Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026840 | sp|F4KCE9|KNL2_ARATH | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 8.10e-21 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0026840 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026840 | MtrunA17_Chr1g0182621 | 89.884 | 603 | 51 | 2 | 1 | 599 | 1 | 597 | 0.0 | 1077 |
| Msa0026840 | MtrunA17_Chr1g0182611 | 68.481 | 349 | 104 | 2 | 242 | 584 | 131 | 479 | 6.51e-152 | 446 |
| Msa0026840 | MtrunA17_Chr1g0182611 | 58.739 | 349 | 136 | 2 | 1 | 344 | 1 | 346 | 1.38e-131 | 394 |
| Msa0026840 | MtrunA17_Chr7g0231611 | 36.620 | 142 | 74 | 5 | 1 | 134 | 1 | 134 | 5.28e-15 | 76.6 |
| Msa0026840 | MtrunA17_Chr5g0416851 | 36.364 | 143 | 73 | 6 | 1 | 134 | 1 | 134 | 6.76e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026840 | AT5G02520.2 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 7.63e-22 | 100 |
| Msa0026840 | AT5G02520.2 | 45.205 | 73 | 39 | 1 | 528 | 599 | 519 | 591 | 5.15e-11 | 65.9 |
| Msa0026840 | AT5G02520.1 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 8.24e-22 | 100 |
| Msa0026840 | AT5G02520.1 | 45.205 | 73 | 39 | 1 | 528 | 599 | 518 | 590 | 5.33e-11 | 65.9 |
| Msa0026840 | AT5G02520.3 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 1.07e-21 | 99.8 |
| Msa0026840 | AT1G58210.1 | 39.130 | 92 | 52 | 1 | 24 | 115 | 64 | 151 | 4.44e-15 | 76.6 |
Find 163 sgRNAs with CRISPR-Local
Find 396 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCATCAGATAATATTTC+TGG | 0.175942 | 1_1:+50911637 | None:intergenic |
| TTACCATCAAATGATATTTC+TGG | 0.188236 | 1_1:+50912050 | None:intergenic |
| AATGGAGTCTTGCAATTCTC+TGG | 0.210078 | 1_1:+50912317 | None:intergenic |
| CAGTAGCAGGTTGCTTCTTC+TGG | 0.230387 | 1_1:+50911319 | None:intergenic |
| CAATTCTCTGGGGCCTCTTC+AGG | 0.246287 | 1_1:+50912329 | None:intergenic |
| CATACGCAGGCTGCTTCTTC+TGG | 0.254613 | 1_1:+50911764 | None:intergenic |
| TTCTACCTCCCTTAGAGTTT+TGG | 0.256165 | 1_1:-50910680 | Msa0026840:CDS |
| TCTTTATCTGGATGTGTTGC+AGG | 0.273995 | 1_1:+50911291 | None:intergenic |
| AGATTTGCTGGTACATTATC+AGG | 0.278683 | 1_1:+50912074 | None:intergenic |
| ATTGGAAAATTTACCAGATC+TGG | 0.281653 | 1_1:+50910930 | None:intergenic |
| TGATTCGGGCAATGCTGTTT+TGG | 0.283336 | 1_1:-50912541 | Msa0026840:CDS |
| GATATTTCTGGAAGATTTGC+TGG | 0.294734 | 1_1:+50912062 | None:intergenic |
| AAATTCTGTTCCTACCTCTT+TGG | 0.307585 | 1_1:-50911917 | Msa0026840:CDS |
| ATCTCAATCACACGTTTATA+AGG | 0.310005 | 1_1:-50908106 | Msa0026840:three_prime_UTR |
| TCACATACCATGTTATAAAT+AGG | 0.311211 | 1_1:+50910645 | None:intergenic |
| ACATATCTTGTTCATCTTCA+AGG | 0.335841 | 1_1:+50911869 | None:intergenic |
| CCGTGAGATTACAGAAATTC+AGG | 0.340294 | 1_1:-50910546 | Msa0026840:CDS |
| TTGATTGCGCCAAAACTCTA+AGG | 0.343897 | 1_1:+50910671 | None:intergenic |
| AGATTCGTTGATACATTATC+AGG | 0.360747 | 1_1:+50911661 | None:intergenic |
| GTAGAGCTCTGCTCTTTCTC+TGG | 0.362481 | 1_1:+50911724 | None:intergenic |
| CTTCCAGAAATATCATTTGA+TGG | 0.363684 | 1_1:-50912053 | Msa0026840:intron |
| GGAAGAGTAAACACAATGTC+TGG | 0.368000 | 1_1:-50911189 | Msa0026840:CDS |
| GCAGAGATCTGGTCTTTATC+TGG | 0.371673 | 1_1:+50911279 | None:intergenic |
| TGAGACTTTGCATTCATCTC+CGG | 0.373003 | 1_1:+50912292 | None:intergenic |
| GGTTGTGGAAAATCATGATT+TGG | 0.381883 | 1_1:-50911695 | Msa0026840:CDS |
| AATGATGAAGAGCCTCTAAA+AGG | 0.383621 | 1_1:+50910503 | None:intergenic |
| AGGGTTTAACATTATGTATC+CGG | 0.385989 | 1_1:+50911343 | None:intergenic |
| ATCAGAAACCGGTACTGATT+CGG | 0.388923 | 1_1:-50912556 | Msa0026840:CDS |
| TCAGAAACCGGTACTGATTC+GGG | 0.390167 | 1_1:-50912555 | Msa0026840:CDS |
| CCTTCTTCCGAACCTCAGTT+AGG | 0.412158 | 1_1:+50910333 | None:intergenic |
| AAACAGTGCACACTGGATAA+TGG | 0.412705 | 1_1:-50912781 | Msa0026840:CDS |
| GTTGATATTGCTTGTGGTAG+TGG | 0.415196 | 1_1:-50912254 | Msa0026840:CDS |
| ACTTTGCTTACATGTACATA+TGG | 0.422626 | 1_1:-50908152 | Msa0026840:three_prime_UTR |
| CAACTCTACATGGAGGAGAT+TGG | 0.430266 | 1_1:+50907729 | None:intergenic |
| ATGGAGTCTTGCAATTCTCT+GGG | 0.433444 | 1_1:+50912318 | None:intergenic |
| TCCTACTTCTTTGTTATCAC+CGG | 0.437184 | 1_1:-50911478 | Msa0026840:CDS |
| ATTCAGAGAAGAAGCGCTTC+GGG | 0.441350 | 1_1:-50912896 | Msa0026840:intron |
| TTTAGAGGCTCTTCATCATT+GGG | 0.442092 | 1_1:-50910500 | Msa0026840:CDS |
| GATCTCTGCCTCAGCAGCCT+TGG | 0.442994 | 1_1:-50911265 | Msa0026840:CDS |
| GACCATGGGAGATCGCAATA+AGG | 0.444355 | 1_1:-50911451 | Msa0026840:CDS |
| CAGAAGAAGCAACCTGCTAC+TGG | 0.444849 | 1_1:-50911318 | Msa0026840:CDS |
| GATTCAGAGAAGAAGCGCTT+CGG | 0.446396 | 1_1:-50912897 | Msa0026840:intron |
| GGCACTCCTCGAAGATGAAC+GGG | 0.449784 | 1_1:-50911430 | Msa0026840:CDS |
| TTATCAGGAACAACAGTAAC+CGG | 0.454689 | 1_1:+50912089 | None:intergenic |
| GTCAATGTTGTTCATGGTAG+TGG | 0.459300 | 1_1:-50911384 | Msa0026840:CDS |
| GCAGGTTGCTTCTTCTGGTA+GGG | 0.464478 | 1_1:+50911324 | None:intergenic |
| GAGACTTTGCATTCATCTCC+GGG | 0.467675 | 1_1:+50912293 | None:intergenic |
| CGATCTCCCATGGTCTTATC+CGG | 0.467896 | 1_1:+50911459 | None:intergenic |
| AGTGAGGTCAACGATATTCA+TGG | 0.467977 | 1_1:-50911835 | Msa0026840:CDS |
| GGTAGGGTCAATGTTGTTCA+TGG | 0.469284 | 1_1:-50911390 | Msa0026840:CDS |
| GACACCCGTTCAATCACAAA+AGG | 0.469932 | 1_1:-50911211 | Msa0026840:CDS |
| AGTTGGGCAGAGATAATTAC+GGG | 0.469980 | 1_1:+50910379 | None:intergenic |
| ACATATCCCGTTCATCTTCG+AGG | 0.471391 | 1_1:+50911424 | None:intergenic |
| TTGCATTCATCTCCGGGGAA+TGG | 0.473283 | 1_1:+50912299 | None:intergenic |
| ACGGCCTTTGAGGTAGAGCT+TGG | 0.476441 | 1_1:+50912125 | None:intergenic |
| CCTAACTGAGGTTCGGAAGA+AGG | 0.478942 | 1_1:-50910333 | Msa0026840:three_prime_UTR |
| GAGCTCTACCTTGAAGGTTG+TGG | 0.482477 | 1_1:-50911710 | Msa0026840:CDS |
| GAACGGTTACATTATACGAT+TGG | 0.482529 | 1_1:-50913401 | Msa0026840:CDS |
| AGGCTGCTGAGGCAGAGATC+TGG | 0.487795 | 1_1:+50911268 | None:intergenic |
| AGCAGGTTGCTTCTTCTGGT+AGG | 0.488235 | 1_1:+50911323 | None:intergenic |
| GTGTGAATGAATGCGATGTT+TGG | 0.488330 | 1_1:+50913495 | None:intergenic |
| CGCGATGTAGGATGCTGCTT+CGG | 0.500212 | 1_1:+50912176 | None:intergenic |
| TTCTTCTTGCTTCCAACGAA+CGG | 0.503942 | 1_1:-50913418 | Msa0026840:CDS |
| TCTTTCTCTGGATTCTTGAG+AGG | 0.504491 | 1_1:+50911736 | None:intergenic |
| AGAGCAGAGCTCTACCTTGA+AGG | 0.508453 | 1_1:-50911716 | Msa0026840:CDS |
| TAGTTGGGCAGAGATAATTA+CGG | 0.513506 | 1_1:+50910378 | None:intergenic |
| ACTAATACCTAACTGAGGTT+CGG | 0.516102 | 1_1:-50910340 | Msa0026840:three_prime_UTR |
| AGTCCTTAGTACTATGCAAC+CGG | 0.517646 | 1_1:+50911788 | None:intergenic |
| GGCCGTCGAAAATCATGATC+CGG | 0.520370 | 1_1:-50912108 | Msa0026840:CDS |
| GAGGCTCTTCATCATTGGGC+AGG | 0.522623 | 1_1:-50910496 | Msa0026840:CDS |
| TGCCTTATTGCGATCTCCCA+TGG | 0.525598 | 1_1:+50911449 | None:intergenic |
| CTGAGGTTCGGAAGAAGGGT+AGG | 0.525918 | 1_1:-50910328 | Msa0026840:three_prime_UTR |
| CAGAAGAAGCAGCCTGCGTA+TGG | 0.526168 | 1_1:-50911763 | Msa0026840:CDS |
| ACCGGCCACTACGTCTAGTC+CGG | 0.527410 | 1_1:+50911806 | None:intergenic |
| CGTATAATGTAACCGTTCGT+TGG | 0.528108 | 1_1:+50913406 | None:intergenic |
| GTCAACGATATTCATGGTAG+TGG | 0.532001 | 1_1:-50911829 | Msa0026840:CDS |
| AGCATTGCCCGAATCAGTAC+CGG | 0.533197 | 1_1:+50912548 | None:intergenic |
| CTAACTGAGGTTCGGAAGAA+GGG | 0.538261 | 1_1:-50910332 | Msa0026840:three_prime_UTR |
| AATGTCTTGATCAAATTAAG+AGG | 0.539750 | 1_1:-50908129 | Msa0026840:three_prime_UTR |
| CGGTTACATTATACGATTGG+TGG | 0.540059 | 1_1:-50913398 | Msa0026840:CDS |
| GGAAATGACTGATGGAGGAC+TGG | 0.545081 | 1_1:-50911244 | Msa0026840:CDS |
| GGGTTTAACATTATGTATCC+GGG | 0.545667 | 1_1:+50911344 | None:intergenic |
| TTGAGAGGACCTCGCGATGT+AGG | 0.547391 | 1_1:+50912164 | None:intergenic |
| TATCAAGGAACTTTCTCTGA+CGG | 0.548904 | 1_1:-50912501 | Msa0026840:intron |
| AGACGCCGGAGATGGCTAAA+CGG | 0.549320 | 1_1:+50913346 | None:intergenic |
| TCAGGCAATACCGACGAAGT+AGG | 0.550175 | 1_1:+50912347 | None:intergenic |
| GTTGAAGAGAAATAAGTCAG+AGG | 0.551672 | 1_1:+50913517 | None:intergenic |
| CCTGAATTTCTGTAATCTCA+CGG | 0.553835 | 1_1:+50910546 | None:intergenic |
| TGGCCGGTTGCATAGTACTA+AGG | 0.554205 | 1_1:-50911791 | Msa0026840:CDS |
| AAGTCTCAAAGAAGATGAGT+GGG | 0.555389 | 1_1:-50912277 | Msa0026840:CDS |
| GTTAGAGAACAATCAGAAAC+CGG | 0.557595 | 1_1:-50912567 | Msa0026840:CDS |
| AACCACCGTTTAGCCATCTC+CGG | 0.558688 | 1_1:-50913351 | Msa0026840:CDS |
| GTTGCAGGATCTCCAGTAGC+AGG | 0.559749 | 1_1:+50911306 | None:intergenic |
| GCAGCCTTGGAAATGACTGA+TGG | 0.560856 | 1_1:-50911252 | Msa0026840:CDS |
| TGTGGAAGAGACGCCGGAGA+TGG | 0.563212 | 1_1:+50913338 | None:intergenic |
| AGTAAACACAATGTCTGGGC+AGG | 0.565926 | 1_1:-50911184 | Msa0026840:CDS |
| TCCGGTGATAACAAAGAAGT+AGG | 0.566020 | 1_1:+50911477 | None:intergenic |
| CGGGATATGTCAATTAAGAC+GGG | 0.568225 | 1_1:-50911411 | Msa0026840:CDS |
| AGGCACTCCTCGAAGATGAA+CGG | 0.570389 | 1_1:-50911431 | Msa0026840:CDS |
| ACGGGATATGTCAATTAAGA+CGG | 0.571346 | 1_1:-50911412 | Msa0026840:CDS |
| AGAAGAAGAAGAAGGTGTGG+GGG | 0.572575 | 1_1:+50913437 | None:intergenic |
| ATATGTCAATTAAGACGGGT+AGG | 0.573298 | 1_1:-50911407 | Msa0026840:CDS |
| AATTGCAAGACTCCATTCCC+CGG | 0.573734 | 1_1:-50912311 | Msa0026840:CDS |
| CTGTAAAATCTCCTCAAGGA+AGG | 0.576048 | 1_1:-50911029 | Msa0026840:CDS |
| TCTTCATCTGAACGCTTGAG+AGG | 0.576282 | 1_1:+50912149 | None:intergenic |
| ACGATATTCATGGTAGTGGC+CGG | 0.576468 | 1_1:-50911825 | Msa0026840:CDS |
| AGTGGGGTTGATATTGCTTG+TGG | 0.577027 | 1_1:-50912260 | Msa0026840:CDS |
| GAATGTAAGTCACTCGAACA+AGG | 0.577107 | 1_1:-50911007 | Msa0026840:CDS |
| CAATACCGACGAAGTAGGAA+TGG | 0.577162 | 1_1:+50912352 | None:intergenic |
| GCTAATACATCAACTCTACA+TGG | 0.578484 | 1_1:+50907719 | None:intergenic |
| TGACTTACATTCCTTCCTTG+AGG | 0.583902 | 1_1:+50911018 | None:intergenic |
| ATGTTGTTCATGGTAGTGGC+GGG | 0.588592 | 1_1:-50911380 | Msa0026840:CDS |
| AGTCATTTCCAAGGCTGCTG+AGG | 0.594162 | 1_1:+50911257 | None:intergenic |
| GCGGGAATAGACGTAGTGCC+CGG | 0.594246 | 1_1:-50911362 | Msa0026840:CDS |
| GCAGAGATAATTACGGGCAG+AGG | 0.594505 | 1_1:+50910385 | None:intergenic |
| CTTCCAGAAATATTATCTGA+TGG | 0.594536 | 1_1:-50911640 | Msa0026840:intron |
| GAAGAGTAAACACAATGTCT+GGG | 0.597995 | 1_1:-50911188 | Msa0026840:CDS |
| CATTAATAAACAGTGCACAC+TGG | 0.598333 | 1_1:-50912788 | Msa0026840:CDS |
| ACACCCGTTCAATCACAAAA+GGG | 0.599424 | 1_1:-50911210 | Msa0026840:CDS |
| AGAGAAATAAGTCAGAGGAG+AGG | 0.599649 | 1_1:+50913522 | None:intergenic |
| TGAGGTTCGGAAGAAGGGTA+GGG | 0.599950 | 1_1:-50910327 | Msa0026840:intron |
| AATGTAAGTCACTCGAACAA+GGG | 0.601122 | 1_1:-50911006 | Msa0026840:CDS |
| TCCTCCATCAGTCATTTCCA+AGG | 0.602323 | 1_1:+50911248 | None:intergenic |
| AATGTTGTTCATGGTAGTGG+CGG | 0.603017 | 1_1:-50911381 | Msa0026840:CDS |
| TGATTGCGCCAAAACTCTAA+GGG | 0.604798 | 1_1:+50910672 | None:intergenic |
| GTTATCACCGGATAAGACCA+TGG | 0.605592 | 1_1:-50911466 | Msa0026840:CDS |
| GCCTTGGAAATGACTGATGG+AGG | 0.606817 | 1_1:-50911249 | Msa0026840:CDS |
| GTTTCCCTTGAGACTGTCGA+TGG | 0.607459 | 1_1:-50912835 | Msa0026840:CDS |
| ATATACCATCGACAGTCTCA+AGG | 0.611734 | 1_1:+50912830 | None:intergenic |
| GCAATCTCTCGTGACCAAAG+AGG | 0.613351 | 1_1:+50911903 | None:intergenic |
| AAAGTCCATTCCTACTTCGT+CGG | 0.616794 | 1_1:-50912357 | Msa0026840:CDS |
| AGAGCCAAGCTCTACCTCAA+AGG | 0.621891 | 1_1:-50912129 | Msa0026840:CDS |
| AAAGTCTCAAAGAAGATGAG+TGG | 0.624361 | 1_1:-50912278 | Msa0026840:CDS |
| TATGTCAATTAAGACGGGTA+GGG | 0.624553 | 1_1:-50911406 | Msa0026840:CDS |
| TTATCACCGGATAAGACCAT+GGG | 0.624895 | 1_1:-50911465 | Msa0026840:CDS |
| TTACTTTGTGGAAGAGACGC+CGG | 0.624985 | 1_1:+50913332 | None:intergenic |
| TATTATCAAAAGATATGATG+AGG | 0.626070 | 1_1:-50912857 | Msa0026840:CDS |
| TCTTCTGTAAAATCTCCTCA+AGG | 0.626237 | 1_1:-50911033 | Msa0026840:CDS |
| TTCGTCGGTATTGCCTGAAG+AGG | 0.626897 | 1_1:-50912342 | Msa0026840:CDS |
| TATACCATCGACAGTCTCAA+GGG | 0.636705 | 1_1:+50912831 | None:intergenic |
| CAATGACTCTGGAGAAACTG+TGG | 0.637102 | 1_1:+50910966 | None:intergenic |
| TGGCTCGTTAAATCATCTCA+AGG | 0.637214 | 1_1:-50913378 | Msa0026840:CDS |
| TTGAGAGGATCTCCATACGC+AGG | 0.638184 | 1_1:+50911751 | None:intergenic |
| GCCGGACTAGACGTAGTGGC+CGG | 0.638720 | 1_1:-50911807 | Msa0026840:CDS |
| TCAACAACCTATTTATAACA+TGG | 0.640146 | 1_1:-50910652 | Msa0026840:intron |
| GAGATTACAGAAATTCAGGA+AGG | 0.641599 | 1_1:-50910542 | Msa0026840:CDS |
| GGCGACAATTGAAACAGAAG+CGG | 0.644820 | 1_1:-50911088 | Msa0026840:CDS |
| AGAGGTAATTACACAAAACA+AGG | 0.648388 | 1_1:+50910403 | None:intergenic |
| AAGCAGCATCCTACATCGCG+AGG | 0.650638 | 1_1:-50912173 | Msa0026840:CDS |
| TGGAGTCTTGCAATTCTCTG+GGG | 0.655923 | 1_1:+50912319 | None:intergenic |
| CATCGCATTCATTCACACAA+TGG | 0.658461 | 1_1:-50913490 | Msa0026840:exon |
| TCTCTCGTGACCAAAGAGGT+AGG | 0.664826 | 1_1:+50911907 | None:intergenic |
| TATGTCAATTAAGATGAGTG+AGG | 0.667369 | 1_1:-50911851 | Msa0026840:CDS |
| GACTTTAATAGTATGCAACC+TGG | 0.671697 | 1_1:+50912214 | None:intergenic |
| CGCCGGAGATGGCTAAACGG+TGG | 0.689679 | 1_1:+50913349 | None:intergenic |
| AGACTTTGCATTCATCTCCG+GGG | 0.700085 | 1_1:+50912294 | None:intergenic |
| TTGCGCCAAAACTCTAAGGG+AGG | 0.703796 | 1_1:+50910675 | None:intergenic |
| TTCTCACTAATACCTAACTG+AGG | 0.705745 | 1_1:-50910345 | Msa0026840:three_prime_UTR |
| TGATACATTATCAGGAACAG+CGG | 0.709990 | 1_1:+50911669 | None:intergenic |
| AGTGGCCGGACTAGACGTAG+TGG | 0.713698 | 1_1:-50911811 | Msa0026840:CDS |
| GGGGTGCAATTAGAAGAACT+GGG | 0.727442 | 1_1:+50913456 | None:intergenic |
| AATACATCAACTCTACATGG+AGG | 0.744153 | 1_1:+50907722 | None:intergenic |
| AGTCTCAAAGAAGATGAGTG+GGG | 0.750570 | 1_1:-50912276 | Msa0026840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAAAAAAAAAATCTAA+AGG | + | chr1_1:50911062-50911081 | None:intergenic | 10.0% |
| !!! | AAAATTTATTCTTTTTTTAG+AGG | - | chr1_1:50911874-50911893 | Msa0026840:CDS | 10.0% |
| !!! | TTGAATTTTCAATTTTTTAT+TGG | - | chr1_1:50912036-50912055 | Msa0026840:intron | 10.0% |
| !!! | ATACTTTTTGTTAATTTCAT+CGG | - | chr1_1:50908177-50908196 | Msa0026840:intron | 15.0% |
| !!! | ATTTTCAAGAGTTTTTTATT+TGG | - | chr1_1:50908678-50908697 | Msa0026840:intron | 15.0% |
| !!! | TTTTTTCTTATAACATCTTT+TGG | + | chr1_1:50910195-50910214 | None:intergenic | 15.0% |
| !! | AAAGATGTTATAAGAAAAAA+AGG | - | chr1_1:50910195-50910214 | Msa0026840:intron | 15.0% |
| !! | AAGATGTTATAAGAAAAAAA+GGG | - | chr1_1:50910196-50910215 | Msa0026840:intron | 15.0% |
| !!! | TTTCTTTATGTTATTTTTGA+AGG | - | chr1_1:50911024-50911043 | Msa0026840:CDS | 15.0% |
| !!! | TTGTTAGTTATTTTACTATT+TGG | - | chr1_1:50911715-50911734 | Msa0026840:CDS | 15.0% |
| !!! | ATTTTACACATTACATTAAA+TGG | - | chr1_1:50912151-50912170 | Msa0026840:CDS | 15.0% |
| !! | AAACAAAACAAAAAATCAAA+AGG | + | chr1_1:50912367-50912386 | None:intergenic | 15.0% |
| !!! | ATGATTTGTTGTTTTTTATT+AGG | - | chr1_1:50912965-50912984 | Msa0026840:intron | 15.0% |
| !!! | TTAATTTTATTCATATGCAT+CGG | - | chr1_1:50913397-50913416 | Msa0026840:CDS | 15.0% |
| !! | ATATAAAATACTTAAATCTC+AGG | + | chr1_1:50913446-50913465 | None:intergenic | 15.0% |
| !! | ATAAATAAATTATTCACTCT+TGG | + | chr1_1:50913508-50913527 | None:intergenic | 15.0% |
| !!! | TATTTTTTGGTACAATTTAT+AGG | - | chr1_1:50913525-50913544 | Msa0026840:five_prime_UTR | 15.0% |
| !!! | TTTTTTTTTCTTAGATGAAG+TGG | - | chr1_1:50907722-50907741 | Msa0026840:three_prime_UTR | 20.0% |
| !!! | TTTTTTTTCTTAGATGAAGT+GGG | - | chr1_1:50907723-50907742 | Msa0026840:three_prime_UTR | 20.0% |
| !! | GTTAACACTAAACTATAAAT+TGG | - | chr1_1:50908238-50908257 | Msa0026840:intron | 20.0% |
| !! | AATATAAAAAACAGTTACTG+TGG | - | chr1_1:50908350-50908369 | Msa0026840:intron | 20.0% |
| !!! | TCATCATATCTTTTGATAAT+AGG | + | chr1_1:50908449-50908468 | None:intergenic | 20.0% |
| !! | TATTATCAAAAGATATGATG+AGG | - | chr1_1:50908448-50908467 | Msa0026840:intron | 20.0% |
| !!! | ATGGTATATATGTTTTGATT+AGG | - | chr1_1:50908489-50908508 | Msa0026840:intron | 20.0% |
| !!! | TGGTATATATGTTTTGATTA+GGG | - | chr1_1:50908490-50908509 | Msa0026840:intron | 20.0% |
| !! | AAAAAAACAAAAATCCATCA+GGG | + | chr1_1:50908640-50908659 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTCTTCTATTTCA+TGG | - | chr1_1:50908651-50908670 | Msa0026840:intron | 20.0% |
| !!! | AATGAATTTGCATTTTATCA+AGG | - | chr1_1:50908789-50908808 | Msa0026840:intron | 20.0% |
| !!! | GTTTTATTAATTTTTGTAGC+AGG | - | chr1_1:50908919-50908938 | Msa0026840:intron | 20.0% |
| !!! | GGTTTAATAATTTTTCTCTT+AGG | + | chr1_1:50910248-50910267 | None:intergenic | 20.0% |
| !! | TTGTAAAAAAGAACAATGAT+TGG | + | chr1_1:50910396-50910415 | None:intergenic | 20.0% |
| !! | GAGTGTATATATTATCAATT+AGG | + | chr1_1:50910463-50910482 | None:intergenic | 20.0% |
| !! | TTTACTCTATTCTTTATGTT+TGG | - | chr1_1:50910581-50910600 | Msa0026840:intron | 20.0% |
| !! | TTACTCTATTCTTTATGTTT+GGG | - | chr1_1:50910582-50910601 | Msa0026840:intron | 20.0% |
| !!! | GAGAATTTTTTAAGTTAGTT+GGG | + | chr1_1:50910945-50910964 | None:intergenic | 20.0% |
| !!! | TGAGAATTTTTTAAGTTAGT+TGG | + | chr1_1:50910946-50910965 | None:intergenic | 20.0% |
| !! | AAAAAAAAATCTAAAGGAAC+TGG | + | chr1_1:50911056-50911075 | None:intergenic | 20.0% |
| !! | TGGTAATAGTAATTGTTTAT+TGG | - | chr1_1:50911111-50911130 | Msa0026840:CDS | 20.0% |
| !! | GGTAATAGTAATTGTTTATT+GGG | - | chr1_1:50911112-50911131 | Msa0026840:CDS | 20.0% |
| !! | CTATTCCAAAGATTAAATAA+TGG | + | chr1_1:50911180-50911199 | None:intergenic | 20.0% |
| !!! | AATAGATGATCTTCTAATTT+TGG | - | chr1_1:50911195-50911214 | Msa0026840:CDS | 20.0% |
| !!! | CAGATTAGATAAATGTATTT+TGG | - | chr1_1:50912490-50912509 | Msa0026840:intron | 20.0% |
| !! | TAACGATAAATTTCATTGAT+AGG | + | chr1_1:50912534-50912553 | None:intergenic | 20.0% |
| !! | ATTGTAATATCAATAACAGA+GGG | + | chr1_1:50912745-50912764 | None:intergenic | 20.0% |
| !! | AATTGTAATATCAATAACAG+AGG | + | chr1_1:50912746-50912765 | None:intergenic | 20.0% |
| !! | CATATTCAATGATGTAATAA+AGG | + | chr1_1:50913293-50913312 | None:intergenic | 20.0% |
| ! | TTCTGATTCAACAAGATTAT+TGG | + | chr1_1:50908063-50908082 | None:intergenic | 25.0% |
| ! | AATCTTGTTGAATCAGAAAT+TGG | - | chr1_1:50908065-50908084 | Msa0026840:three_prime_UTR | 25.0% |
| !!! | AGTATTAAGTATTGAAAGTC+AGG | + | chr1_1:50908162-50908181 | None:intergenic | 25.0% |
| !!! | ATCGGTTTTGAATTTATGTT+TGG | - | chr1_1:50908195-50908214 | Msa0026840:intron | 25.0% |
| !!! | ATATCTTTTGATAATAGGAG+CGG | + | chr1_1:50908444-50908463 | None:intergenic | 25.0% |
| !!! | GGTATATATGTTTTGATTAG+GGG | - | chr1_1:50908491-50908510 | Msa0026840:intron | 25.0% |
| !! | TCATAAGTGTCAAATGTTTT+TGG | - | chr1_1:50908568-50908587 | Msa0026840:intron | 25.0% |
| !! | TTGCAAGATATTGTTGATAA+TGG | - | chr1_1:50908600-50908619 | Msa0026840:intron | 25.0% |
| ! | AAAAAACAAAAATCCATCAG+GGG | + | chr1_1:50908639-50908658 | None:intergenic | 25.0% |
| ! | GAAAAAAACAAAAATCCATC+AGG | + | chr1_1:50908641-50908660 | None:intergenic | 25.0% |
| ! | TTACCATCAAATGATATTTC+TGG | + | chr1_1:50909258-50909277 | None:intergenic | 25.0% |
| ! | TTACCATCAGATAATATTTC+TGG | + | chr1_1:50909671-50909690 | None:intergenic | 25.0% |
| ! | TATTAAGATATAGAGACTGT+AGG | + | chr1_1:50909773-50909792 | None:intergenic | 25.0% |
| ! | CTTCATGAATAAACAATGAT+TGG | + | chr1_1:50910425-50910444 | None:intergenic | 25.0% |
| ! | AAAAATGCTAACAATAGCAT+TGG | + | chr1_1:50910533-50910552 | None:intergenic | 25.0% |
| !! | ATTGTTAGCATTTTTGTACA+TGG | - | chr1_1:50910538-50910557 | Msa0026840:CDS | 25.0% |
| !!! | TTATGTTTGGGTTATTTTGT+AGG | - | chr1_1:50910594-50910613 | Msa0026840:intron | 25.0% |
| ! | TCAACAACCTATTTATAACA+TGG | - | chr1_1:50910653-50910672 | Msa0026840:CDS | 25.0% |
| ! | TCACATACCATGTTATAAAT+AGG | + | chr1_1:50910663-50910682 | None:intergenic | 25.0% |
| ! | AGAAACATTCTAAATAAGCT+GGG | + | chr1_1:50911009-50911028 | None:intergenic | 25.0% |
| ! | AAGAAACATTCTAAATAAGC+TGG | + | chr1_1:50911010-50911029 | None:intergenic | 25.0% |
| !! | TTTGTTATGGTTATTGCTAT+TGG | - | chr1_1:50911091-50911110 | Msa0026840:CDS | 25.0% |
| !!! | TCTAATTTTGGAATGATACT+TGG | - | chr1_1:50911207-50911226 | Msa0026840:CDS | 25.0% |
| ! | GACAATTACTATTCTAACAT+TGG | + | chr1_1:50911371-50911390 | None:intergenic | 25.0% |
| ! | GTGTAAAATTTAGAAATCCA+GGG | + | chr1_1:50911567-50911586 | None:intergenic | 25.0% |
| !!! | TAACTTGTTAATTTACACCT+CGG | - | chr1_1:50912177-50912196 | Msa0026840:CDS | 25.0% |
| ! | CAAAACAAAAAATCAAAAGG+AGG | + | chr1_1:50912364-50912383 | None:intergenic | 25.0% |
| !!! | CTAAATTTTTGGGATTCAAA+AGG | + | chr1_1:50912401-50912420 | None:intergenic | 25.0% |
| !! | AGACGGAAAACTAAATTTTT+GGG | + | chr1_1:50912411-50912430 | None:intergenic | 25.0% |
| ! | GGAGAAGAAAAAAAGATTTA+AGG | + | chr1_1:50912712-50912731 | None:intergenic | 25.0% |
| ! | AAAGCGAATTGAAATTAACA+CGG | + | chr1_1:50912842-50912861 | None:intergenic | 25.0% |
| !!! | CTTTGAACTGTTTTTTAACT+TGG | - | chr1_1:50912876-50912895 | Msa0026840:CDS | 25.0% |
| ! | ATGCTTCATAATAATGAAGT+TGG | - | chr1_1:50912934-50912953 | Msa0026840:intron | 25.0% |
| ! | AATGTCTTGATCAAATTAAG+AGG | - | chr1_1:50913176-50913195 | Msa0026840:intron | 25.0% |
| ! | ATGAATAAAATTAACTCGTG+AGG | + | chr1_1:50913391-50913410 | None:intergenic | 25.0% |
| GTTACTTGAGTTAATCGTAT+AGG | - | chr1_1:50908089-50908108 | Msa0026840:three_prime_UTR | 30.0% | |
| !! | AAGTATTGAAAGTCAGGTTT+GGG | + | chr1_1:50908156-50908175 | None:intergenic | 30.0% |
| !! | TAAGTATTGAAAGTCAGGTT+TGG | + | chr1_1:50908157-50908176 | None:intergenic | 30.0% |
| ACACTTATGAATACAAACCT+GGG | + | chr1_1:50908558-50908577 | None:intergenic | 30.0% | |
| !!! | TAAGTGTCAAATGTTTTTGG+TGG | - | chr1_1:50908571-50908590 | Msa0026840:intron | 30.0% |
| !!! | TATTTGGCTTTTCTGAAAAC+TGG | - | chr1_1:50908694-50908713 | Msa0026840:intron | 30.0% |
| !!! | ATTTGGCTTTTCTGAAAACT+GGG | - | chr1_1:50908695-50908714 | Msa0026840:intron | 30.0% |
| GACGGTAAATATTTCGATAA+TGG | - | chr1_1:50908822-50908841 | Msa0026840:intron | 30.0% | |
| ! | ATTAATTTTTGTAGCAGGTG+AGG | - | chr1_1:50908924-50908943 | Msa0026840:intron | 30.0% |
| CTTCCAGAAATATCATTTGA+TGG | - | chr1_1:50909252-50909271 | Msa0026840:intron | 30.0% | |
| TACTAAGATATAGAGACTGT+AGG | + | chr1_1:50909343-50909362 | None:intergenic | 30.0% | |
| ACATATCTTGTTCATCTTCA+AGG | + | chr1_1:50909439-50909458 | None:intergenic | 30.0% | |
| TATGTCAATTAAGATGAGTG+AGG | - | chr1_1:50909454-50909473 | Msa0026840:intron | 30.0% | |
| AGATTCGTTGATACATTATC+AGG | + | chr1_1:50909647-50909666 | None:intergenic | 30.0% | |
| CTTCCAGAAATATTATCTGA+TGG | - | chr1_1:50909665-50909684 | Msa0026840:intron | 30.0% | |
| AGGGTTTAACATTATGTATC+CGG | + | chr1_1:50909965-50909984 | None:intergenic | 30.0% | |
| !!! | TGAAAAGGTTTTGGAAATTC+TGG | + | chr1_1:50910165-50910184 | None:intergenic | 30.0% |
| !!! | TCTTTTGGTTTTTGCTGAAA+AGG | + | chr1_1:50910180-50910199 | None:intergenic | 30.0% |
| ATTGGAAAATTTACCAGATC+TGG | + | chr1_1:50910378-50910397 | None:intergenic | 30.0% | |
| TAGATTGTAAATCTTCCAGT+AGG | + | chr1_1:50910698-50910717 | None:intergenic | 30.0% | |
| !!! | TCTTTGAAATCACCTTTTAG+AGG | - | chr1_1:50910790-50910809 | Msa0026840:intron | 30.0% |
| AGAGGTAATTACACAAAACA+AGG | + | chr1_1:50910905-50910924 | None:intergenic | 30.0% | |
| GAAACATTCTAAATAAGCTG+GGG | + | chr1_1:50911008-50911027 | None:intergenic | 30.0% | |
| !! | CTATTTGATCAGCTTTGTTA+TGG | - | chr1_1:50911078-50911097 | Msa0026840:CDS | 30.0% |
| TTATTGGGAAATGTTTAAGC+TGG | - | chr1_1:50911127-50911146 | Msa0026840:CDS | 30.0% | |
| ! | CAAAGATTAAATAATGGAGC+CGG | + | chr1_1:50911174-50911193 | None:intergenic | 30.0% |
| TACAAGTACAACAGCAAAAT+CGG | + | chr1_1:50911256-50911275 | None:intergenic | 30.0% | |
| !!! | AGTTGTATTTTGAAACATGC+CGG | - | chr1_1:50911318-50911337 | Msa0026840:CDS | 30.0% |
| TACTATTCTAACATTGGACT+TGG | + | chr1_1:50911365-50911384 | None:intergenic | 30.0% | |
| ! | CAATTAACTGGCTTCAATAT+TGG | - | chr1_1:50911446-50911465 | Msa0026840:CDS | 30.0% |
| GGTGTAAAATTTAGAAATCC+AGG | + | chr1_1:50911568-50911587 | None:intergenic | 30.0% | |
| CACCAATTATACTACTGTTA+TGG | - | chr1_1:50911584-50911603 | Msa0026840:intron | 30.0% | |
| AGCCATAACAGTAGTATAAT+TGG | + | chr1_1:50911589-50911608 | None:intergenic | 30.0% | |
| AAGCCAAAAACACATAAAGA+TGG | - | chr1_1:50911759-50911778 | Msa0026840:CDS | 30.0% | |
| AGCCAAAAACACATAAAGAT+GGG | - | chr1_1:50911760-50911779 | Msa0026840:CDS | 30.0% | |
| AATGTGTTTGACTAGTGTAA+TGG | + | chr1_1:50911806-50911825 | None:intergenic | 30.0% | |
| !!! | AATTTTTGGGATTCAAAAGG+AGG | + | chr1_1:50912398-50912417 | None:intergenic | 30.0% |
| ! | CAGACGGAAAACTAAATTTT+TGG | + | chr1_1:50912412-50912431 | None:intergenic | 30.0% |
| GAAAAGAAAACAAAGACAGA+TGG | + | chr1_1:50912575-50912594 | None:intergenic | 30.0% | |
| TTGTCGAAACAACATAGAAT+TGG | + | chr1_1:50912609-50912628 | None:intergenic | 30.0% | |
| !!! | TGTTTTTTAACTTGGCTATG+AGG | - | chr1_1:50912884-50912903 | Msa0026840:CDS | 30.0% |
| ACCTACATAACACAACAATT+TGG | - | chr1_1:50913032-50913051 | Msa0026840:intron | 30.0% | |
| TCCAAATTGTTGTGTTATGT+AGG | + | chr1_1:50913036-50913055 | None:intergenic | 30.0% | |
| ! | TGTATATCTCACTGATCTTT+TGG | - | chr1_1:50913097-50913116 | Msa0026840:intron | 30.0% |
| ACTTTGCTTACATGTACATA+TGG | - | chr1_1:50913153-50913172 | Msa0026840:intron | 30.0% | |
| ATCTCAATCACACGTTTATA+AGG | - | chr1_1:50913199-50913218 | Msa0026840:intron | 30.0% | |
| ! | AAAGCATCATTCTTCATGAA+AGG | - | chr1_1:50913341-50913360 | Msa0026840:CDS | 30.0% |
| AATACTTAAATCTCAGGTGA+GGG | + | chr1_1:50913440-50913459 | None:intergenic | 30.0% | |
| AAATACTTAAATCTCAGGTG+AGG | + | chr1_1:50913441-50913460 | None:intergenic | 30.0% | |
| GTTGAAGAGAAATAAGTCAG+AGG | + | chr1_1:50907791-50907810 | None:intergenic | 35.0% | |
| AAGCAAGAAGAAGAAGAAGA+AGG | + | chr1_1:50907879-50907898 | None:intergenic | 35.0% | |
| GAACGGTTACATTATACGAT+TGG | - | chr1_1:50907904-50907923 | Msa0026840:intron | 35.0% | |
| TGACGAGAATACTTACTTTG+TGG | + | chr1_1:50907988-50908007 | None:intergenic | 35.0% | |
| GCTTTACTAGAAACAATGTC+AGG | - | chr1_1:50908122-50908141 | Msa0026840:three_prime_UTR | 35.0% | |
| ! | TCAAGCTAATGCAAAAGCAT+AGG | - | chr1_1:50908283-50908302 | Msa0026840:intron | 35.0% |
| CATTAATAAACAGTGCACAC+TGG | - | chr1_1:50908517-50908536 | Msa0026840:intron | 35.0% | |
| CACTTATGAATACAAACCTG+GGG | + | chr1_1:50908557-50908576 | None:intergenic | 35.0% | |
| GACACTTATGAATACAAACC+TGG | + | chr1_1:50908559-50908578 | None:intergenic | 35.0% | |
| GTTAGAGAACAATCAGAAAC+CGG | - | chr1_1:50908738-50908757 | Msa0026840:intron | 35.0% | |
| TATCAAGGAACTTTCTCTGA+CGG | - | chr1_1:50908804-50908823 | Msa0026840:intron | 35.0% | |
| AAAGTCTCAAAGAAGATGAG+TGG | - | chr1_1:50909027-50909046 | Msa0026840:intron | 35.0% | |
| AAGTCTCAAAGAAGATGAGT+GGG | - | chr1_1:50909028-50909047 | Msa0026840:intron | 35.0% | |
| GTAAAAATAGACGTAGTACC+AGG | - | chr1_1:50909073-50909092 | Msa0026840:intron | 35.0% | |
| GACTTTAATAGTATGCAACC+TGG | + | chr1_1:50909094-50909113 | None:intergenic | 35.0% | |
| TTATCAGGAACAACAGTAAC+CGG | + | chr1_1:50909219-50909238 | None:intergenic | 35.0% | |
| !! | AGATTTGCTGGTACATTATC+AGG | + | chr1_1:50909234-50909253 | None:intergenic | 35.0% |
| !! | GATATTTCTGGAAGATTTGC+TGG | + | chr1_1:50909246-50909265 | None:intergenic | 35.0% |
| GATATAGAGACTGTAGGTAT+AGG | + | chr1_1:50909337-50909356 | None:intergenic | 35.0% | |
| TTTAATTGTTGTCGCAGCTT+CGG | - | chr1_1:50909364-50909383 | Msa0026840:intron | 35.0% | |
| AAATTCTGTTCCTACCTCTT+TGG | - | chr1_1:50909388-50909407 | Msa0026840:intron | 35.0% | |
| ! | ATGATTTTCCACAACCTTCA+AGG | + | chr1_1:50909606-50909625 | None:intergenic | 35.0% |
| GGTTGTGGAAAATCATGATT+TGG | - | chr1_1:50909610-50909629 | Msa0026840:intron | 35.0% | |
| TGATACATTATCAGGAACAG+CGG | + | chr1_1:50909639-50909658 | None:intergenic | 35.0% | |
| GATATAGAGACTGTAGGTAT+AGG | + | chr1_1:50909337-50909356 | None:intergenic | 35.0% | |
| ! | TCCTACTTCTTTGTTATCAC+CGG | - | chr1_1:50909827-50909846 | Msa0026840:intron | 35.0% |
| ACGGGATATGTCAATTAAGA+CGG | - | chr1_1:50909893-50909912 | Msa0026840:intron | 35.0% | |
| ATATGTCAATTAAGACGGGT+AGG | - | chr1_1:50909898-50909917 | Msa0026840:intron | 35.0% | |
| TATGTCAATTAAGACGGGTA+GGG | - | chr1_1:50909899-50909918 | Msa0026840:intron | 35.0% | |
| GGGTTTAACATTATGTATCC+GGG | + | chr1_1:50909964-50909983 | None:intergenic | 35.0% | |
| ! | TCTTCCCTTTTGTGATTGAA+CGG | + | chr1_1:50910102-50910121 | None:intergenic | 35.0% |
| GAAGAGTAAACACAATGTCT+GGG | - | chr1_1:50910117-50910136 | Msa0026840:intron | 35.0% | |
| ! | GGTTTTTGCTGAAAAGGTTT+TGG | + | chr1_1:50910174-50910193 | None:intergenic | 35.0% |
| TCTTCTGTAAAATCTCCTCA+AGG | - | chr1_1:50910272-50910291 | Msa0026840:intron | 35.0% | |
| AATGTAAGTCACTCGAACAA+GGG | - | chr1_1:50910299-50910318 | Msa0026840:intron | 35.0% | |
| !!! | TTTTTGAGACTCAATGACTC+TGG | + | chr1_1:50910353-50910372 | None:intergenic | 35.0% |
| AGTCTCAAAAAATCCAGATC+TGG | - | chr1_1:50910362-50910381 | Msa0026840:three_prime_UTR | 35.0% | |
| !! | GTTTGGGTTATTTTGTAGGA+AGG | - | chr1_1:50910598-50910617 | Msa0026840:intron | 35.0% |
| TGATATCTTCAACAACCTAC+TGG | - | chr1_1:50910680-50910699 | Msa0026840:CDS | 35.0% | |
| ! | CTTTTTACATTTTACCGTCC+AGG | - | chr1_1:50910735-50910754 | Msa0026840:intron | 35.0% |
| CCTGAATTTCTGTAATCTCA+CGG | + | chr1_1:50910762-50910781 | None:intergenic | 35.0% | |
| GAGATTACAGAAATTCAGGA+AGG | - | chr1_1:50910763-50910782 | Msa0026840:intron | 35.0% | |
| AATGATGAAGAGCCTCTAAA+AGG | + | chr1_1:50910805-50910824 | None:intergenic | 35.0% | |
| !! | TTTTAGAGGCTCTTCATCAT+TGG | - | chr1_1:50910804-50910823 | Msa0026840:intron | 35.0% |
| TTTAGAGGCTCTTCATCATT+GGG | - | chr1_1:50910805-50910824 | Msa0026840:intron | 35.0% | |
| TAGTTGGGCAGAGATAATTA+CGG | + | chr1_1:50910930-50910949 | None:intergenic | 35.0% | |
| TTCTCACTAATACCTAACTG+AGG | - | chr1_1:50910960-50910979 | Msa0026840:CDS | 35.0% | |
| ACTAATACCTAACTGAGGTT+CGG | - | chr1_1:50910965-50910984 | Msa0026840:CDS | 35.0% | |
| CGGCTCCATTATTTAATCTT+TGG | - | chr1_1:50911172-50911191 | Msa0026840:CDS | 35.0% | |
| ACAAGTACAACAGCAAAATC+GGG | + | chr1_1:50911255-50911274 | None:intergenic | 35.0% | |
| TTGTACTTGTAGTCTTCAGT+GGG | - | chr1_1:50911265-50911284 | Msa0026840:CDS | 35.0% | |
| ! | TCTGCGAGTTTTGCAATATA+TGG | - | chr1_1:50911422-50911441 | Msa0026840:CDS | 35.0% |
| ! | CTGCGAGTTTTGCAATATAT+GGG | - | chr1_1:50911423-50911442 | Msa0026840:CDS | 35.0% |
| GCAATATATGGGCAATTAAC+TGG | - | chr1_1:50911434-50911453 | Msa0026840:CDS | 35.0% | |
| GCCAAAAACACATAAAGATG+GGG | - | chr1_1:50911761-50911780 | Msa0026840:CDS | 35.0% | |
| !!! | ATTTACACCTCGGTGTTTTT+AGG | - | chr1_1:50912187-50912206 | Msa0026840:CDS | 35.0% |
| AAATCAAAAGGAGGAGAAAC+AGG | + | chr1_1:50912355-50912374 | None:intergenic | 35.0% | |
| ATTCAAAAAGGAGGAGAAAC+AGG | + | chr1_1:50912460-50912479 | None:intergenic | 35.0% | |
| TTTATCTAATCTGCTGACAG+TGG | + | chr1_1:50912483-50912502 | None:intergenic | 35.0% | |
| TGTTTCGACAACTCAATCAT+AGG | - | chr1_1:50912618-50912637 | Msa0026840:CDS | 35.0% | |
| ! | ATTTGAAGTGTAACTGCGTA+AGG | + | chr1_1:50912666-50912685 | None:intergenic | 35.0% |
| TTACGCAGTTACACTTCAAA+TGG | - | chr1_1:50912665-50912684 | Msa0026840:intron | 35.0% | |
| ATCAATAACAGAGGGACATA+TGG | + | chr1_1:50912737-50912756 | None:intergenic | 35.0% | |
| ATTAGGTGAACTTCTGATTC+TGG | - | chr1_1:50912982-50913001 | Msa0026840:intron | 35.0% | |
| ! | AACTTCTGATTCTGGTGTTT+TGG | - | chr1_1:50912990-50913009 | Msa0026840:intron | 35.0% |
| !! | TGATTCTGGTGTTTTGGATA+TGG | - | chr1_1:50912996-50913015 | Msa0026840:intron | 35.0% |
| !! | TGGTGTTTTGGATATGGTTT+GGG | - | chr1_1:50913002-50913021 | Msa0026840:intron | 35.0% |
| ! | AACTCGTTCAAAGTATTCAC+TGG | - | chr1_1:50913072-50913091 | Msa0026840:intron | 35.0% |
| !!! | TTTTGGTTCTTAGTGTTGTC+TGG | - | chr1_1:50913114-50913133 | Msa0026840:intron | 35.0% |
| ! | TTAGCATTTTCATGTGCTGA+TGG | - | chr1_1:50913241-50913260 | Msa0026840:intron | 35.0% |
| ATACTTAAATCTCAGGTGAG+GGG | + | chr1_1:50913439-50913458 | None:intergenic | 35.0% | |
| TGGAAAGAAGAATTGACGAA+AGG | + | chr1_1:50913488-50913507 | None:intergenic | 35.0% | |
| AATACATCAACTCTACATGG+AGG | + | chr1_1:50913586-50913605 | None:intergenic | 35.0% | |
| GCTAATACATCAACTCTACA+TGG | + | chr1_1:50913589-50913608 | None:intergenic | 35.0% | |
| AGAGAAATAAGTCAGAGGAG+AGG | + | chr1_1:50907786-50907805 | None:intergenic | 40.0% | |
| GTGTGAATGAATGCGATGTT+TGG | + | chr1_1:50907813-50907832 | None:intergenic | 40.0% | |
| CATCGCATTCATTCACACAA+TGG | - | chr1_1:50907815-50907834 | Msa0026840:intron | 40.0% | |
| ! | AAGAAGAAGAAGAAGGTGTG+GGG | + | chr1_1:50907872-50907891 | None:intergenic | 40.0% |
| ! | GAAGAAGAAGAAGAAGGTGT+GGG | + | chr1_1:50907873-50907892 | None:intergenic | 40.0% |
| AGAAGAAGAAGAAGAAGGTG+TGG | + | chr1_1:50907874-50907893 | None:intergenic | 40.0% | |
| TTCTTCTTGCTTCCAACGAA+CGG | - | chr1_1:50907887-50907906 | Msa0026840:intron | 40.0% | |
| CGTATAATGTAACCGTTCGT+TGG | + | chr1_1:50907902-50907921 | None:intergenic | 40.0% | |
| CGGTTACATTATACGATTGG+TGG | - | chr1_1:50907907-50907926 | Msa0026840:intron | 40.0% | |
| TGGCTCGTTAAATCATCTCA+AGG | - | chr1_1:50907927-50907946 | Msa0026840:intron | 40.0% | |
| AGAACAAAGAAGCAAGCAGA+TGG | + | chr1_1:50908030-50908049 | None:intergenic | 40.0% | |
| TATACCATCGACAGTCTCAA+GGG | + | chr1_1:50908477-50908496 | None:intergenic | 40.0% | |
| ATATACCATCGACAGTCTCA+AGG | + | chr1_1:50908478-50908497 | None:intergenic | 40.0% | |
| AAACAGTGCACACTGGATAA+TGG | - | chr1_1:50908524-50908543 | Msa0026840:intron | 40.0% | |
| !! | ATCAGAAACCGGTACTGATT+CGG | - | chr1_1:50908749-50908768 | Msa0026840:intron | 40.0% |
| AAAGTCCATTCCTACTTCGT+CGG | - | chr1_1:50908948-50908967 | Msa0026840:intron | 40.0% | |
| ATGGAGTCTTGCAATTCTCT+GGG | + | chr1_1:50908990-50909009 | None:intergenic | 40.0% | |
| AATGGAGTCTTGCAATTCTC+TGG | + | chr1_1:50908991-50909010 | None:intergenic | 40.0% | |
| TGAGACTTTGCATTCATCTC+CGG | + | chr1_1:50909016-50909035 | None:intergenic | 40.0% | |
| AGTCTCAAAGAAGATGAGTG+GGG | - | chr1_1:50909029-50909048 | Msa0026840:intron | 40.0% | |
| GTTGATATTGCTTGTGGTAG+TGG | - | chr1_1:50909051-50909070 | Msa0026840:intron | 40.0% | |
| ! | AACCGGATCATGATTTTCGA+CGG | + | chr1_1:50909202-50909221 | None:intergenic | 40.0% |
| AGTGAGGTCAACGATATTCA+TGG | - | chr1_1:50909470-50909489 | Msa0026840:intron | 40.0% | |
| GTCAACGATATTCATGGTAG+TGG | - | chr1_1:50909476-50909495 | Msa0026840:intron | 40.0% | |
| AGTCCTTAGTACTATGCAAC+CGG | + | chr1_1:50909520-50909539 | None:intergenic | 40.0% | |
| TCTTTCTCTGGATTCTTGAG+AGG | + | chr1_1:50909572-50909591 | None:intergenic | 40.0% | |
| TCCGGTGATAACAAAGAAGT+AGG | + | chr1_1:50909831-50909850 | None:intergenic | 40.0% | |
| TTATCACCGGATAAGACCAT+GGG | - | chr1_1:50909840-50909859 | Msa0026840:intron | 40.0% | |
| CGGGATATGTCAATTAAGAC+GGG | - | chr1_1:50909894-50909913 | Msa0026840:intron | 40.0% | |
| GTCAATGTTGTTCATGGTAG+TGG | - | chr1_1:50909921-50909940 | Msa0026840:intron | 40.0% | |
| !! | AATGTTGTTCATGGTAGTGG+CGG | - | chr1_1:50909924-50909943 | Msa0026840:intron | 40.0% |
| TCTTTATCTGGATGTGTTGC+AGG | + | chr1_1:50910017-50910036 | None:intergenic | 40.0% | |
| ACACCCGTTCAATCACAAAA+GGG | - | chr1_1:50910095-50910114 | Msa0026840:intron | 40.0% | |
| ! | CTTCCCTTTTGTGATTGAAC+GGG | + | chr1_1:50910101-50910120 | None:intergenic | 40.0% |
| GGAAGAGTAAACACAATGTC+TGG | - | chr1_1:50910116-50910135 | Msa0026840:intron | 40.0% | |
| ! | GGAGATTTTACAGAAGATGC+AGG | + | chr1_1:50910269-50910288 | None:intergenic | 40.0% |
| CTGTAAAATCTCCTCAAGGA+AGG | - | chr1_1:50910276-50910295 | Msa0026840:intron | 40.0% | |
| TGACTTACATTCCTTCCTTG+AGG | + | chr1_1:50910290-50910309 | None:intergenic | 40.0% | |
| GAATGTAAGTCACTCGAACA+AGG | - | chr1_1:50910298-50910317 | Msa0026840:intron | 40.0% | |
| !! | TGGGTTATTTTGTAGGAAGG+TGG | - | chr1_1:50910601-50910620 | Msa0026840:intron | 40.0% |
| ! | TTCTACCTCCCTTAGAGTTT+TGG | - | chr1_1:50910625-50910644 | Msa0026840:intron | 40.0% |
| TGATTGCGCCAAAACTCTAA+GGG | + | chr1_1:50910636-50910655 | None:intergenic | 40.0% | |
| TTGATTGCGCCAAAACTCTA+AGG | + | chr1_1:50910637-50910656 | None:intergenic | 40.0% | |
| CCGTGAGATTACAGAAATTC+AGG | - | chr1_1:50910759-50910778 | Msa0026840:intron | 40.0% | |
| AGTTGGGCAGAGATAATTAC+GGG | + | chr1_1:50910929-50910948 | None:intergenic | 40.0% | |
| ! | GATTAAATAATGGAGCCGGT+GGG | + | chr1_1:50911170-50911189 | None:intergenic | 40.0% |
| ! | AGATTAAATAATGGAGCCGG+TGG | + | chr1_1:50911171-50911190 | None:intergenic | 40.0% |
| TCGGGACGATAATTCAAGAT+AGG | + | chr1_1:50911237-50911256 | None:intergenic | 40.0% | |
| GTTGTACTTGTAGTCTTCAG+TGG | - | chr1_1:50911264-50911283 | Msa0026840:CDS | 40.0% | |
| CTGGTAACATAATCATGAGC+CGG | + | chr1_1:50911340-50911359 | None:intergenic | 40.0% | |
| TCTAACATTGGACTTGGATC+TGG | + | chr1_1:50911359-50911378 | None:intergenic | 40.0% | |
| AAATCAGTGCCTTAACGTCA+GGG | - | chr1_1:50911504-50911523 | Msa0026840:intron | 40.0% | |
| TTTGCACCTCACCAAAAACT+AGG | - | chr1_1:50911633-50911652 | Msa0026840:intron | 40.0% | |
| !! | CACAAGTTAGGCCTAGTTTT+TGG | + | chr1_1:50911647-50911666 | None:intergenic | 40.0% |
| ! | GCCCCATCTTTATGTGTTTT+TGG | + | chr1_1:50911765-50911784 | None:intergenic | 40.0% |
| GTTAAAAAATTTGCACCCCC+TGG | - | chr1_1:50912227-50912246 | Msa0026840:CDS | 40.0% | |
| ! | ATTTTACCCACGTTAAGCAG+TGG | + | chr1_1:50912271-50912290 | None:intergenic | 40.0% |
| GAATAATAAGTGACGCCGTT+CGG | - | chr1_1:50912304-50912323 | Msa0026840:CDS | 40.0% | |
| CTGATGCATCTTATACCGAA+CGG | + | chr1_1:50912322-50912341 | None:intergenic | 40.0% | |
| ! | TGACAGTGGATTCAAAAAGG+AGG | + | chr1_1:50912469-50912488 | None:intergenic | 40.0% |
| ! | TGCTGACAGTGGATTCAAAA+AGG | + | chr1_1:50912472-50912491 | None:intergenic | 40.0% |
| ATAACAGAGGGACATATGGT+TGG | + | chr1_1:50912733-50912752 | None:intergenic | 40.0% | |
| ! | ACTTGGCTATGAGGTTTGTT+TGG | - | chr1_1:50912893-50912912 | Msa0026840:CDS | 40.0% |
| !! | CTGGTGTTTTGGATATGGTT+TGG | - | chr1_1:50913001-50913020 | Msa0026840:intron | 40.0% |
| !! | GGTGTTTTGGATATGGTTTG+GGG | - | chr1_1:50913003-50913022 | Msa0026840:intron | 40.0% |
| AACTCGTGAGGAGTTAACAT+GGG | + | chr1_1:50913379-50913398 | None:intergenic | 40.0% | |
| TAACTCGTGAGGAGTTAACA+TGG | + | chr1_1:50913380-50913399 | None:intergenic | 40.0% | |
| GGGGTGCAATTAGAAGAACT+GGG | + | chr1_1:50907852-50907871 | None:intergenic | 45.0% | |
| ! | AGAAGAAGAAGAAGGTGTGG+GGG | + | chr1_1:50907871-50907890 | None:intergenic | 45.0% |
| TTACTTTGTGGAAGAGACGC+CGG | + | chr1_1:50907976-50907995 | None:intergenic | 45.0% | |
| !! | GATTCAGAGAAGAAGCGCTT+CGG | - | chr1_1:50908408-50908427 | Msa0026840:intron | 45.0% |
| !! | ATTCAGAGAAGAAGCGCTTC+GGG | - | chr1_1:50908409-50908428 | Msa0026840:intron | 45.0% |
| !! | GGATAATGGTTTTACTCCCC+AGG | - | chr1_1:50908538-50908557 | Msa0026840:intron | 45.0% |
| TGTTTCATTGCTACCCCTGA+TGG | - | chr1_1:50908623-50908642 | Msa0026840:intron | 45.0% | |
| !! | TCAGAAACCGGTACTGATTC+GGG | - | chr1_1:50908750-50908769 | Msa0026840:intron | 45.0% |
| !! | TGATTCGGGCAATGCTGTTT+TGG | - | chr1_1:50908764-50908783 | Msa0026840:intron | 45.0% |
| CAATACCGACGAAGTAGGAA+TGG | + | chr1_1:50908956-50908975 | None:intergenic | 45.0% | |
| TGGAGTCTTGCAATTCTCTG+GGG | + | chr1_1:50908989-50909008 | None:intergenic | 45.0% | |
| AATTGCAAGACTCCATTCCC+CGG | - | chr1_1:50908994-50909013 | Msa0026840:intron | 45.0% | |
| AGACTTTGCATTCATCTCCG+GGG | + | chr1_1:50909014-50909033 | None:intergenic | 45.0% | |
| GAGACTTTGCATTCATCTCC+GGG | + | chr1_1:50909015-50909034 | None:intergenic | 45.0% | |
| !! | AGTGGGGTTGATATTGCTTG+TGG | - | chr1_1:50909045-50909064 | Msa0026840:intron | 45.0% |
| TCTTCATCTGAACGCTTGAG+AGG | + | chr1_1:50909159-50909178 | None:intergenic | 45.0% | |
| ! | ATGATTTTCGACGGCCTTTG+AGG | + | chr1_1:50909193-50909212 | None:intergenic | 45.0% |
| !! | ACGATATTCATGGTAGTGGC+CGG | - | chr1_1:50909480-50909499 | Msa0026840:intron | 45.0% |
| TTCAAATGTTGTCGCAGCTG+TGG | - | chr1_1:50909794-50909813 | Msa0026840:intron | 45.0% | |
| GTTATCACCGGATAAGACCA+TGG | - | chr1_1:50909839-50909858 | Msa0026840:intron | 45.0% | |
| ACATATCCCGTTCATCTTCG+AGG | + | chr1_1:50909884-50909903 | None:intergenic | 45.0% | |
| GGTAGGGTCAATGTTGTTCA+TGG | - | chr1_1:50909915-50909934 | Msa0026840:intron | 45.0% | |
| !! | ATGTTGTTCATGGTAGTGGC+GGG | - | chr1_1:50909925-50909944 | Msa0026840:intron | 45.0% |
| ! | GCAGAGATCTGGTCTTTATC+TGG | + | chr1_1:50910029-50910048 | None:intergenic | 45.0% |
| TCCTCCATCAGTCATTTCCA+AGG | + | chr1_1:50910060-50910079 | None:intergenic | 45.0% | |
| GACACCCGTTCAATCACAAA+AGG | - | chr1_1:50910094-50910113 | Msa0026840:intron | 45.0% | |
| AGTAAACACAATGTCTGGGC+AGG | - | chr1_1:50910121-50910140 | Msa0026840:intron | 45.0% | |
| GGCGACAATTGAAACAGAAG+CGG | - | chr1_1:50910217-50910236 | Msa0026840:intron | 45.0% | |
| ! | CAATGACTCTGGAGAAACTG+TGG | + | chr1_1:50910342-50910361 | None:intergenic | 45.0% |
| !! | TAGCATTGGCTGAGAAGTGT+TGG | + | chr1_1:50910519-50910538 | None:intergenic | 45.0% |
| TTTCTGTAATCTCACGGTCC+TGG | + | chr1_1:50910756-50910775 | None:intergenic | 45.0% | |
| CTAACTGAGGTTCGGAAGAA+GGG | - | chr1_1:50910973-50910992 | Msa0026840:CDS | 45.0% | |
| AACGTAGAAGTCTAACCCAC+CGG | - | chr1_1:50911152-50911171 | Msa0026840:CDS | 45.0% | |
| ACTCCAAGCAGTGGAGATTT+GGG | + | chr1_1:50911477-50911496 | None:intergenic | 45.0% | |
| ! | TTGTTTTCCACTCCAAGCAG+TGG | + | chr1_1:50911486-50911505 | None:intergenic | 45.0% |
| CAAATCAGTGCCTTAACGTC+AGG | - | chr1_1:50911503-50911522 | Msa0026840:intron | 45.0% | |
| TTTAGAAATCCAGGGTGTGC+AGG | + | chr1_1:50911559-50911578 | None:intergenic | 45.0% | |
| TTATGGCTATTTGCACACCC+TGG | - | chr1_1:50911601-50911620 | Msa0026840:intron | 45.0% | |
| !!! | GTTAGGCCTAGTTTTTGGTG+AGG | + | chr1_1:50911642-50911661 | None:intergenic | 45.0% |
| AGAGCATATGCGCACAAGTT+AGG | + | chr1_1:50911659-50911678 | None:intergenic | 45.0% | |
| !!! | TACACCTCGGTGTTTTTAGG+TGG | - | chr1_1:50912190-50912209 | Msa0026840:CDS | 45.0% |
| !!! | ACACCTCGGTGTTTTTAGGT+GGG | - | chr1_1:50912191-50912210 | Msa0026840:CDS | 45.0% |
| AAAAGGAGGAGAAACAGGCT+TGG | + | chr1_1:50912350-50912369 | None:intergenic | 45.0% | |
| GCTGATGCGTCTTATACAGA+CGG | + | chr1_1:50912428-50912447 | None:intergenic | 45.0% | |
| AAAAGGAGGAGAAACAGGCT+TGG | + | chr1_1:50912350-50912369 | None:intergenic | 45.0% | |
| ACTCGTGAGGAGTTAACATG+GGG | + | chr1_1:50913378-50913397 | None:intergenic | 45.0% | |
| CAACTCTACATGGAGGAGAT+TGG | + | chr1_1:50913579-50913598 | None:intergenic | 45.0% | |
| !!! | TGAATAATTTATTTATTTTT+TGG | - | chr1_1:50913512-50913531 | Msa0026840:five_prime_UTR | 5.0% |
| TCTCTCTCTCTCACGCTGTA+CGG | + | chr1_1:50907757-50907776 | None:intergenic | 50.0% | |
| ! | GGGGGTGCAATTAGAAGAAC+TGG | + | chr1_1:50907853-50907872 | None:intergenic | 50.0% |
| AACCACCGTTTAGCCATCTC+CGG | - | chr1_1:50907954-50907973 | Msa0026840:intron | 50.0% | |
| GTTTCCCTTGAGACTGTCGA+TGG | - | chr1_1:50908470-50908489 | Msa0026840:intron | 50.0% | |
| AGCATTGCCCGAATCAGTAC+CGG | + | chr1_1:50908760-50908779 | None:intergenic | 50.0% | |
| TCAGGCAATACCGACGAAGT+AGG | + | chr1_1:50908961-50908980 | None:intergenic | 50.0% | |
| TTCGTCGGTATTGCCTGAAG+AGG | - | chr1_1:50908963-50908982 | Msa0026840:intron | 50.0% | |
| TTGCATTCATCTCCGGGGAA+TGG | + | chr1_1:50909009-50909028 | None:intergenic | 50.0% | |
| AGAGCCAAGCTCTACCTCAA+AGG | - | chr1_1:50909176-50909195 | Msa0026840:intron | 50.0% | |
| GGCCGTCGAAAATCATGATC+CGG | - | chr1_1:50909197-50909216 | Msa0026840:intron | 50.0% | |
| TCTCTCGTGACCAAAGAGGT+AGG | + | chr1_1:50909401-50909420 | None:intergenic | 50.0% | |
| GCAATCTCTCGTGACCAAAG+AGG | + | chr1_1:50909405-50909424 | None:intergenic | 50.0% | |
| TGGCCGGTTGCATAGTACTA+AGG | - | chr1_1:50909514-50909533 | Msa0026840:intron | 50.0% | |
| TTGAGAGGATCTCCATACGC+AGG | + | chr1_1:50909557-50909576 | None:intergenic | 50.0% | |
| GTAGAGCTCTGCTCTTTCTC+TGG | + | chr1_1:50909584-50909603 | None:intergenic | 50.0% | |
| AGAGCAGAGCTCTACCTTGA+AGG | - | chr1_1:50909589-50909608 | Msa0026840:intron | 50.0% | |
| GAGCTCTACCTTGAAGGTTG+TGG | - | chr1_1:50909595-50909614 | Msa0026840:intron | 50.0% | |
| !! | CGATCTCCCATGGTCTTATC+CGG | + | chr1_1:50909849-50909868 | None:intergenic | 50.0% |
| GACCATGGGAGATCGCAATA+AGG | - | chr1_1:50909854-50909873 | Msa0026840:intron | 50.0% | |
| ! | TGCCTTATTGCGATCTCCCA+TGG | + | chr1_1:50909859-50909878 | None:intergenic | 50.0% |
| AGGCACTCCTCGAAGATGAA+CGG | - | chr1_1:50909874-50909893 | Msa0026840:intron | 50.0% | |
| GCAGGTTGCTTCTTCTGGTA+GGG | + | chr1_1:50909984-50910003 | None:intergenic | 50.0% | |
| AGCAGGTTGCTTCTTCTGGT+AGG | + | chr1_1:50909985-50910004 | None:intergenic | 50.0% | |
| CAGTAGCAGGTTGCTTCTTC+TGG | + | chr1_1:50909989-50910008 | None:intergenic | 50.0% | |
| CAGAAGAAGCAACCTGCTAC+TGG | - | chr1_1:50909987-50910006 | Msa0026840:intron | 50.0% | |
| AGTCATTTCCAAGGCTGCTG+AGG | + | chr1_1:50910051-50910070 | None:intergenic | 50.0% | |
| GCAGCCTTGGAAATGACTGA+TGG | - | chr1_1:50910053-50910072 | Msa0026840:intron | 50.0% | |
| GCCTTGGAAATGACTGATGG+AGG | - | chr1_1:50910056-50910075 | Msa0026840:intron | 50.0% | |
| GGAAATGACTGATGGAGGAC+TGG | - | chr1_1:50910061-50910080 | Msa0026840:intron | 50.0% | |
| ! | TTGCGCCAAAACTCTAAGGG+AGG | + | chr1_1:50910633-50910652 | None:intergenic | 50.0% |
| TGTAATCTCACGGTCCTGGA+CGG | + | chr1_1:50910752-50910771 | None:intergenic | 50.0% | |
| GCAGAGATAATTACGGGCAG+AGG | + | chr1_1:50910923-50910942 | None:intergenic | 50.0% | |
| CCTTCTTCCGAACCTCAGTT+AGG | + | chr1_1:50910975-50910994 | None:intergenic | 50.0% | |
| CCTAACTGAGGTTCGGAAGA+AGG | - | chr1_1:50910972-50910991 | Msa0026840:CDS | 50.0% | |
| TGAGGTTCGGAAGAAGGGTA+GGG | - | chr1_1:50910978-50910997 | Msa0026840:CDS | 50.0% | |
| TGACCCAAATCTCCACTGCT+TGG | - | chr1_1:50911471-50911490 | Msa0026840:CDS | 50.0% | |
| CACTCCAAGCAGTGGAGATT+TGG | + | chr1_1:50911478-50911497 | None:intergenic | 50.0% | |
| CAAATCTCCACTGCTTGGAG+TGG | - | chr1_1:50911476-50911495 | Msa0026840:CDS | 50.0% | |
| !! | GGTGCAAAGCAAAAGTGCCA+GGG | + | chr1_1:50911621-50911640 | None:intergenic | 50.0% |
| !! | AGGTGCAAAGCAAAAGTGCC+AGG | + | chr1_1:50911622-50911641 | None:intergenic | 50.0% |
| ACACCCACCTAAAAACACCG+AGG | + | chr1_1:50912197-50912216 | None:intergenic | 50.0% | |
| AATTTGCACCCCCTGGTCTA+AGG | - | chr1_1:50912234-50912253 | Msa0026840:CDS | 50.0% | |
| TATCCAGGACCTTAGACCAG+GGG | + | chr1_1:50912246-50912265 | None:intergenic | 50.0% | |
| GTATCCAGGACCTTAGACCA+GGG | + | chr1_1:50912247-50912266 | None:intergenic | 50.0% | |
| GATACGCCACTGCTTAACGT+GGG | - | chr1_1:50912262-50912281 | Msa0026840:CDS | 50.0% | |
| GGTTCTTAGTGTTGTCTGGC+TGG | - | chr1_1:50913118-50913137 | Msa0026840:intron | 50.0% | |
| AGACGCCGGAGATGGCTAAA+CGG | + | chr1_1:50907962-50907981 | None:intergenic | 55.0% | |
| !! | CAATTCTCTGGGGCCTCTTC+AGG | + | chr1_1:50908979-50908998 | None:intergenic | 55.0% |
| ! | CGCGATGTAGGATGCTGCTT+CGG | + | chr1_1:50909132-50909151 | None:intergenic | 55.0% |
| AAGCAGCATCCTACATCGCG+AGG | - | chr1_1:50909132-50909151 | Msa0026840:intron | 55.0% | |
| TTGAGAGGACCTCGCGATGT+AGG | + | chr1_1:50909144-50909163 | None:intergenic | 55.0% | |
| !! | ACGGCCTTTGAGGTAGAGCT+TGG | + | chr1_1:50909183-50909202 | None:intergenic | 55.0% |
| CATACGCAGGCTGCTTCTTC+TGG | + | chr1_1:50909544-50909563 | None:intergenic | 55.0% | |
| CAGAAGAAGCAGCCTGCGTA+TGG | - | chr1_1:50909542-50909561 | Msa0026840:intron | 55.0% | |
| GGCACTCCTCGAAGATGAAC+GGG | - | chr1_1:50909875-50909894 | Msa0026840:intron | 55.0% | |
| GTTGCAGGATCTCCAGTAGC+AGG | + | chr1_1:50910002-50910021 | None:intergenic | 55.0% | |
| GAGGCTCTTCATCATTGGGC+AGG | - | chr1_1:50910809-50910828 | Msa0026840:intron | 55.0% | |
| CTGAGGTTCGGAAGAAGGGT+AGG | - | chr1_1:50910977-50910996 | Msa0026840:CDS | 55.0% | |
| CAGTGCCTTAACGTCAGGGT+CGG | - | chr1_1:50911508-50911527 | Msa0026840:intron | 55.0% | |
| TAGCTCCGACCCTGACGTTA+AGG | + | chr1_1:50911516-50911535 | None:intergenic | 55.0% | |
| !! | TCGGAGCTAGCTGGTCTTGA+GGG | - | chr1_1:50911527-50911546 | Msa0026840:intron | 55.0% |
| ATCCAGGACCTTAGACCAGG+GGG | + | chr1_1:50912245-50912264 | None:intergenic | 55.0% | |
| CGTATCCAGGACCTTAGACC+AGG | + | chr1_1:50912248-50912267 | None:intergenic | 55.0% | |
| CGTTAAGCAGTGGCGTATCC+AGG | + | chr1_1:50912261-50912280 | None:intergenic | 55.0% | |
| GGATACGCCACTGCTTAACG+TGG | - | chr1_1:50912261-50912280 | Msa0026840:CDS | 55.0% | |
| TGTGGAAGAGACGCCGGAGA+TGG | + | chr1_1:50907970-50907989 | None:intergenic | 60.0% | |
| ! | AGTGGCCGGACTAGACGTAG+TGG | - | chr1_1:50909494-50909513 | Msa0026840:intron | 60.0% |
| ACCGGCCACTACGTCTAGTC+CGG | + | chr1_1:50909502-50909521 | None:intergenic | 60.0% | |
| GCGGGAATAGACGTAGTGCC+CGG | - | chr1_1:50909943-50909962 | Msa0026840:intron | 60.0% | |
| AGGCTGCTGAGGCAGAGATC+TGG | + | chr1_1:50910040-50910059 | None:intergenic | 60.0% | |
| GATCTCTGCCTCAGCAGCCT+TGG | - | chr1_1:50910040-50910059 | Msa0026840:intron | 60.0% | |
| !! | GTCGGAGCTAGCTGGTCTTG+AGG | - | chr1_1:50911526-50911545 | Msa0026840:intron | 60.0% |
| CGCCGGAGATGGCTAAACGG+TGG | + | chr1_1:50907959-50907978 | None:intergenic | 65.0% | |
| ! | GCCGGACTAGACGTAGTGGC+CGG | - | chr1_1:50909498-50909517 | Msa0026840:intron | 65.0% |
| ACGTCAGGGTCGGAGCTAGC+TGG | - | chr1_1:50911518-50911537 | Msa0026840:intron | 65.0% | |
| ! | CACCCCCTGGTCTAAGGTCC+TGG | - | chr1_1:50912240-50912259 | Msa0026840:CDS | 65.0% |
| GGGTGTGCACCTGCACACCC+TGG | - | chr1_1:50911547-50911566 | Msa0026840:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 50907709 | 50913618 | 50907709 | ID=Msa0026840;Name=Msa0026840 |
| chr1_1 | mRNA | 50907709 | 50913618 | 50907709 | ID=Msa0026840-mRNA-1;Parent=Msa0026840;Name=Msa0026840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=125|1|1|1|0.77|0.7|10|371|604 |
| chr1_1 | exon | 50907709 | 50907782 | 50907709 | ID=Msa0026840-mRNA-1:exon:14829;Parent=Msa0026840-mRNA-1 |
| chr1_1 | exon | 50908044 | 50908190 | 50908044 | ID=Msa0026840-mRNA-1:exon:14828;Parent=Msa0026840-mRNA-1 |
| chr1_1 | exon | 50910328 | 50910570 | 50910328 | ID=Msa0026840-mRNA-1:exon:14827;Parent=Msa0026840-mRNA-1 |
| chr1_1 | exon | 50910653 | 50910711 | 50910653 | ID=Msa0026840-mRNA-1:exon:14826;Parent=Msa0026840-mRNA-1 |
| chr1_1 | exon | 50910944 | 50911516 | 50910944 | ID=Msa0026840-mRNA-1:exon:14825;Parent=Msa0026840-mRNA-1 |
| chr1_1 | exon | 50911641 | 50911946 | 50911641 | ID=Msa0026840-mRNA-1:exon:14824;Parent=Msa0026840-mRNA-1 |
| chr1_1 | exon | 50912054 | 50912386 | 50912054 | ID=Msa0026840-mRNA-1:exon:14823;Parent=Msa0026840-mRNA-1 |
| chr1_1 | exon | 50912502 | 50912649 | 50912502 | ID=Msa0026840-mRNA-1:exon:14822;Parent=Msa0026840-mRNA-1 |
| chr1_1 | exon | 50912768 | 50912912 | 50912768 | ID=Msa0026840-mRNA-1:exon:14821;Parent=Msa0026840-mRNA-1 |
| chr1_1 | exon | 50913336 | 50913618 | 50913336 | ID=Msa0026840-mRNA-1:exon:14820;Parent=Msa0026840-mRNA-1 |
| chr1_1 | five_prime_UTR | 50913494 | 50913618 | 50913494 | ID=Msa0026840-mRNA-1:five_prime_utr;Parent=Msa0026840-mRNA-1 |
| chr1_1 | CDS | 50913336 | 50913493 | 50913336 | ID=Msa0026840-mRNA-1:cds;Parent=Msa0026840-mRNA-1 |
| chr1_1 | CDS | 50912768 | 50912912 | 50912768 | ID=Msa0026840-mRNA-1:cds;Parent=Msa0026840-mRNA-1 |
| chr1_1 | CDS | 50912502 | 50912649 | 50912502 | ID=Msa0026840-mRNA-1:cds;Parent=Msa0026840-mRNA-1 |
| chr1_1 | CDS | 50912054 | 50912386 | 50912054 | ID=Msa0026840-mRNA-1:cds;Parent=Msa0026840-mRNA-1 |
| chr1_1 | CDS | 50911641 | 50911946 | 50911641 | ID=Msa0026840-mRNA-1:cds;Parent=Msa0026840-mRNA-1 |
| chr1_1 | CDS | 50910944 | 50911516 | 50910944 | ID=Msa0026840-mRNA-1:cds;Parent=Msa0026840-mRNA-1 |
| chr1_1 | CDS | 50910653 | 50910711 | 50910653 | ID=Msa0026840-mRNA-1:cds;Parent=Msa0026840-mRNA-1 |
| chr1_1 | CDS | 50910478 | 50910570 | 50910478 | ID=Msa0026840-mRNA-1:cds;Parent=Msa0026840-mRNA-1 |
| chr1_1 | three_prime_UTR | 50910328 | 50910477 | 50910328 | ID=Msa0026840-mRNA-1:three_prime_utr;Parent=Msa0026840-mRNA-1 |
| chr1_1 | three_prime_UTR | 50908044 | 50908190 | 50908044 | ID=Msa0026840-mRNA-1:three_prime_utr;Parent=Msa0026840-mRNA-1 |
| chr1_1 | three_prime_UTR | 50907709 | 50907782 | 50907709 | ID=Msa0026840-mRNA-1:three_prime_utr;Parent=Msa0026840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
