACAATTTACG+AGG | + | chr1_1:45404231-45404250 | Msa0023740:CDS | 40.0% | |
| TCGTATTTAGAAATTGCCGC+TGG | - | chr1_1:45404294-45404313 | None:intergenic | 40.0% | |
| TTCAGCGAGTGAAGTGTAAT+TGG | - | chr1_1:45404366-45404385 | None:intergenic | 40.0% | |
| AGTGAACCTAATATGGTGTC+GGG | - | chr1_1:45404396-45404415 | None:intergenic | 40.0% | |
| CGGAGATTTCCATTGGAAAA+AGG | + | chr1_1:45404453-45404472 | Msa0023740:CDS | 40.0% | |
| !!! | GAAGGTTTATGTTTTGGCAG+CGG | + | chr1_1:45404590-45404609 | Msa0023740:CDS | 40.0% |
| GGAACATAGTCAGACAATCA+AGG | + | chr1_1:45404649-45404668 | Msa0023740:CDS | 40.0% | |
| !! | GATTTTGATGTTGTGGAAGG+TGG | + | chr1_1:45404825-45404844 | Msa0023740:intron | 40.0% |
| TGGAATTCATGTTGGTCAAG+AGG | - | chr1_1:45405008-45405027 | None:intergenic | 40.0% | |
| CAGCAACAACCAATTCGAAA+TGG | + | chr1_1:45405082-45405101 | Msa0023740:CDS | 40.0% | |
| AATGCAGGTAATTACTCAGG+AGG | + | chr1_1:45405930-45405949 | Msa0023740:intron | 40.0% | |
| TGGAATCATCGTACTCATGA+CGG | - | chr1_1:45406021-45406040 | None:intergenic | 40.0% | |
| TTATGATTAACACCGGGAGT+TGG | - | chr1_1:45406041-45406060 | None:intergenic | 40.0% | |
| CACTTGCATGGTAGATTTGA+TGG | - | chr1_1:45406070-45406089 | None:intergenic | 40.0% | |
| TCCAATGCCAGTTATGAACA+TGG | + | chr1_1:45406229-45406248 | Msa0023740:CDS | 40.0% | |
| ACCATGTTCATAACTGGCAT+TGG | - | chr1_1:45406233-45406252 | None:intergenic | 40.0% | |
| GTTGCAACCATGTTCATAAC+TGG | - | chr1_1:45406239-45406258 | None:intergenic | 40.0% | |
| ! | AATTTTCATGGCCATCAAGG+GGG | + | chr1_1:45406299-45406318 | Msa0023740:CDS | 40.0% |
| !! | TACAAAGTAGGGGTGTTGAA+TGG | + | chr1_1:45407146-45407165 | Msa0023740:intron | 40.0% |
| ACACAACTTAAGAGAGGCAA+AGG | - | chr1_1:45407627-45407646 | None:intergenic | 40.0% | |
| GACACAACACAACTTAAGAG+AGG | - | chr1_1:45407633-45407652 | None:intergenic | 40.0% | |
| ! | ACTCTTTCTCAGTTGCTTTG+TGG | + | chr1_1:45407693-45407712 | Msa0023740:intron | 40.0% |
| TGCAAATGACCTTTGATCGT+TGG | + | chr1_1:45408039-45408058 | Msa0023740:intron | 40.0% | |
| TGCAAATGACCAACGATCAA+AGG | - | chr1_1:45408051-45408070 | None:intergenic | 40.0% | |
| ATACAATGCAAATCAGGAGG+AGG | + | chr1_1:45408574-45408593 | Msa0023740:CDS | 40.0% | |
| AGGCGACACAACATTTATGT+TGG | - | chr1_1:45408674-45408693 | None:intergenic | 40.0% | |
| ! | AGTGCTTTGGTTCCAAATCA+CGG | + | chr1_1:45408790-45408809 | Msa0023740:CDS | 40.0% |
| !! | TGGTGTTGCTATTCTGTTGT+TGG | - | chr1_1:45408912-45408931 | None:intergenic | 40.0% |
| GAAGCAACCATGTTCATCAT+TGG | - | chr1_1:45408952-45408971 | None:intergenic | 40.0% | |
| AATTTCTATGCGCAACAAGG+GGG | + | chr1_1:45409012-45409031 | Msa0023740:CDS | 40.0% | |
| GCTATCGCTAACCATTCAAG+AGG | + | chr1_1:45403358-45403377 | Msa0023740:CDS | 45.0% | |
| ATGGAAGTTTGTGATGCTCG+TGG | + | chr1_1:45404165-45404184 | Msa0023740:CDS | 45.0% | |
| TATGGAGTAATACCCCACGA+GGG | + | chr1_1:45404195-45404214 | Msa0023740:CDS | 45.0% | |
| CATCAGACAATTTACGAGGC+TGG | + | chr1_1:45404235-45404254 | Msa0023740:CDS | 45.0% | |
| ATTTGACATAAACGGGCCAG+CGG | + | chr1_1:45404275-45404294 | Msa0023740:CDS | 45.0% | |
| GAACTACCCGACACCATATT+AGG | + | chr1_1:45404387-45404406 | Msa0023740:CDS | 45.0% | |
| AATGGAAATCTCCGTTGTGG+TGG | - | chr1_1:45404447-45404466 | None:intergenic | 45.0% | |
| ACCACAACGGAGATTTCCAT+TGG | + | chr1_1:45404446-45404465 | Msa0023740:CDS | 45.0% | |
| TCCAATGGAAATCTCCGTTG+TGG | - | chr1_1:45404450-45404469 | None:intergenic | 45.0% | |
| ! | GGAGGAATGCCTTTTTCCAA+TGG | - | chr1_1:45404465-45404484 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTCCTCCACCA+TGG | + | chr1_1:45404469-45404488 | Msa0023740:CDS | 45.0% |
| CTCCATGATTCTTTCCCTGT+TGG | - | chr1_1:45404498-45404517 | None:intergenic | 45.0% | |
| CAACAGGGAAAGAATCATGG+AGG | + | chr1_1:45404496-45404515 | Msa0023740:CDS | 45.0% | |
| ! | GACGATGACGATGATGATGA+TGG | - | chr1_1:45404894-45404913 | None:intergenic | 45.0% |
| ATCATCGTCATCGTCGTATG+AGG | + | chr1_1:45404899-45404918 | Msa0023740:intron | 45.0% | |
| TCATCGTCATCGTCGTATGA+GGG | + | chr1_1:45404900-45404919 | Msa0023740:intron | 45.0% | |
| GCGAATCCCTTCACATCAAT+GGG | + | chr1_1:45405502-45405521 | Msa0023740:intron | 45.0% | |
| CGAATCCCTTCACATCAATG+GGG | + | chr1_1:45405503-45405522 | Msa0023740:intron | 45.0% | |
| TGCTACCCCATTGATGTGAA+GGG | - | chr1_1:45405511-45405530 | None:intergenic | 45.0% | |
| ATGCTACCCCATTGATGTGA+AGG | - | chr1_1:45405512-45405531 | None:intergenic | 45.0% | |
| TCACATCAATGGGGTAGCAT+TGG | + | chr1_1:45405512-45405531 | Msa0023740:intron | 45.0% | |
| ATCGAATCCATAATCAGCGG+CGG | - | chr1_1:45405907-45405926 | None:intergenic | 45.0% | |
| AGTACGATGATTCCAACTCC+CGG | + | chr1_1:45406026-45406045 | Msa0023740:CDS | 45.0% | |
| CTACCATGCAAGTGTTCAAC+AGG | + | chr1_1:45406076-45406095 | Msa0023740:CDS | 45.0% | |
| TCTCCTGTTGAACACTTGCA+TGG | - | chr1_1:45406082-45406101 | None:intergenic | 45.0% | |
| ! | GTTGAGGCATTTGCTTGCAT+TGG | - | chr1_1:45406377-45406396 | None:intergenic | 45.0% |
| CTTAGAGAGGTCACTGGAAA+AGG | + | chr1_1:45406589-45406608 | Msa0023740:intron | 45.0% | |
| ! | TCTGCACAAGGTGTCTCTTT+GGG | + | chr1_1:45406665-45406684 | Msa0023740:intron | 45.0% |
| CTCTATCAGACTCTGAACAC+TGG | - | chr1_1:45407203-45407222 | None:intergenic | 45.0% | |
| TGCTATCGCTAACCCTTCAA+GGG | + | chr1_1:45408541-45408560 | Msa0023740:intron | 45.0% | |
| ATGAAGCTTCTCCCCTTGAA+GGG | - | chr1_1:45408556-45408575 | None:intergenic | 45.0% | |
| TATGAAGCTTCTCCCCTTGA+AGG | - | chr1_1:45408557-45408576 | None:intergenic | 45.0% | |
| GGAGTTGGAATAATGTTGGC+AGG | - | chr1_1:45408694-45408713 | None:intergenic | 45.0% | |
| TGGATAACACCAAGAGGAGT+TGG | - | chr1_1:45408709-45408728 | None:intergenic | 45.0% | |
| ! | AGACTTGAGGCTGGAAGTTT+TGG | - | chr1_1:45408729-45408748 | None:intergenic | 45.0% |
| !! | ACACTTCTAGGGTAGACTTG+AGG | - | chr1_1:45408742-45408761 | None:intergenic | 45.0% |
| !! | CTACCCTAGAAGTGTTCAAC+CGG | + | chr1_1:45408747-45408766 | Msa0023740:CDS | 45.0% |
| ! | TCACCGGTTGAACACTTCTA+GGG | - | chr1_1:45408753-45408772 | None:intergenic | 45.0% |
| ! | TTCACCGGTTGAACACTTCT+AGG | - | chr1_1:45408754-45408773 | None:intergenic | 45.0% |
| !! | ATGTCGGTGTTGTTCTTCAC+CGG | - | chr1_1:45408769-45408788 | None:intergenic | 45.0% |
| ! | TGGAACCAAAGCACTCATGT+CGG | - | chr1_1:45408785-45408804 | None:intergenic | 45.0% |
| AGGAGTTGGAACCATAGTGA+TGG | - | chr1_1:45408842-45408861 | None:intergenic | 45.0% | |
| ATGAACATGGTTGCTTCTCC+CGG | + | chr1_1:45408955-45408974 | Msa0023740:CDS | 45.0% | |
| !! | CCATTTGAGGCTGCATGTTT+TGG | - | chr1_1:45408987-45409006 | None:intergenic | 45.0% |
| CCAAAACATGCAGCCTCAAA+TGG | + | chr1_1:45408984-45409003 | Msa0023740:CDS | 45.0% | |
| !!! | TCTTTATAAATATTTTTAAA+AGG | - | chr1_1:45407404-45407423 | None:intergenic | 5.0% |
| AGCTGACACCTAGTGTGAAC+AGG | + | chr1_1:45404127-45404146 | Msa0023740:intron | 50.0% | |
| GATGCTCGTGGCTTCATCTA+TGG | + | chr1_1:45404177-45404196 | Msa0023740:CDS | 50.0% | |
| CTATGGAGTAATACCCCACG+AGG | + | chr1_1:45404194-45404213 | Msa0023740:CDS | 50.0% | |
| !! | ACTCATTGGTTTGCCCTCGT+GGG | - | chr1_1:45404211-45404230 | None:intergenic | 50.0% |
| CAGACAATTTACGAGGCTGG+TGG | + | chr1_1:45404238-45404257 | Msa0023740:CDS | 50.0% | |
| !! | CGTTGTGGTGGATCACAATG+CGG | - | chr1_1:45404435-45404454 | None:intergenic | 50.0% |
| CGCATTGTGATCCACCACAA+CGG | + | chr1_1:45404433-45404452 | Msa0023740:CDS | 50.0% | |
| GGCCAACAGGGAAAGAATCA+TGG | + | chr1_1:45404493-45404512 | Msa0023740:CDS | 50.0% | |
| TTTCTATAAGCGGGTAGGCC+AGG | - | chr1_1:45404546-45404565 | None:intergenic | 50.0% | |
| GAGGCTTTCTATAAGCGGGT+AGG | - | chr1_1:45404551-45404570 | None:intergenic | 50.0% | |
| GGCGAATCCCTTCACATCAA+TGG | + | chr1_1:45405501-45405520 | Msa0023740:intron | 50.0% | |
| GCAGGTAATTACTCAGGAGG+AGG | + | chr1_1:45405933-45405952 | Msa0023740:intron | 50.0% | |
| GGTAATTACTCAGGAGGAGG+AGG | + | chr1_1:45405936-45405955 | Msa0023740:intron | 50.0% | |
| AGCTATTTGCACCCCCTTGA+TGG | - | chr1_1:45406313-45406332 | None:intergenic | 50.0% | |
| CTTGTGCTTAGAGAGGTCAC+TGG | + | chr1_1:45406583-45406602 | Msa0023740:intron | 50.0% | |
| ! | GTCTGCACAAGGTGTCTCTT+TGG | + | chr1_1:45406664-45406683 | Msa0023740:intron | 50.0% |
| AAGAGAGGCAAAGGAGACAC+AGG | - | chr1_1:45407618-45407637 | None:intergenic | 50.0% | |
| GTGCTATCGCTAACCCTTCA+AGG | + | chr1_1:45408540-45408559 | Msa0023740:intron | 50.0% | |
| GCTATCGCTAACCCTTCAAG+GGG | + | chr1_1:45408542-45408561 | Msa0023740:intron | 50.0% | |
| CAATGCAAATCAGGAGGAGG+AGG | + | chr1_1:45408577-45408596 | Msa0023740:CDS | 50.0% | |
| !! | TTCTAGGGTAGACTTGAGGC+TGG | - | chr1_1:45408738-45408757 | None:intergenic | 50.0% |
| CAACACCGACATGAGTGCTT+TGG | + | chr1_1:45408777-45408796 | Msa0023740:CDS | 50.0% | |
| TGGTCGAGACATTAGGCACT+TGG | - | chr1_1:45409059-45409078 | None:intergenic | 50.0% | |
| !! | CTCATTGGTTTGCCCTCGTG+GGG | - | chr1_1:45404210-45404229 | None:intergenic | 55.0% |
| !! | CACTCATTGGTTTGCCCTCG+TGG | - | chr1_1:45404212-45404231 | None:intergenic | 55.0% |
| CACGAGGGCAAACCAATGAG+TGG | + | chr1_1:45404210-45404229 | Msa0023740:CDS | 55.0% | |
| ! | AAGGCATTCCTCCACCATGG+TGG | + | chr1_1:45404472-45404491 | Msa0023740:CDS | 55.0% |
| TCTTTCCCTGTTGGCCACCA+TGG | - | chr1_1:45404489-45404508 | None:intergenic | 55.0% | |
| TACCGCAGCTTGCACACGTT+GGG | - | chr1_1:45405153-45405172 | None:intergenic | 55.0% | |
| TGCAAATCAGGAGGAGGAGG+AGG | + | chr1_1:45408580-45408599 | Msa0023740:CDS | 55.0% | |
| AAATCAGGAGGAGGAGGAGG+AGG | + | chr1_1:45408583-45408602 | Msa0023740:CDS | 55.0% | |
| AGGAGGAGGAGGAGAAGAAG+TGG | + | chr1_1:45408597-45408616 | Msa0023740:CDS | 55.0% | |
| CTCCACCATGGTGGCCAACA+GGG | + | chr1_1:45404481-45404500 | Msa0023740:CDS | 60.0% | |
| TTCCCTGTTGGCCACCATGG+TGG | - | chr1_1:45404486-45404505 | None:intergenic | 60.0% | |
| GCTTGCACACGTTGGGCAAG+AGG | - | chr1_1:45405146-45405165 | None:intergenic | 60.0% | |
| TGCCCAACGTGTGCAAGCTG+CGG | + | chr1_1:45405148-45405167 | Msa0023740:CDS | 60.0% | |
| GTACCGCAGCTTGCACACGT+TGG | - | chr1_1:45405154-45405173 | None:intergenic | 60.0% | |
| ! | AGCTTCGCCGCCGCTGATTA+TGG | + | chr1_1:45405897-45405916 | Msa0023740:intron | 60.0% |
| CTCAGGAGGAGGAGGAGAAG+TGG | + | chr1_1:45405944-45405963 | Msa0023740:intron | 60.0% | |
| CCTGTTGGCCACCATGGTGG+AGG | - | chr1_1:45404483-45404502 | None:intergenic | 65.0% | |
| CCTCCACCATGGTGGCCAAC+AGG | + | chr1_1:45404480-45404499 | Msa0023740:CDS | 65.0% | |
| TCAGGAGGAGGAGGAGGAGG+AGG | + | chr1_1:45408586-45408605 | Msa0023740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 45403334 | 45409179 | 45403334 | ID=Msa0023740;Name=Msa0023740 |
| chr1_1 | mRNA | 45403334 | 45409179 | 45403334 | ID=Msa0023740-mRNA-1;Parent=Msa0023740;Name=Msa0023740-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.83|0.6|0.66|6|0|704 |
| chr1_1 | exon | 45403334 | 45403575 | 45403334 | ID=Msa0023740-mRNA-1:exon:12967;Parent=Msa0023740-mRNA-1 |
| chr1_1 | exon | 45404149 | 45404798 | 45404149 | ID=Msa0023740-mRNA-1:exon:12968;Parent=Msa0023740-mRNA-1 |
| chr1_1 | exon | 45405072 | 45405203 | 45405072 | ID=Msa0023740-mRNA-1:exon:12969;Parent=Msa0023740-mRNA-1 |
| chr1_1 | exon | 45405997 | 45406455 | 45405997 | ID=Msa0023740-mRNA-1:exon:12970;Parent=Msa0023740-mRNA-1 |
| chr1_1 | exon | 45406796 | 45406809 | 45406796 | ID=Msa0023740-mRNA-1:exon:12971;Parent=Msa0023740-mRNA-1 |
| chr1_1 | exon | 45408562 | 45409179 | 45408562 | ID=Msa0023740-mRNA-1:exon:12972;Parent=Msa0023740-mRNA-1 |
| chr1_1 | CDS | 45403334 | 45403575 | 45403334 | ID=Msa0023740-mRNA-1:cds;Parent=Msa0023740-mRNA-1 |
| chr1_1 | CDS | 45404149 | 45404798 | 45404149 | ID=Msa0023740-mRNA-1:cds;Parent=Msa0023740-mRNA-1 |
| chr1_1 | CDS | 45405072 | 45405203 | 45405072 | ID=Msa0023740-mRNA-1:cds;Parent=Msa0023740-mRNA-1 |
| chr1_1 | CDS | 45405997 | 45406455 | 45405997 | ID=Msa0023740-mRNA-1:cds;Parent=Msa0023740-mRNA-1 |
| chr1_1 | CDS | 45406796 | 45406809 | 45406796 | ID=Msa0023740-mRNA-1:cds;Parent=Msa0023740-mRNA-1 |
| chr1_1 | CDS | 45408562 | 45409179 | 45408562 | ID=Msa0023740-mRNA-1:cds;Parent=Msa0023740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
