AlfalfaGEDB | Msa0024760

M. sativa cultivar zhongmu-4 / Msa0024760

KEGG: -
GO: GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0024760	sp\|Q9SA82\|BH052_ARATH	41.520	171	97	2	135	305	95	262	3.25e-28	112

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0024760	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0024760	MtrunA17_Chr1g0179061	93.802	242	12	2	1	241	1	240	1.89e-166	462
Msa0024760	MtrunA17_Chr2g0311101	81.056	322	27	10	1	312	13	310	1.58e-161	452
Msa0024760	MtrunA17_Chr8g0384141	58.491	53	22	0	182	234	125	177	2.02e-13	69.3
Msa0024760	MtrunA17_Chr3g0134001	58.491	53	22	0	182	234	182	234	1.42e-12	66.6

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0024760	AT1G30670.1	41.520	171	97	2	135	305	95	262	3.30e-29	112
Msa0024760	AT2G34820.1	42.254	213	115	4	97	305	81	289	2.65e-28	111
Msa0024760	AT3G21330.1	60.377	53	21	0	182	234	280	332	1.93e-13	70.5
Msa0024760	AT5G01305.1	50.000	58	29	0	182	239	48	105	1.32e-12	65.5
Msa0024760	AT4G00120.1	52.830	53	25	0	182	234	123	175	6.33e-12	63.9

Showing 1 to 5 of 5 entries

Previous1Next

Find 53 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAAACTATTCTTGCTT+TGG	0.325467	1_1:+47432926	None:intergenic
AAGCAAAAGGGTTAGGGTTA+GGG	0.345934	1_1:+47434353	None:intergenic
AAGGGTCTGAAACAGCTTGC+TGG	0.388228	1_1:-47432968	Msa0024760:CDS
AAGTTGTTGGTAGTTTGAAT+AGG	0.402079	1_1:+47434739	None:intergenic
AAGTTTCTTCAAGCTCAAGT+TGG	0.567049	1_1:-47434118	Msa0024760:CDS
AATAGTTAGAGGGAAAATGG+TGG	0.625963	1_1:+47434665	None:intergenic
AATGTGGTGACAAACTCTTT+TGG	0.390869	1_1:+47433031	None:intergenic
ACAAGTAGTTGATCTTGACA+AGG	0.633389	1_1:+47434565	None:intergenic
ACTGAGAAGACACAAGAGCT+TGG	0.499993	1_1:-47434208	Msa0024760:CDS
ACTTATGGAAACATTTAACA+AGG	0.595324	1_1:-47434086	Msa0024760:intron

Showing 1 to 10 of 53 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGTAGTGATTTCTAAGTTGT+TGG	+	chr1_1:47432998-47433017	None:intergenic	30.0%
TCAAATAGTTAGAGGGAAAA+TGG	+	chr1_1:47433062-47433081	None:intergenic	30.0%
ACTCAAATGATTACAAGCAA+GGG	+	chr1_1:47433929-47433948	None:intergenic	30.0%
TACTCAAATGATTACAAGCA+AGG	+	chr1_1:47433930-47433949	None:intergenic	30.0%
TAATGCTGTTGTTGTAGATT+TGG	-	chr1_1:47434038-47434057	Msa0024760:intron	30.0%
CTGTTATAAAAATTGACGGA+TGG	-	chr1_1:47434171-47434190	Msa0024760:CDS	30.0%
TTGACTATTTCAGGAAGAAA+AGG	-	chr1_1:47434581-47434600	Msa0024760:CDS	30.0%
TACAGTTTCTCTTGAACAAA+TGG	+	chr1_1:47434648-47434667	None:intergenic	30.0%
ATCATTATGATTGCTCAATG+TGG	+	chr1_1:47434709-47434728	None:intergenic	30.0%
ATCAAAACCTACCATTCTTA+AGG	-	chr1_1:47434734-47434753	Msa0024760:CDS	30.0%

Showing 1 to 10 of 186 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	47432934	47434809	47432934	ID=Msa0024760;Name=Msa0024760
chr1_1	mRNA	47432934	47434809	47432934	ID=Msa0024760-mRNA-1;Parent=Msa0024760;Name=Msa0024760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|312
chr1_1	exon	47434087	47434809	47434087	ID=Msa0024760-mRNA-1:exon:13496;Parent=Msa0024760-mRNA-1
chr1_1	exon	47432934	47433149	47432934	ID=Msa0024760-mRNA-1:exon:13495;Parent=Msa0024760-mRNA-1
chr1_1	CDS	47434087	47434809	47434087	ID=Msa0024760-mRNA-1:cds;Parent=Msa0024760-mRNA-1
chr1_1	CDS	47432934	47433149	47432934	ID=Msa0024760-mRNA-1:cds;Parent=Msa0024760-mRNA-1

Gene Sequence

>Msa0024760

ATGGGAGCACTTAGCACATACTTCAACTATAATTGTTACCCTTATCAACCTATTCAAACTACCAACAACTTAGAAATCACTACTTTTCAACATCATGAACAAGAACAATTTGTGCAACAAAACCACCATTTTCCCTCTAACTATTTGAATGAAACTTCTCATTTAGATGAAAGCTTCATTTTTCAAACTCCTTGTTTTTACTCAAATGAAACTTACCCTAACCCTTGTCAAGATCAACTACTTGTTGACTCCACTTTTTCTTCTCAAAATGATGGCTTTGTTTCAATGAATGAAATTTTCCCAAATGAGGAAGATTTCACCAATTACCTTACATGTCCAAAACGCCAAAAGCTATGCTACGAGAAGAAAAGAGAGGAACCACAACAAGAGCTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATGACTAACCCTAACCCTAACCCTTTTGCTTCCTTTGAGGTAGAACCCTTTGCTGCTTCAAAAATTGTTGATGTTGTTCAATGTGAGAAGAAAGTTGGTGAAAGGACTATCTCGTCGCAGAGTATCGCGGCGAGAGAAAGGAGAAGGAAGATAACTGAGAAGACACAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCAAAGATGAACACAGCAGAGATGCTTAATGCTGCTGCTAATTATGTCAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAACTTATGGAAACATTTAACAAGGAAGAAAAGGAACCTCCTCCAAGTGAAGATCTACACAAACTTCTTCTTTCTCCATTTGTTCAAGAGAAACTGTATTCAGAAGAAAAGTGCTTTGTTCCAAAAGAGTTTGTCACCACATTGAGCAATCATAATGATGTTCAATCAAAACCTACCATTCTTAAGGGTCTGAAACAGCTTGCTGGGACTGAGATTGAGAAGAAACCAAAGCAAGAATAG

Protein sequence

>Msa0024760

MGALSTYFNYNCYPYQPIQTTNNLEITTFQHHEQEQFVQQNHHFPSNYLNETSHLDESFIFQTPCFYSNETYPNPCQDQLLVDSTFSSQNDGFVSMNEIFPNEEDFTNYLTCPKRQKLCYEKKREEPQQELLNSTNFFVDEFMTNPNPNPFASFEVEPFAASKIVDVVQCEKKVGERTISSQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLNAAANYVKFLQAQVGMLQLMETFNKEEKEPPPSEDLHKLLLSPFVQEKLYSEEKCFVPKEFVTTLSNHNDVQSKPTILKGLKQLAGTEIEKKPKQE*