Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025320 | sp|Q9SZL8|FRS5_ARATH | 26.887 | 636 | 389 | 15 | 50 | 679 | 72 | 637 | 6.86e-68 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025320 | D3YBB9 | 78.765 | 810 | 145 | 5 | 14 | 812 | 54 | 847 | 0.0 | 1317 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0025320 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025320 | MtrunA17_Chr3g0088371 | 81.152 | 191 | 33 | 1 | 632 | 819 | 1 | 191 | 1.33e-103 | 317 |
| Msa0025320 | MtrunA17_Chr2g0324011 | 31.073 | 634 | 361 | 13 | 52 | 679 | 8 | 571 | 1.86e-100 | 323 |
| Msa0025320 | MtrunA17_Chr3g0082121 | 33.610 | 482 | 287 | 8 | 57 | 536 | 49 | 499 | 7.23e-86 | 287 |
| Msa0025320 | MtrunA17_Chr3g0082121 | 29.630 | 135 | 86 | 3 | 608 | 741 | 529 | 655 | 2.76e-12 | 70.5 |
| Msa0025320 | MtrunA17_Chr1g0202341 | 28.956 | 632 | 372 | 14 | 50 | 676 | 50 | 609 | 4.94e-81 | 274 |
| Msa0025320 | MtrunA17_Chr1g0203721 | 26.178 | 764 | 469 | 18 | 13 | 757 | 18 | 705 | 2.04e-76 | 266 |
| Msa0025320 | MtrunA17_Chr8g0363841 | 28.549 | 627 | 377 | 14 | 56 | 679 | 22 | 580 | 3.09e-76 | 261 |
| Msa0025320 | MtrunA17_Chr5g0448761 | 25.967 | 724 | 459 | 17 | 40 | 755 | 47 | 701 | 3.25e-71 | 249 |
| Msa0025320 | MtrunA17_Chr2g0296781 | 26.883 | 677 | 411 | 17 | 55 | 722 | 1 | 602 | 1.04e-70 | 247 |
| Msa0025320 | MtrunA17_Chr6g0458391 | 27.215 | 632 | 351 | 16 | 57 | 676 | 231 | 765 | 2.06e-66 | 236 |
| Msa0025320 | MtrunA17_Chr6g0477261 | 27.684 | 531 | 334 | 11 | 196 | 722 | 7 | 491 | 1.43e-64 | 228 |
| Msa0025320 | MtrunA17_Chr1g0164591 | 34.375 | 320 | 195 | 4 | 147 | 464 | 1 | 307 | 9.98e-63 | 214 |
| Msa0025320 | MtrunA17_Chr5g0441581 | 26.113 | 674 | 400 | 18 | 39 | 703 | 25 | 609 | 3.75e-62 | 222 |
| Msa0025320 | MtrunA17_Chr2g0287651 | 25.113 | 661 | 417 | 12 | 21 | 676 | 45 | 632 | 5.42e-59 | 216 |
| Msa0025320 | MtrunA17_Chr1g0207551 | 25.313 | 719 | 443 | 19 | 22 | 732 | 9 | 641 | 9.36e-57 | 209 |
| Msa0025320 | MtrunA17_Chr1g0172971 | 75.758 | 132 | 17 | 1 | 1 | 132 | 1 | 117 | 4.79e-56 | 202 |
| Msa0025320 | MtrunA17_Chr2g0329031 | 25.106 | 709 | 429 | 19 | 39 | 737 | 2 | 618 | 9.22e-56 | 205 |
| Msa0025320 | MtrunA17_Chr5g0440451 | 24.084 | 764 | 453 | 20 | 1 | 737 | 1 | 664 | 5.39e-55 | 205 |
| Msa0025320 | MtrunA17_Chr1g0198761 | 27.316 | 637 | 375 | 18 | 52 | 674 | 48 | 610 | 2.33e-54 | 201 |
| Msa0025320 | MtrunA17_Chr1g0196541 | 24.480 | 625 | 400 | 13 | 55 | 676 | 1 | 556 | 1.59e-53 | 198 |
| Msa0025320 | MtrunA17_Chr3g0080351 | 25.722 | 727 | 436 | 20 | 15 | 732 | 44 | 675 | 2.41e-53 | 199 |
| Msa0025320 | MtrunA17_Chr7g0258861 | 34.936 | 312 | 179 | 6 | 46 | 352 | 2 | 294 | 2.82e-53 | 187 |
| Msa0025320 | MtrunA17_Chr3g0118611 | 27.600 | 500 | 306 | 10 | 237 | 733 | 111 | 557 | 6.97e-53 | 197 |
| Msa0025320 | MtrunA17_Chr1g0203051 | 24.150 | 588 | 379 | 10 | 66 | 651 | 94 | 616 | 5.26e-51 | 189 |
| Msa0025320 | MtrunA17_Chr2g0276841 | 26.284 | 662 | 391 | 21 | 65 | 712 | 84 | 662 | 1.08e-48 | 184 |
| Msa0025320 | MtrunA17_Chr2g0287061 | 24.522 | 628 | 357 | 16 | 57 | 679 | 189 | 704 | 1.19e-47 | 182 |
| Msa0025320 | MtrunA17_Chr2g0290391 | 25.862 | 638 | 376 | 19 | 54 | 674 | 54 | 611 | 2.41e-46 | 177 |
| Msa0025320 | MtrunA17_Chr2g0291591 | 26.731 | 520 | 316 | 16 | 14 | 515 | 29 | 501 | 5.59e-44 | 167 |
| Msa0025320 | MtrunA17_Chr2g0291581 | 24.760 | 626 | 390 | 15 | 54 | 676 | 74 | 621 | 2.59e-42 | 164 |
| Msa0025320 | MtrunA17_Chr5g0448511 | 25.111 | 450 | 285 | 8 | 232 | 679 | 1 | 400 | 2.67e-42 | 162 |
| Msa0025320 | MtrunA17_Chr5g0431001 | 27.578 | 446 | 288 | 12 | 56 | 489 | 66 | 488 | 7.61e-42 | 160 |
| Msa0025320 | MtrunA17_Chr6g0475591 | 94.521 | 73 | 4 | 0 | 204 | 276 | 1 | 73 | 1.35e-41 | 146 |
| Msa0025320 | MtrunA17_Chr2g0294841 | 26.142 | 635 | 367 | 22 | 57 | 671 | 51 | 603 | 8.28e-39 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025320 | AT4G38180.1 | 26.887 | 636 | 389 | 15 | 50 | 679 | 72 | 637 | 6.97e-69 | 243 |
| Msa0025320 | AT4G15090.1 | 25.820 | 732 | 455 | 19 | 66 | 787 | 66 | 719 | 2.34e-60 | 220 |
| Msa0025320 | AT4G15090.5 | 25.820 | 732 | 455 | 19 | 66 | 787 | 66 | 719 | 2.34e-60 | 220 |
| Msa0025320 | AT4G15090.3 | 25.820 | 732 | 455 | 19 | 66 | 787 | 66 | 719 | 2.34e-60 | 220 |
| Msa0025320 | AT4G15090.2 | 25.820 | 732 | 455 | 19 | 66 | 787 | 66 | 719 | 2.34e-60 | 220 |
| Msa0025320 | AT4G15090.4 | 25.820 | 732 | 455 | 19 | 66 | 787 | 66 | 719 | 2.34e-60 | 220 |
| Msa0025320 | AT3G06250.2 | 25.000 | 640 | 363 | 16 | 39 | 675 | 178 | 703 | 9.84e-52 | 194 |
| Msa0025320 | AT3G06250.1 | 25.000 | 640 | 363 | 16 | 39 | 675 | 178 | 703 | 9.84e-52 | 194 |
| Msa0025320 | AT3G06250.3 | 25.000 | 640 | 363 | 16 | 39 | 675 | 178 | 703 | 9.84e-52 | 194 |
| Msa0025320 | AT3G22170.2 | 23.865 | 683 | 422 | 16 | 48 | 722 | 67 | 659 | 8.83e-51 | 192 |
| Msa0025320 | AT3G22170.1 | 23.865 | 683 | 422 | 16 | 48 | 722 | 67 | 659 | 8.83e-51 | 192 |
| Msa0025320 | AT1G76320.3 | 24.432 | 704 | 437 | 18 | 57 | 756 | 3 | 615 | 2.31e-50 | 188 |
| Msa0025320 | AT2G27110.3 | 24.830 | 588 | 383 | 13 | 229 | 811 | 36 | 569 | 3.57e-50 | 188 |
| Msa0025320 | AT1G76320.2 | 24.363 | 706 | 439 | 18 | 55 | 756 | 1 | 615 | 5.38e-50 | 188 |
| Msa0025320 | AT1G76320.1 | 24.363 | 706 | 439 | 18 | 55 | 756 | 1 | 615 | 5.44e-50 | 188 |
| Msa0025320 | AT1G76320.4 | 24.363 | 706 | 439 | 18 | 55 | 756 | 1 | 615 | 5.44e-50 | 188 |
| Msa0025320 | AT2G27110.2 | 24.830 | 588 | 383 | 13 | 229 | 811 | 181 | 714 | 1.00e-49 | 189 |
| Msa0025320 | AT2G27110.1 | 24.830 | 588 | 383 | 13 | 229 | 811 | 181 | 714 | 1.00e-49 | 189 |
| Msa0025320 | AT5G18960.2 | 23.613 | 703 | 415 | 19 | 37 | 733 | 197 | 783 | 1.14e-46 | 179 |
| Msa0025320 | AT5G18960.1 | 23.613 | 703 | 415 | 19 | 37 | 733 | 197 | 783 | 1.14e-46 | 179 |
| Msa0025320 | AT1G10240.2 | 25.201 | 623 | 372 | 21 | 65 | 673 | 62 | 604 | 2.24e-44 | 171 |
| Msa0025320 | AT1G10240.1 | 25.201 | 623 | 372 | 21 | 65 | 673 | 62 | 604 | 2.24e-44 | 171 |
| Msa0025320 | AT4G38170.1 | 23.944 | 497 | 299 | 14 | 251 | 733 | 24 | 455 | 1.61e-43 | 166 |
| Msa0025320 | AT1G80010.1 | 24.961 | 637 | 385 | 22 | 57 | 676 | 101 | 661 | 1.87e-41 | 162 |
| Msa0025320 | AT5G28530.1 | 24.804 | 637 | 384 | 19 | 56 | 674 | 60 | 619 | 4.03e-41 | 161 |
| Msa0025320 | AT2G32250.5 | 23.607 | 754 | 442 | 23 | 24 | 769 | 13 | 640 | 1.36e-40 | 160 |
| Msa0025320 | AT2G32250.2 | 23.607 | 754 | 442 | 23 | 24 | 769 | 13 | 640 | 1.68e-40 | 160 |
| Msa0025320 | AT2G32250.4 | 23.607 | 754 | 442 | 23 | 24 | 769 | 13 | 640 | 1.68e-40 | 160 |
| Msa0025320 | AT2G32250.6 | 23.607 | 754 | 442 | 23 | 24 | 769 | 13 | 640 | 1.88e-40 | 160 |
| Msa0025320 | AT2G32250.1 | 23.607 | 754 | 442 | 23 | 24 | 769 | 13 | 640 | 1.88e-40 | 160 |
| Msa0025320 | AT2G32250.3 | 23.607 | 754 | 442 | 23 | 24 | 769 | 13 | 640 | 1.88e-40 | 160 |
| Msa0025320 | AT5G28530.3 | 24.647 | 637 | 381 | 20 | 56 | 674 | 60 | 615 | 2.43e-40 | 159 |
| Msa0025320 | AT5G28530.2 | 24.647 | 637 | 381 | 20 | 56 | 674 | 60 | 615 | 2.43e-40 | 159 |
| Msa0025320 | AT2G32250.7 | 23.717 | 721 | 418 | 22 | 57 | 769 | 3 | 599 | 6.26e-40 | 158 |
| Msa0025320 | AT2G32250.8 | 23.717 | 721 | 418 | 22 | 57 | 769 | 3 | 599 | 6.36e-40 | 158 |
| Msa0025320 | AT1G52520.1 | 23.360 | 625 | 397 | 18 | 57 | 676 | 91 | 638 | 3.21e-35 | 143 |
| Msa0025320 | AT4G19990.5 | 24.439 | 446 | 288 | 9 | 57 | 499 | 27 | 426 | 1.20e-31 | 132 |
| Msa0025320 | AT4G19990.5 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.40e-11 | 67.0 |
| Msa0025320 | AT4G19990.3 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 1.27e-31 | 132 |
| Msa0025320 | AT4G19990.3 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.48e-11 | 67.0 |
| Msa0025320 | AT4G19990.4 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 1.27e-31 | 132 |
| Msa0025320 | AT4G19990.4 | 37.113 | 97 | 51 | 3 | 607 | 703 | 497 | 583 | 4.48e-11 | 67.0 |
| Msa0025320 | AT4G19990.7 | 24.439 | 446 | 288 | 9 | 57 | 499 | 41 | 440 | 1.65e-31 | 132 |
| Msa0025320 | AT4G19990.7 | 37.113 | 97 | 51 | 3 | 607 | 703 | 511 | 597 | 4.65e-11 | 67.0 |
| Msa0025320 | AT4G19990.6 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 2.01e-31 | 132 |
| Msa0025320 | AT4G19990.6 | 35.052 | 97 | 53 | 2 | 607 | 703 | 497 | 583 | 4.96e-11 | 67.0 |
| Msa0025320 | AT4G19990.2 | 24.664 | 446 | 287 | 10 | 57 | 499 | 27 | 426 | 2.01e-31 | 132 |
| Msa0025320 | AT4G19990.2 | 35.052 | 97 | 53 | 2 | 607 | 703 | 497 | 583 | 4.96e-11 | 67.0 |
| Msa0025320 | AT4G19990.1 | 29.104 | 268 | 183 | 4 | 235 | 499 | 106 | 369 | 7.18e-30 | 127 |
| Msa0025320 | AT4G19990.1 | 37.113 | 97 | 51 | 3 | 607 | 703 | 440 | 526 | 4.24e-11 | 67.0 |
| Msa0025320 | AT5G28530.4 | 24.451 | 364 | 210 | 12 | 317 | 674 | 252 | 556 | 6.80e-18 | 89.0 |
| Msa0025320 | AT5G28530.5 | 24.176 | 364 | 207 | 13 | 317 | 674 | 252 | 552 | 3.90e-17 | 86.3 |
Find 116 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 1_1:+48301540 | None:intergenic |
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 1_1:-48302950 | Msa0025320:intron |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 1_1:-48302402 | Msa0025320:CDS |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 1_1:+48302823 | None:intergenic |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 1_1:+48301546 | None:intergenic |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 1_1:+48304009 | None:intergenic |
| ATGTATTGATGATTATATTT+TGG | 0.303619 | 1_1:-48301303 | Msa0025320:three_prime_UTR |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | 1_1:+48302062 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 1_1:+48303818 | None:intergenic |
| GCCTTCGAATGTTGATGTTT+TGG | 0.322848 | 1_1:-48302111 | Msa0025320:CDS |
| CAACTAGATTATTCTCTATT+CGG | 0.323831 | 1_1:-48303502 | Msa0025320:CDS |
| TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 1_1:-48301942 | Msa0025320:CDS |
| GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 1_1:+48302546 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 1_1:+48303452 | None:intergenic |
| TTTAAGTCTGAAAACCAAAA+AGG | 0.346249 | 1_1:+48303691 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 1_1:+48302937 | None:intergenic |
| CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 1_1:-48301702 | Msa0025320:CDS |
| TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 1_1:+48301478 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 1_1:-48303445 | Msa0025320:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 1_1:-48303453 | Msa0025320:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 1_1:-48303743 | Msa0025320:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 1_1:+48301564 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 1_1:-48302228 | Msa0025320:CDS |
| GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 1_1:-48302577 | Msa0025320:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 1_1:-48301986 | Msa0025320:CDS |
| GTCTTATGAAGTTATGGGTC+AGG | 0.415385 | 1_1:-48303737 | Msa0025320:CDS |
| GAAGTTATGGGTCAGGGAGT+TGG | 0.426260 | 1_1:-48303730 | Msa0025320:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 1_1:-48304057 | Msa0025320:CDS |
| AAAACACCTGGAAAACTATT+CGG | 0.428349 | 1_1:+48302764 | None:intergenic |
| GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 1_1:-48301603 | Msa0025320:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 1_1:-48303805 | Msa0025320:CDS |
| TTGATATCGTTGTGCTTGAC+TGG | 0.433430 | 1_1:+48301794 | None:intergenic |
| GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 1_1:-48301669 | Msa0025320:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 1_1:+48304220 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 1_1:+48304219 | None:intergenic |
| TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 1_1:+48301572 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 1_1:-48303940 | Msa0025320:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 1_1:-48302528 | Msa0025320:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 1_1:-48303888 | Msa0025320:CDS |
| ACATCAACTTCATCTGATAG+TGG | 0.459514 | 1_1:-48304345 | Msa0025320:CDS |
| CTTGCTTTGCATTTATTCAC+AGG | 0.460007 | 1_1:-48302262 | Msa0025320:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 1_1:-48303775 | Msa0025320:CDS |
| GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 1_1:+48302308 | None:intergenic |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 1_1:+48303997 | None:intergenic |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 1_1:-48303742 | Msa0025320:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 1_1:-48304020 | Msa0025320:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 1_1:+48301885 | None:intergenic |
| GGCAGAAATTCCTTATCAAT+CGG | 0.471938 | 1_1:-48301488 | Msa0025320:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 1_1:-48302049 | Msa0025320:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 1_1:-48302529 | Msa0025320:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 1_1:+48302226 | None:intergenic |
| CTTTCTAAAGGTATTCGTAC+AGG | 0.486879 | 1_1:-48301657 | Msa0025320:CDS |
| GATCATGATCTTCAAAACTT+GGG | 0.487945 | 1_1:+48302063 | None:intergenic |
| CATTCTTTGAAGACAATACC+TGG | 0.489494 | 1_1:-48301903 | Msa0025320:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 1_1:-48302212 | Msa0025320:CDS |
| GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 1_1:+48301818 | None:intergenic |
| TTGAAGACTTAGATGGCGTC+GGG | 0.493598 | 1_1:+48301634 | None:intergenic |
| CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 1_1:-48301602 | Msa0025320:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 1_1:-48302388 | Msa0025320:CDS |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 1_1:-48304221 | Msa0025320:CDS |
| TGAATAAATGCAAAGCAAGA+AGG | 0.503349 | 1_1:+48302266 | None:intergenic |
| TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 1_1:+48301573 | None:intergenic |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 1_1:+48303946 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 1_1:-48303923 | Msa0025320:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 1_1:-48302369 | Msa0025320:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 1_1:-48304091 | Msa0025320:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 1_1:+48303835 | None:intergenic |
| GAATAAATGCAAAGCAAGAA+GGG | 0.521406 | 1_1:+48302267 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 1_1:+48304260 | None:intergenic |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 1_1:-48304153 | Msa0025320:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 1_1:-48304046 | Msa0025320:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 1_1:-48303881 | Msa0025320:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 1_1:+48302231 | None:intergenic |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 1_1:-48302738 | Msa0025320:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 1_1:+48303847 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 1_1:+48304221 | None:intergenic |
| ATTATGATAAAGCTAGAGAA+AGG | 0.537760 | 1_1:-48301509 | Msa0025320:CDS |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 1_1:+48304259 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 1_1:-48302211 | Msa0025320:CDS |
| AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 1_1:+48302425 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 1_1:-48304045 | Msa0025320:CDS |
| GTTATGGGTCAGGGAGTTGG+AGG | 0.547221 | 1_1:-48303727 | Msa0025320:CDS |
| AACACAATAACGCACTAGCC+TGG | 0.552106 | 1_1:+48302792 | None:intergenic |
| AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 1_1:-48301939 | Msa0025320:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 1_1:-48301985 | Msa0025320:CDS |
| GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 1_1:-48302574 | Msa0025320:CDS |
| TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 1_1:-48301618 | Msa0025320:CDS |
| GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 1_1:+48302307 | None:intergenic |
| TTTGAAGACTTAGATGGCGT+CGG | 0.575863 | 1_1:+48301633 | None:intergenic |
| ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 1_1:+48302064 | None:intergenic |
| ATGAAATCGACCGTCAATGT+TGG | 0.583819 | 1_1:-48301828 | Msa0025320:CDS |
| ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 1_1:-48302310 | Msa0025320:CDS |
| CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 1_1:-48302541 | Msa0025320:CDS |
| TATGATGATGCTGATAATGA+CGG | 0.599988 | 1_1:-48302134 | Msa0025320:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 1_1:-48303887 | Msa0025320:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 1_1:-48304300 | Msa0025320:CDS |
| TCCAAAACATCAACATTCGA+AGG | 0.607058 | 1_1:+48302110 | None:intergenic |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 1_1:-48302225 | Msa0025320:CDS |
| TCTTATGAAGTTATGGGTCA+GGG | 0.609153 | 1_1:-48303736 | Msa0025320:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 1_1:-48303998 | Msa0025320:CDS |
| ATGATGATGCTGATAATGAC+GGG | 0.620534 | 1_1:-48302133 | Msa0025320:CDS |
| TTCACAAACTCAATAACCTG+TGG | 0.626760 | 1_1:+48303982 | None:intergenic |
| TGAAGCTTTATCAGTGATTG+TGG | 0.633753 | 1_1:-48301445 | Msa0025320:CDS |
| TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 1_1:-48301601 | Msa0025320:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 1_1:-48302387 | Msa0025320:CDS |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 1_1:+48302812 | None:intergenic |
| GATTTCATCTTATCGACAGA+CGG | 0.652942 | 1_1:+48301843 | None:intergenic |
| GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 1_1:+48302568 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 1_1:-48301984 | Msa0025320:CDS |
| TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 1_1:+48302420 | None:intergenic |
| TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 1_1:+48301569 | None:intergenic |
| AATAAATGCAAAGCAAGAAG+GGG | 0.664515 | 1_1:+48302268 | None:intergenic |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 1_1:+48304261 | None:intergenic |
| AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 1_1:+48302572 | None:intergenic |
| AGGGGTGTACTTGTTTACAA+CGG | 0.695086 | 1_1:+48302286 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 1_1:-48302810 | Msa0025320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTGATATGATTTAT+TGG | - | chr1_1:48304301-48304320 | Msa0025320:CDS | 10.0% |
| !!! | TTTTGATGAGTTAAATAATT+TGG | - | chr1_1:48302988-48303007 | Msa0025320:intron | 15.0% |
| !!! | ATTGATTGTTTTTATAAGTT+TGG | - | chr1_1:48304241-48304260 | Msa0025320:CDS | 15.0% |
| !!! | TTTTATAAGTTTGGTTTTTT+AGG | - | chr1_1:48304250-48304269 | Msa0025320:CDS | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr1_1:48301483-48301502 | Msa0025320:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | - | chr1_1:48301769-48301788 | Msa0025320:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | - | chr1_1:48301770-48301789 | Msa0025320:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | + | chr1_1:48302083-48302102 | None:intergenic | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | - | chr1_1:48302273-48302292 | Msa0025320:CDS | 20.0% |
| !! | ACATACTTATTAGAATACTT+AGG | - | chr1_1:48302503-48302522 | Msa0025320:CDS | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | - | chr1_1:48302566-48302585 | Msa0025320:CDS | 20.0% |
| !!! | TATTGTATTTTGTTCTGATA+TGG | - | chr1_1:48302678-48302697 | Msa0025320:CDS | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | - | chr1_1:48303029-48303048 | Msa0025320:intron | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | - | chr1_1:48303030-48303049 | Msa0025320:intron | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | - | chr1_1:48303058-48303077 | Msa0025320:intron | 20.0% |
| !! | CTTATAAAAACAATCAATCA+GGG | + | chr1_1:48304239-48304258 | None:intergenic | 20.0% |
| !! | ACTTATAAAAACAATCAATC+AGG | + | chr1_1:48304240-48304259 | None:intergenic | 20.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | - | chr1_1:48301517-48301536 | Msa0025320:CDS | 25.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | - | chr1_1:48301566-48301585 | Msa0025320:CDS | 25.0% |
| ! | TTTAAGTCTGAAAACCAAAA+AGG | + | chr1_1:48301969-48301988 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr1_1:48302117-48302136 | Msa0025320:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | - | chr1_1:48302155-48302174 | Msa0025320:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr1_1:48302204-48302223 | Msa0025320:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | + | chr1_1:48302230-48302249 | None:intergenic | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | - | chr1_1:48302349-48302368 | Msa0025320:CDS | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | - | chr1_1:48302373-48302392 | Msa0025320:CDS | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | - | chr1_1:48302374-48302393 | Msa0025320:CDS | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | - | chr1_1:48302427-48302446 | Msa0025320:CDS | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | - | chr1_1:48302451-48302470 | Msa0025320:CDS | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr1_1:48302723-48302742 | None:intergenic | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | - | chr1_1:48303062-48303081 | Msa0025320:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr1_1:48303255-48303274 | Msa0025320:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr1_1:48303429-48303448 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr1_1:48303429-48303448 | Msa0025320:intron | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | + | chr1_1:48303476-48303495 | None:intergenic | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | - | chr1_1:48303489-48303508 | Msa0025320:CDS | 25.0% |
| !! | AGAAAAATTTTAGATGACTC+TGG | + | chr1_1:48303937-48303956 | None:intergenic | 25.0% |
| !!! | TCATCTAAAATTTTTCTCGA+CGG | - | chr1_1:48303940-48303959 | Msa0025320:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | + | chr1_1:48304114-48304133 | None:intergenic | 25.0% |
| ! | ATTATGATAAAGCTAGAGAA+AGG | - | chr1_1:48304148-48304167 | Msa0025320:CDS | 25.0% |
| TCCATGATTCTTTATTGCTA+GGG | + | chr1_1:48301440-48301459 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | + | chr1_1:48301441-48301460 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | - | chr1_1:48301504-48301523 | Msa0025320:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | chr1_1:48301600-48301619 | Msa0025320:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr1_1:48301611-48301630 | Msa0025320:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr1_1:48301612-48301631 | Msa0025320:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | - | chr1_1:48301637-48301656 | Msa0025320:CDS | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | - | chr1_1:48301776-48301795 | Msa0025320:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | + | chr1_1:48301842-48301861 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | - | chr1_1:48301882-48301901 | Msa0025320:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | - | chr1_1:48301915-48301934 | Msa0025320:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr1_1:48302208-48302227 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr1_1:48302212-48302231 | Msa0025320:CDS | 30.0% | |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | - | chr1_1:48302236-48302255 | Msa0025320:CDS | 30.0% |
| CTTACTTATTTGAACTACAC+GGG | - | chr1_1:48302350-48302369 | Msa0025320:CDS | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | + | chr1_1:48302381-48302400 | None:intergenic | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | + | chr1_1:48302415-48302434 | None:intergenic | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | - | chr1_1:48302707-48302726 | Msa0025320:CDS | 30.0% | |
| AAAACACCTGGAAAACTATT+CGG | + | chr1_1:48302896-48302915 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | - | chr1_1:48302944-48302963 | Msa0025320:intron | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | + | chr1_1:48303392-48303411 | None:intergenic | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | + | chr1_1:48303393-48303412 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | + | chr1_1:48303394-48303413 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr1_1:48303434-48303453 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr1_1:48303432-48303451 | Msa0025320:intron | 30.0% | |
| ! | TATGATGATGCTGATAATGA+CGG | - | chr1_1:48303523-48303542 | Msa0025320:CDS | 30.0% |
| ATCATGATCTTCAAAACTTG+GGG | + | chr1_1:48303596-48303615 | None:intergenic | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | + | chr1_1:48303597-48303616 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | - | chr1_1:48303608-48303627 | Msa0025320:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | - | chr1_1:48303776-48303795 | Msa0025320:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr1_1:48304096-48304115 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTCCGATTGATA+AGG | + | chr1_1:48304182-48304201 | None:intergenic | 30.0% |
| ACATCAACTTCATCTGATAG+TGG | - | chr1_1:48301312-48301331 | Msa0025320:three_prime_UTR | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | + | chr1_1:48301439-48301458 | None:intergenic | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | + | chr1_1:48301678-48301697 | None:intergenic | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | - | chr1_1:48301695-48301714 | Msa0025320:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | - | chr1_1:48301700-48301719 | Msa0025320:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | - | chr1_1:48301701-48301720 | Msa0025320:CDS | 35.0% | |
| ! | AGCTGGAATATATTTGAAGC+TGG | - | chr1_1:48301734-48301753 | Msa0025320:CDS | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | + | chr1_1:48301813-48301832 | None:intergenic | 35.0% |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr1_1:48301852-48301871 | Msa0025320:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | - | chr1_1:48301914-48301933 | Msa0025320:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+GGG | - | chr1_1:48301921-48301940 | Msa0025320:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | - | chr1_1:48302001-48302020 | Msa0025320:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | - | chr1_1:48302004-48302023 | Msa0025320:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | + | chr1_1:48302072-48302091 | None:intergenic | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | + | chr1_1:48302073-48302092 | None:intergenic | 35.0% | |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | - | chr1_1:48302125-48302144 | Msa0025320:CDS | 35.0% |
| TAAGACCTATAGTCAATCCT+AGG | + | chr1_1:48302334-48302353 | None:intergenic | 35.0% | |
| ! | ATTTAGTTTACGCATTGCTG+AGG | - | chr1_1:48302537-48302556 | Msa0025320:CDS | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | - | chr1_1:48302740-48302759 | Msa0025320:CDS | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | + | chr1_1:48302837-48302856 | None:intergenic | 35.0% | |
| ! | TCAATTCCGAATAGTTTTCC+AGG | - | chr1_1:48302887-48302906 | Msa0025320:CDS | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr1_1:48302899-48302918 | Msa0025320:CDS | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr1_1:48302900-48302919 | Msa0025320:CDS | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | - | chr1_1:48302912-48302931 | Msa0025320:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr1_1:48303199-48303218 | Msa0025320:intron | 35.0% |
| TAAAGAATCGAACAAGTGAG+TGG | + | chr1_1:48303240-48303259 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | - | chr1_1:48303269-48303288 | Msa0025320:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr1_1:48303270-48303289 | Msa0025320:intron | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | - | chr1_1:48303395-48303414 | Msa0025320:intron | 35.0% | |
| ! | ATGATGATGCTGATAATGAC+GGG | - | chr1_1:48303524-48303543 | Msa0025320:CDS | 35.0% |
| TCCAAAACATCAACATTCGA+AGG | + | chr1_1:48303550-48303569 | None:intergenic | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | + | chr1_1:48303598-48303617 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | - | chr1_1:48303672-48303691 | Msa0025320:CDS | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | - | chr1_1:48303705-48303724 | Msa0025320:CDS | 35.0% |
| TTGAAGATCTTGGAGTTCTT+AGG | - | chr1_1:48303715-48303734 | Msa0025320:CDS | 35.0% | |
| ! | CATTCTTTGAAGACAATACC+TGG | - | chr1_1:48303754-48303773 | Msa0025320:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | + | chr1_1:48303775-48303794 | None:intergenic | 35.0% |
| GATTTCATCTTATCGACAGA+CGG | + | chr1_1:48303817-48303836 | None:intergenic | 35.0% | |
| TGTTCTTGAAGCTGGAAAAA+AGG | - | chr1_1:48303963-48303982 | Msa0025320:CDS | 35.0% | |
| !! | CTTTCTAAAGGTATTCGTAC+AGG | - | chr1_1:48304000-48304019 | Msa0025320:CDS | 35.0% |
| !!! | GCTACTTTTGAAGACTTAGA+TGG | + | chr1_1:48304033-48304052 | None:intergenic | 35.0% |
| TCTTTCTTTGAACTTTGGTG+CGG | + | chr1_1:48304091-48304110 | None:intergenic | 35.0% | |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | + | chr1_1:48304120-48304139 | None:intergenic | 35.0% |
| GGCAGAAATTCCTTATCAAT+CGG | - | chr1_1:48304169-48304188 | Msa0025320:CDS | 35.0% | |
| ! | TGAAGCTTTATCAGTGATTG+TGG | - | chr1_1:48304212-48304231 | Msa0025320:CDS | 35.0% |
| TCAGCATGAATCATTGCTAG+GGG | + | chr1_1:48301399-48301418 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | + | chr1_1:48301400-48301419 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | + | chr1_1:48301401-48301420 | None:intergenic | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | - | chr1_1:48301436-48301455 | Msa0025320:CDS | 40.0% | |
| GTCTTATGAAGTTATGGGTC+AGG | - | chr1_1:48301920-48301939 | Msa0025320:CDS | 40.0% | |
| ! | GCACAGAGAATCTTCCTTTT+TGG | - | chr1_1:48301952-48301971 | Msa0025320:CDS | 40.0% |
| AACTGCCTAGGATTGACTAT+AGG | - | chr1_1:48302326-48302345 | Msa0025320:CDS | 40.0% | |
| ! | ATTTTCTCGCTTCTGCCATT+TGG | - | chr1_1:48302397-48302416 | Msa0025320:CDS | 40.0% |
| TCACACAAGACAAAATGCCT+AGG | + | chr1_1:48302471-48302490 | None:intergenic | 40.0% | |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | - | chr1_1:48302783-48302802 | Msa0025320:CDS | 40.0% |
| TGGTCTGTATAAATCGTCTG+TGG | + | chr1_1:48302848-48302867 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | - | chr1_1:48302847-48302866 | Msa0025320:CDS | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | + | chr1_1:48303114-48303133 | None:intergenic | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | - | chr1_1:48303116-48303135 | Msa0025320:intron | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr1_1:48303129-48303148 | Msa0025320:intron | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | - | chr1_1:48303151-48303170 | Msa0025320:intron | 40.0% |
| ! | AGGGGTGTACTTGTTTACAA+CGG | + | chr1_1:48303374-48303393 | None:intergenic | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr1_1:48303445-48303464 | Msa0025320:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr1_1:48303446-48303465 | Msa0025320:CDS | 40.0% | |
| ! | GCCTTCGAATGTTGATGTTT+TGG | - | chr1_1:48303546-48303565 | Msa0025320:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+AGG | - | chr1_1:48303671-48303690 | Msa0025320:CDS | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | - | chr1_1:48303673-48303692 | Msa0025320:CDS | 40.0% | |
| AAGATCTTGGAGTTCTTAGG+TGG | - | chr1_1:48303718-48303737 | Msa0025320:CDS | 40.0% | |
| ATGAAATCGACCGTCAATGT+TGG | - | chr1_1:48303829-48303848 | Msa0025320:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAC+TGG | + | chr1_1:48303866-48303885 | None:intergenic | 40.0% | |
| GAGGAGTTGCTTCTTTCTAA+AGG | - | chr1_1:48303988-48304007 | Msa0025320:CDS | 40.0% | |
| TTTGAAGACTTAGATGGCGT+CGG | + | chr1_1:48304027-48304046 | None:intergenic | 40.0% | |
| TCTTCAAAAGTAGCTGCTGT+TGG | - | chr1_1:48304039-48304058 | Msa0025320:CDS | 40.0% | |
| !! | TCACTGATTCATGCTGAGAG+TGG | - | chr1_1:48301357-48301376 | Msa0025320:three_prime_UTR | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | + | chr1_1:48301651-48301670 | None:intergenic | 45.0% |
| GAAAAACCTGAGGAAAGGGT+TGG | - | chr1_1:48301705-48301724 | Msa0025320:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | + | chr1_1:48301714-48301733 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr1_1:48301717-48301736 | Msa0025320:CDS | 45.0% |
| CTAAGGTAACACGAATGCTC+TGG | + | chr1_1:48301825-48301844 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | - | chr1_1:48302008-48302027 | Msa0025320:CDS | 45.0% |
| CAGTACATTCTGAACTGCCT+AGG | - | chr1_1:48302314-48302333 | Msa0025320:CDS | 45.0% | |
| AACACAATAACGCACTAGCC+TGG | + | chr1_1:48302868-48302887 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | + | chr1_1:48302908-48302927 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr1_1:48303128-48303147 | Msa0025320:intron | 45.0% |
| AATCGAACAAGTGAGTGGTC+TGG | + | chr1_1:48303235-48303254 | None:intergenic | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | - | chr1_1:48303288-48303307 | Msa0025320:intron | 45.0% | |
| GTCTTCAGTGCCAACATTGA+CGG | + | chr1_1:48303842-48303861 | None:intergenic | 45.0% | |
| TGAAGCTGGAAAAAAGGCAG+AGG | - | chr1_1:48303969-48303988 | Msa0025320:CDS | 45.0% | |
| TTGAAGACTTAGATGGCGTC+GGG | + | chr1_1:48304026-48304045 | None:intergenic | 45.0% | |
| ! | CTGTTGGTGAAACATCTGCT+GGG | - | chr1_1:48304055-48304074 | Msa0025320:CDS | 45.0% |
| ! | TGTTGGTGAAACATCTGCTG+GGG | - | chr1_1:48304056-48304075 | Msa0025320:CDS | 45.0% |
| ! | TCTTTGAACTTTGGTGCGGT+GGG | + | chr1_1:48304087-48304106 | None:intergenic | 45.0% |
| ! | TTCTTTGAACTTTGGTGCGG+TGG | + | chr1_1:48304088-48304107 | None:intergenic | 45.0% |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | + | chr1_1:48301663-48301682 | None:intergenic | 50.0% |
| GAAGTTATGGGTCAGGGAGT+TGG | - | chr1_1:48301927-48301946 | Msa0025320:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | - | chr1_1:48302919-48302938 | Msa0025320:CDS | 50.0% |
| GAAGGCCTACCTCAGACTTT+AGG | - | chr1_1:48303080-48303099 | Msa0025320:intron | 50.0% | |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | + | chr1_1:48303088-48303107 | None:intergenic | 50.0% |
| GACAAGCCACCTAAAGTCTG+AGG | + | chr1_1:48303092-48303111 | None:intergenic | 50.0% | |
| ATCCCAACAGTCAGCTGATG+CGG | - | chr1_1:48303347-48303366 | Msa0025320:intron | 50.0% | |
| ! | GCTGTTGGTGAAACATCTGC+TGG | - | chr1_1:48304054-48304073 | Msa0025320:CDS | 50.0% |
| GCCAACAACAGACAGTCCAC+AGG | - | chr1_1:48301659-48301678 | Msa0025320:CDS | 55.0% | |
| GTTATGGGTCAGGGAGTTGG+AGG | - | chr1_1:48301930-48301949 | Msa0025320:CDS | 55.0% | |
| GGCCTACCTCAGACTTTAGG+TGG | - | chr1_1:48303083-48303102 | Msa0025320:intron | 55.0% | |
| GACCGCATCAGCTGACTGTT+GGG | + | chr1_1:48303352-48303371 | None:intergenic | 55.0% | |
| CTCGACGGTGTTCTTGAAGC+TGG | - | chr1_1:48303955-48303974 | Msa0025320:CDS | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | + | chr1_1:48303353-48303372 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 48301303 | 48304376 | 48301303 | ID=Msa0025320;Name=Msa0025320 |
| chr1_1 | mRNA | 48301303 | 48304376 | 48301303 | ID=Msa0025320-mRNA-1;Parent=Msa0025320;Name=Msa0025320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|131|819 |
| chr1_1 | exon | 48301303 | 48302962 | 48301303 | ID=Msa0025320-mRNA-1:exon:13903;Parent=Msa0025320-mRNA-1 |
| chr1_1 | exon | 48303446 | 48304376 | 48303446 | ID=Msa0025320-mRNA-1:exon:13902;Parent=Msa0025320-mRNA-1 |
| chr1_1 | CDS | 48303446 | 48304376 | 48303446 | ID=Msa0025320-mRNA-1:cds;Parent=Msa0025320-mRNA-1 |
| chr1_1 | CDS | 48301434 | 48302962 | 48301434 | ID=Msa0025320-mRNA-1:cds;Parent=Msa0025320-mRNA-1 |
| chr1_1 | three_prime_UTR | 48301303 | 48301433 | 48301303 | ID=Msa0025320-mRNA-1:three_prime_utr;Parent=Msa0025320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
