AlfalfaGEDB | Msa0025150

M. sativa cultivar zhongmu-4 / Msa0025150

KEGG: -
GO: -
PFAM: PF13837.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0025150	sp\|Q9LSA9\|PUMPK_ARATH	53.906	256	113	2	255	508	78	330	1.17e-89	281

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0025150	TF	Trihelix

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0025150	MtrunA17_Chr1g0179531	99.805	512	1	0	1	512	1	512	0.0	1069
Msa0025150	MtrunA17_Chr8g0384081	50.758	264	120	3	252	508	56	316	2.28e-87	271
Msa0025150	MtrunA17_Chr2g0283871	35.644	101	59	3	133	228	23	122	1.20e-15	78.2
Msa0025150	MtrunA17_Chr4g0041151	36.275	102	58	3	133	228	31	131	1.30e-15	77.8
Msa0025150	MtrunA17_Chr1g0164461	41.346	104	51	4	121	221	27	123	1.57e-15	75.1
Msa0025150	MtrunA17_Chr6g0485241	37.255	102	61	2	131	230	128	228	2.24e-15	77.8
Msa0025150	MtrunA17_Chr3g0082261	41.346	104	51	4	121	221	27	123	1.75e-14	74.7
Msa0025150	MtrunA17_Chr5g0402321	34.000	100	60	2	133	226	22	121	1.49e-13	70.1
Msa0025150	MtrunA17_Chr4g0066271	38.000	100	58	2	133	228	117	216	3.74e-12	68.2

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0025150	AT3G10030.1	56.364	550	187	7	1	509	1	538	0.0	591
Msa0025150	AT3G10030.2	55.086	521	181	7	1	480	1	509	0.0	542
Msa0025150	AT3G18680.1	53.906	256	113	2	255	508	78	330	1.18e-90	281
Msa0025150	AT3G18680.2	47.751	289	113	3	255	508	78	363	2.03e-83	263
Msa0025150	AT3G54390.2	36.441	118	65	3	127	242	48	157	3.57e-17	82.8
Msa0025150	AT3G54390.1	36.441	118	65	3	127	242	32	141	3.58e-17	82.8
Msa0025150	AT3G58630.1	30.872	149	78	3	133	256	26	174	2.82e-16	80.5
Msa0025150	AT3G58630.2	30.872	149	78	3	133	256	26	174	3.17e-16	80.1
Msa0025150	AT3G14180.1	37.607	117	66	4	112	224	63	176	6.38e-16	80.5
Msa0025150	AT3G24490.1	31.667	120	73	3	105	221	64	177	1.33e-12	69.3

Showing 1 to 10 of 11 entries

Previous1 2Next

Find 174 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGTTTCTAGCGGCAA+CGG	0.561702	1_1:+48160991	Msa0025150:CDS
AAAGGAAGAGTTGTTATATT+TGG	0.225653	1_1:+48164175	Msa0025150:CDS
AAATTTACTCAGCTGAATCG+AGG	0.626415	1_1:+48161108	Msa0025150:CDS
AACATTTCAAAAGCTTTGTG+TGG	0.537883	1_1:+48164942	Msa0025150:CDS
AACCTTAGGGTCAATATTGC+AGG	0.385341	1_1:-48162750	None:intergenic
AACTTCATTTGAAACTAACA+TGG	0.588078	1_1:-48162922	None:intergenic
AAGACGGTGAAAGGGTTTGA+AGG	0.545461	1_1:-48160628	None:intergenic
AAGCAGATGGAACATATTGT+TGG	0.431908	1_1:+48161309	Msa0025150:CDS
AAGCATACGAAAACGGAATT+TGG	0.135590	1_1:-48165106	None:intergenic
AAGCATTGTCAAACCTTAGA+TGG	0.420124	1_1:+48162678	Msa0025150:CDS

Showing 1 to 10 of 174 entries

Previous1 2 3 4 5…18Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATAGAAAAGATCGAGAAGAA+TGG	+	chr1_1:48161043-48161062	Msa0025150:CDS	30.0%
GAGAGACATAGAATGAATAA+TGG	+	chr1_1:48161255-48161274	Msa0025150:CDS	30.0%
TTTATCATCATCAGCAAACT+TGG	-	chr1_1:48161349-48161368	None:intergenic	30.0%
TTATTTGTATGCTTGTGGAT+TGG	+	chr1_1:48161437-48161456	Msa0025150:intron	30.0%
AAAGTAAACACATAAGTCCT+GGG	-	chr1_1:48161795-48161814	None:intergenic	30.0%
TAAAGTAAACACATAAGTCC+TGG	-	chr1_1:48161796-48161815	None:intergenic	30.0%
TTTACTTGACATGTTTAAGG+TGG	+	chr1_1:48161965-48161984	Msa0025150:intron	30.0%
ATAGTTGTATGTTGAGTGTT+TGG	+	chr1_1:48162054-48162073	Msa0025150:intron	30.0%
TAGTTGTATGTTGAGTGTTT+GGG	+	chr1_1:48162055-48162074	Msa0025150:intron	30.0%
ACTTCTACTTAAACAAAGCT+TGG	+	chr1_1:48162213-48162232	Msa0025150:intron	30.0%

Showing 1 to 10 of 358 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	48160467	48165318	48160467	ID=Msa0025150;Name=Msa0025150
chr1_1	mRNA	48160467	48165318	48160467	ID=Msa0025150-mRNA-1;Parent=Msa0025150;Name=Msa0025150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=200\|1\|1\|1\|1\|1\|7\|308\|512
chr1_1	exon	48160467	48161409	48160467	ID=Msa0025150-mRNA-1:exon:13761;Parent=Msa0025150-mRNA-1
chr1_1	exon	48162625	48162769	48162625	ID=Msa0025150-mRNA-1:exon:13762;Parent=Msa0025150-mRNA-1
chr1_1	exon	48162918	48162971	48162918	ID=Msa0025150-mRNA-1:exon:13763;Parent=Msa0025150-mRNA-1
chr1_1	exon	48163063	48163154	48163063	ID=Msa0025150-mRNA-1:exon:13764;Parent=Msa0025150-mRNA-1
chr1_1	exon	48164033	48164268	48164033	ID=Msa0025150-mRNA-1:exon:13765;Parent=Msa0025150-mRNA-1
chr1_1	exon	48164398	48164568	48164398	ID=Msa0025150-mRNA-1:exon:13766;Parent=Msa0025150-mRNA-1
chr1_1	exon	48164913	48165318	48164913	ID=Msa0025150-mRNA-1:exon:13767;Parent=Msa0025150-mRNA-1
chr1_1	five_prime_UTR	48160467	48160666	48160467	ID=Msa0025150-mRNA-1:five_prime_utr;Parent=Msa0025150-mRNA-1
chr1_1	CDS	48160667	48161409	48160667	ID=Msa0025150-mRNA-1:cds;Parent=Msa0025150-mRNA-1
chr1_1	CDS	48162625	48162769	48162625	ID=Msa0025150-mRNA-1:cds;Parent=Msa0025150-mRNA-1
chr1_1	CDS	48162918	48162971	48162918	ID=Msa0025150-mRNA-1:cds;Parent=Msa0025150-mRNA-1
chr1_1	CDS	48163063	48163154	48163063	ID=Msa0025150-mRNA-1:cds;Parent=Msa0025150-mRNA-1
chr1_1	CDS	48164033	48164268	48164033	ID=Msa0025150-mRNA-1:cds;Parent=Msa0025150-mRNA-1
chr1_1	CDS	48164398	48164568	48164398	ID=Msa0025150-mRNA-1:cds;Parent=Msa0025150-mRNA-1
chr1_1	CDS	48164913	48165010	48164913	ID=Msa0025150-mRNA-1:cds;Parent=Msa0025150-mRNA-1
chr1_1	three_prime_UTR	48165011	48165318	48165011	ID=Msa0025150-mRNA-1:three_prime_utr;Parent=Msa0025150-mRNA-1

Gene Sequence

>Msa0025150

ATGGCTTCTTGCGACGACGACGACGATTTCTCTCTCCTCCACGACGATAACAACCACCACTCTCACCACCACCACCTCCACCAAACCTTCGCACCTCACCACCACCACAACCACCACTCTCACCACCACTTCTCCACAGCTTCAGTCCAATCCAAACACATCACCACCTCCGTCTCCGCCGCCGTCGCCGACGACGACGGAGACGACACCGATGACTACGGTAATCCATTCGACGATGACGCTGGTAGCGAGAAACGTAAAGATCGAGATCGCGATGAGATCTGTGATGCAACGACGTCGTATGGATTCAACAACAAACGGTCAAAACCTGTTTCTAGCGGCAACGGTGGAGGAAGCGCCGGAGTAGGAGCAGAGTATAGAAAAGATCGAGAAGAATGGAGTGATACAGCGATAGTGTGTTTACTCGAAGCTTATACAGAGAAATTTACTCAGCTGAATCGAGGGAATCTAAGAGGAAGAGATTGGGAAGAAGTAGCTTCAATGGTGAGTGAAAGATGTGAGAATCAATCGAAGAGTGTGGAACAGTGTAAGAACAAGGTTGATAATTTGAAGAAAAGGTATAAGCTAGAGAGACATAGAATGAATAATGGTTGCATTTCTGCTAGTCATTGGCCTTGGTTTAAGCAGATGGAACATATTGTTGGGAATTCGCTTCCGGCCAAGTTTGCTGATGATGATAAAGCTATTGTTCCTGCTTCCATTTCACCCAGGCAATCTAAGAGATATGGAGTGGCTACGTCCAGCAGTGGAGGTCAAGTAAACAGCCTGAAGTCCAAAGCATTGTCAAACCTTAGATGGCGGAGAGTTGTTCTAAAAATTAGTGGATCGGCACTTACTGGATCCGATACCTGCAATATTGACCCTAAGGTGGCCATGTTAGTTTCAAATGAAGTTGCAATAGCTTCCCGTCTTGGTGTGGAGGTAGCAATTGTTGTTGGAGGTCGTAATTTCTTCTGTGGAGATGCATGGGTAACTGCAACTGGTTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACTGTGATGAACTCCTTACTGCTTCAATCAACTTTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTTCAATGCAGGCGTTTGCTGAACCGTACAATAGGCAACGGGCCATCAGGCATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGCATTGGTTTTGGTGCTGGTAATCCACTTTTCTCAACCGACATATCTGCTGCTCTTCGGGCTTCAGAGGTTAATGCTCAGGCTGTCCTCAAAGGTACCAACGTAGATGGCGTATATGACTGCAACTCACGAGACAACAATTTCACTTTCGAGCACATATCCTTCAGGGAGCTAGTGTCTAGAGGTGTCACCTCTATGGATATGTCAGCCCTGACATTCTGCGAGGAAAATGCCATTCCTGTTGTAGTTTTTAATCTATTGGCACCCGGGAACATTTCAAAAGCTTTGTGTGGAGAACAAGTTGGCACACTTATTGACCAAACTGGAGCAATAAGCTAA

Protein sequence

>Msa0025150

MASCDDDDDFSLLHDDNNHHSHHHHLHQTFAPHHHHNHHSHHHFSTASVQSKHITTSVSAAVADDDGDDTDDYGNPFDDDAGSEKRKDRDRDEICDATTSYGFNNKRSKPVSSGNGGGSAGVGAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVASMVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISASHWPWFKQMEHIVGNSLPAKFADDDKAIVPASISPRQSKRYGVATSSSGGQVNSLKSKALSNLRWRRVVLKISGSALTGSDTCNIDPKVAMLVSNEVAIASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSLLLQSTLEKMGVQTRVQTSVSMQAFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDISAALRASEVNAQAVLKGTNVDGVYDCNSRDNNFTFEHISFRELVSRGVTSMDMSALTFCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQTGAIS*