AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0024760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024760 MtrunA17_Chr1g0179061 93.802 242 12 2 1 241 1 240 1.89e-166 462
Msa0024760 MtrunA17_Chr2g0311101 81.056 322 27 10 1 312 13 310 1.58e-161 452
Msa0024760 MtrunA17_Chr8g0384141 58.491 53 22 0 182 234 125 177 2.02e-13 69.3
Msa0024760 MtrunA17_Chr3g0134001 58.491 53 22 0 182 234 182 234 1.42e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024760 AT1G30670.1 41.520 171 97 2 135 305 95 262 3.30e-29 112
Msa0024760 AT2G34820.1 42.254 213 115 4 97 305 81 289 2.65e-28 111
Msa0024760 AT3G21330.1 60.377 53 21 0 182 234 280 332 1.93e-13 70.5
Msa0024760 AT5G01305.1 50.000 58 29 0 182 239 48 105 1.32e-12 65.5
Msa0024760 AT4G00120.1 52.830 53 25 0 182 234 123 175 6.33e-12 63.9

Find 53 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGGAATGCTTCAACTTA+TGG 0.195386 1_1:-47434101 Msa0024760:CDS
ATCTCTGCTGTGTTCATCTT+TGG 0.238213 1_1:+47434166 None:intergenic
TTGGTGAAATCTTCCTCATT+TGG 0.290806 1_1:+47434487 None:intergenic
ATCAAAACCTACCATTCTTA+AGG 0.300143 1_1:-47432987 Msa0024760:CDS
TCAAATAGTTAGAGGGAAAA+TGG 0.318116 1_1:+47434662 None:intergenic
AAATAAAACTATTCTTGCTT+TGG 0.325467 1_1:+47432926 None:intergenic
TGGTGAAATCTTCCTCATTT+GGG 0.332786 1_1:+47434488 None:intergenic
GAAGCAAAAGGGTTAGGGTT+AGG 0.345524 1_1:+47434352 None:intergenic
AAGCAAAAGGGTTAGGGTTA+GGG 0.345934 1_1:+47434353 None:intergenic
TCTTCTCGTAGCATAGCTTT+TGG 0.365802 1_1:+47434443 None:intergenic
AGTTGATCTTGACAAGGGTT+AGG 0.369040 1_1:+47434571 None:intergenic
TCAAAGGAAGCAAAAGGGTT+AGG 0.369513 1_1:+47434346 None:intergenic
AGTAGTGATTTCTAAGTTGT+TGG 0.372241 1_1:+47434726 None:intergenic
GTAGTTTGAATAGGTTGATA+AGG 0.378786 1_1:+47434748 None:intergenic
TACAGTTTCTCTTGAACAAA+TGG 0.383908 1_1:+47433076 None:intergenic
AAGGGTCTGAAACAGCTTGC+TGG 0.388228 1_1:-47432968 Msa0024760:CDS
AATGTGGTGACAAACTCTTT+TGG 0.390869 1_1:+47433031 None:intergenic
GAGCTTGGGAAGTTGGTTCC+TGG 0.392352 1_1:-47434193 Msa0024760:CDS
GACACAAGAGCTTGGGAAGT+TGG 0.397999 1_1:-47434200 Msa0024760:CDS
AAGTTGTTGGTAGTTTGAAT+AGG 0.402079 1_1:+47434739 None:intergenic
TTGACTATTTCAGGAAGAAA+AGG 0.427645 1_1:-47433140 Msa0024760:intron
TAGTTTGAATAGGTTGATAA+GGG 0.429054 1_1:+47434749 None:intergenic
AGTTTCATTCAAATAGTTAG+AGG 0.435549 1_1:+47434654 None:intergenic
GTTGATCTTGACAAGGGTTA+GGG 0.453473 1_1:+47434572 None:intergenic
TCAAAACCTACCATTCTTAA+GGG 0.456430 1_1:-47432986 Msa0024760:CDS
CAAAGGAAGCAAAAGGGTTA+GGG 0.461232 1_1:+47434347 None:intergenic
AGAGTATCGCGGCGAGAGAA+AGG 0.466876 1_1:-47434243 Msa0024760:CDS
TCTACCTCAAAGGAAGCAAA+AGG 0.468900 1_1:+47434340 None:intergenic
TTGTGTAGATCTTCACTTGG+AGG 0.473071 1_1:+47433112 None:intergenic
GTTCAATGTGAGAAGAAAGT+TGG 0.488552 1_1:-47434286 Msa0024760:CDS
TGTAGATCTTCACTTGGAGG+AGG 0.494574 1_1:+47433115 None:intergenic
GTGTTCATCTTTGGTCCACC+AGG 0.499817 1_1:+47434175 None:intergenic
ACTGAGAAGACACAAGAGCT+TGG 0.499993 1_1:-47434208 Msa0024760:CDS
CTGAGAAGACACAAGAGCTT+GGG 0.500383 1_1:-47434207 Msa0024760:CDS
CTGTTTCAGACCCTTAAGAA+TGG 0.516519 1_1:+47432976 None:intergenic
AGGGTCTGAAACAGCTTGCT+GGG 0.522554 1_1:-47432967 Msa0024760:CDS
GTTTCATTCAAATAGTTAGA+GGG 0.549802 1_1:+47434655 None:intergenic
CTTGGGAAGTTGGTTCCTGG+TGG 0.551828 1_1:-47434190 Msa0024760:CDS
GTGAGAAGAAAGTTGGTGAA+AGG 0.566992 1_1:-47434279 Msa0024760:CDS
AAGTTTCTTCAAGCTCAAGT+TGG 0.567049 1_1:-47434118 Msa0024760:CDS
AGCAAAGGGTTCTACCTCAA+AGG 0.572532 1_1:+47434330 None:intergenic
AGTTTGTGTAGATCTTCACT+TGG 0.582386 1_1:+47433109 None:intergenic
TTCAGACCCTTAAGAATGGT+AGG 0.583734 1_1:+47432980 None:intergenic
GAGTTCAAAAGCTCTTGTTG+TGG 0.586358 1_1:+47434409 None:intergenic
TCGCGGCGAGAGAAAGGAGA+AGG 0.587504 1_1:-47434237 Msa0024760:CDS
ACTTATGGAAACATTTAACA+AGG 0.595324 1_1:-47434086 Msa0024760:intron
CTACCTCAAAGGAAGCAAAA+GGG 0.620756 1_1:+47434341 None:intergenic
AATAGTTAGAGGGAAAATGG+TGG 0.625963 1_1:+47434665 None:intergenic
ACAAGTAGTTGATCTTGACA+AGG 0.633389 1_1:+47434565 None:intergenic
CAAGTAGTTGATCTTGACAA+GGG 0.656926 1_1:+47434566 None:intergenic
ATGCTACGAGAAGAAAAGAG+AGG 0.663245 1_1:-47434434 Msa0024760:CDS
ATCATTATGATTGCTCAATG+TGG 0.666694 1_1:+47433015 None:intergenic
TATCTCGTCGCAGAGTATCG+CGG 0.686396 1_1:-47434254 Msa0024760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGTTGTAAATATCTAAA+TGG - chr1_1:47434011-47434030 Msa0024760:intron 15.0%
!! TATTGTTGTAAATATCTAAA+TGG - chr1_1:47434011-47434030 Msa0024760:intron 15.0%
!! CGTTTGATAAAAAAATATAG+AGG - chr1_1:47433955-47433974 Msa0024760:intron 20.0%
!! CATAATAACACTACAATAAA+TGG + chr1_1:47433986-47434005 None:intergenic 20.0%
!! TTTACTCCATGAAAATATTT+AGG - chr1_1:47434146-47434165 Msa0024760:CDS 20.0%
!! CGTTTGATAAAAAAATATAG+AGG - chr1_1:47433955-47433974 Msa0024760:intron 20.0%
!! CATAATAACACTACAATAAA+TGG + chr1_1:47433986-47434005 None:intergenic 20.0%
!! TTTACTCCATGAAAATATTT+AGG - chr1_1:47434146-47434165 Msa0024760:CDS 20.0%
!!! TAGTTTGAATAGGTTGATAA+GGG + chr1_1:47432975-47432994 None:intergenic 25.0%
! GTTTCATTCAAATAGTTAGA+GGG + chr1_1:47433069-47433088 None:intergenic 25.0%
! AGTTTCATTCAAATAGTTAG+AGG + chr1_1:47433070-47433089 None:intergenic 25.0%
! GTTTCATTTGAGTAAAAACA+AGG + chr1_1:47433126-47433145 None:intergenic 25.0%
!!! ATCATTTTGAGAAGAAAAAG+TGG + chr1_1:47433187-47433206 None:intergenic 25.0%
!!! ACTTTTTCTTCTCAAAATGA+TGG - chr1_1:47433186-47433205 Msa0024760:intron 25.0%
! AAACTCATCCACAAAAAAAT+TGG + chr1_1:47433340-47433359 None:intergenic 25.0%
! ACTTATGGAAACATTTAACA+AGG - chr1_1:47433635-47433654 Msa0024760:intron 25.0%
!! TTAAACTGTTTTGTGTACTT+AGG - chr1_1:47433747-47433766 Msa0024760:intron 25.0%
! AGAAAAACATCAAATTCACT+TGG + chr1_1:47433787-47433806 None:intergenic 25.0%
! AACTCAAAAACTAAATCAAG+TGG + chr1_1:47433849-47433868 None:intergenic 25.0%
! TTGTTTGTTCATTGCATATT+TGG - chr1_1:47433887-47433906 Msa0024760:intron 25.0%
! AAAGACAAAATTGAGACAAT+AGG + chr1_1:47434099-47434118 None:intergenic 25.0%
!! TATTTTCATGGAGTAAAAGT+TGG + chr1_1:47434143-47434162 None:intergenic 25.0%
!! ACAGTTCCTAAATATTTTCA+TGG + chr1_1:47434155-47434174 None:intergenic 25.0%
! GGAACTGTTATAAAAATTGA+CGG - chr1_1:47434167-47434186 Msa0024760:CDS 25.0%
! TGTTAGGTTTAAGAAAATGT+TGG - chr1_1:47434197-47434216 Msa0024760:CDS 25.0%
!! CACGTATATATCTTAGATTT+TGG - chr1_1:47434476-47434495 Msa0024760:CDS 25.0%
!! TTTTGCTAATTGACTATTTC+AGG - chr1_1:47434572-47434591 Msa0024760:CDS 25.0%
!!! TAGTTTGAATAGGTTGATAA+GGG + chr1_1:47432975-47432994 None:intergenic 25.0%
! GTTTCATTCAAATAGTTAGA+GGG + chr1_1:47433069-47433088 None:intergenic 25.0%
! AGTTTCATTCAAATAGTTAG+AGG + chr1_1:47433070-47433089 None:intergenic 25.0%
! GTTTCATTTGAGTAAAAACA+AGG + chr1_1:47433126-47433145 None:intergenic 25.0%
!!! ATCATTTTGAGAAGAAAAAG+TGG + chr1_1:47433187-47433206 None:intergenic 25.0%
!!! ACTTTTTCTTCTCAAAATGA+TGG - chr1_1:47433186-47433205 Msa0024760:intron 25.0%
! AAACTCATCCACAAAAAAAT+TGG + chr1_1:47433340-47433359 None:intergenic 25.0%
! ACTTATGGAAACATTTAACA+AGG - chr1_1:47433635-47433654 Msa0024760:intron 25.0%
!! TTAAACTGTTTTGTGTACTT+AGG - chr1_1:47433747-47433766 Msa0024760:intron 25.0%
! AGAAAAACATCAAATTCACT+TGG + chr1_1:47433787-47433806 None:intergenic 25.0%
! AACTCAAAAACTAAATCAAG+TGG + chr1_1:47433849-47433868 None:intergenic 25.0%
! TTGTTTGTTCATTGCATATT+TGG - chr1_1:47433887-47433906 Msa0024760:intron 25.0%
! AAAGACAAAATTGAGACAAT+AGG + chr1_1:47434099-47434118 None:intergenic 25.0%
!! TATTTTCATGGAGTAAAAGT+TGG + chr1_1:47434143-47434162 None:intergenic 25.0%
!! ACAGTTCCTAAATATTTTCA+TGG + chr1_1:47434155-47434174 None:intergenic 25.0%
! GGAACTGTTATAAAAATTGA+CGG - chr1_1:47434167-47434186 Msa0024760:CDS 25.0%
! TGTTAGGTTTAAGAAAATGT+TGG - chr1_1:47434197-47434216 Msa0024760:CDS 25.0%
!! CACGTATATATCTTAGATTT+TGG - chr1_1:47434476-47434495 Msa0024760:CDS 25.0%
!! TTTTGCTAATTGACTATTTC+AGG - chr1_1:47434572-47434591 Msa0024760:CDS 25.0%
!! GTAGTTTGAATAGGTTGATA+AGG + chr1_1:47432976-47432995 None:intergenic 30.0%
!! AAGTTGTTGGTAGTTTGAAT+AGG + chr1_1:47432985-47433004 None:intergenic 30.0%
AGTAGTGATTTCTAAGTTGT+TGG + chr1_1:47432998-47433017 None:intergenic 30.0%
TCAAATAGTTAGAGGGAAAA+TGG + chr1_1:47433062-47433081 None:intergenic 30.0%
! GAATGAAATTTTCCCAAATG+AGG - chr1_1:47433221-47433240 Msa0024760:intron 30.0%
! TTTTGGACATGTAAGGTAAT+TGG + chr1_1:47433256-47433275 None:intergenic 30.0%
!!! GAACTCAACCAATTTTTTTG+TGG - chr1_1:47433329-47433348 Msa0024760:intron 30.0%
!!! ACAATTTTTGAAGCAGCAAA+GGG + chr1_1:47433408-47433427 None:intergenic 30.0%
!!! AACAATTTTTGAAGCAGCAA+AGG + chr1_1:47433409-47433428 None:intergenic 30.0%
ACTCAAATGATTACAAGCAA+GGG + chr1_1:47433929-47433948 None:intergenic 30.0%
TACTCAAATGATTACAAGCA+AGG + chr1_1:47433930-47433949 None:intergenic 30.0%
TAATGCTGTTGTTGTAGATT+TGG - chr1_1:47434038-47434057 Msa0024760:intron 30.0%
CTGTTATAAAAATTGACGGA+TGG - chr1_1:47434171-47434190 Msa0024760:CDS 30.0%
!! CAATAAACGAGAGAGTATTT+AGG - chr1_1:47434306-47434325 Msa0024760:CDS 30.0%
TTGACTATTTCAGGAAGAAA+AGG - chr1_1:47434581-47434600 Msa0024760:CDS 30.0%
TACAGTTTCTCTTGAACAAA+TGG + chr1_1:47434648-47434667 None:intergenic 30.0%
ATCATTATGATTGCTCAATG+TGG + chr1_1:47434709-47434728 None:intergenic 30.0%
ATCAAAACCTACCATTCTTA+AGG - chr1_1:47434734-47434753 Msa0024760:CDS 30.0%
TCAAAACCTACCATTCTTAA+GGG - chr1_1:47434735-47434754 Msa0024760:CDS 30.0%
!! GTAGTTTGAATAGGTTGATA+AGG + chr1_1:47432976-47432995 None:intergenic 30.0%
!! AAGTTGTTGGTAGTTTGAAT+AGG + chr1_1:47432985-47433004 None:intergenic 30.0%
AGTAGTGATTTCTAAGTTGT+TGG + chr1_1:47432998-47433017 None:intergenic 30.0%
TCAAATAGTTAGAGGGAAAA+TGG + chr1_1:47433062-47433081 None:intergenic 30.0%
! GAATGAAATTTTCCCAAATG+AGG - chr1_1:47433221-47433240 Msa0024760:intron 30.0%
! TTTTGGACATGTAAGGTAAT+TGG + chr1_1:47433256-47433275 None:intergenic 30.0%
!!! GAACTCAACCAATTTTTTTG+TGG - chr1_1:47433329-47433348 Msa0024760:intron 30.0%
!!! ACAATTTTTGAAGCAGCAAA+GGG + chr1_1:47433408-47433427 None:intergenic 30.0%
!!! AACAATTTTTGAAGCAGCAA+AGG + chr1_1:47433409-47433428 None:intergenic 30.0%
ACTCAAATGATTACAAGCAA+GGG + chr1_1:47433929-47433948 None:intergenic 30.0%
TACTCAAATGATTACAAGCA+AGG + chr1_1:47433930-47433949 None:intergenic 30.0%
TAATGCTGTTGTTGTAGATT+TGG - chr1_1:47434038-47434057 Msa0024760:intron 30.0%
CTGTTATAAAAATTGACGGA+TGG - chr1_1:47434171-47434190 Msa0024760:CDS 30.0%
!! CAATAAACGAGAGAGTATTT+AGG - chr1_1:47434306-47434325 Msa0024760:CDS 30.0%
TTGACTATTTCAGGAAGAAA+AGG - chr1_1:47434581-47434600 Msa0024760:CDS 30.0%
TACAGTTTCTCTTGAACAAA+TGG + chr1_1:47434648-47434667 None:intergenic 30.0%
ATCATTATGATTGCTCAATG+TGG + chr1_1:47434709-47434728 None:intergenic 30.0%
ATCAAAACCTACCATTCTTA+AGG - chr1_1:47434734-47434753 Msa0024760:CDS 30.0%
TCAAAACCTACCATTCTTAA+GGG - chr1_1:47434735-47434754 Msa0024760:CDS 30.0%
AATAGTTAGAGGGAAAATGG+TGG + chr1_1:47433059-47433078 None:intergenic 35.0%
CAAGTAGTTGATCTTGACAA+GGG + chr1_1:47433158-47433177 None:intergenic 35.0%
ACAAGTAGTTGATCTTGACA+AGG + chr1_1:47433159-47433178 None:intergenic 35.0%
TGGTGAAATCTTCCTCATTT+GGG + chr1_1:47433236-47433255 None:intergenic 35.0%
TTGGTGAAATCTTCCTCATT+TGG + chr1_1:47433237-47433256 None:intergenic 35.0%
GTTCAATGTGAGAAGAAAGT+TGG - chr1_1:47433435-47433454 Msa0024760:intron 35.0%
AAGTTTCTTCAAGCTCAAGT+TGG - chr1_1:47433603-47433622 Msa0024760:intron 35.0%
AGTTGGAATGCTTCAACTTA+TGG - chr1_1:47433620-47433639 Msa0024760:intron 35.0%
GCAATGAACAAACAAACTCT+AGG + chr1_1:47433882-47433901 None:intergenic 35.0%
ATTGAGACAATAGGTAGTCA+TGG + chr1_1:47434090-47434109 None:intergenic 35.0%
! AATTGACGGATGGAATTGTT+AGG - chr1_1:47434181-47434200 Msa0024760:CDS 35.0%
AGGAAACGGTTAATAAGAAG+AGG - chr1_1:47434276-47434295 Msa0024760:CDS 35.0%
CGGTTAATAAGAAGAGGAAA+TGG - chr1_1:47434282-47434301 Msa0024760:CDS 35.0%
CAAGTGTATATCAAATGAGC+TGG - chr1_1:47434334-47434353 Msa0024760:CDS 35.0%
GGCTATGTAACTGTTTAACA+AGG - chr1_1:47434355-47434374 Msa0024760:CDS 35.0%
AGTTTGTGTAGATCTTCACT+TGG + chr1_1:47434615-47434634 None:intergenic 35.0%
! AATGTGGTGACAAACTCTTT+TGG + chr1_1:47434693-47434712 None:intergenic 35.0%
AATAGTTAGAGGGAAAATGG+TGG + chr1_1:47433059-47433078 None:intergenic 35.0%
CAAGTAGTTGATCTTGACAA+GGG + chr1_1:47433158-47433177 None:intergenic 35.0%
ACAAGTAGTTGATCTTGACA+AGG + chr1_1:47433159-47433178 None:intergenic 35.0%
TGGTGAAATCTTCCTCATTT+GGG + chr1_1:47433236-47433255 None:intergenic 35.0%
TTGGTGAAATCTTCCTCATT+TGG + chr1_1:47433237-47433256 None:intergenic 35.0%
GTTCAATGTGAGAAGAAAGT+TGG - chr1_1:47433435-47433454 Msa0024760:intron 35.0%
AAGTTTCTTCAAGCTCAAGT+TGG - chr1_1:47433603-47433622 Msa0024760:intron 35.0%
AGTTGGAATGCTTCAACTTA+TGG - chr1_1:47433620-47433639 Msa0024760:intron 35.0%
GCAATGAACAAACAAACTCT+AGG + chr1_1:47433882-47433901 None:intergenic 35.0%
ATTGAGACAATAGGTAGTCA+TGG + chr1_1:47434090-47434109 None:intergenic 35.0%
! AATTGACGGATGGAATTGTT+AGG - chr1_1:47434181-47434200 Msa0024760:CDS 35.0%
AGGAAACGGTTAATAAGAAG+AGG - chr1_1:47434276-47434295 Msa0024760:CDS 35.0%
CGGTTAATAAGAAGAGGAAA+TGG - chr1_1:47434282-47434301 Msa0024760:CDS 35.0%
CAAGTGTATATCAAATGAGC+TGG - chr1_1:47434334-47434353 Msa0024760:CDS 35.0%
GGCTATGTAACTGTTTAACA+AGG - chr1_1:47434355-47434374 Msa0024760:CDS 35.0%
AGTTTGTGTAGATCTTCACT+TGG + chr1_1:47434615-47434634 None:intergenic 35.0%
! AATGTGGTGACAAACTCTTT+TGG + chr1_1:47434693-47434712 None:intergenic 35.0%
GTTGATCTTGACAAGGGTTA+GGG + chr1_1:47433152-47433171 None:intergenic 40.0%
AGTTGATCTTGACAAGGGTT+AGG + chr1_1:47433153-47433172 None:intergenic 40.0%
!! TTTGGCGTTTTGGACATGTA+AGG + chr1_1:47433263-47433282 None:intergenic 40.0%
! TAGCATAGCTTTTGGCGTTT+TGG + chr1_1:47433273-47433292 None:intergenic 40.0%
! TCTTCTCGTAGCATAGCTTT+TGG + chr1_1:47433281-47433300 None:intergenic 40.0%
ATGCTACGAGAAGAAAAGAG+AGG - chr1_1:47433287-47433306 Msa0024760:intron 40.0%
GAGTTCAAAAGCTCTTGTTG+TGG + chr1_1:47433315-47433334 None:intergenic 40.0%
AAGCAAAAGGGTTAGGGTTA+GGG + chr1_1:47433371-47433390 None:intergenic 40.0%
CAAAGGAAGCAAAAGGGTTA+GGG + chr1_1:47433377-47433396 None:intergenic 40.0%
TCAAAGGAAGCAAAAGGGTT+AGG + chr1_1:47433378-47433397 None:intergenic 40.0%
! TAACCCTTTTGCTTCCTTTG+AGG - chr1_1:47433377-47433396 Msa0024760:intron 40.0%
CTACCTCAAAGGAAGCAAAA+GGG + chr1_1:47433383-47433402 None:intergenic 40.0%
TCTACCTCAAAGGAAGCAAA+AGG + chr1_1:47433384-47433403 None:intergenic 40.0%
!! GTGAGAAGAAAGTTGGTGAA+AGG - chr1_1:47433442-47433461 Msa0024760:intron 40.0%
ATCTCTGCTGTGTTCATCTT+TGG + chr1_1:47433558-47433577 None:intergenic 40.0%
AGAGAGAGAGATAGAGGAAA+CGG - chr1_1:47434262-47434281 Msa0024760:CDS 40.0%
TTGTGTAGATCTTCACTTGG+AGG + chr1_1:47434612-47434631 None:intergenic 40.0%
TTCAGACCCTTAAGAATGGT+AGG + chr1_1:47434744-47434763 None:intergenic 40.0%
CTGTTTCAGACCCTTAAGAA+TGG + chr1_1:47434748-47434767 None:intergenic 40.0%
GTTGATCTTGACAAGGGTTA+GGG + chr1_1:47433152-47433171 None:intergenic 40.0%
AGTTGATCTTGACAAGGGTT+AGG + chr1_1:47433153-47433172 None:intergenic 40.0%
!! TTTGGCGTTTTGGACATGTA+AGG + chr1_1:47433263-47433282 None:intergenic 40.0%
! TAGCATAGCTTTTGGCGTTT+TGG + chr1_1:47433273-47433292 None:intergenic 40.0%
! TCTTCTCGTAGCATAGCTTT+TGG + chr1_1:47433281-47433300 None:intergenic 40.0%
ATGCTACGAGAAGAAAAGAG+AGG - chr1_1:47433287-47433306 Msa0024760:intron 40.0%
GAGTTCAAAAGCTCTTGTTG+TGG + chr1_1:47433315-47433334 None:intergenic 40.0%
AAGCAAAAGGGTTAGGGTTA+GGG + chr1_1:47433371-47433390 None:intergenic 40.0%
CAAAGGAAGCAAAAGGGTTA+GGG + chr1_1:47433377-47433396 None:intergenic 40.0%
TCAAAGGAAGCAAAAGGGTT+AGG + chr1_1:47433378-47433397 None:intergenic 40.0%
! TAACCCTTTTGCTTCCTTTG+AGG - chr1_1:47433377-47433396 Msa0024760:intron 40.0%
CTACCTCAAAGGAAGCAAAA+GGG + chr1_1:47433383-47433402 None:intergenic 40.0%
TCTACCTCAAAGGAAGCAAA+AGG + chr1_1:47433384-47433403 None:intergenic 40.0%
!! GTGAGAAGAAAGTTGGTGAA+AGG - chr1_1:47433442-47433461 Msa0024760:intron 40.0%
ATCTCTGCTGTGTTCATCTT+TGG + chr1_1:47433558-47433577 None:intergenic 40.0%
AGAGAGAGAGATAGAGGAAA+CGG - chr1_1:47434262-47434281 Msa0024760:CDS 40.0%
TTGTGTAGATCTTCACTTGG+AGG + chr1_1:47434612-47434631 None:intergenic 40.0%
TTCAGACCCTTAAGAATGGT+AGG + chr1_1:47434744-47434763 None:intergenic 40.0%
CTGTTTCAGACCCTTAAGAA+TGG + chr1_1:47434748-47434767 None:intergenic 40.0%
GAAGCAAAAGGGTTAGGGTT+AGG + chr1_1:47433372-47433391 None:intergenic 45.0%
AGCAAAGGGTTCTACCTCAA+AGG + chr1_1:47433394-47433413 None:intergenic 45.0%
ACTGAGAAGACACAAGAGCT+TGG - chr1_1:47433513-47433532 Msa0024760:intron 45.0%
CTGAGAAGACACAAGAGCTT+GGG - chr1_1:47433514-47433533 Msa0024760:intron 45.0%
AGAGAGAGAGAGAGAGATAG+AGG - chr1_1:47434256-47434275 Msa0024760:CDS 45.0%
TGTAGATCTTCACTTGGAGG+AGG + chr1_1:47434609-47434628 None:intergenic 45.0%
GAAGCAAAAGGGTTAGGGTT+AGG + chr1_1:47433372-47433391 None:intergenic 45.0%
AGCAAAGGGTTCTACCTCAA+AGG + chr1_1:47433394-47433413 None:intergenic 45.0%
ACTGAGAAGACACAAGAGCT+TGG - chr1_1:47433513-47433532 Msa0024760:intron 45.0%
CTGAGAAGACACAAGAGCTT+GGG - chr1_1:47433514-47433533 Msa0024760:intron 45.0%
AGAGAGAGAGAGAGAGATAG+AGG - chr1_1:47434256-47434275 Msa0024760:CDS 45.0%
TGTAGATCTTCACTTGGAGG+AGG + chr1_1:47434609-47434628 None:intergenic 45.0%
!! TATCTCGTCGCAGAGTATCG+CGG - chr1_1:47433467-47433486 Msa0024760:intron 50.0%
GACACAAGAGCTTGGGAAGT+TGG - chr1_1:47433521-47433540 Msa0024760:intron 50.0%
GTGTTCATCTTTGGTCCACC+AGG + chr1_1:47433549-47433568 None:intergenic 50.0%
! AAGGGTCTGAAACAGCTTGC+TGG - chr1_1:47434753-47434772 Msa0024760:CDS 50.0%
! AGGGTCTGAAACAGCTTGCT+GGG - chr1_1:47434754-47434773 Msa0024760:CDS 50.0%
!! TATCTCGTCGCAGAGTATCG+CGG - chr1_1:47433467-47433486 Msa0024760:intron 50.0%
GACACAAGAGCTTGGGAAGT+TGG - chr1_1:47433521-47433540 Msa0024760:intron 50.0%
GTGTTCATCTTTGGTCCACC+AGG + chr1_1:47433549-47433568 None:intergenic 50.0%
! AAGGGTCTGAAACAGCTTGC+TGG - chr1_1:47434753-47434772 Msa0024760:CDS 50.0%
! AGGGTCTGAAACAGCTTGCT+GGG - chr1_1:47434754-47434773 Msa0024760:CDS 50.0%
!! AGAGTATCGCGGCGAGAGAA+AGG - chr1_1:47433478-47433497 Msa0024760:intron 55.0%
! GAGCTTGGGAAGTTGGTTCC+TGG - chr1_1:47433528-47433547 Msa0024760:intron 55.0%
! CTTGGGAAGTTGGTTCCTGG+TGG - chr1_1:47433531-47433550 Msa0024760:intron 55.0%
!! AGAGTATCGCGGCGAGAGAA+AGG - chr1_1:47433478-47433497 Msa0024760:intron 55.0%
! GAGCTTGGGAAGTTGGTTCC+TGG - chr1_1:47433528-47433547 Msa0024760:intron 55.0%
! CTTGGGAAGTTGGTTCCTGG+TGG - chr1_1:47433531-47433550 Msa0024760:intron 55.0%
TCGCGGCGAGAGAAAGGAGA+AGG - chr1_1:47433484-47433503 Msa0024760:intron 60.0%
TCGCGGCGAGAGAAAGGAGA+AGG - chr1_1:47433484-47433503 Msa0024760:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 47432934 47434809 47432934 ID=Msa0024760;Name=Msa0024760
chr1_1 mRNA 47432934 47434809 47432934 ID=Msa0024760-mRNA-1;Parent=Msa0024760;Name=Msa0024760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|312
chr1_1 exon 47434087 47434809 47434087 ID=Msa0024760-mRNA-1:exon:13496;Parent=Msa0024760-mRNA-1
chr1_1 exon 47432934 47433149 47432934 ID=Msa0024760-mRNA-1:exon:13495;Parent=Msa0024760-mRNA-1
chr1_1 CDS 47434087 47434809 47434087 ID=Msa0024760-mRNA-1:cds;Parent=Msa0024760-mRNA-1
chr1_1 CDS 47432934 47433149 47432934 ID=Msa0024760-mRNA-1:cds;Parent=Msa0024760-mRNA-1
Gene Sequence

>Msa0024760

ATGGGAGCACTTAGCACATACTTCAACTATAATTGTTACCCTTATCAACCTATTCAAACTACCAACAACTTAGAAATCACTACTTTTCAACATCATGAACAAGAACAATTTGTGCAACAAAACCACCATTTTCCCTCTAACTATTTGAATGAAACTTCTCATTTAGATGAAAGCTTCATTTTTCAAACTCCTTGTTTTTACTCAAATGAAACTTACCCTAACCCTTGTCAAGATCAACTACTTGTTGACTCCACTTTTTCTTCTCAAAATGATGGCTTTGTTTCAATGAATGAAATTTTCCCAAATGAGGAAGATTTCACCAATTACCTTACATGTCCAAAACGCCAAAAGCTATGCTACGAGAAGAAAAGAGAGGAACCACAACAAGAGCTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATGACTAACCCTAACCCTAACCCTTTTGCTTCCTTTGAGGTAGAACCCTTTGCTGCTTCAAAAATTGTTGATGTTGTTCAATGTGAGAAGAAAGTTGGTGAAAGGACTATCTCGTCGCAGAGTATCGCGGCGAGAGAAAGGAGAAGGAAGATAACTGAGAAGACACAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCAAAGATGAACACAGCAGAGATGCTTAATGCTGCTGCTAATTATGTCAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAACTTATGGAAACATTTAACAAGGAAGAAAAGGAACCTCCTCCAAGTGAAGATCTACACAAACTTCTTCTTTCTCCATTTGTTCAAGAGAAACTGTATTCAGAAGAAAAGTGCTTTGTTCCAAAAGAGTTTGTCACCACATTGAGCAATCATAATGATGTTCAATCAAAACCTACCATTCTTAAGGGTCTGAAACAGCTTGCTGGGACTGAGATTGAGAAGAAACCAAAGCAAGAATAG
Protein sequence

>Msa0024760

MGALSTYFNYNCYPYQPIQTTNNLEITTFQHHEQEQFVQQNHHFPSNYLNETSHLDESFIFQTPCFYSNETYPNPCQDQLLVDSTFSSQNDGFVSMNEIFPNEEDFTNYLTCPKRQKLCYEKKREEPQQELLNSTNFFVDEFMTNPNPNPFASFEVEPFAASKIVDVVQCEKKVGERTISSQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLNAAANYVKFLQAQVGMLQLMETFNKEEKEPPPSEDLHKLLLSPFVQEKLYSEEKCFVPKEFVTTLSNHNDVQSKPTILKGLKQLAGTEIEKKPKQE*