Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023930 | A0A072VWG5 | 29.960 | 247 | 124 | 7 | 123 | 326 | 239 | 479 | 7.21e-13 | 80.5 |
| Msa0023930 | A0A072VWG5 | 50.820 | 366 | 107 | 5 | 24 | 316 | 4 | 369 | 5.28e-99 | 310 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0023930 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023930 | MtrunA17_Chr1g0182611 | 50.820 | 366 | 107 | 5 | 24 | 316 | 4 | 369 | 1.02e-102 | 310 |
| Msa0023930 | MtrunA17_Chr1g0182611 | 29.960 | 247 | 124 | 7 | 123 | 326 | 239 | 479 | 1.39e-16 | 80.5 |
| Msa0023930 | MtrunA17_Chr1g0182621 | 69.264 | 231 | 30 | 3 | 123 | 316 | 246 | 472 | 3.83e-93 | 289 |
| Msa0023930 | MtrunA17_Chr1g0182621 | 48.209 | 363 | 97 | 7 | 1 | 293 | 1 | 342 | 2.28e-86 | 271 |
| Msa0023930 | MtrunA17_Chr1g0182621 | 35.088 | 285 | 119 | 11 | 103 | 338 | 327 | 594 | 7.67e-22 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTGGCTTTCCTGAAAAT+TGG | 0.150538 | 1_1:+45870785 | Msa0023930:CDS |
| ATTGACCTTACTCATCTTAA+TGG | 0.153164 | 1_1:-45871239 | None:intergenic |
| TTACCATCAGATAATATTTC+TGG | 0.175942 | 1_1:-45871548 | None:intergenic |
| CAGACGCAGGCTGCCTCTTC+TGG | 0.220150 | 1_1:-45871421 | None:intergenic |
| TGATTCGGGCAGTGCTGTTT+TGG | 0.267644 | 1_1:+45870855 | Msa0023930:CDS |
| TCTTTATCTGGATGTGTTGC+AGG | 0.273995 | 1_1:-45871887 | None:intergenic |
| GAGAATTATTTAACTTAGTT+GGG | 0.292111 | 1_1:-45872861 | None:intergenic |
| TGAGAATTATTTAACTTAGT+TGG | 0.324210 | 1_1:-45872862 | None:intergenic |
| CCGTGAGATTACAGAAATTC+AGG | 0.340294 | 1_1:+45872677 | Msa0023930:CDS |
| CTAAACAGTGGTTGTTTCCT+TGG | 0.353316 | 1_1:-45869093 | None:intergenic |
| CTTCAAAATCAGTTAGGTAT+TGG | 0.353983 | 1_1:-45872885 | None:intergenic |
| ATTTGGCTTTCCTGAAAATT+GGG | 0.354092 | 1_1:+45870786 | Msa0023930:CDS |
| AGATTCGTTGATACATTATC+AGG | 0.360747 | 1_1:-45871524 | None:intergenic |
| GTAGAGCTCTGCTCTTTCTC+TGG | 0.362481 | 1_1:-45871461 | None:intergenic |
| GCAGAGATCTGGTCTTTATC+TGG | 0.370773 | 1_1:-45871899 | None:intergenic |
| TCAGAAATCGGTACTGATTC+GGG | 0.373490 | 1_1:+45870841 | Msa0023930:CDS |
| ATCAGAAATCGGTACTGATT+CGG | 0.376397 | 1_1:+45870840 | Msa0023930:CDS |
| CAGAAGAGGCAGCCTGCGTC+TGG | 0.389340 | 1_1:+45871422 | Msa0023930:CDS |
| TAAACAGTGGTTGTTTCCTT+GGG | 0.406143 | 1_1:-45869092 | None:intergenic |
| GGACGAGTGAACACAATGTC+TGG | 0.408776 | 1_1:+45871989 | Msa0023930:CDS |
| CGATCTCCTGTGGTCTTATC+CGG | 0.408915 | 1_1:-45871726 | None:intergenic |
| TATGACGAAGAGCCTCTAAA+AGG | 0.413831 | 1_1:-45872720 | None:intergenic |
| ACATATCTTGTTCAACTTCA+AGG | 0.422066 | 1_1:-45871216 | None:intergenic |
| TACTTTGATATCGTCGGAAA+AGG | 0.429947 | 1_1:+45871168 | Msa0023930:CDS |
| ATGATCTTCCACAACCTTCA+AGG | 0.433807 | 1_1:-45871483 | None:intergenic |
| ATTCAGGGAAGAAGCGGTTC+GGG | 0.436156 | 1_1:+45869227 | Msa0023930:intron |
| GATCTCTGCCTTAGCAGCCT+TGG | 0.438669 | 1_1:+45871913 | Msa0023930:CDS |
| GATTCAGGGAAGAAGCGGTT+CGG | 0.441206 | 1_1:+45869226 | Msa0023930:intron |
| GGTTGTGGAAGATCATGATT+TGG | 0.444376 | 1_1:+45871490 | Msa0023930:CDS |
| CAGAGGAAGCAACCTGCTAC+TGG | 0.444849 | 1_1:+45871860 | Msa0023930:intron |
| TTACTTTGTGGAAGAGATGC+TGG | 0.447269 | 1_1:-45869122 | None:intergenic |
| GTTGGGGCAGAGATAATTAC+GGG | 0.448071 | 1_1:-45872844 | None:intergenic |
| TTTAGAGAAGAATCAGAAAT+CGG | 0.452034 | 1_1:+45870829 | Msa0023930:CDS |
| GGCACTTCTTGAAGATGAAC+GGG | 0.453139 | 1_1:+45871755 | Msa0023930:CDS |
| ACCCTTCTTCAAAATCAGTT+AGG | 0.453629 | 1_1:-45872891 | None:intergenic |
| AGTTGGGGCAGAGATAATTA+CGG | 0.456814 | 1_1:-45872845 | None:intergenic |
| TTTAGAGGCTCTTCGTCATA+GGG | 0.467962 | 1_1:+45872723 | Msa0023930:CDS |
| GAGCTCTACCTTGAAGGTTG+TGG | 0.482477 | 1_1:+45871475 | Msa0023930:CDS |
| GAACGGTTACATTATACGAT+TGG | 0.482529 | 1_1:+45869053 | Msa0023930:CDS |
| CGGTTACATTATACGATTGG+TGG | 0.503599 | 1_1:+45869056 | Msa0023930:CDS |
| TTCTTCTTGCTTCCAACGAA+CGG | 0.503942 | 1_1:+45869036 | Msa0023930:CDS |
| TCTTTCTCTGGATTCTTGAG+AGG | 0.504491 | 1_1:-45871449 | None:intergenic |
| AGAGCAGAGCTCTACCTTGA+AGG | 0.508453 | 1_1:+45871469 | Msa0023930:CDS |
| TATGTCCATTAAGATGAGTA+AGG | 0.515645 | 1_1:+45871234 | Msa0023930:CDS |
| ACTCAATTCCAAGGCTGCTA+AGG | 0.517166 | 1_1:-45871921 | None:intergenic |
| TGTTCCTACTTTGATATCGT+CGG | 0.521024 | 1_1:+45871162 | Msa0023930:CDS |
| AGGCTGCTAAGGCAGAGATC+TGG | 0.526441 | 1_1:-45871910 | None:intergenic |
| CGTATAATGTAACCGTTCGT+TGG | 0.528108 | 1_1:-45869048 | None:intergenic |
| AGAAGAAGAAGAAGTTGTGG+GGG | 0.541658 | 1_1:-45868957 | None:intergenic |
| TCTAAAGCAAGCTAGAACAG+AGG | 0.552946 | 1_1:-45870812 | None:intergenic |
| CCTGAATTTCTGTAATCTCA+CGG | 0.553835 | 1_1:-45872677 | None:intergenic |
| GTTGCAGGATCTCCAGTAGC+AGG | 0.559749 | 1_1:-45871872 | None:intergenic |
| TCCTCCATCACTCAATTCCA+AGG | 0.568898 | 1_1:-45871930 | None:intergenic |
| ATATGTCAATTAAGACGTGT+AGG | 0.568939 | 1_1:+45871778 | Msa0023930:CDS |
| TGCCTTGTTGCGATCTCCTG+TGG | 0.576299 | 1_1:-45871736 | None:intergenic |
| TCCGGTGATACAAAAGAAGT+AGG | 0.578423 | 1_1:-45871708 | None:intergenic |
| AGAATTATTTAACTTAGTTG+GGG | 0.579599 | 1_1:-45872860 | None:intergenic |
| AGGCACTTCTTGAAGATGAA+CGG | 0.580313 | 1_1:+45871754 | Msa0023930:CDS |
| AGTGAACACAATGTCTGGGC+AGG | 0.581005 | 1_1:+45871994 | Msa0023930:CDS |
| GACGAGTGAACACAATGTCT+GGG | 0.584003 | 1_1:+45871990 | Msa0023930:CDS |
| GGAATTGAGTGATGGAGGAC+TGG | 0.585638 | 1_1:+45871934 | Msa0023930:CDS |
| CTTCCAGAAATATTATCTGA+TGG | 0.594536 | 1_1:+45871545 | Msa0023930:CDS |
| GTATCACCGGATAAGACCAC+AGG | 0.596862 | 1_1:+45871720 | Msa0023930:CDS |
| TGTGGAAGAGATGCTGGAGA+TGG | 0.601191 | 1_1:-45869116 | None:intergenic |
| TATGTCAATTAAGACGTGTA+GGG | 0.604245 | 1_1:+45871779 | Msa0023930:CDS |
| GCAGCCTTGGAATTGAGTGA+TGG | 0.604319 | 1_1:+45871926 | Msa0023930:CDS |
| GCCTTGGAATTGAGTGATGG+AGG | 0.608447 | 1_1:+45871929 | Msa0023930:CDS |
| CGACTTATTGCAATCTCTCG+TGG | 0.609753 | 1_1:-45871191 | None:intergenic |
| TTGAGAGGATCTCCAGACGC+AGG | 0.618701 | 1_1:-45871434 | None:intergenic |
| GTTGTGATTCAGGGAAGAAG+CGG | 0.620242 | 1_1:+45869221 | Msa0023930:intron |
| TGGCTTGTTAAATCATCCCA+AGG | 0.627246 | 1_1:+45869076 | Msa0023930:CDS |
| AGAGATAATTACACAAAACA+AGG | 0.647978 | 1_1:-45872820 | None:intergenic |
| GGGGTGCAATTAGAAGAAGT+AGG | 0.651690 | 1_1:-45868938 | None:intergenic |
| GAGATTACAGAAATTCAGGA+AGG | 0.670364 | 1_1:+45872681 | Msa0023930:CDS |
| TATTATTAAAAGATATGACG+AGG | 0.693820 | 1_1:+45869266 | Msa0023930:CDS |
| ACTGGAAAGTCTATCGACAC+CGG | 0.699764 | 1_1:+45871952 | Msa0023930:CDS |
| GACCACAGGAGATCGCAACA+AGG | 0.710923 | 1_1:+45871734 | Msa0023930:CDS |
| TGCTGGAGATGGCTAAACAG+TGG | 0.770222 | 1_1:-45869105 | None:intergenic |
| TCTGATTAGAACTTTCACTG+CGG | 0.782209 | 1_1:+45872787 | Msa0023930:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATATAAATTTTCTAAG+TGG | - | chr1_1:45869568-45869587 | None:intergenic | 10.0% |
| !! | TCAAATTAATATATTAATCA+AGG | + | chr1_1:45869704-45869723 | Msa0023930:intron | 10.0% |
| !! | ATTAATATATTAATCAAGGT+AGG | + | chr1_1:45869708-45869727 | Msa0023930:intron | 15.0% |
| !!! | ATTTTTCTATTGACATTTTA+AGG | + | chr1_1:45870146-45870165 | Msa0023930:intron | 15.0% |
| !!! | GTATATATATGTTTTGATTA+GGG | + | chr1_1:45870564-45870583 | Msa0023930:intron | 15.0% |
| !!! | TATATATATGTTTTGATTAG+GGG | + | chr1_1:45870565-45870584 | Msa0023930:intron | 15.0% |
| !!! | ATTTTCAAGAGTTTTATATT+TGG | + | chr1_1:45870769-45870788 | Msa0023930:CDS | 15.0% |
| !!! | AAATATTTTGATTTTGATGA+TGG | + | chr1_1:45870954-45870973 | Msa0023930:intron | 15.0% |
| !!! | TGTTTAATTATTTTTCTCTT+AGG | - | chr1_1:45872096-45872115 | None:intergenic | 15.0% |
| !!! | TGTAATAACTTTGATTTTGA+GGG | - | chr1_1:45869193-45869212 | None:intergenic | 20.0% |
| !!! | ATATCTTTTAATAATAGGAG+CGG | - | chr1_1:45869262-45869281 | None:intergenic | 20.0% |
| !!! | TCGTCATATCTTTTAATAAT+AGG | - | chr1_1:45869267-45869286 | None:intergenic | 20.0% |
| !! | TATTATTAAAAGATATGACG+AGG | + | chr1_1:45869266-45869285 | Msa0023930:CDS | 20.0% |
| !! | AATTAATGACTAATCAAGAT+GGG | - | chr1_1:45869985-45870004 | None:intergenic | 20.0% |
| !! | TAATTAATGACTAATCAAGA+TGG | - | chr1_1:45869986-45870005 | None:intergenic | 20.0% |
| !! | ATATATGTGATAGTCTTTAT+TGG | - | chr1_1:45870277-45870296 | None:intergenic | 20.0% |
| !! | AAATTGGTTACATAATTGAT+TGG | + | chr1_1:45870497-45870516 | Msa0023930:intron | 20.0% |
| !!! | GGTATATATATGTTTTGATT+AGG | + | chr1_1:45870563-45870582 | Msa0023930:intron | 20.0% |
| !! | AAAAAACAAAAATCCATCAA+GGG | - | chr1_1:45870731-45870750 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTCTTCTATTTCA+TGG | + | chr1_1:45870742-45870761 | Msa0023930:intron | 20.0% |
| !!! | TATCAAGAAATTTTCTCTAA+CGG | + | chr1_1:45870895-45870914 | Msa0023930:CDS | 20.0% |
| !! | ATCAAAATCAAAATATTTGC+TGG | - | chr1_1:45870952-45870971 | None:intergenic | 20.0% |
| !! | ATTGAAAAATTTACCAGATT+TGG | - | chr1_1:45872226-45872245 | None:intergenic | 20.0% |
| !! | TCAAACACCTATTTATAATA+TGG | + | chr1_1:45872472-45872491 | Msa0023930:intron | 20.0% |
| !! | TCACATACCATATTATAAAT+AGG | - | chr1_1:45872482-45872501 | None:intergenic | 20.0% |
| !!! | ATTTATTTTCTCTTTGAGAT+GGG | + | chr1_1:45872580-45872599 | Msa0023930:intron | 20.0% |
| !!! | AGAATTATTTAACTTAGTTG+GGG | - | chr1_1:45872863-45872882 | None:intergenic | 20.0% |
| !!! | GAGAATTATTTAACTTAGTT+GGG | - | chr1_1:45872864-45872883 | None:intergenic | 20.0% |
| !!! | TGAGAATTATTTAACTTAGT+TGG | - | chr1_1:45872865-45872884 | None:intergenic | 20.0% |
| ! | GAAATGAAATACTTACTTTG+TGG | - | chr1_1:45869137-45869156 | None:intergenic | 25.0% |
| ! | TGAATTAAGCATAAACTGAA+GGG | - | chr1_1:45869165-45869184 | None:intergenic | 25.0% |
| ! | TTGAATTAAGCATAAACTGA+AGG | - | chr1_1:45869166-45869185 | None:intergenic | 25.0% |
| !!! | GTGTAATAACTTTGATTTTG+AGG | - | chr1_1:45869194-45869213 | None:intergenic | 25.0% |
| ! | ACATTTAATGTTGTGATTCA+GGG | + | chr1_1:45869212-45869231 | Msa0023930:intron | 25.0% |
| ! | ATATTATATTATTCTCGGTG+TGG | - | chr1_1:45869452-45869471 | None:intergenic | 25.0% |
| !! | AGTTTAGTATTGAACTTACA+GGG | - | chr1_1:45869671-45869690 | None:intergenic | 25.0% |
| ! | AAATAATACTTCATACTACC+TGG | - | chr1_1:45869757-45869776 | None:intergenic | 25.0% |
| !!! | CAAGTCTATAGTTTTAATCA+AGG | + | chr1_1:45870412-45870431 | Msa0023930:intron | 25.0% |
| ! | TTACATAATTGATTGGATCT+TGG | + | chr1_1:45870504-45870523 | Msa0023930:intron | 25.0% |
| ! | TACATAATTGATTGGATCTT+GGG | + | chr1_1:45870505-45870524 | Msa0023930:intron | 25.0% |
| !! | TTCATAACTGTCAATGTTTT+TGG | + | chr1_1:45870635-45870654 | Msa0023930:intron | 25.0% |
| ! | AAAAACAAAAATCCATCAAG+GGG | - | chr1_1:45870730-45870749 | None:intergenic | 25.0% |
| ! | GAAAAAACAAAAATCCATCA+AGG | - | chr1_1:45870732-45870751 | None:intergenic | 25.0% |
| ! | TTTAGAGAAGAATCAGAAAT+CGG | + | chr1_1:45870829-45870848 | Msa0023930:CDS | 25.0% |
| !!! | AACGGTAAATATTTTGATGA+TGG | + | chr1_1:45870913-45870932 | Msa0023930:intron | 25.0% |
| ! | TTACCATCAAATGATATTTC+TGG | - | chr1_1:45871009-45871028 | None:intergenic | 25.0% |
| ! | NNNNNNNAGCATTATGCAAC+CGG | - | chr1_1:45871300-45871319 | None:intergenic | 25.0% |
| ! | TTACCATCAGATAATATTTC+TGG | - | chr1_1:45871551-45871570 | None:intergenic | 25.0% |
| !!! | TGAAAAAGTTTTGGAATTTC+TGG | - | chr1_1:45872038-45872057 | None:intergenic | 25.0% |
| !! | AGTTTTTGCTGAAAAAGTTT+TGG | - | chr1_1:45872047-45872066 | None:intergenic | 25.0% |
| ! | AGTCTAAAAAAATCCAAATC+TGG | + | chr1_1:45872210-45872229 | Msa0023930:intron | 25.0% |
| ! | ATGAAGTAACTCATCTTATT+TGG | + | chr1_1:45872258-45872277 | Msa0023930:intron | 25.0% |
| ! | AAAATGCTAACAATATCACT+GGG | - | chr1_1:45872351-45872370 | None:intergenic | 25.0% |
| ! | AAAAATGCTAACAATATCAC+TGG | - | chr1_1:45872352-45872371 | None:intergenic | 25.0% |
| ! | AAAGAATAGAGTGAAGTAAA+TGG | - | chr1_1:45872395-45872414 | None:intergenic | 25.0% |
| ! | TTCACTCTATTCTTTATGTT+TGG | + | chr1_1:45872400-45872419 | Msa0023930:intron | 25.0% |
| ! | TCACTCTATTCTTTATGTTT+GGG | + | chr1_1:45872401-45872420 | Msa0023930:intron | 25.0% |
| !!! | TTATGTTTGGGTTATTTTCT+AGG | + | chr1_1:45872413-45872432 | Msa0023930:intron | 25.0% |
| ! | AATAAATCCTAGACATAATG+CGG | - | chr1_1:45872567-45872586 | None:intergenic | 25.0% |
| !!! | GATTTATTTTCTCTTTGAGA+TGG | + | chr1_1:45872579-45872598 | Msa0023930:intron | 25.0% |
| ! | AGAGATAATTACACAAAACA+AGG | - | chr1_1:45872823-45872842 | None:intergenic | 25.0% |
| CACATTTAATGTTGTGATTC+AGG | + | chr1_1:45869211-45869230 | Msa0023930:intron | 30.0% | |
| TGCTTCAAGAATTGATACAA+AGG | - | chr1_1:45869391-45869410 | None:intergenic | 30.0% | |
| ! | CAGTTTAGTATTGAACTTAC+AGG | - | chr1_1:45869672-45869691 | None:intergenic | 30.0% |
| CTGTAAGTTCAATACTAAAC+TGG | + | chr1_1:45869670-45869689 | Msa0023930:intron | 30.0% | |
| TTTCTTTCATTCAATTTCCC+TGG | + | chr1_1:45869904-45869923 | Msa0023930:intron | 30.0% | |
| AAAAATTAAAACCCTGACCA+GGG | - | chr1_1:45869924-45869943 | None:intergenic | 30.0% | |
| TAAAAATTAAAACCCTGACC+AGG | - | chr1_1:45869925-45869944 | None:intergenic | 30.0% | |
| TCTGAACAACTAATACCTTA+GGG | - | chr1_1:45870049-45870068 | None:intergenic | 30.0% | |
| TTCTGAACAACTAATACCTT+AGG | - | chr1_1:45870050-45870069 | None:intergenic | 30.0% | |
| TTAATTACCATGACAATCTC+AGG | + | chr1_1:45870092-45870111 | Msa0023930:intron | 30.0% | |
| TGAGTAGGACATCAATAATT+CGG | - | chr1_1:45870310-45870329 | None:intergenic | 30.0% | |
| ATCGTATGATTATTGTGAGT+AGG | - | chr1_1:45870325-45870344 | None:intergenic | 30.0% | |
| !!! | ATAACTGTCAATGTTTTTGG+TGG | + | chr1_1:45870638-45870657 | Msa0023930:intron | 30.0% |
| !! | TATTTGGCTTTCCTGAAAAT+TGG | + | chr1_1:45870785-45870804 | Msa0023930:CDS | 30.0% |
| !! | ATTTGGCTTTCCTGAAAATT+GGG | + | chr1_1:45870786-45870805 | Msa0023930:CDS | 30.0% |
| CTTCCAGAAATATCATTTGA+TGG | + | chr1_1:45871003-45871022 | Msa0023930:intron | 30.0% | |
| GATATAGAGATTGTAGGTAT+AGG | - | chr1_1:45871105-45871124 | None:intergenic | 30.0% | |
| TACCTACAATCTCTATATCT+TGG | + | chr1_1:45871106-45871125 | Msa0023930:intron | 30.0% | |
| TACCAAGATATAGAGATTGT+AGG | - | chr1_1:45871111-45871130 | None:intergenic | 30.0% | |
| ACATATCTTGTTCAACTTCA+AGG | - | chr1_1:45871219-45871238 | None:intergenic | 30.0% | |
| TATGTCCATTAAGATGAGTA+AGG | + | chr1_1:45871234-45871253 | Msa0023930:CDS | 30.0% | |
| ATTGACCTTACTCATCTTAA+TGG | - | chr1_1:45871242-45871261 | None:intergenic | 30.0% | |
| AGATTCGTTGATACATTATC+AGG | - | chr1_1:45871527-45871546 | None:intergenic | 30.0% | |
| CTTCCAGAAATATTATCTGA+TGG | + | chr1_1:45871545-45871564 | Msa0023930:CDS | 30.0% | |
| TATTAAGCAATAGAGACTGT+AGG | - | chr1_1:45871653-45871672 | None:intergenic | 30.0% | |
| ATATGTCAATTAAGACGTGT+AGG | + | chr1_1:45871778-45871797 | Msa0023930:CDS | 30.0% | |
| TATGTCAATTAAGACGTGTA+GGG | + | chr1_1:45871779-45871798 | Msa0023930:CDS | 30.0% | |
| CTGAAGAATGTTATAAGAAG+CGG | + | chr1_1:45872065-45872084 | Msa0023930:intron | 30.0% | |
| GATTTAAGTCATTCGAACAA+GGG | + | chr1_1:45872147-45872166 | Msa0023930:intron | 30.0% | |
| ! | CTTTTTACATTCTACCATTC+AGG | + | chr1_1:45872653-45872672 | Msa0023930:intron | 30.0% |
| ! | TCTTTGATATCACCTTTTAG+AGG | + | chr1_1:45872708-45872727 | Msa0023930:CDS | 30.0% |
| AAGAAGAAGAAGAAGTTGTG+GGG | - | chr1_1:45868961-45868980 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGTTGT+GGG | - | chr1_1:45868962-45868981 | None:intergenic | 35.0% | |
| AGAAGAAGAAGAAGAAGTTG+TGG | - | chr1_1:45868963-45868982 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | - | chr1_1:45868986-45869005 | None:intergenic | 35.0% | |
| GAACGGTTACATTATACGAT+TGG | + | chr1_1:45869053-45869072 | Msa0023930:CDS | 35.0% | |
| ! | TAAACAGTGGTTGTTTCCTT+GGG | - | chr1_1:45869095-45869114 | None:intergenic | 35.0% |
| AGTGTTCAAAACACATGCAA+CGG | + | chr1_1:45869302-45869321 | Msa0023930:intron | 35.0% | |
| ACATGCAACGGAATAAAGTT+TGG | + | chr1_1:45869314-45869333 | Msa0023930:intron | 35.0% | |
| GTTAACAAGAGTTGTAACGA+CGG | - | chr1_1:45869820-45869839 | None:intergenic | 35.0% | |
| AACTCATTACCAAGAGTTGA+CGG | + | chr1_1:45869957-45869976 | Msa0023930:intron | 35.0% | |
| ACTCGACTGAGAATTTCTAA+TGG | - | chr1_1:45870181-45870200 | None:intergenic | 35.0% | |
| CAGTTATGAATACAAACCTG+AGG | - | chr1_1:45870625-45870644 | None:intergenic | 35.0% | |
| !! | ATCAGAAATCGGTACTGATT+CGG | + | chr1_1:45870840-45870859 | Msa0023930:CDS | 35.0% |
| !!! | GATTTTGATGATGGTTGTTC+TGG | + | chr1_1:45870963-45870982 | Msa0023930:intron | 35.0% |
| !! | GATATTTCTGGAAGATTTGC+TGG | - | chr1_1:45870997-45871016 | None:intergenic | 35.0% |
| TTTAATTGTTGTCGCAGCTT+TGG | + | chr1_1:45871132-45871151 | Msa0023930:intron | 35.0% | |
| TGTTCCTACTTTGATATCGT+CGG | + | chr1_1:45871162-45871181 | Msa0023930:CDS | 35.0% | |
| ! | TTTTCCGACGATATCAAAGT+AGG | - | chr1_1:45871169-45871188 | None:intergenic | 35.0% |
| TACTTTGATATCGTCGGAAA+AGG | + | chr1_1:45871168-45871187 | Msa0023930:CDS | 35.0% | |
| AGTAAGGTCAATGATGTTCA+TGG | + | chr1_1:45871250-45871269 | Msa0023930:intron | 35.0% | |
| ! | TCCTACTTCTTTTGTATCAC+CGG | + | chr1_1:45871707-45871726 | Msa0023930:CDS | 35.0% |
| AGGGTATAACATTATGCATC+CGG | - | chr1_1:45871838-45871857 | None:intergenic | 35.0% | |
| ATAATGTTATACCCTACCAG+AGG | + | chr1_1:45871843-45871862 | Msa0023930:intron | 35.0% | |
| ATGTAAAATCTCCTCAAAGC+AGG | + | chr1_1:45872124-45872143 | Msa0023930:intron | 35.0% | |
| TGTAAAATCTCCTCAAAGCA+GGG | + | chr1_1:45872125-45872144 | Msa0023930:intron | 35.0% | |
| GGATTTAAGTCATTCGAACA+AGG | + | chr1_1:45872146-45872165 | Msa0023930:intron | 35.0% | |
| !! | GTTTGGGTTATTTTCTAGGA+AGG | + | chr1_1:45872417-45872436 | Msa0023930:intron | 35.0% |
| !!! | TTTTCTCTTTGAGATGGGTA+AGG | + | chr1_1:45872585-45872604 | Msa0023930:intron | 35.0% |
| CCTGAATTTCTGTAATCTCA+CGG | - | chr1_1:45872680-45872699 | None:intergenic | 35.0% | |
| GAGATTACAGAAATTCAGGA+AGG | + | chr1_1:45872681-45872700 | Msa0023930:CDS | 35.0% | |
| TCTGATTAGAACTTTCACTG+CGG | + | chr1_1:45872787-45872806 | Msa0023930:three_prime_UTR | 35.0% | |
| AGAAGAAGAAGAAGTTGTGG+GGG | - | chr1_1:45868960-45868979 | None:intergenic | 40.0% | |
| TTCTTCTTGCTTCCAACGAA+CGG | + | chr1_1:45869036-45869055 | Msa0023930:CDS | 40.0% | |
| CGTATAATGTAACCGTTCGT+TGG | - | chr1_1:45869051-45869070 | None:intergenic | 40.0% | |
| CGGTTACATTATACGATTGG+TGG | + | chr1_1:45869056-45869075 | Msa0023930:CDS | 40.0% | |
| !! | TGGCTTGTTAAATCATCCCA+AGG | + | chr1_1:45869076-45869095 | Msa0023930:CDS | 40.0% |
| ! | CTAAACAGTGGTTGTTTCCT+TGG | - | chr1_1:45869096-45869115 | None:intergenic | 40.0% |
| TTACTTTGTGGAAGAGATGC+TGG | - | chr1_1:45869125-45869144 | None:intergenic | 40.0% | |
| TTCATACTACCTGGACGTTA+AGG | - | chr1_1:45869748-45869767 | None:intergenic | 40.0% | |
| !! | CTCTTGTTAACTCTAGAGCA+TGG | + | chr1_1:45869829-45869848 | Msa0023930:intron | 40.0% |
| TTCATTCAATTTCCCTGGTC+AGG | + | chr1_1:45869909-45869928 | Msa0023930:intron | 40.0% | |
| TCATTCAATTTCCCTGGTCA+GGG | + | chr1_1:45869910-45869929 | Msa0023930:intron | 40.0% | |
| TCTTTGACCTGAGATTGTCA+TGG | - | chr1_1:45870102-45870121 | None:intergenic | 40.0% | |
| TATACCATCGACAGTCTCAA+GGG | - | chr1_1:45870549-45870568 | None:intergenic | 40.0% | |
| ATATACCATCGACAGTCTCA+AGG | - | chr1_1:45870550-45870569 | None:intergenic | 40.0% | |
| ! | ACAGAGGTTTCCCAATTTTC+AGG | - | chr1_1:45870799-45870818 | None:intergenic | 40.0% |
| ! | TCTAAAGCAAGCTAGAACAG+AGG | - | chr1_1:45870815-45870834 | None:intergenic | 40.0% |
| !! | TCAGAAATCGGTACTGATTC+GGG | + | chr1_1:45870841-45870860 | Msa0023930:CDS | 40.0% |
| GTCAATGATGTTCATGGTAG+TGG | + | chr1_1:45871256-45871275 | Msa0023930:intron | 40.0% | |
| TCTTTCTCTGGATTCTTGAG+AGG | - | chr1_1:45871452-45871471 | None:intergenic | 40.0% | |
| ATGATCTTCCACAACCTTCA+AGG | - | chr1_1:45871486-45871505 | None:intergenic | 40.0% | |
| GGTTGTGGAAGATCATGATT+TGG | + | chr1_1:45871490-45871509 | Msa0023930:CDS | 40.0% | |
| TTCAAATGTTGTCACAGCTG+TGG | + | chr1_1:45871674-45871693 | Msa0023930:intron | 40.0% | |
| TCCGGTGATACAAAAGAAGT+AGG | - | chr1_1:45871711-45871730 | None:intergenic | 40.0% | |
| AGGCACTTCTTGAAGATGAA+CGG | + | chr1_1:45871754-45871773 | Msa0023930:CDS | 40.0% | |
| TGTAGGGTCAATGTTGTTCA+TGG | + | chr1_1:45871795-45871814 | Msa0023930:intron | 40.0% | |
| GGGTATAACATTATGCATCC+GGG | - | chr1_1:45871837-45871856 | None:intergenic | 40.0% | |
| TCTTTATCTGGATGTGTTGC+AGG | - | chr1_1:45871890-45871909 | None:intergenic | 40.0% | |
| !! | ACACCGGTTCAGTCAAAAAA+GGG | + | chr1_1:45871968-45871987 | Msa0023930:CDS | 40.0% |
| TGACTTAAATCCCTGCTTTG+AGG | - | chr1_1:45872138-45872157 | None:intergenic | 40.0% | |
| ! | CAATGACTCTAGAGAAACTG+TGG | - | chr1_1:45872190-45872209 | None:intergenic | 40.0% |
| !! | TGGGTTATTTTCTAGGAAGG+TGG | + | chr1_1:45872420-45872439 | Msa0023930:intron | 40.0% |
| ! | TTCTACCTCGCTTAGAGTTT+TGG | + | chr1_1:45872444-45872463 | Msa0023930:intron | 40.0% |
| GATGTCGAATAATGGCAACT+GGG | - | chr1_1:45872537-45872556 | None:intergenic | 40.0% | |
| AGATGGGTAAGGCAAACAAT+GGG | + | chr1_1:45872596-45872615 | Msa0023930:intron | 40.0% | |
| CCGTGAGATTACAGAAATTC+AGG | + | chr1_1:45872677-45872696 | Msa0023930:CDS | 40.0% | |
| TATGACGAAGAGCCTCTAAA+AGG | - | chr1_1:45872723-45872742 | None:intergenic | 40.0% | |
| !! | TTTTAGAGGCTCTTCGTCAT+AGG | + | chr1_1:45872722-45872741 | Msa0023930:CDS | 40.0% |
| TTTAGAGGCTCTTCGTCATA+GGG | + | chr1_1:45872723-45872742 | Msa0023930:CDS | 40.0% | |
| AGTTGGGGCAGAGATAATTA+CGG | - | chr1_1:45872848-45872867 | None:intergenic | 40.0% | |
| GGGGTGCAATTAGAAGAAGT+AGG | - | chr1_1:45868941-45868960 | None:intergenic | 45.0% | |
| GTTGTGATTCAGGGAAGAAG+CGG | + | chr1_1:45869221-45869240 | Msa0023930:intron | 45.0% | |
| AGTAACACTCCTTAACGTCC+AGG | + | chr1_1:45869736-45869755 | Msa0023930:intron | 45.0% | |
| GGTGCTAGTTGAAAGGATGT+TGG | - | chr1_1:45870028-45870047 | None:intergenic | 45.0% | |
| TCCTTTCAACTAGCACCCTA+AGG | + | chr1_1:45870031-45870050 | Msa0023930:intron | 45.0% | |
| ! | ACCTTAGGGTGCTAGTTGAA+AGG | - | chr1_1:45870035-45870054 | None:intergenic | 45.0% |
| CACGCTAATGTTTACTCCTC+AGG | + | chr1_1:45870606-45870625 | Msa0023930:intron | 45.0% | |
| GTTTCATTGCTACCCCTTGA+TGG | + | chr1_1:45870715-45870734 | Msa0023930:intron | 45.0% | |
| CGACTTATTGCAATCTCTCG+TGG | - | chr1_1:45871194-45871213 | None:intergenic | 45.0% | |
| !! | ATGATGTTCATGGTAGTGGC+CGG | + | chr1_1:45871260-45871279 | Msa0023930:intron | 45.0% |
| GGCACTTCTTGAAGATGAAC+GGG | + | chr1_1:45871755-45871774 | Msa0023930:CDS | 45.0% | |
| ! | GCAGAGATCTGGTCTTTATC+TGG | - | chr1_1:45871902-45871921 | None:intergenic | 45.0% |
| ACTCAATTCCAAGGCTGCTA+AGG | - | chr1_1:45871924-45871943 | None:intergenic | 45.0% | |
| TCCTCCATCACTCAATTCCA+AGG | - | chr1_1:45871933-45871952 | None:intergenic | 45.0% | |
| ACTGGAAAGTCTATCGACAC+CGG | + | chr1_1:45871952-45871971 | Msa0023930:CDS | 45.0% | |
| !! | GACACCGGTTCAGTCAAAAA+AGG | + | chr1_1:45871967-45871986 | Msa0023930:CDS | 45.0% |
| !!! | CGTCCCTTTTTTGACTGAAC+CGG | - | chr1_1:45871974-45871993 | None:intergenic | 45.0% |
| GACGAGTGAACACAATGTCT+GGG | + | chr1_1:45871990-45872009 | Msa0023930:CDS | 45.0% | |
| ! | TATCACTGGGTGAGAAGTGT+TGG | - | chr1_1:45872338-45872357 | None:intergenic | 45.0% |
| GGATGTCGAATAATGGCAAC+TGG | - | chr1_1:45872538-45872557 | None:intergenic | 45.0% | |
| GTGTGCAGGATGTCGAATAA+TGG | - | chr1_1:45872545-45872564 | None:intergenic | 45.0% | |
| GAGATGGGTAAGGCAAACAA+TGG | + | chr1_1:45872595-45872614 | Msa0023930:intron | 45.0% | |
| TGTAATCTCACGGTCCTGAA+TGG | - | chr1_1:45872670-45872689 | None:intergenic | 45.0% | |
| GTTGGGGCAGAGATAATTAC+GGG | - | chr1_1:45872847-45872866 | None:intergenic | 45.0% | |
| !! | ATTAAATATTATATTATTCT+CGG | - | chr1_1:45869457-45869476 | None:intergenic | 5.0% |
| !! | AAATATTATATTATTCTAAT+TGG | - | chr1_1:45869792-45869811 | None:intergenic | 5.0% |
| !! | ATATTTATTAAGTATAAAAT+TGG | + | chr1_1:45870481-45870500 | Msa0023930:intron | 5.0% |
| TGCTGGAGATGGCTAAACAG+TGG | - | chr1_1:45869108-45869127 | None:intergenic | 50.0% | |
| TGTGGAAGAGATGCTGGAGA+TGG | - | chr1_1:45869119-45869138 | None:intergenic | 50.0% | |
| GATTCAGGGAAGAAGCGGTT+CGG | + | chr1_1:45869226-45869245 | Msa0023930:intron | 50.0% | |
| ATTCAGGGAAGAAGCGGTTC+GGG | + | chr1_1:45869227-45869246 | Msa0023930:intron | 50.0% | |
| AGATGGGATCCGTCAACTCT+TGG | - | chr1_1:45869969-45869988 | None:intergenic | 50.0% | |
| GTTTCCCTTGAGACTGTCGA+TGG | + | chr1_1:45870542-45870561 | Msa0023930:intron | 50.0% | |
| !!! | TGATTCGGGCAGTGCTGTTT+TGG | + | chr1_1:45870855-45870874 | Msa0023930:CDS | 50.0% |
| GTAGAGCTCTGCTCTTTCTC+TGG | - | chr1_1:45871464-45871483 | None:intergenic | 50.0% | |
| AGAGCAGAGCTCTACCTTGA+AGG | + | chr1_1:45871469-45871488 | Msa0023930:CDS | 50.0% | |
| GAGCTCTACCTTGAAGGTTG+TGG | + | chr1_1:45871475-45871494 | Msa0023930:CDS | 50.0% | |
| GTATCACCGGATAAGACCAC+AGG | + | chr1_1:45871720-45871739 | Msa0023930:CDS | 50.0% | |
| !! | CGATCTCCTGTGGTCTTATC+CGG | - | chr1_1:45871729-45871748 | None:intergenic | 50.0% |
| GGTAGTATAGACGTAGTGCC+CGG | + | chr1_1:45871816-45871835 | Msa0023930:intron | 50.0% | |
| GCAGCCTTGGAATTGAGTGA+TGG | + | chr1_1:45871926-45871945 | Msa0023930:CDS | 50.0% | |
| GCCTTGGAATTGAGTGATGG+AGG | + | chr1_1:45871929-45871948 | Msa0023930:CDS | 50.0% | |
| ! | GGAATTGAGTGATGGAGGAC+TGG | + | chr1_1:45871934-45871953 | Msa0023930:CDS | 50.0% |
| GGACGAGTGAACACAATGTC+TGG | + | chr1_1:45871989-45872008 | Msa0023930:CDS | 50.0% | |
| AGTGAACACAATGTCTGGGC+AGG | + | chr1_1:45871994-45872013 | Msa0023930:CDS | 50.0% | |
| TTGCGCCAAAACTCTAAGCG+AGG | - | chr1_1:45872452-45872471 | None:intergenic | 50.0% | |
| CTAGACATAATGCGGTGTGC+AGG | - | chr1_1:45872559-45872578 | None:intergenic | 50.0% | |
| CTGCACACCGCATTATGTCT+AGG | + | chr1_1:45872557-45872576 | Msa0023930:intron | 50.0% | |
| ATCTTGGGCATCTCCAGCAG+AGG | + | chr1_1:45870520-45870539 | Msa0023930:intron | 55.0% | |
| GTCTCAAGGGAAACCTCTGC+TGG | - | chr1_1:45870536-45870555 | None:intergenic | 55.0% | |
| TTGAGAGGATCTCCAGACGC+AGG | - | chr1_1:45871437-45871456 | None:intergenic | 55.0% | |
| GACCACAGGAGATCGCAACA+AGG | + | chr1_1:45871734-45871753 | Msa0023930:CDS | 55.0% | |
| ! | TGCCTTGTTGCGATCTCCTG+TGG | - | chr1_1:45871739-45871758 | None:intergenic | 55.0% |
| GCAGGTTGCTTCCTCTGGTA+GGG | - | chr1_1:45871857-45871876 | None:intergenic | 55.0% | |
| AGCAGGTTGCTTCCTCTGGT+AGG | - | chr1_1:45871858-45871877 | None:intergenic | 55.0% | |
| CAGTAGCAGGTTGCTTCCTC+TGG | - | chr1_1:45871862-45871881 | None:intergenic | 55.0% | |
| CAGAGGAAGCAACCTGCTAC+TGG | + | chr1_1:45871860-45871879 | Msa0023930:intron | 55.0% | |
| GTTGCAGGATCTCCAGTAGC+AGG | - | chr1_1:45871875-45871894 | None:intergenic | 55.0% | |
| AGGCTGCTAAGGCAGAGATC+TGG | - | chr1_1:45871913-45871932 | None:intergenic | 55.0% | |
| GATCTCTGCCTTAGCAGCCT+TGG | + | chr1_1:45871913-45871932 | Msa0023930:CDS | 55.0% | |
| ! | AGTGGCCGGACTAGACGTAG+TGG | + | chr1_1:45871274-45871293 | Msa0023930:intron | 60.0% |
| ACCGGCCACTACGTCTAGTC+CGG | - | chr1_1:45871282-45871301 | None:intergenic | 60.0% | |
| ! | GCCGGACTAGACGTAGTGGC+CGG | + | chr1_1:45871278-45871297 | Msa0023930:intron | 65.0% |
| CAGACGCAGGCTGCCTCTTC+TGG | - | chr1_1:45871424-45871443 | None:intergenic | 65.0% | |
| CAGAAGAGGCAGCCTGCGTC+TGG | + | chr1_1:45871422-45871441 | Msa0023930:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 45868923 | 45872903 | 45868923 | ID=Msa0023930;Name=Msa0023930 |
| chr1_1 | mRNA | 45868923 | 45872903 | 45868923 | ID=Msa0023930-mRNA-1;Parent=Msa0023930;Name=Msa0023930-mRNA-1;_AED=0.18;_eAED=0.22;_QI=0|0|0.12|1|1|1|8|160|338 |
| chr1_1 | exon | 45868923 | 45869140 | 45868923 | ID=Msa0023930-mRNA-1:exon:13064;Parent=Msa0023930-mRNA-1 |
| chr1_1 | exon | 45869233 | 45869293 | 45869233 | ID=Msa0023930-mRNA-1:exon:13065;Parent=Msa0023930-mRNA-1 |
| chr1_1 | exon | 45870769 | 45870916 | 45870769 | ID=Msa0023930-mRNA-1:exon:13066;Parent=Msa0023930-mRNA-1 |
| chr1_1 | exon | 45871149 | 45871255 | 45871149 | ID=Msa0023930-mRNA-1:exon:13067;Parent=Msa0023930-mRNA-1 |
| chr1_1 | exon | 45871416 | 45871566 | 45871416 | ID=Msa0023930-mRNA-1:exon:13068;Parent=Msa0023930-mRNA-1 |
| chr1_1 | exon | 45871691 | 45871800 | 45871691 | ID=Msa0023930-mRNA-1:exon:13069;Parent=Msa0023930-mRNA-1 |
| chr1_1 | exon | 45871863 | 45872015 | 45871863 | ID=Msa0023930-mRNA-1:exon:13070;Parent=Msa0023930-mRNA-1 |
| chr1_1 | exon | 45872675 | 45872903 | 45872675 | ID=Msa0023930-mRNA-1:exon:13071;Parent=Msa0023930-mRNA-1 |
| chr1_1 | CDS | 45868923 | 45869140 | 45868923 | ID=Msa0023930-mRNA-1:cds;Parent=Msa0023930-mRNA-1 |
| chr1_1 | CDS | 45869233 | 45869293 | 45869233 | ID=Msa0023930-mRNA-1:cds;Parent=Msa0023930-mRNA-1 |
| chr1_1 | CDS | 45870769 | 45870916 | 45870769 | ID=Msa0023930-mRNA-1:cds;Parent=Msa0023930-mRNA-1 |
| chr1_1 | CDS | 45871149 | 45871255 | 45871149 | ID=Msa0023930-mRNA-1:cds;Parent=Msa0023930-mRNA-1 |
| chr1_1 | CDS | 45871416 | 45871566 | 45871416 | ID=Msa0023930-mRNA-1:cds;Parent=Msa0023930-mRNA-1 |
| chr1_1 | CDS | 45871691 | 45871800 | 45871691 | ID=Msa0023930-mRNA-1:cds;Parent=Msa0023930-mRNA-1 |
| chr1_1 | CDS | 45871863 | 45872015 | 45871863 | ID=Msa0023930-mRNA-1:cds;Parent=Msa0023930-mRNA-1 |
| chr1_1 | CDS | 45872675 | 45872743 | 45872675 | ID=Msa0023930-mRNA-1:cds;Parent=Msa0023930-mRNA-1 |
| chr1_1 | three_prime_UTR | 45872744 | 45872903 | 45872744 | ID=Msa0023930-mRNA-1:three_prime_utr;Parent=Msa0023930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
