AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0023850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0023850 MtrunA17_Chr1g0177751 98.000 650 11 2 1 649 1 649 0.0 1325
Msa0023850 MtrunA17_Chr7g0267481 64.265 694 169 22 1 649 1 660 0.0 781
Msa0023850 MtrunA17_Chr4g0025521 46.739 736 280 29 1 649 1 711 2.02e-165 490
Msa0023850 MtrunA17_Chr1g0155681 55.016 309 116 7 142 438 148 445 1.36e-99 317
Msa0023850 MtrunA17_Chr3g0141941 53.925 293 117 6 150 434 148 430 8.41e-95 301
Msa0023850 MtrunA17_Chr5g0403251 46.610 354 162 7 153 482 330 680 1.52e-87 289
Msa0023850 MtrunA17_Chr8g0373801 53.103 290 115 4 157 433 384 665 2.61e-87 290
Msa0023850 MtrunA17_Chr8g0387321 52.313 281 126 4 161 437 185 461 5.95e-80 265
Msa0023850 MtrunA17_Chr4g0028701 44.444 315 117 6 153 418 237 542 5.68e-73 248
Msa0023850 MtrunA17_Chr3g0141931 47.529 263 130 5 160 419 164 421 8.30e-72 239
Msa0023850 MtrunA17_Chr4g0008591 41.317 334 145 7 156 469 191 493 6.28e-70 238
Msa0023850 MtrunA17_Chr7g0240371 45.545 303 127 8 153 442 129 406 2.25e-69 234
Msa0023850 MtrunA17_Chr2g0327021 40.312 320 167 6 112 418 203 511 5.05e-66 228
Msa0023850 MtrunA17_Chr1g0151681 35.563 284 153 5 162 432 244 510 1.83e-49 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0023850 AT2G35940.3 51.018 737 216 25 1 649 1 680 0.0 565
Msa0023850 AT2G35940.1 51.018 737 216 25 1 649 1 680 0.0 565
Msa0023850 AT2G35940.2 51.018 737 216 25 1 649 1 680 0.0 565
Msa0023850 AT2G16400.1 53.898 295 117 4 144 436 97 374 1.89e-97 308
Msa0023850 AT4G34610.2 52.050 317 126 6 124 428 94 396 6.03e-94 300
Msa0023850 AT4G34610.4 52.050 317 126 6 124 428 94 396 6.03e-94 300
Msa0023850 AT4G34610.3 52.050 317 126 6 124 428 94 396 6.03e-94 300
Msa0023850 AT4G34610.1 52.050 317 126 6 124 428 94 396 6.03e-94 300
Msa0023850 AT1G19700.1 56.884 276 106 6 152 420 156 425 7.55e-93 297
Msa0023850 AT1G19700.3 56.884 276 106 6 152 420 156 425 7.55e-93 297
Msa0023850 AT1G19700.5 56.884 276 106 6 152 420 156 425 7.55e-93 297
Msa0023850 AT1G19700.4 56.884 276 106 6 152 420 156 425 7.55e-93 297
Msa0023850 AT1G19700.2 56.884 276 106 6 152 420 156 425 7.55e-93 297
Msa0023850 AT1G75410.1 53.448 290 121 6 156 441 162 441 3.22e-92 295
Msa0023850 AT1G75410.2 53.448 290 121 6 156 441 162 441 3.22e-92 295
Msa0023850 AT2G27220.1 47.230 343 138 8 163 495 78 387 6.54e-85 273
Msa0023850 AT2G27220.3 47.230 343 138 8 163 495 78 387 6.54e-85 273
Msa0023850 AT2G27220.2 44.875 361 138 9 163 495 78 405 5.40e-81 263
Msa0023850 AT4G36870.2 47.797 295 133 4 161 442 312 598 5.61e-79 266
Msa0023850 AT4G36870.1 47.797 295 133 4 161 442 312 598 5.61e-79 266
Msa0023850 AT2G23760.2 52.045 269 110 4 155 413 232 491 7.76e-78 260
Msa0023850 AT2G23760.1 52.045 269 110 4 155 413 232 491 7.76e-78 260
Msa0023850 AT2G23760.3 52.045 269 110 4 155 413 232 491 7.76e-78 260
Msa0023850 AT1G75410.3 53.719 242 98 6 156 393 162 393 1.25e-73 243
Msa0023850 AT5G41410.1 45.423 284 118 4 164 422 196 467 1.90e-72 245
Msa0023850 AT2G23760.4 43.614 321 110 5 155 413 232 543 5.32e-68 235
Msa0023850 AT1G75430.1 42.125 273 143 6 155 419 10 275 4.33e-64 214
Msa0023850 AT5G02030.1 42.508 327 147 7 100 416 123 418 1.47e-63 221
Msa0023850 AT4G36870.4 47.325 243 111 3 161 394 312 546 4.42e-63 219
Msa0023850 AT4G36870.3 47.718 241 109 3 161 392 312 544 7.02e-62 216
Msa0023850 AT4G32980.1 36.422 313 170 6 126 425 154 450 3.96e-54 192
Msa0023850 AT4G32980.2 36.422 313 170 6 126 425 154 450 3.96e-54 192
Msa0023850 AT2G27990.1 37.231 325 158 8 107 418 205 496 1.28e-51 188
Msa0023850 AT1G75430.2 36.283 226 129 6 155 372 10 228 7.70e-36 137
Msa0023850 AT2G27990.2 30.466 279 148 8 107 372 205 450 1.87e-25 110

Find 200 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCAAACGGCTGTGTTTC+GGG 0.133801 1_1:-45665004 Msa0023850:CDS
GAACAAATTTCAATGAAATT+TGG 0.179649 1_1:-45661891 Msa0023850:CDS
TTCTTCCTAGTTGGATGTTT+TGG 0.189737 1_1:+45661655 None:intergenic
GCTTCACGCGCCGCTGAATT+AGG 0.196754 1_1:+45665118 None:intergenic
CCTCATTGTGACACATTATC+AGG 0.219156 1_1:-45661702 Msa0023850:CDS
ACTAATTTCATTGCTGGTTT+TGG 0.222320 1_1:-45661822 Msa0023850:CDS
GATGAAGTTGTTAATGTTAA+TGG 0.230482 1_1:-45664926 Msa0023850:CDS
TGCTTCAAACGGCTGTGTTT+CGG 0.238102 1_1:-45665005 Msa0023850:CDS
GTGGTGGAGGGAAGTGTTGC+CGG 0.239922 1_1:+45665288 None:intergenic
TAAAAGAAAGTGGTAATAAT+TGG 0.245416 1_1:+45660987 None:intergenic
GAAATCTATGTGTTTACTTC+GGG 0.256611 1_1:-45661278 Msa0023850:three_prime_UTR
CATAGGGATTTGAAAGTATA+TGG 0.277303 1_1:-45661159 Msa0023850:three_prime_UTR
TAAATGCTCGAGTTCGTCTT+TGG 0.292125 1_1:-45662274 Msa0023850:CDS
AATTGTGCGGCAAACCTCTT+TGG 0.296812 1_1:+45661561 None:intergenic
TAATGTTAATGGTGGGATTA+AGG 0.300957 1_1:-45664915 Msa0023850:CDS
TATGGTAACAGGTTTCAAAT+TGG 0.310497 1_1:-45662301 Msa0023850:intron
AACCAAACTAATTTCATTGC+TGG 0.316269 1_1:-45661828 Msa0023850:CDS
AACCAGCAATGAAATTAGTT+TGG 0.317050 1_1:+45661826 None:intergenic
CCGGCGTGTGGCGGCGGCTG+CGG 0.320508 1_1:+45665346 None:intergenic
ATTATTAGTTGTTGTTTCAT+TGG 0.321824 1_1:+45661914 None:intergenic
TTTGAACAAGTTGCAGGAAT+TGG 0.325273 1_1:-45663383 Msa0023850:CDS
CTGTTTCTGTTCTTCGTGCT+TGG 0.327008 1_1:-45663109 Msa0023850:CDS
TCTGGTGTTGTTGGTGGTGG+AGG 0.335542 1_1:+45665275 None:intergenic
TTCTCTTACTGCAGGGAATC+TGG 0.343902 1_1:-45661338 Msa0023850:three_prime_UTR
ACAAAGAGCTATTCAACAAT+TGG 0.347219 1_1:-45663183 Msa0023850:CDS
TGGTGGAGGGAAGTGTTGCC+GGG 0.348095 1_1:+45665289 None:intergenic
GTGAATGTTAGAAACAATTC+AGG 0.352767 1_1:-45662029 Msa0023850:CDS
TCCTCATTTGAACAAGTTGC+AGG 0.356187 1_1:-45663389 Msa0023850:CDS
TCATGGTTCCTTGTTCGCTT+TGG 0.356835 1_1:+45661966 None:intergenic
TAGAGATGGTTATTGTTTCA+TGG 0.358531 1_1:-45661853 Msa0023850:CDS
GGAAGTGTTGCCGGGGTGAT+TGG 0.360547 1_1:+45665297 None:intergenic
TTGTTTGGAATTGAAACTTT+TGG 0.360991 1_1:+45662100 None:intergenic
CTTATTTATGCCACAAAATC+CGG 0.365359 1_1:+45661534 None:intergenic
GGAACTCTTTCTTGTGGAGT+TGG 0.373552 1_1:+45662140 None:intergenic
AACCATAGGAATGTCTTGTT+TGG 0.375205 1_1:+45662085 None:intergenic
ACGCGCCACCACAGTTTGTC+GGG 0.378671 1_1:-45665243 Msa0023850:CDS
TGGCGGCGGCTGCGGCGCGT+CGG 0.387133 1_1:+45665354 None:intergenic
TGTTTAAAAGATGCAATTAC+CGG 0.390768 1_1:-45663305 Msa0023850:CDS
CAAAACAAACAGGACTTACT+AGG 0.391251 1_1:-45662439 Msa0023850:CDS
CTTCACGCGCCGCTGAATTA+GGG 0.391599 1_1:+45665119 None:intergenic
TTATATATATGATCTATGTT+TGG 0.396100 1_1:+45666461 None:intergenic
TTTCTAACATTCACACCAAC+AGG 0.398194 1_1:+45662038 None:intergenic
CTTTCAGGCAATCCTCTTTG+AGG 0.398269 1_1:+45663134 None:intergenic
CATGAGGTTTCTGCTTTGCA+TGG 0.403905 1_1:-45665184 Msa0023850:CDS
TGTCCAATCTTCTTCCTAGT+TGG 0.406313 1_1:+45661646 None:intergenic
TGTATAAAGAAAGAAGGAAT+TGG 0.408121 1_1:-45661236 Msa0023850:three_prime_UTR
TTCAGCTTCACGGAACTTGA+TGG 0.410535 1_1:-45662005 Msa0023850:CDS
GTTTGCCGCACAATTGTTAC+CGG 0.411095 1_1:-45661553 Msa0023850:CDS
TCATTGGACTTCGCATGATT+CGG 0.415664 1_1:+45661930 None:intergenic
TTGGATTCTGTTTCCGAGGT+TGG 0.416477 1_1:+45662119 None:intergenic
ATTGGCGAAACAAATGAGTT+TGG 0.419488 1_1:-45661624 Msa0023850:CDS
GCCGCTGAATTAGGGTCGGC+GGG 0.424159 1_1:+45665127 None:intergenic
AGGAGATCACCATCTGCATT+TGG 0.425879 1_1:+45663408 None:intergenic
AGCTTACATGCTCAAGGGTC+AGG 0.425924 1_1:-45665067 Msa0023850:CDS
AGTTCTGGTGTTGTTGGTGG+TGG 0.426204 1_1:+45665272 None:intergenic
CGTGTTCCCATTGGTGGGTC+GGG 0.428031 1_1:-45665034 Msa0023850:CDS
TTATATCATAAAGTTTCAAT+TGG 0.431070 1_1:-45661087 Msa0023850:three_prime_UTR
AGTGGAGAAGGTGGTTCTGT+TGG 0.435026 1_1:-45664830 Msa0023850:CDS
AGAACAGAAACAGATCTTTC+AGG 0.435978 1_1:+45663119 None:intergenic
GGTGGTTCTGTTGGTGGTGA+TGG 0.436016 1_1:-45664821 Msa0023850:CDS
TGAAATCTATGTGTTTACTT+CGG 0.438885 1_1:-45661279 Msa0023850:three_prime_UTR
TGAAGCTACACGCGCTACTC+AGG 0.440648 1_1:-45665101 Msa0023850:CDS
CATGTGTTTGTCTGAATCCT+TGG 0.446993 1_1:+45662466 None:intergenic
CCGCAGCCGCCGCCACACGC+CGG 0.448334 1_1:-45665346 Msa0023850:CDS
GAATCTTCAACTGCGGTTAG+TGG 0.448461 1_1:-45664848 Msa0023850:CDS
TCTGTTGGTGGTGATGGAAA+TGG 0.449581 1_1:-45664815 Msa0023850:CDS
CACATGCTTGCAAAACAAAC+AGG 0.449703 1_1:-45662449 Msa0023850:CDS
CTGGTGTTGTTGGTGGTGGA+GGG 0.450438 1_1:+45665276 None:intergenic
AGCTTTGGTGGCAAAATTGA+AGG 0.452290 1_1:-45663242 Msa0023850:CDS
AATCTTCCGATTTCCTCCAT+TGG 0.453150 1_1:+45661792 None:intergenic
GAATTGGATTATTCTAGTAT+AGG 0.454575 1_1:-45661220 Msa0023850:three_prime_UTR
GAACTCAAATGGTTCTATGC+AGG 0.455814 1_1:+45661190 None:intergenic
GGAGAAGGTGGTTCTGTTGG+TGG 0.458519 1_1:-45664827 Msa0023850:CDS
GAGGTCTCCAAGCATTATGA+TGG 0.458928 1_1:+45663153 None:intergenic
TTAGGAGAAGATGATAGCTT+TGG 0.460008 1_1:-45663257 Msa0023850:CDS
AGGGAAATAGATGATACAAT+CGG 0.464146 1_1:-45661504 Msa0023850:three_prime_UTR
AGAGATGGTTATTGTTTCAT+GGG 0.464621 1_1:-45661852 Msa0023850:CDS
ATGTACATTTCTTCCACCAT+TGG 0.467692 1_1:+45662248 None:intergenic
CATCCAACTAGGAAGAAGAT+TGG 0.468712 1_1:-45661649 Msa0023850:CDS
AATGGTGTTTCACTCACTCT+TGG 0.469626 1_1:-45661729 Msa0023850:CDS
TCCTGCAACTTGTTCAAATG+AGG 0.472047 1_1:+45663388 None:intergenic
AGGTTACCGGCGTGTGGCGG+CGG 0.475653 1_1:+45665340 None:intergenic
GGAGAAGATGATAGCTTTGG+TGG 0.477392 1_1:-45663254 Msa0023850:CDS
GCGTGTTCCCATTGGTGGGT+CGG 0.478334 1_1:-45665035 Msa0023850:CDS
CAAAGAGCTATTCAACAATT+GGG 0.478974 1_1:-45663182 Msa0023850:CDS
GAGATAAGTTCTGGTGTTGT+TGG 0.480326 1_1:+45665266 None:intergenic
CAATATCCAATGGAGGAAAT+CGG 0.481438 1_1:-45661798 Msa0023850:CDS
GTTTGTCGGGGTCCCACTCT+CGG 0.481951 1_1:-45665230 Msa0023850:CDS
CATAAAACATATATTCTCAA+TGG 0.482468 1_1:+45661044 None:intergenic
TGGCATAAATAAGACATTGA+AGG 0.484822 1_1:-45661524 Msa0023850:exon
TAGAGATTGTTTGTAGTGCT+AGG 0.486136 1_1:+45663339 None:intergenic
GACGAACCCGACCCACCAAT+GGG 0.487772 1_1:+45665028 None:intergenic
GGGAAATAGATGATACAATC+GGG 0.489001 1_1:-45661503 Msa0023850:three_prime_UTR
ACATAGATCATATATATAAG+AGG 0.491525 1_1:-45666457 Msa0023850:intron
GACGCGCGTGTTCCCATTGG+TGG 0.492130 1_1:-45665040 Msa0023850:CDS
TCGGTGATTGAAGAATTTCA+TGG 0.493060 1_1:+45661949 None:intergenic
TTGAGTTCTTAGATAGCATA+GGG 0.494340 1_1:-45661175 Msa0023850:three_prime_UTR
ATGCTATCTAAGAACTCAAA+TGG 0.497030 1_1:+45661179 None:intergenic
AAAATATGAAAATGTAATTG+AGG 0.497842 1_1:+45666960 None:intergenic
GTGGCAAAATTGAAGGGTCT+AGG 0.499962 1_1:-45663235 Msa0023850:CDS
TTGTAGTGCTAGGGCAGTGT+AGG 0.500467 1_1:+45663349 None:intergenic
GATTTGAAAGTATATGGTTG+AGG 0.502878 1_1:-45661153 Msa0023850:three_prime_UTR
AGAGCTGCGAATAAAAGCTT+AGG 0.506812 1_1:-45663275 Msa0023850:CDS
GAATGATCCATCATAATGCT+TGG 0.508715 1_1:-45663160 Msa0023850:CDS
TTCCAAACAAGACATTCCTA+TGG 0.509814 1_1:-45662087 Msa0023850:CDS
CACGCGCCACCACAGTTTGT+CGG 0.511030 1_1:-45665244 Msa0023850:CDS
AATGTACATGGAAGAGATGA+AGG 0.511291 1_1:-45662234 Msa0023850:CDS
GAGAAACACAATCATTGCTA+TGG 0.514493 1_1:+45661313 None:intergenic
AACTCAAATGGTTCTATGCA+GGG 0.514516 1_1:+45661191 None:intergenic
CATAATAATTCAGAAATCCA+AGG 0.518498 1_1:-45665436 Msa0023850:CDS
CAATTCAGGATTCAGCTTCA+CGG 0.521074 1_1:-45662015 Msa0023850:CDS
TTGTAGTGTATAAAGAAAGA+AGG 0.523070 1_1:-45661242 Msa0023850:three_prime_UTR
TCATTAAGCTTACATGCTCA+AGG 0.525593 1_1:-45665073 Msa0023850:CDS
CGCCGCTGAATTAGGGTCGG+CGG 0.525952 1_1:+45665126 None:intergenic
ACACCAACAGGTGAAGTTGA+TGG 0.527328 1_1:+45662050 None:intergenic
TCATGAAAATGAGTGTTTGA+AGG 0.530375 1_1:+45665401 None:intergenic
AACTTTCAGTTGCAAGTGGA+AGG 0.533964 1_1:-45666501 Msa0023850:intron
CAATTTACATCACAATCTGC+AGG 0.534042 1_1:-45666183 Msa0023850:intron
ATGTACGCTTCTCTTACTGC+AGG 0.535012 1_1:-45661346 Msa0023850:three_prime_UTR
AGAGATTGTTTGTAGTGCTA+GGG 0.537105 1_1:+45663340 None:intergenic
AGACGAACCCGACCCACCAA+TGG 0.537440 1_1:+45665027 None:intergenic
GGCATAAATAAGACATTGAA+GGG 0.538304 1_1:-45661523 Msa0023850:exon
ATGTGTTTGTCTGAATCCTT+GGG 0.538305 1_1:+45662467 None:intergenic
ATAAGTTCTGGTGTTGTTGG+TGG 0.538740 1_1:+45665269 None:intergenic
AACAGGACTTACTAGGAGCC+AGG 0.547114 1_1:-45662432 Msa0023850:intron
TCAACTGCGGTTAGTGGAGA+AGG 0.547613 1_1:-45664842 Msa0023850:CDS
TTATTATTACCTGAAAACCT+TGG 0.548405 1_1:+45661750 None:intergenic
GTTAATTAACATGCTTGATG+AGG 0.549695 1_1:-45664732 Msa0023850:intron
AGAAGCGTACATTTACATGT+TGG 0.550105 1_1:+45661357 None:intergenic
ATTCGCAGCTCTAATTTGGC+CGG 0.550635 1_1:+45663286 None:intergenic
TTTCATTGAAGGATCTTCAT+CGG 0.552364 1_1:+45662166 None:intergenic
TCGGGTTCGTCTGCTTCAAA+CGG 0.552442 1_1:-45665016 Msa0023850:CDS
TTTGAGTTCTTAGATAGCAT+AGG 0.555623 1_1:-45661176 Msa0023850:three_prime_UTR
AAGCAAGTCCAAAGCGAACA+AGG 0.556607 1_1:-45661974 Msa0023850:CDS
GTGGCGCGTGAGATAAGTTC+TGG 0.557053 1_1:+45665257 None:intergenic
CCAAACCAAAACATCCAACT+AGG 0.560227 1_1:-45661660 Msa0023850:CDS
AGTTCGTCTTTGGAAACCAA+TGG 0.560987 1_1:-45662264 Msa0023850:CDS
GATGATAGACAAAGTAGAGA+TGG 0.562540 1_1:-45661867 Msa0023850:CDS
AAATATGAAAATGTAATTGA+GGG 0.562854 1_1:+45666961 None:intergenic
ATGAAGGATCAAGAGATGAA+TGG 0.565783 1_1:-45662218 Msa0023850:CDS
GAGGACGCGCGTGTTCCCAT+TGG 0.566554 1_1:-45665043 Msa0023850:CDS
GAGTAATTGATGTAACCTGA+TGG 0.567818 1_1:+45665376 None:intergenic
GAAGTTGTTAATGTTAATGG+TGG 0.567999 1_1:-45664923 Msa0023850:CDS
CTTCAAACGGCTGTGTTTCG+GGG 0.569323 1_1:-45665003 Msa0023850:CDS
GTTTGGTTTCAGTTATCCCA+AGG 0.571345 1_1:-45662483 Msa0023850:intron
GAAGGCCGTCAGAACCACCT+TGG 0.574186 1_1:+45665419 None:intergenic
GAAATCCAAGGTGGTTCTGA+CGG 0.578996 1_1:-45665424 Msa0023850:CDS
CGCGCATGCAGTACAACATG+TGG 0.583615 1_1:-45665153 Msa0023850:CDS
ACACCATCAACTTCACCTGT+TGG 0.590840 1_1:-45662053 Msa0023850:CDS
ATTCAACTTTCAGTTGCAAG+TGG 0.592682 1_1:-45666505 Msa0023850:intron
TGTTGTACTGCATGCGCGGT+GGG 0.595977 1_1:+45665158 None:intergenic
ACGCGCGTGTTCCCATTGGT+GGG 0.596736 1_1:-45665039 Msa0023850:CDS
TAATATATATTTCTTAGCAT+AGG 0.597273 1_1:-45666902 Msa0023850:five_prime_UTR
AAATCTATGTGTTTACTTCG+GGG 0.600483 1_1:-45661277 Msa0023850:three_prime_UTR
GAAGCTACACGCGCTACTCA+GGG 0.605973 1_1:-45665100 Msa0023850:CDS
TGTTGGAGAATCTTCAACTG+CGG 0.611838 1_1:-45664855 Msa0023850:CDS
CCCCGCCGACCCTAATTCAG+CGG 0.612266 1_1:-45665128 Msa0023850:CDS
TCAAGAGATGAATGGTTCTG+AGG 0.612838 1_1:-45662210 Msa0023850:CDS
AATGGTGGAAGAAATGTACA+TGG 0.614228 1_1:-45662246 Msa0023850:CDS
TCGTCTTTGGAAACCAATGG+TGG 0.617524 1_1:-45662261 Msa0023850:CDS
TGCGAGATGCAATCATCGCA+AGG 0.618956 1_1:+45661469 None:intergenic
ACGCGCCGCTGAATTAGGGT+CGG 0.621487 1_1:+45665123 None:intergenic
GAGGTTGGAACTCTTTCTTG+TGG 0.623921 1_1:+45662134 None:intergenic
GCTTTGGTGGCAAAATTGAA+GGG 0.625009 1_1:-45663241 Msa0023850:CDS
AATATGAAAATGTAATTGAG+GGG 0.625866 1_1:+45666962 None:intergenic
AAGTTGTTAATGTTAATGGT+GGG 0.628751 1_1:-45664922 Msa0023850:CDS
GCAAAGCAGAAACCTCATGA+TGG 0.629561 1_1:+45665188 None:intergenic
TGTTCGATCTAAATCAATGA+CGG 0.630544 1_1:-45661431 Msa0023850:three_prime_UTR
ATATCACAACCAAATGCAGA+TGG 0.632389 1_1:-45663417 Msa0023850:CDS
ACTGATTGTTCTGCCGAGAG+TGG 0.632701 1_1:+45665217 None:intergenic
TCGGCAGAACAATCAGTACA+TGG 0.633689 1_1:-45665211 Msa0023850:CDS
CATTAAGCTTACATGCTCAA+GGG 0.634278 1_1:-45665072 Msa0023850:CDS
CACATGTTGTACTGCATGCG+CGG 0.634344 1_1:+45665154 None:intergenic
AGTGGGACCCCGACAAACTG+TGG 0.634422 1_1:+45665235 None:intergenic
ATCAGTACATGGCCATCATG+AGG 0.634995 1_1:-45665200 Msa0023850:CDS
CTGATTGTTCTGCCGAGAGT+GGG 0.636072 1_1:+45665218 None:intergenic
TCAACATGCAGAATCCAAAG+AGG 0.639986 1_1:-45661575 Msa0023850:CDS
CGCGCCACCACAGTTTGTCG+GGG 0.645914 1_1:-45665242 Msa0023850:CDS
GGTGTTGAAACTGAAACCAT+AGG 0.645975 1_1:+45662071 None:intergenic
ACAAGGTTACCGGCGTGTGG+CGG 0.649540 1_1:+45665337 None:intergenic
AAAACAAGGTTACCGGCGTG+TGG 0.650178 1_1:+45665334 None:intergenic
ACTGCGGTTAGTGGAGAAGG+TGG 0.650559 1_1:-45664839 Msa0023850:CDS
ACGCGGAACAATTTGCACCA+AGG 0.650952 1_1:-45661767 Msa0023850:CDS
TGTACGCTTCTCTTACTGCA+GGG 0.650978 1_1:-45661345 Msa0023850:three_prime_UTR
GGTGGAGGGAAGTGTTGCCG+GGG 0.656423 1_1:+45665290 None:intergenic
GGAAATAGATGATACAATCG+GGG 0.660049 1_1:-45661502 Msa0023850:three_prime_UTR
CCTGATAATGTGTCACAATG+AGG 0.665244 1_1:+45661702 None:intergenic
CTAGGAAGAAGATTGGACAT+TGG 0.666627 1_1:-45661642 Msa0023850:CDS
AACTCAGCTGCCAATCACCC+CGG 0.666884 1_1:-45665307 Msa0023850:CDS
ACATGCTCAAGGGTCAGGCG+AGG 0.668836 1_1:-45665062 Msa0023850:CDS
TGTGAATAGATCAAAACATG+AGG 0.668986 1_1:+45666710 None:intergenic
GGGACCCCGACAAACTGTGG+TGG 0.673955 1_1:+45665238 None:intergenic
ACAAGAAAGAGTTCCAACCT+CGG 0.675024 1_1:-45662132 Msa0023850:CDS
AAAATCCGGTAACAATTGTG+CGG 0.678724 1_1:+45661548 None:intergenic
ATGTTGTACTGCATGCGCGG+TGG 0.691285 1_1:+45665157 None:intergenic
AATGCTTGGAGACCTCAAAG+AGG 0.697679 1_1:-45663146 Msa0023850:CDS
AATAATTCAGAAATCCAAGG+TGG 0.720775 1_1:-45665433 Msa0023850:CDS
GAAATAGATGATACAATCGG+GGG 0.724064 1_1:-45661501 Msa0023850:three_prime_UTR
GGAAATCGGAAGATTTGACG+CGG 0.730505 1_1:-45661784 Msa0023850:CDS
CCGCTGAATTAGGGTCGGCG+GGG 0.731123 1_1:+45665128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTCAAATTTATTTAATTTT+TGG - chr1_1:45663634-45663653 Msa0023850:intron 10.0%
!! AAAAAAAGGATAAAAAAAAA+CGG + chr1_1:45663952-45663971 None:intergenic 10.0%
!! AAAAAAAAGGATAAAAAAAA+CGG + chr1_1:45663953-45663972 None:intergenic 10.0%
!!! TTTTTATCCTTTTTTTTTTA+AGG - chr1_1:45664058-45664077 Msa0023850:intron 10.0%
!!! AAATCTAAAAACTAAAATTT+TGG + chr1_1:45664271-45664290 None:intergenic 10.0%
!! TTAAAAAATTACTAAATTGA+CGG + chr1_1:45665021-45665040 None:intergenic 10.0%
!! AAATATGAAAATGTAATTGA+GGG + chr1_1:45661007-45661026 None:intergenic 15.0%
!! AAAATATGAAAATGTAATTG+AGG + chr1_1:45661008-45661027 None:intergenic 15.0%
!! TAATATATATTTCTTAGCAT+AGG - chr1_1:45661063-45661082 Msa0023850:three_prime_UTR 15.0%
!!! TTTTTCATAATTGAAATTCT+GGG + chr1_1:45661374-45661393 None:intergenic 15.0%
!!! TTTTTTCATAATTGAAATTC+TGG + chr1_1:45661375-45661394 None:intergenic 15.0%
!! TTATATATATGATCTATGTT+TGG + chr1_1:45661507-45661526 None:intergenic 15.0%
!!! AAATAGAAATCTTTTGTTTT+TGG + chr1_1:45661691-45661710 None:intergenic 15.0%
!! ATTTCATCTATATCTTAATT+TGG - chr1_1:45662062-45662081 Msa0023850:CDS 15.0%
!!! AAAAGTATAATCAATTAACA+TGG + chr1_1:45662132-45662151 None:intergenic 15.0%
!! TAGATATAAAAAACATTATG+TGG + chr1_1:45662308-45662327 None:intergenic 15.0%
!!! AAGTAACAAAAATTTTTTGA+TGG - chr1_1:45662495-45662514 Msa0023850:intron 15.0%
!!! GAGTTAATTAAATTTAGTTT+TGG - chr1_1:45663264-45663283 Msa0023850:CDS 15.0%
!!! TTTACTTTTAAGTATGATTA+AGG - chr1_1:45663500-45663519 Msa0023850:intron 15.0%
!!! AGAATTTATGTTTTTTAGAA+TGG - chr1_1:45663532-45663551 Msa0023850:intron 15.0%
!! CATAAAAAAAAAAATATGCA+AGG - chr1_1:45663822-45663841 Msa0023850:intron 15.0%
!!! TTTATCCTTTTTTTTTTTGA+AGG - chr1_1:45663958-45663977 Msa0023850:intron 15.0%
!! ATTGTTTCCTTAAAAAAAAA+AGG + chr1_1:45664068-45664087 None:intergenic 15.0%
!! TGTTTCCTTAAAAAAAAAAA+CGG + chr1_1:45664164-45664183 None:intergenic 15.0%
!!! TAAAAACTAAAATTTTGGAA+AGG + chr1_1:45664266-45664285 None:intergenic 15.0%
!!! TCTATCATTTTAAAATTCTA+AGG - chr1_1:45664305-45664324 Msa0023850:intron 15.0%
!!! TCTATTTTTCTTTTTTTTTG+TGG + chr1_1:45664408-45664427 None:intergenic 15.0%
!! ATACTAAAAATGAATTAATG+TGG - chr1_1:45664479-45664498 Msa0023850:intron 15.0%
!!! TAAAAGAGATATTTTGATTA+AGG - chr1_1:45665141-45665160 Msa0023850:CDS 15.0%
!!! AAAAGAGATATTTTGATTAA+GGG - chr1_1:45665142-45665161 Msa0023850:CDS 15.0%
!! TTCAAAGTTGAAAAATATTA+TGG - chr1_1:45665427-45665446 Msa0023850:CDS 15.0%
!! TTATATCATAAAGTTTCAAT+TGG - chr1_1:45666878-45666897 Msa0023850:five_prime_UTR 15.0%
!! ATAAGAAAAATAAAAGAAAG+TGG + chr1_1:45666991-45667010 None:intergenic 15.0%
!! AATATGAAAATGTAATTGAG+GGG + chr1_1:45661006-45661025 None:intergenic 20.0%
!!! ATTTTTTGTCCATAAATGAT+TGG - chr1_1:45661400-45661419 Msa0023850:intron 20.0%
!! TCATATTATCCAATCATTTA+TGG + chr1_1:45661412-45661431 None:intergenic 20.0%
!! ACATAGATCATATATATAAG+AGG - chr1_1:45661508-45661527 Msa0023850:three_prime_UTR 20.0%
!! CTGTAAAATATATTATGCTT+TGG - chr1_1:45661625-45661644 Msa0023850:CDS 20.0%
!! AAAATATATTATGCTTTGGT+AGG - chr1_1:45661629-45661648 Msa0023850:CDS 20.0%
!!! AAAAGATTTCTATTTCTCAT+AGG - chr1_1:45661696-45661715 Msa0023850:CDS 20.0%
!!! TTTTCTTTTAGTACAGAAAA+AGG + chr1_1:45661928-45661947 None:intergenic 20.0%
!!! AAATTCTTTTAATCACATAG+TGG + chr1_1:45662025-45662044 None:intergenic 20.0%
!! AATTTGATAGGAACTAAATT+TGG + chr1_1:45663362-45663381 None:intergenic 20.0%
!! TTAATTCATGTTTGATTCTA+TGG + chr1_1:45663742-45663761 None:intergenic 20.0%
!! TGTTTCCTTCAAAAAAAAAA+AGG + chr1_1:45663966-45663985 None:intergenic 20.0%
!!! CTTAAAAAAAAAAACGGATT+CGG + chr1_1:45664158-45664177 None:intergenic 20.0%
!!! TCTTGCAAATACTTTTTTTA+TGG + chr1_1:45664363-45664382 None:intergenic 20.0%
!!! AATGTATTCAGGTTTTTTAT+TGG - chr1_1:45665105-45665124 Msa0023850:CDS 20.0%
!!! AAAGAGATATTTTGATTAAG+GGG - chr1_1:45665143-45665162 Msa0023850:CDS 20.0%
!!! GAGACATATTTCATATATTT+TGG + chr1_1:45665297-45665316 None:intergenic 20.0%
!! TATTGATCATGTTAACAATA+TGG - chr1_1:45665646-45665665 Msa0023850:intron 20.0%
!!! ATTATTAGTTGTTGTTTCAT+TGG + chr1_1:45666054-45666073 None:intergenic 20.0%
!! GAACAAATTTCAATGAAATT+TGG - chr1_1:45666074-45666093 Msa0023850:intron 20.0%
!!! ATTTTTGTAAGTTTTGAAGA+TGG - chr1_1:45666844-45666863 Msa0023850:five_prime_UTR 20.0%
!!! TTTTTGTAAGTTTTGAAGAT+GGG - chr1_1:45666845-45666864 Msa0023850:five_prime_UTR 20.0%
!! CATAAAACATATATTCTCAA+TGG + chr1_1:45666924-45666943 None:intergenic 20.0%
!!! CATTGAGAATATATGTTTTA+TGG - chr1_1:45666922-45666941 Msa0023850:five_prime_UTR 20.0%
!! TAAAAGAAAGTGGTAATAAT+TGG + chr1_1:45666981-45667000 None:intergenic 20.0%
!!! ATCTTTCTATAGCCTTTTTT+GGG + chr1_1:45661292-45661311 None:intergenic 25.0%
!!! TATCTTTCTATAGCCTTTTT+TGG + chr1_1:45661293-45661312 None:intergenic 25.0%
! AGATCATATATATAAGAGGT+TGG - chr1_1:45661512-45661531 Msa0023850:three_prime_UTR 25.0%
! TATAAGGACTTAAAAAGGAA+AGG + chr1_1:45661998-45662017 None:intergenic 25.0%
! GACTATATAAGGACTTAAAA+AGG + chr1_1:45662003-45662022 None:intergenic 25.0%
! TCTCAATAATTGAAGAAGAA+TGG + chr1_1:45662210-45662229 None:intergenic 25.0%
! AAATTCACAATTTGACATCT+TGG + chr1_1:45662390-45662409 None:intergenic 25.0%
! CATAATAATTCAGAAATCCA+AGG - chr1_1:45662529-45662548 Msa0023850:intron 25.0%
! GATGAAGTTGTTAATGTTAA+TGG - chr1_1:45663039-45663058 Msa0023850:intron 25.0%
! AAGTTGTTAATGTTAATGGT+GGG - chr1_1:45663043-45663062 Msa0023850:intron 25.0%
!!! GAAGAGTTTTGAGAAAAATA+AGG - chr1_1:45663086-45663105 Msa0023850:CDS 25.0%
! TTTGAGAAAAATAAGGTTGT+TGG - chr1_1:45663093-45663112 Msa0023850:CDS 25.0%
! CTTGAAAGAACAAATTTGAT+AGG + chr1_1:45663374-45663393 None:intergenic 25.0%
!!! TGTTTTTTTGACAGATAGAA+TGG - chr1_1:45663563-45663582 Msa0023850:intron 25.0%
!! GAATGGTTTTTATGCAAAAT+AGG - chr1_1:45663580-45663599 Msa0023850:intron 25.0%
! AAAAAAAAATATGCAAGGTC+TGG - chr1_1:45663827-45663846 Msa0023850:intron 25.0%
! AAAAAAAATATGCAAGGTCT+GGG - chr1_1:45663828-45663847 Msa0023850:intron 25.0%
!! AGGATAAAAAAAAACGGATT+CGG + chr1_1:45663946-45663965 None:intergenic 25.0%
!!! ATTGGTAATTTTTTTTGTGG+TGG + chr1_1:45664026-45664045 None:intergenic 25.0%
!! AAGGATAAAAAAAACGGATT+CGG + chr1_1:45664049-45664068 None:intergenic 25.0%
!!! TGTTCATTGGTTTTTTTTTG+TGG + chr1_1:45664126-45664145 None:intergenic 25.0%
!!! CGAATCCGTTTTTTTTTTTA+AGG - chr1_1:45664156-45664175 Msa0023850:intron 25.0%
!!! ACTAAAATTTTGGAAAGGAA+AGG + chr1_1:45664261-45664280 None:intergenic 25.0%
! ATGAATTAATGTGGTTTCTT+TGG - chr1_1:45664488-45664507 Msa0023850:intron 25.0%
! TGTTTAAAAGATGCAATTAC+CGG - chr1_1:45664660-45664679 Msa0023850:intron 25.0%
!!! AGGTTTTTTATTGGTTTTGA+TGG - chr1_1:45665114-45665133 Msa0023850:CDS 25.0%
!! TAAGTGACTAATTTGCAATT+TGG - chr1_1:45665191-45665210 Msa0023850:CDS 25.0%
! TTGCAATTTGGTAAATTTCA+AGG - chr1_1:45665203-45665222 Msa0023850:CDS 25.0%
!! TTTGGTCACTAATTTAACTT+TGG + chr1_1:45665279-45665298 None:intergenic 25.0%
!! CTAATTTTATTACCAAGTGT+TGG - chr1_1:45665316-45665335 Msa0023850:CDS 25.0%
! TCATCAAAATTGTCAAAAAC+AGG + chr1_1:45665403-45665422 None:intergenic 25.0%
!!! TTGTTTGGAATTGAAACTTT+TGG + chr1_1:45665868-45665887 None:intergenic 25.0%
! TTATTATTACCTGAAAACCT+TGG + chr1_1:45666218-45666237 None:intergenic 25.0%
!!! AGGTTTTCAGGTAATAATAA+TGG - chr1_1:45666218-45666237 Msa0023850:intron 25.0%
! TGAAATCTATGTGTTTACTT+CGG - chr1_1:45666686-45666705 Msa0023850:intron 25.0%
! TTGTAGTGTATAAAGAAAGA+AGG - chr1_1:45666723-45666742 Msa0023850:five_prime_UTR 25.0%
! TGTATAAAGAAAGAAGGAAT+TGG - chr1_1:45666729-45666748 Msa0023850:five_prime_UTR 25.0%
! GAATTGGATTATTCTAGTAT+AGG - chr1_1:45666745-45666764 Msa0023850:five_prime_UTR 25.0%
!!! TTAGAACTATTTTTTTGGGG+GGG + chr1_1:45661155-45661174 None:intergenic 30.0%
!!! CTTAGAACTATTTTTTTGGG+GGG + chr1_1:45661156-45661175 None:intergenic 30.0%
!!! CCTTAGAACTATTTTTTTGG+GGG + chr1_1:45661157-45661176 None:intergenic 30.0%
!!! CCCTTAGAACTATTTTTTTG+GGG + chr1_1:45661158-45661177 None:intergenic 30.0%
!! CCCCAAAAAAATAGTTCTAA+GGG - chr1_1:45661155-45661174 Msa0023850:three_prime_UTR 30.0%
!!! CCCCTTAGAACTATTTTTTT+GGG + chr1_1:45661159-45661178 None:intergenic 30.0%
!! CCCAAAAAAATAGTTCTAAG+GGG - chr1_1:45661156-45661175 Msa0023850:three_prime_UTR 30.0%
!! CCAAAAAAATAGTTCTAAGG+GGG - chr1_1:45661157-45661176 Msa0023850:three_prime_UTR 30.0%
TGTGAATAGATCAAAACATG+AGG + chr1_1:45661258-45661277 None:intergenic 30.0%
!!! TCATGTTTTGATCTATTCAC+AGG - chr1_1:45661257-45661276 Msa0023850:three_prime_UTR 30.0%
!!! TCTTTCTATAGCCTTTTTTG+GGG + chr1_1:45661291-45661310 None:intergenic 30.0%
! AAGCTTTTTACAAAGGATAG+TGG + chr1_1:45661956-45661975 None:intergenic 30.0%
!! ATCACATAGTGGACTATATA+AGG + chr1_1:45662014-45662033 None:intergenic 30.0%
! ACATTTTACCTTTGTGAATC+TGG + chr1_1:45662269-45662288 None:intergenic 30.0%
AATAATTCAGAAATCCAAGG+TGG - chr1_1:45662532-45662551 Msa0023850:intron 30.0%
TCATGAAAATGAGTGTTTGA+AGG + chr1_1:45662567-45662586 None:intergenic 30.0%
GAAGTTGTTAATGTTAATGG+TGG - chr1_1:45663042-45663061 Msa0023850:intron 30.0%
! TAATGTTAATGGTGGGATTA+AGG - chr1_1:45663050-45663069 Msa0023850:intron 30.0%
GTTAATTAACATGCTTGATG+AGG - chr1_1:45663233-45663252 Msa0023850:CDS 30.0%
! GTTCTTTCAAGTAATTGAGT+TGG - chr1_1:45663383-45663402 Msa0023850:CDS 30.0%
ATTCATGTTTGATTCTATGG+TGG + chr1_1:45663739-45663758 None:intergenic 30.0%
AAAAAAATATGCAAGGTCTG+GGG - chr1_1:45663829-45663848 Msa0023850:intron 30.0%
!!! TTTTTTTTTTGTGATGGTCG+GGG + chr1_1:45663889-45663908 None:intergenic 30.0%
!!! GTTTTTTTTTTGTGATGGTC+GGG + chr1_1:45663890-45663909 None:intergenic 30.0%
!!! GGTTTTTTTTTTGTGATGGT+CGG + chr1_1:45663891-45663910 None:intergenic 30.0%
!!! CATGGGTTTTTTTTTTGTGA+TGG + chr1_1:45663895-45663914 None:intergenic 30.0%
!!! TAATTTTTTTTGTGGTGGCT+GGG + chr1_1:45664021-45664040 None:intergenic 30.0%
!!! CGGATTGGTAATTTTTTTTG+TGG + chr1_1:45664029-45664048 None:intergenic 30.0%
! TAAAAAAAACGGATTCGGAT+TGG + chr1_1:45664044-45664063 None:intergenic 30.0%
! AAAAAAAAACGGATTCGGAT+TGG + chr1_1:45663941-45663960 None:intergenic 30.0%
!! AAAATTTTGGAAAGGAAAGG+AGG + chr1_1:45664258-45664277 None:intergenic 30.0%
!!! TTTGGATTGTTTTGGTTTGA+AGG - chr1_1:45664506-45664525 Msa0023850:intron 30.0%
!! TTTTATTCGCAGCTCTAATT+TGG + chr1_1:45664686-45664705 None:intergenic 30.0%
ACAAAGAGCTATTCAACAAT+TGG - chr1_1:45664782-45664801 Msa0023850:CDS 30.0%
CAAAGAGCTATTCAACAATT+GGG - chr1_1:45664783-45664802 Msa0023850:CDS 30.0%
! AAAAGTATAGCGAGTACTTA+CGG + chr1_1:45664903-45664922 None:intergenic 30.0%
TCATTGAAGTCAATGTATTC+AGG - chr1_1:45665094-45665113 Msa0023850:CDS 30.0%
TTCGATCGTCGAATTTATAA+TGG + chr1_1:45665243-45665262 None:intergenic 30.0%
! TAAAATTAGTCTCCAACACT+TGG + chr1_1:45665331-45665350 None:intergenic 30.0%
CACTAAATAAAGAAGTAAGG+AGG + chr1_1:45665562-45665581 None:intergenic 30.0%
CGACACTAAATAAAGAAGTA+AGG + chr1_1:45665565-45665584 None:intergenic 30.0%
CATGTTAACAATATGGTAAC+AGG - chr1_1:45665653-45665672 Msa0023850:intron 30.0%
TATGGTAACAGGTTTCAAAT+TGG - chr1_1:45665664-45665683 Msa0023850:intron 30.0%
TTTCATTGAAGGATCTTCAT+CGG + chr1_1:45665802-45665821 None:intergenic 30.0%
GTGAATGTTAGAAACAATTC+AGG - chr1_1:45665936-45665955 Msa0023850:intron 30.0%
TAGAGATGGTTATTGTTTCA+TGG - chr1_1:45666112-45666131 Msa0023850:intron 30.0%
AGAGATGGTTATTGTTTCAT+GGG - chr1_1:45666113-45666132 Msa0023850:intron 30.0%
AACCAAACTAATTTCATTGC+TGG - chr1_1:45666137-45666156 Msa0023850:intron 30.0%
AACCAGCAATGAAATTAGTT+TGG + chr1_1:45666142-45666161 None:intergenic 30.0%
!!! ACTAATTTCATTGCTGGTTT+TGG - chr1_1:45666143-45666162 Msa0023850:intron 30.0%
CTTATTTATGCCACAAAATC+CGG + chr1_1:45666434-45666453 None:intergenic 30.0%
TGGCATAAATAAGACATTGA+AGG - chr1_1:45666441-45666460 Msa0023850:intron 30.0%
GGCATAAATAAGACATTGAA+GGG - chr1_1:45666442-45666461 Msa0023850:intron 30.0%
AGGGAAATAGATGATACAAT+CGG - chr1_1:45666461-45666480 Msa0023850:five_prime_UTR 30.0%
TGTTCGATCTAAATCAATGA+CGG - chr1_1:45666534-45666553 Msa0023850:intron 30.0%
GAAATCTATGTGTTTACTTC+GGG - chr1_1:45666687-45666706 Msa0023850:intron 30.0%
AAATCTATGTGTTTACTTCG+GGG - chr1_1:45666688-45666707 Msa0023850:intron 30.0%
ATGCTATCTAAGAACTCAAA+TGG + chr1_1:45666789-45666808 None:intergenic 30.0%
! TTTGAGTTCTTAGATAGCAT+AGG - chr1_1:45666789-45666808 Msa0023850:five_prime_UTR 30.0%
TTGAGTTCTTAGATAGCATA+GGG - chr1_1:45666790-45666809 Msa0023850:five_prime_UTR 30.0%
! CATAGGGATTTGAAAGTATA+TGG - chr1_1:45666806-45666825 Msa0023850:five_prime_UTR 30.0%
! GATTTGAAAGTATATGGTTG+AGG - chr1_1:45666812-45666831 Msa0023850:five_prime_UTR 30.0%
! CCCCCAAAAAAATAGTTCTA+AGG - chr1_1:45661154-45661173 Msa0023850:three_prime_UTR 35.0%
!!! CCCCCTTAGAACTATTTTTT+TGG + chr1_1:45661160-45661179 None:intergenic 35.0%
!!! CTTTCTATAGCCTTTTTTGG+GGG + chr1_1:45661290-45661309 None:intergenic 35.0%
ATTCAACTTTCAGTTGCAAG+TGG - chr1_1:45661460-45661479 Msa0023850:three_prime_UTR 35.0%
CAATTTACATCACAATCTGC+AGG - chr1_1:45661782-45661801 Msa0023850:CDS 35.0%
! CACATGGAAGCTTTTTACAA+AGG + chr1_1:45661963-45661982 None:intergenic 35.0%
AAGGAATGATGAGATACACA+TGG + chr1_1:45661979-45661998 None:intergenic 35.0%
TTTACCTTTGTGAATCTGGT+TGG + chr1_1:45662265-45662284 None:intergenic 35.0%
! CTCATTTTCATGAATCCATC+AGG - chr1_1:45662574-45662593 Msa0023850:intron 35.0%
GAGTAATTGATGTAACCTGA+TGG + chr1_1:45662592-45662611 None:intergenic 35.0%
GTTGAGAAAAACAAGGTTAC+CGG + chr1_1:45662641-45662660 None:intergenic 35.0%
TCATTAAGCTTACATGCTCA+AGG - chr1_1:45662892-45662911 Msa0023850:intron 35.0%
CATTAAGCTTACATGCTCAA+GGG - chr1_1:45662893-45662912 Msa0023850:intron 35.0%
!! CAAGTAATTGAGTTGGTAAC+TGG - chr1_1:45663390-45663409 Msa0023850:CDS 35.0%
GTTGGTCATGGGTTTAATAA+AGG + chr1_1:45663765-45663784 None:intergenic 35.0%
!! TCGGATTGGTAATTGTTCAT+GGG + chr1_1:45663912-45663931 None:intergenic 35.0%
!! TTCGGATTGGTAATTGTTCA+TGG + chr1_1:45663913-45663932 None:intergenic 35.0%
! AAAAACGGATTCGGATTGAA+CGG + chr1_1:45663937-45663956 None:intergenic 35.0%
AAACAATTACCAATCCTGCA+AGG - chr1_1:45663981-45664000 Msa0023850:intron 35.0%
!!! AATTTTTTTTGTGGTGGCTG+GGG + chr1_1:45664020-45664039 None:intergenic 35.0%
!!! GTAATTTTTTTTGTGGTGGC+TGG + chr1_1:45664022-45664041 None:intergenic 35.0%
AAACAATTACCAATCCTGCA+AGG - chr1_1:45663981-45664000 Msa0023850:intron 35.0%
!!! ATTGGTTTTTTTTTGTGGCC+GGG + chr1_1:45664121-45664140 None:intergenic 35.0%
!!! CATTGGTTTTTTTTTGTGGC+CGG + chr1_1:45664122-45664141 None:intergenic 35.0%
!! TCGGATTGGTAATTGTTCAT+TGG + chr1_1:45663912-45663931 None:intergenic 35.0%
TGTGCTAGTAACAAGTGAAA+TGG - chr1_1:45664226-45664245 Msa0023850:intron 35.0%
! GTGGTTTCTTTGGATTGTTT+TGG - chr1_1:45664498-45664517 Msa0023850:intron 35.0%
ATATCACAACCAAATGCAGA+TGG - chr1_1:45664548-45664567 Msa0023850:intron 35.0%
TTTGAACAAGTTGCAGGAAT+TGG - chr1_1:45664582-45664601 Msa0023850:intron 35.0%
AGAGATTGTTTGTAGTGCTA+GGG + chr1_1:45664628-45664647 None:intergenic 35.0%
TAGAGATTGTTTGTAGTGCT+AGG + chr1_1:45664629-45664648 None:intergenic 35.0%
TTAGGAGAAGATGATAGCTT+TGG - chr1_1:45664708-45664727 Msa0023850:intron 35.0%
GAATGATCCATCATAATGCT+TGG - chr1_1:45664805-45664824 Msa0023850:CDS 35.0%
AGAACAGAAACAGATCTTTC+AGG + chr1_1:45664849-45664868 None:intergenic 35.0%
TATTCGAAGGACTGAAATGA+CGG + chr1_1:45664989-45665008 None:intergenic 35.0%
TCAGTCCTTCGAATAGTATA+AGG - chr1_1:45664994-45665013 Msa0023850:CDS 35.0%
GTGCTGAAACAATATGTGTT+TGG - chr1_1:45665465-45665484 Msa0023850:exon 35.0%
ATGTGTTTGTCTGAATCCTT+GGG + chr1_1:45665501-45665520 None:intergenic 35.0%
CAAAACAAACAGGACTTACT+AGG - chr1_1:45665526-45665545 Msa0023850:intron 35.0%
ATGTACATTTCTTCCACCAT+TGG + chr1_1:45665720-45665739 None:intergenic 35.0%
! AATGGTGGAAGAAATGTACA+TGG - chr1_1:45665719-45665738 Msa0023850:intron 35.0%
AATGTACATGGAAGAGATGA+AGG - chr1_1:45665731-45665750 Msa0023850:intron 35.0%
ATGAAGGATCAAGAGATGAA+TGG - chr1_1:45665747-45665766 Msa0023850:intron 35.0%
TTCCAAACAAGACATTCCTA+TGG - chr1_1:45665878-45665897 Msa0023850:intron 35.0%
! AACCATAGGAATGTCTTGTT+TGG + chr1_1:45665883-45665902 None:intergenic 35.0%
TTTCTAACATTCACACCAAC+AGG + chr1_1:45665930-45665949 None:intergenic 35.0%
TCGGTGATTGAAGAATTTCA+TGG + chr1_1:45666019-45666038 None:intergenic 35.0%
GATGATAGACAAAGTAGAGA+TGG - chr1_1:45666098-45666117 Msa0023850:intron 35.0%
!!! TGGTTTTGGTCAATATCCAA+TGG - chr1_1:45666157-45666176 Msa0023850:intron 35.0%
! TTTTGGTCAATATCCAATGG+AGG - chr1_1:45666160-45666179 Msa0023850:intron 35.0%
CAATATCCAATGGAGGAAAT+CGG - chr1_1:45666167-45666186 Msa0023850:intron 35.0%
! TTCTTCCTAGTTGGATGTTT+TGG + chr1_1:45666313-45666332 None:intergenic 35.0%
ATTGGCGAAACAAATGAGTT+TGG - chr1_1:45666341-45666360 Msa0023850:intron 35.0%
AAAATCCGGTAACAATTGTG+CGG + chr1_1:45666420-45666439 None:intergenic 35.0%
! ACAATTGTTACCGGATTTTG+TGG - chr1_1:45666421-45666440 Msa0023850:intron 35.0%
GGGAAATAGATGATACAATC+GGG - chr1_1:45666462-45666481 Msa0023850:five_prime_UTR 35.0%
GGAAATAGATGATACAATCG+GGG - chr1_1:45666463-45666482 Msa0023850:five_prime_UTR 35.0%
GAAATAGATGATACAATCGG+GGG - chr1_1:45666464-45666483 Msa0023850:five_prime_UTR 35.0%
! AGAAGCGTACATTTACATGT+TGG + chr1_1:45666611-45666630 None:intergenic 35.0%
GAGAAACACAATCATTGCTA+TGG + chr1_1:45666655-45666674 None:intergenic 35.0%
! AACTCAAATGGTTCTATGCA+GGG + chr1_1:45666777-45666796 None:intergenic 35.0%
!!! AGTTTTGAAGATGGGATAGA+TGG - chr1_1:45666853-45666872 Msa0023850:five_prime_UTR 35.0%
!!! GTTTTGAAGATGGGATAGAT+GGG - chr1_1:45666854-45666873 Msa0023850:five_prime_UTR 35.0%
AACTTTCAGTTGCAAGTGGA+AGG - chr1_1:45661464-45661483 Msa0023850:three_prime_UTR 40.0%
!! TCTGGTTGGTGTGTTATTTG+TGG + chr1_1:45662251-45662270 None:intergenic 40.0%
! CAGCTGAGTTGAGAAAAACA+AGG + chr1_1:45662648-45662667 None:intergenic 40.0%
!! ATAAGTTCTGGTGTTGTTGG+TGG + chr1_1:45662699-45662718 None:intergenic 40.0%
!! GAGATAAGTTCTGGTGTTGT+TGG + chr1_1:45662702-45662721 None:intergenic 40.0%
TGTTGGAGAATCTTCAACTG+CGG - chr1_1:45663110-45663129 Msa0023850:CDS 40.0%
!!! TTGGTTTTTTTTTGTGGCCG+GGG + chr1_1:45664120-45664139 None:intergenic 40.0%
GTTGTGATCACTACTAGGAT+TGG + chr1_1:45664191-45664210 None:intergenic 40.0%
TGTGAGTTGTGATCACTACT+AGG + chr1_1:45664196-45664215 None:intergenic 40.0%
!!! GGATTGTTTTGGTTTGAAGG+TGG - chr1_1:45664509-45664528 Msa0023850:intron 40.0%
TCCTCATTTGAACAAGTTGC+AGG - chr1_1:45664576-45664595 Msa0023850:intron 40.0%
! TCCTGCAACTTGTTCAAATG+AGG + chr1_1:45664580-45664599 None:intergenic 40.0%
AGAGCTGCGAATAAAAGCTT+AGG - chr1_1:45664690-45664709 Msa0023850:intron 40.0%
! AGCTTTGGTGGCAAAATTGA+AGG - chr1_1:45664723-45664742 Msa0023850:intron 40.0%
! GCTTTGGTGGCAAAATTGAA+GGG - chr1_1:45664724-45664743 Msa0023850:intron 40.0%
ACGGACCTTATACTATTCGA+AGG + chr1_1:45665002-45665021 None:intergenic 40.0%
! GTTTGGTTTCAGTTATCCCA+AGG - chr1_1:45665482-45665501 Msa0023850:intron 40.0%
CATGTGTTTGTCTGAATCCT+TGG + chr1_1:45665502-45665521 None:intergenic 40.0%
CACATGCTTGCAAAACAAAC+AGG - chr1_1:45665516-45665535 Msa0023850:intron 40.0%
AAAGAAGTAAGGAGGTTACC+TGG + chr1_1:45665554-45665573 None:intergenic 40.0%
TAAATGCTCGAGTTCGTCTT+TGG - chr1_1:45665691-45665710 Msa0023850:intron 40.0%
! AGTTCGTCTTTGGAAACCAA+TGG - chr1_1:45665701-45665720 Msa0023850:intron 40.0%
! TCAAGAGATGAATGGTTCTG+AGG - chr1_1:45665755-45665774 Msa0023850:intron 40.0%
!!! GGAGTTGGTGTTTTCATTGA+AGG + chr1_1:45665813-45665832 None:intergenic 40.0%
ACAAGAAAGAGTTCCAACCT+CGG - chr1_1:45665833-45665852 Msa0023850:intron 40.0%
! ACTTTTGGATTCTGTTTCCG+AGG + chr1_1:45665853-45665872 None:intergenic 40.0%
! GGTGTTGAAACTGAAACCAT+AGG + chr1_1:45665897-45665916 None:intergenic 40.0%
CAATTCAGGATTCAGCTTCA+CGG - chr1_1:45665950-45665969 Msa0023850:intron 40.0%
TCATTGGACTTCGCATGATT+CGG + chr1_1:45666038-45666057 None:intergenic 40.0%
AATCTTCCGATTTCCTCCAT+TGG + chr1_1:45666176-45666195 None:intergenic 40.0%
! CAATTTGCACCAAGGTTTTC+AGG - chr1_1:45666206-45666225 Msa0023850:five_prime_UTR 40.0%
AATGGTGTTTCACTCACTCT+TGG - chr1_1:45666236-45666255 Msa0023850:intron 40.0%
! CCTGATAATGTGTCACAATG+AGG + chr1_1:45666266-45666285 None:intergenic 40.0%
CCTCATTGTGACACATTATC+AGG - chr1_1:45666263-45666282 Msa0023850:intron 40.0%
!!! CCTAGTTGGATGTTTTGGTT+TGG + chr1_1:45666308-45666327 None:intergenic 40.0%
CCAAACCAAAACATCCAACT+AGG - chr1_1:45666305-45666324 Msa0023850:intron 40.0%
CATCCAACTAGGAAGAAGAT+TGG - chr1_1:45666316-45666335 Msa0023850:intron 40.0%
TGTCCAATCTTCTTCCTAGT+TGG + chr1_1:45666322-45666341 None:intergenic 40.0%
CTAGGAAGAAGATTGGACAT+TGG - chr1_1:45666323-45666342 Msa0023850:intron 40.0%
TCAACATGCAGAATCCAAAG+AGG - chr1_1:45666390-45666409 Msa0023850:intron 40.0%
! GAACTCAAATGGTTCTATGC+AGG + chr1_1:45666778-45666797 None:intergenic 40.0%
!! ATAGTTCTAAGGGGGTTGCT+TGG - chr1_1:45661165-45661184 Msa0023850:three_prime_UTR 45.0%
AGGTACTTCTCCCCCAAAAA+AGG - chr1_1:45661277-45661296 Msa0023850:three_prime_UTR 45.0%
CACACCAACCAGATTCACAA+AGG - chr1_1:45662258-45662277 Msa0023850:CDS 45.0%
!! GAAATCCAAGGTGGTTCTGA+CGG - chr1_1:45662541-45662560 Msa0023850:intron 45.0%
TCGGCAGAACAATCAGTACA+TGG - chr1_1:45662754-45662773 Msa0023850:intron 45.0%
ATCAGTACATGGCCATCATG+AGG - chr1_1:45662765-45662784 Msa0023850:intron 45.0%
GCAAAGCAGAAACCTCATGA+TGG + chr1_1:45662780-45662799 None:intergenic 45.0%
CATGAGGTTTCTGCTTTGCA+TGG - chr1_1:45662781-45662800 Msa0023850:intron 45.0%
TGCTTCAAACGGCTGTGTTT+CGG - chr1_1:45662960-45662979 Msa0023850:intron 45.0%
GAATCTTCAACTGCGGTTAG+TGG - chr1_1:45663117-45663136 Msa0023850:CDS 45.0%
!! TCTGTTGGTGGTGATGGAAA+TGG - chr1_1:45663150-45663169 Msa0023850:CDS 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr1_1:45663793-45663812 Msa0023850:intron 45.0%
! GGATTCGGATTGAACGGATT+CGG + chr1_1:45663931-45663950 None:intergenic 45.0%
ATTACCAATCCTGCAAGGTC+CGG - chr1_1:45663986-45664005 Msa0023850:intron 45.0%
AGGAGATCACCATCTGCATT+TGG + chr1_1:45664560-45664579 None:intergenic 45.0%
! ATTCGCAGCTCTAATTTGGC+CGG + chr1_1:45664682-45664701 None:intergenic 45.0%
!! GGAGAAGATGATAGCTTTGG+TGG - chr1_1:45664711-45664730 Msa0023850:intron 45.0%
GTGGCAAAATTGAAGGGTCT+AGG - chr1_1:45664730-45664749 Msa0023850:intron 45.0%
GAGGTCTCCAAGCATTATGA+TGG + chr1_1:45664815-45664834 None:intergenic 45.0%
AATGCTTGGAGACCTCAAAG+AGG - chr1_1:45664819-45664838 Msa0023850:CDS 45.0%
CTTTCAGGCAATCCTCTTTG+AGG + chr1_1:45664834-45664853 None:intergenic 45.0%
!! CTGTTTCTGTTCTTCGTGCT+TGG - chr1_1:45664856-45664875 Msa0023850:CDS 45.0%
GTATAGCGAGTACTTACGGA+TGG + chr1_1:45664899-45664918 None:intergenic 45.0%
! TCGTCTTTGGAAACCAATGG+TGG - chr1_1:45665704-45665723 Msa0023850:intron 45.0%
GGAACTCTTTCTTGTGGAGT+TGG + chr1_1:45665828-45665847 None:intergenic 45.0%
GAGGTTGGAACTCTTTCTTG+TGG + chr1_1:45665834-45665853 None:intergenic 45.0%
TTGGATTCTGTTTCCGAGGT+TGG + chr1_1:45665849-45665868 None:intergenic 45.0%
ACACCATCAACTTCACCTGT+TGG - chr1_1:45665912-45665931 Msa0023850:intron 45.0%
ACACCAACAGGTGAAGTTGA+TGG + chr1_1:45665918-45665937 None:intergenic 45.0%
AAGCAAGTCCAAAGCGAACA+AGG - chr1_1:45665991-45666010 Msa0023850:intron 45.0%
TCATGGTTCCTTGTTCGCTT+TGG + chr1_1:45666002-45666021 None:intergenic 45.0%
GGAAATCGGAAGATTTGACG+CGG - chr1_1:45666181-45666200 Msa0023850:intron 45.0%
AATTGTGCGGCAAACCTCTT+TGG + chr1_1:45666407-45666426 None:intergenic 45.0%
GTTTGCCGCACAATTGTTAC+CGG - chr1_1:45666412-45666431 Msa0023850:intron 45.0%
GATGATACAATCGGGGGAAA+TGG - chr1_1:45666470-45666489 Msa0023850:five_prime_UTR 45.0%
ATGTACGCTTCTCTTACTGC+AGG - chr1_1:45666619-45666638 Msa0023850:intron 45.0%
TGTACGCTTCTCTTACTGCA+GGG - chr1_1:45666620-45666639 Msa0023850:intron 45.0%
TTCTCTTACTGCAGGGAATC+TGG - chr1_1:45666627-45666646 Msa0023850:intron 45.0%
!! AAAAAAAAAAAAACAATATT+AGG + chr1_1:45663324-45663343 None:intergenic 5.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr1_1:45661111-45661130 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_1:45661110-45661129 None:intergenic 50.0%
AAAACAAGGTTACCGGCGTG+TGG + chr1_1:45662634-45662653 None:intergenic 50.0%
!! AGTTCTGGTGTTGTTGGTGG+TGG + chr1_1:45662696-45662715 None:intergenic 50.0%
CTGATTGTTCTGCCGAGAGT+GGG + chr1_1:45662750-45662769 None:intergenic 50.0%
ACTGATTGTTCTGCCGAGAG+TGG + chr1_1:45662751-45662770 None:intergenic 50.0%
CACATGTTGTACTGCATGCG+CGG + chr1_1:45662814-45662833 None:intergenic 50.0%
AGCTTACATGCTCAAGGGTC+AGG - chr1_1:45662898-45662917 Msa0023850:intron 50.0%
TCGGGTTCGTCTGCTTCAAA+CGG - chr1_1:45662949-45662968 Msa0023850:intron 50.0%
GCTTCAAACGGCTGTGTTTC+GGG - chr1_1:45662961-45662980 Msa0023850:intron 50.0%
CTTCAAACGGCTGTGTTTCG+GGG - chr1_1:45662962-45662981 Msa0023850:intron 50.0%
TCAACTGCGGTTAGTGGAGA+AGG - chr1_1:45663123-45663142 Msa0023850:CDS 50.0%
! AGTGGAGAAGGTGGTTCTGT+TGG - chr1_1:45663135-45663154 Msa0023850:CDS 50.0%
TCACGAGGACAGTTGGTCAT+GGG + chr1_1:45663776-45663795 None:intergenic 50.0%
! CGGATTGAACGGATTCGGAT+TGG + chr1_1:45663926-45663945 None:intergenic 50.0%
TTACCAATCCTGCAAGGTCC+GGG - chr1_1:45663987-45664006 Msa0023850:intron 50.0%
TTGTAGTGCTAGGGCAGTGT+AGG + chr1_1:45664619-45664638 None:intergenic 50.0%
AACAGGACTTACTAGGAGCC+AGG - chr1_1:45665533-45665552 Msa0023850:intron 50.0%
ACGCGGAACAATTTGCACCA+AGG - chr1_1:45666198-45666217 Msa0023850:five_prime_UTR 50.0%
TGCGAGATGCAATCATCGCA+AGG + chr1_1:45666499-45666518 None:intergenic 50.0%
AACTCAGCTGCCAATCACCC+CGG - chr1_1:45662658-45662677 Msa0023850:intron 55.0%
!! CTGGTGTTGTTGGTGGTGGA+GGG + chr1_1:45662692-45662711 None:intergenic 55.0%
!! TCTGGTGTTGTTGGTGGTGG+AGG + chr1_1:45662693-45662712 None:intergenic 55.0%
GTGGCGCGTGAGATAAGTTC+TGG + chr1_1:45662711-45662730 None:intergenic 55.0%
TGTTGTACTGCATGCGCGGT+GGG + chr1_1:45662810-45662829 None:intergenic 55.0%
ATGTTGTACTGCATGCGCGG+TGG + chr1_1:45662811-45662830 None:intergenic 55.0%
CGCGCATGCAGTACAACATG+TGG - chr1_1:45662812-45662831 Msa0023850:intron 55.0%
CTTCACGCGCCGCTGAATTA+GGG + chr1_1:45662849-45662868 None:intergenic 55.0%
TGAAGCTACACGCGCTACTC+AGG - chr1_1:45662864-45662883 Msa0023850:intron 55.0%
GAAGCTACACGCGCTACTCA+GGG - chr1_1:45662865-45662884 Msa0023850:intron 55.0%
ACTGCGGTTAGTGGAGAAGG+TGG - chr1_1:45663126-45663145 Msa0023850:CDS 55.0%
! GGAGAAGGTGGTTCTGTTGG+TGG - chr1_1:45663138-45663157 Msa0023850:CDS 55.0%
!! GGTGGTTCTGTTGGTGGTGA+TGG - chr1_1:45663144-45663163 Msa0023850:CDS 55.0%
CTCACGAGGACAGTTGGTCA+TGG + chr1_1:45663777-45663796 None:intergenic 55.0%
GCTAAGCTCACGAGGACAGT+TGG + chr1_1:45663783-45663802 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_1:45663791-45663810 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_1:45663788-45663807 Msa0023850:intron 55.0%
TACCAATCCTGCAAGGTCCG+AGG - chr1_1:45663988-45664007 Msa0023850:intron 55.0%
AACCTCGGACCTTGCAGGAT+TGG + chr1_1:45663993-45664012 None:intergenic 55.0%
TACCAATCCTGCAAGGTCCG+GGG - chr1_1:45663988-45664007 Msa0023850:intron 55.0%
GAAGGCCGTCAGAACCACCT+TGG + chr1_1:45662549-45662568 None:intergenic 60.0%
ACAAGGTTACCGGCGTGTGG+CGG + chr1_1:45662631-45662650 None:intergenic 60.0%
!! GGAAGTGTTGCCGGGGTGAT+TGG + chr1_1:45662671-45662690 None:intergenic 60.0%
!! TGGTGGAGGGAAGTGTTGCC+GGG + chr1_1:45662679-45662698 None:intergenic 60.0%
!! GTGGTGGAGGGAAGTGTTGC+CGG + chr1_1:45662680-45662699 None:intergenic 60.0%
CACGCGCCACCACAGTTTGT+CGG - chr1_1:45662721-45662740 Msa0023850:intron 60.0%
ACGCGCCACCACAGTTTGTC+GGG - chr1_1:45662722-45662741 Msa0023850:intron 60.0%
AGTGGGACCCCGACAAACTG+TGG + chr1_1:45662733-45662752 None:intergenic 60.0%
GTTTGTCGGGGTCCCACTCT+CGG - chr1_1:45662735-45662754 Msa0023850:intron 60.0%
ACGCGCCGCTGAATTAGGGT+CGG + chr1_1:45662845-45662864 None:intergenic 60.0%
GCTTCACGCGCCGCTGAATT+AGG + chr1_1:45662850-45662869 None:intergenic 60.0%
ACATGCTCAAGGGTCAGGCG+AGG - chr1_1:45662903-45662922 Msa0023850:intron 60.0%
ACGCGCGTGTTCCCATTGGT+GGG - chr1_1:45662926-45662945 Msa0023850:intron 60.0%
! GCGTGTTCCCATTGGTGGGT+CGG - chr1_1:45662930-45662949 Msa0023850:intron 60.0%
! CGTGTTCCCATTGGTGGGTC+GGG - chr1_1:45662931-45662950 Msa0023850:intron 60.0%
GACGAACCCGACCCACCAAT+GGG + chr1_1:45662940-45662959 None:intergenic 60.0%
AGACGAACCCGACCCACCAA+TGG + chr1_1:45662941-45662960 None:intergenic 60.0%
GAACCCCTGCCACCACAATC+CGG - chr1_1:45663855-45663874 Msa0023850:intron 60.0%
AACCCCTGCCACCACAATCC+GGG - chr1_1:45663856-45663875 Msa0023850:intron 60.0%
AACCCCGGATTGTGGTGGCA+GGG + chr1_1:45663862-45663881 None:intergenic 60.0%
GTTCGAACCCCGGATTGTGG+TGG + chr1_1:45663867-45663886 None:intergenic 60.0%
GTTCGAACCTCGGACCTTGC+AGG + chr1_1:45663998-45664017 None:intergenic 60.0%
AACCCCGGACCTTGCAGGAT+TGG + chr1_1:45664093-45664112 None:intergenic 60.0%
!! GGTGGAGGGAAGTGTTGCCG+GGG + chr1_1:45662678-45662697 None:intergenic 65.0%
CGCGCCACCACAGTTTGTCG+GGG - chr1_1:45662723-45662742 Msa0023850:intron 65.0%
GGGACCCCGACAAACTGTGG+TGG + chr1_1:45662730-45662749 None:intergenic 65.0%
CCGCTGAATTAGGGTCGGCG+GGG + chr1_1:45662840-45662859 None:intergenic 65.0%
CCCCGCCGACCCTAATTCAG+CGG - chr1_1:45662837-45662856 Msa0023850:intron 65.0%
GCCGCTGAATTAGGGTCGGC+GGG + chr1_1:45662841-45662860 None:intergenic 65.0%
CGCCGCTGAATTAGGGTCGG+CGG + chr1_1:45662842-45662861 None:intergenic 65.0%
GAGGACGCGCGTGTTCCCAT+TGG - chr1_1:45662922-45662941 Msa0023850:intron 65.0%
GACGCGCGTGTTCCCATTGG+TGG - chr1_1:45662925-45662944 Msa0023850:intron 65.0%
ACCCCTGCCACCACAATCCG+GGG - chr1_1:45663857-45663876 Msa0023850:intron 65.0%
ACCCCGGATTGTGGTGGCAG+GGG + chr1_1:45663861-45663880 None:intergenic 65.0%
GAACCCCGGATTGTGGTGGC+AGG + chr1_1:45663863-45663882 None:intergenic 65.0%
GGGGTTCGAACCCCGGATTG+TGG + chr1_1:45663870-45663889 None:intergenic 65.0%
GATGGTCGGGGTTCGAACCC+CGG + chr1_1:45663877-45663896 None:intergenic 65.0%
GGTGGCTGGGGTTCGAACCT+CGG + chr1_1:45664008-45664027 None:intergenic 65.0%
GTTCGAACCCCGGACCTTGC+AGG + chr1_1:45664098-45664117 None:intergenic 65.0%
AAGGTCCGGGGTTCGAACCC+CGG - chr1_1:45664100-45664119 Msa0023850:intron 65.0%
AGGTTACCGGCGTGTGGCGG+CGG + chr1_1:45662628-45662647 None:intergenic 70.0%
TGTGGCCGGGGTTCGAACCC+CGG + chr1_1:45664108-45664127 None:intergenic 70.0%
! TGGCGGCGGCTGCGGCGCGT+CGG + chr1_1:45662614-45662633 None:intergenic 85.0%
! CCGGCGTGTGGCGGCGGCTG+CGG + chr1_1:45662622-45662641 None:intergenic 85.0%
! CCGCAGCCGCCGCCACACGC+CGG - chr1_1:45662619-45662638 Msa0023850:intron 85.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 45660975 45667012 45660975 ID=Msa0023850;Name=Msa0023850
chr1_1 mRNA 45660975 45667012 45660975 ID=Msa0023850-mRNA-1;Parent=Msa0023850;Name=Msa0023850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=436|1|1|1|0.42|0.25|8|544|649
chr1_1 exon 45660975 45661391 45660975 ID=Msa0023850-mRNA-1:exon:13041;Parent=Msa0023850-mRNA-1
chr1_1 exon 45661412 45662312 45661412 ID=Msa0023850-mRNA-1:exon:13040;Parent=Msa0023850-mRNA-1
chr1_1 exon 45662433 45662493 45662433 ID=Msa0023850-mRNA-1:exon:13039;Parent=Msa0023850-mRNA-1
chr1_1 exon 45663086 45663459 45663086 ID=Msa0023850-mRNA-1:exon:13038;Parent=Msa0023850-mRNA-1
chr1_1 exon 45664733 45665496 45664733 ID=Msa0023850-mRNA-1:exon:13037;Parent=Msa0023850-mRNA-1
chr1_1 exon 45666184 45666235 45666184 ID=Msa0023850-mRNA-1:exon:13036;Parent=Msa0023850-mRNA-1
chr1_1 exon 45666458 45666514 45666458 ID=Msa0023850-mRNA-1:exon:13035;Parent=Msa0023850-mRNA-1
chr1_1 exon 45666709 45667012 45666709 ID=Msa0023850-mRNA-1:exon:13034;Parent=Msa0023850-mRNA-1
chr1_1 five_prime_UTR 45666709 45667012 45666709 ID=Msa0023850-mRNA-1:five_prime_utr;Parent=Msa0023850-mRNA-1
chr1_1 five_prime_UTR 45666458 45666514 45666458 ID=Msa0023850-mRNA-1:five_prime_utr;Parent=Msa0023850-mRNA-1
chr1_1 five_prime_UTR 45666184 45666235 45666184 ID=Msa0023850-mRNA-1:five_prime_utr;Parent=Msa0023850-mRNA-1
chr1_1 five_prime_UTR 45665474 45665496 45665474 ID=Msa0023850-mRNA-1:five_prime_utr;Parent=Msa0023850-mRNA-1
chr1_1 CDS 45664733 45665473 45664733 ID=Msa0023850-mRNA-1:cds;Parent=Msa0023850-mRNA-1
chr1_1 CDS 45663086 45663459 45663086 ID=Msa0023850-mRNA-1:cds;Parent=Msa0023850-mRNA-1
chr1_1 CDS 45662433 45662493 45662433 ID=Msa0023850-mRNA-1:cds;Parent=Msa0023850-mRNA-1
chr1_1 CDS 45661539 45662312 45661539 ID=Msa0023850-mRNA-1:cds;Parent=Msa0023850-mRNA-1
chr1_1 three_prime_UTR 45661412 45661538 45661412 ID=Msa0023850-mRNA-1:three_prime_utr;Parent=Msa0023850-mRNA-1
chr1_1 three_prime_UTR 45660975 45661391 45660975 ID=Msa0023850-mRNA-1:three_prime_utr;Parent=Msa0023850-mRNA-1
Gene Sequence

>Msa0023850

ATGGCAACGTATTTTCATAATAATTCAGAAATCCAAGGTGGTTCTGACGGCCTTCAAACACTCATTTTCATGAATCCATCAGGTTACATCAATTACTCCGACGCGCCGCAGCCGCCGCCACACGCCGGTAACCTTGTTTTTCTCAACTCAGCTGCCAATCACCCCGGCAACACTTCCCTCCACCACCAACAACACCAGAACTTATCTCACGCGCCACCACAGTTTGTCGGGGTCCCACTCTCGGCAGAACAATCAGTACATGGCCATCATGAGGTTTCTGCTTTGCATGGCTTCCCACCGCGCATGCAGTACAACATGTGGAACCCCGCCGACCCTAATTCAGCGGCGCGTGAAGCTACACGCGCTACTCAGGGACTGTCATTAAGCTTACATGCTCAAGGGTCAGGCGAGGACGCGCGTGTTCCCATTGGTGGGTCGGGTTCGTCTGCTTCAAACGGCTGTGTTTCGGGGATACAGAGTGTGTTATTGAGTTCTAAGTATTTGAAAGCTACACAAGAATTGCTTGATGAAGTTGTTAATGTTAATGGTGGGATTAAGGTTGAAAATGTTAAGAAGAGTTTTGAGAAAAATAAGGTTGTTGGAGAATCTTCAACTGCGGTTAGTGGAGAAGGTGGTTCTGTTGGTGGTGATGGAAATGGAAAACGTAGCACTGAGTTATCAACTACTGAGAGACAAGAAATTCAGATGAAGAAAGCTAAGTTAATTAACATGCTTGATGAGGTGGAACAACGATACAGACAATATCACAACCAAATGCAGATGGTGATCTCCTCATTTGAACAAGTTGCAGGAATTGGTTCAGCAAGAACCTACACTGCCCTAGCACTACAAACAATCTCTAAGCAATTTCGATGTTTAAAAGATGCAATTACCGGCCAAATTAGAGCTGCGAATAAAAGCTTAGGAGAAGATGATAGCTTTGGTGGCAAAATTGAAGGGTCTAGGCTCAAATATGTTGATCATCATTTAAGACAACAAAGAGCTATTCAACAATTGGGAATGATCCATCATAATGCTTGGAGACCTCAAAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTTTTCGAACATTTTCTCCATCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGACTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGTCTTTGGAAACCAATGGTGGAAGAAATGTACATGGAAGAGATGAAGGATCAAGAGATGAATGGTTCTGAGGACAACAAATCAAGCAAAAATACCGATGAAGATCCTTCAATGAAAACACCAACTCCACAAGAAAGAGTTCCAACCTCGGAAACAGAATCCAAAAGTTTCAATTCCAAACAAGACATTCCTATGGTTTCAGTTTCAACACCATCAACTTCACCTGTTGGTGTGAATGTTAGAAACAATTCAGGATTCAGCTTCACGGAACTTGATGGAATAACACAAGCAAGTCCAAAGCGAACAAGGAACCATGAAATTCTTCAATCACCGAATCATGCGAAGTCCAATGAAACAACAACTAATAATGAACAAATTTCAATGAAATTTGGTGATGATAGACAAAGTAGAGATGGTTATTGTTTCATGGGAAACCAAACTAATTTCATTGCTGGTTTTGGTCAATATCCAATGGAGGAAATCGGAAGATTTGACGCGGAACAATTTGCACCAAGGTTTTCAGGTAATAATAATGGTGTTTCACTCACTCTTGGTTTGCCTCATTGTGACACATTATCAGGAACACATCAAAGTTTTATGCCAAACCAAAACATCCAACTAGGAAGAAGATTGGACATTGGCGAAACAAATGAGTTTGGTGACTCTTCAGCTGCATTTGAGAGTATCAACATGCAGAATCCAAAGAGGTTTGCCGCACAATTGTTACCGGATTTTGTGGCATAA
Protein sequence

>Msa0023850

MATYFHNNSEIQGGSDGLQTLIFMNPSGYINYSDAPQPPPHAGNLVFLNSAANHPGNTSLHHQQHQNLSHAPPQFVGVPLSAEQSVHGHHEVSALHGFPPRMQYNMWNPADPNSAAREATRATQGLSLSLHAQGSGEDARVPIGGSGSSASNGCVSGIQSVLLSSKYLKATQELLDEVVNVNGGIKVENVKKSFEKNKVVGESSTAVSGEGGSVGGDGNGKRSTELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDDSFGGKIEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKDQEMNGSEDNKSSKNTDEDPSMKTPTPQERVPTSETESKSFNSKQDIPMVSVSTPSTSPVGVNVRNNSGFSFTELDGITQASPKRTRNHEILQSPNHAKSNETTTNNEQISMKFGDDRQSRDGYCFMGNQTNFIAGFGQYPMEEIGRFDAEQFAPRFSGNNNGVSLTLGLPHCDTLSGTHQSFMPNQNIQLGRRLDIGETNEFGDSSAAFESINMQNPKRFAAQLLPDFVA*