Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0027000 | XP_024641248.2 | 73.117 | 770 | 191 | 5 | 1 | 765 | 1 | 759 | 0.0 | 1152 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0027000 | sp|Q9SY66|FRS11_ARATH | 49.206 | 630 | 309 | 4 | 48 | 672 | 42 | 665 | 0.0 | 642 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0027000 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0027000 | MtrunA17_Chr1g0198761 | 73.117 | 770 | 191 | 5 | 1 | 765 | 1 | 759 | 0.0 | 1152 |
Msa0027000 | MtrunA17_Chr5g0431001 | 75.052 | 481 | 110 | 2 | 1 | 471 | 1 | 481 | 0.0 | 746 |
Msa0027000 | MtrunA17_Chr2g0276841 | 48.036 | 662 | 320 | 7 | 19 | 672 | 42 | 687 | 0.0 | 655 |
Msa0027000 | MtrunA17_Chr2g0294841 | 42.507 | 734 | 381 | 10 | 34 | 739 | 25 | 745 | 0.0 | 600 |
Msa0027000 | MtrunA17_Chr2g0290391 | 46.772 | 635 | 299 | 9 | 53 | 666 | 50 | 666 | 0.0 | 565 |
Msa0027000 | MtrunA17_Chr1g0202341 | 30.795 | 604 | 395 | 10 | 19 | 614 | 20 | 608 | 1.22e-86 | 288 |
Msa0027000 | MtrunA17_Chr5g0448761 | 31.552 | 580 | 363 | 13 | 54 | 614 | 60 | 624 | 5.65e-82 | 278 |
Msa0027000 | MtrunA17_Chr3g0080351 | 29.202 | 589 | 351 | 14 | 54 | 616 | 76 | 624 | 1.54e-76 | 264 |
Msa0027000 | MtrunA17_Chr2g0296781 | 29.472 | 682 | 429 | 20 | 60 | 716 | 3 | 657 | 7.26e-75 | 257 |
Msa0027000 | MtrunA17_Chr5g0441581 | 29.635 | 685 | 421 | 22 | 52 | 711 | 30 | 678 | 6.65e-72 | 248 |
Msa0027000 | MtrunA17_Chr1g0203051 | 27.636 | 550 | 368 | 10 | 66 | 603 | 91 | 622 | 1.58e-69 | 241 |
Msa0027000 | MtrunA17_Chr2g0329031 | 27.221 | 709 | 439 | 20 | 60 | 733 | 20 | 686 | 2.04e-69 | 243 |
Msa0027000 | MtrunA17_Chr6g0458391 | 29.361 | 579 | 372 | 9 | 46 | 616 | 217 | 766 | 3.02e-69 | 243 |
Msa0027000 | MtrunA17_Chr1g0207551 | 30.261 | 575 | 371 | 12 | 54 | 616 | 34 | 590 | 4.19e-69 | 243 |
Msa0027000 | MtrunA17_Chr2g0287651 | 28.596 | 570 | 373 | 12 | 60 | 614 | 81 | 631 | 8.95e-67 | 238 |
Msa0027000 | MtrunA17_Chr2g0287061 | 28.201 | 578 | 338 | 14 | 54 | 614 | 183 | 700 | 1.90e-66 | 235 |
Msa0027000 | MtrunA17_Chr8g0363841 | 28.348 | 575 | 381 | 12 | 55 | 614 | 18 | 576 | 8.10e-66 | 231 |
Msa0027000 | MtrunA17_Chr6g0477261 | 30.965 | 549 | 345 | 14 | 184 | 710 | 4 | 540 | 1.08e-65 | 231 |
Msa0027000 | MtrunA17_Chr5g0440451 | 26.170 | 684 | 425 | 17 | 54 | 697 | 43 | 686 | 2.37e-64 | 231 |
Msa0027000 | MtrunA17_Chr3g0082121 | 29.479 | 614 | 374 | 23 | 43 | 636 | 32 | 606 | 9.08e-63 | 223 |
Msa0027000 | MtrunA17_Chr2g0324011 | 27.491 | 582 | 393 | 14 | 46 | 614 | 2 | 567 | 1.79e-59 | 212 |
Msa0027000 | MtrunA17_Chr1g0196541 | 27.473 | 728 | 446 | 23 | 60 | 750 | 3 | 685 | 3.35e-58 | 211 |
Msa0027000 | MtrunA17_Chr1g0203721 | 26.170 | 577 | 391 | 11 | 57 | 616 | 66 | 624 | 4.69e-57 | 209 |
Msa0027000 | MtrunA17_Chr5g0448511 | 32.011 | 378 | 250 | 3 | 239 | 610 | 16 | 392 | 9.65e-56 | 200 |
Msa0027000 | MtrunA17_Chr3g0118611 | 30.189 | 424 | 284 | 6 | 193 | 610 | 79 | 496 | 6.59e-55 | 202 |
Msa0027000 | MtrunA17_Chr2g0291581 | 23.182 | 660 | 427 | 13 | 53 | 674 | 70 | 687 | 1.25e-49 | 186 |
Msa0027000 | MtrunA17_Chr3g0081281 | 87.097 | 93 | 12 | 0 | 199 | 291 | 1 | 93 | 2.06e-48 | 165 |
Msa0027000 | MtrunA17_Chr5g0430921 | 79.545 | 88 | 15 | 1 | 669 | 756 | 1 | 85 | 4.20e-41 | 145 |
Msa0027000 | MtrunA17_Chr2g0291591 | 24.953 | 533 | 347 | 14 | 54 | 563 | 64 | 566 | 2.74e-40 | 156 |
Msa0027000 | MtrunA17_Chr1g0164591 | 32.524 | 206 | 137 | 2 | 250 | 454 | 104 | 308 | 3.09e-34 | 134 |
Msa0027000 | MtrunA17_Chr7g0258861 | 25.253 | 297 | 207 | 6 | 46 | 337 | 2 | 288 | 2.76e-23 | 101 |
Msa0027000 | MtrunA17_Chr2g0308841 | 26.126 | 222 | 154 | 5 | 408 | 623 | 14 | 231 | 2.07e-17 | 83.2 |
Msa0027000 | MtrunA17_Chr1g0171741 | 32.203 | 118 | 68 | 3 | 60 | 174 | 139 | 247 | 3.60e-13 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0027000 | AT1G10240.2 | 49.206 | 630 | 309 | 4 | 48 | 672 | 42 | 665 | 0.0 | 642 |
Msa0027000 | AT1G10240.1 | 49.206 | 630 | 309 | 4 | 48 | 672 | 42 | 665 | 0.0 | 642 |
Msa0027000 | AT5G28530.3 | 43.407 | 675 | 338 | 11 | 25 | 678 | 28 | 679 | 0.0 | 547 |
Msa0027000 | AT5G28530.2 | 43.407 | 675 | 338 | 11 | 25 | 678 | 28 | 679 | 0.0 | 547 |
Msa0027000 | AT5G28530.1 | 43.407 | 675 | 342 | 11 | 25 | 678 | 28 | 683 | 0.0 | 547 |
Msa0027000 | AT5G28530.4 | 38.797 | 665 | 324 | 12 | 25 | 678 | 28 | 620 | 2.68e-148 | 448 |
Msa0027000 | AT5G28530.5 | 38.797 | 665 | 320 | 12 | 25 | 678 | 28 | 616 | 3.13e-148 | 447 |
Msa0027000 | AT4G38180.1 | 30.743 | 592 | 386 | 10 | 38 | 617 | 59 | 638 | 2.73e-84 | 285 |
Msa0027000 | AT4G15090.1 | 28.716 | 693 | 443 | 16 | 54 | 721 | 51 | 717 | 8.73e-82 | 278 |
Msa0027000 | AT4G15090.5 | 28.716 | 693 | 443 | 16 | 54 | 721 | 51 | 717 | 8.73e-82 | 278 |
Msa0027000 | AT4G15090.3 | 28.716 | 693 | 443 | 16 | 54 | 721 | 51 | 717 | 8.73e-82 | 278 |
Msa0027000 | AT4G15090.2 | 28.716 | 693 | 443 | 16 | 54 | 721 | 51 | 717 | 8.73e-82 | 278 |
Msa0027000 | AT4G15090.4 | 28.716 | 693 | 443 | 16 | 54 | 721 | 51 | 717 | 8.73e-82 | 278 |
Msa0027000 | AT1G76320.3 | 28.850 | 565 | 360 | 11 | 60 | 610 | 3 | 539 | 2.05e-67 | 236 |
Msa0027000 | AT1G76320.1 | 28.850 | 565 | 360 | 11 | 60 | 610 | 3 | 539 | 3.69e-67 | 236 |
Msa0027000 | AT1G76320.4 | 28.850 | 565 | 360 | 11 | 60 | 610 | 3 | 539 | 3.69e-67 | 236 |
Msa0027000 | AT1G76320.2 | 28.850 | 565 | 360 | 11 | 60 | 610 | 3 | 539 | 4.03e-67 | 236 |
Msa0027000 | AT3G22170.2 | 25.693 | 685 | 428 | 20 | 54 | 705 | 70 | 706 | 4.06e-66 | 235 |
Msa0027000 | AT3G22170.1 | 25.693 | 685 | 428 | 20 | 54 | 705 | 70 | 706 | 4.06e-66 | 235 |
Msa0027000 | AT5G18960.2 | 26.014 | 592 | 364 | 13 | 39 | 616 | 198 | 729 | 5.38e-59 | 214 |
Msa0027000 | AT5G18960.1 | 26.014 | 592 | 364 | 13 | 39 | 616 | 198 | 729 | 5.38e-59 | 214 |
Msa0027000 | AT3G06250.2 | 25.997 | 577 | 352 | 12 | 54 | 616 | 190 | 705 | 2.28e-58 | 212 |
Msa0027000 | AT3G06250.1 | 25.997 | 577 | 352 | 12 | 54 | 616 | 190 | 705 | 2.28e-58 | 212 |
Msa0027000 | AT3G06250.3 | 25.997 | 577 | 352 | 12 | 54 | 616 | 190 | 705 | 2.28e-58 | 212 |
Msa0027000 | AT2G27110.2 | 25.896 | 614 | 403 | 13 | 54 | 658 | 49 | 619 | 3.57e-55 | 204 |
Msa0027000 | AT2G27110.1 | 25.896 | 614 | 403 | 13 | 54 | 658 | 49 | 619 | 3.57e-55 | 204 |
Msa0027000 | AT2G27110.3 | 28.637 | 433 | 291 | 9 | 235 | 658 | 51 | 474 | 1.02e-50 | 189 |
Msa0027000 | AT2G32250.5 | 24.518 | 571 | 361 | 11 | 57 | 615 | 41 | 553 | 4.36e-49 | 186 |
Msa0027000 | AT4G19990.6 | 26.451 | 586 | 354 | 14 | 56 | 614 | 23 | 558 | 4.98e-49 | 185 |
Msa0027000 | AT4G19990.2 | 26.451 | 586 | 354 | 14 | 56 | 614 | 23 | 558 | 4.98e-49 | 185 |
Msa0027000 | AT2G32250.6 | 24.518 | 571 | 361 | 11 | 57 | 615 | 41 | 553 | 6.04e-49 | 186 |
Msa0027000 | AT2G32250.1 | 24.518 | 571 | 361 | 11 | 57 | 615 | 41 | 553 | 6.04e-49 | 186 |
Msa0027000 | AT2G32250.3 | 24.518 | 571 | 361 | 11 | 57 | 615 | 41 | 553 | 6.04e-49 | 186 |
Msa0027000 | AT4G19990.3 | 26.451 | 586 | 354 | 14 | 56 | 614 | 23 | 558 | 6.30e-49 | 185 |
Msa0027000 | AT4G19990.4 | 26.451 | 586 | 354 | 14 | 56 | 614 | 23 | 558 | 6.30e-49 | 185 |
Msa0027000 | AT4G19990.7 | 26.451 | 586 | 354 | 14 | 56 | 614 | 37 | 572 | 6.34e-49 | 185 |
Msa0027000 | AT2G32250.2 | 24.518 | 571 | 361 | 11 | 57 | 615 | 41 | 553 | 6.47e-49 | 185 |
Msa0027000 | AT2G32250.4 | 24.518 | 571 | 361 | 11 | 57 | 615 | 41 | 553 | 6.47e-49 | 185 |
Msa0027000 | AT4G19990.5 | 26.451 | 586 | 354 | 14 | 56 | 614 | 23 | 558 | 6.73e-49 | 185 |
Msa0027000 | AT1G52520.1 | 25.514 | 584 | 381 | 16 | 53 | 613 | 84 | 636 | 9.05e-49 | 184 |
Msa0027000 | AT2G32250.8 | 24.472 | 568 | 359 | 11 | 60 | 615 | 3 | 512 | 1.02e-48 | 184 |
Msa0027000 | AT2G32250.7 | 24.472 | 568 | 359 | 11 | 60 | 615 | 3 | 512 | 1.32e-48 | 184 |
Msa0027000 | AT4G38170.1 | 27.027 | 481 | 318 | 10 | 267 | 726 | 45 | 513 | 6.67e-46 | 173 |
Msa0027000 | AT1G80010.1 | 24.876 | 603 | 372 | 18 | 54 | 613 | 95 | 659 | 9.06e-46 | 175 |
Msa0027000 | AT4G19990.1 | 26.248 | 541 | 337 | 12 | 86 | 614 | 11 | 501 | 9.22e-45 | 172 |
Msa0027000 | AT3G59470.3 | 37.273 | 110 | 61 | 3 | 54 | 163 | 70 | 171 | 1.66e-13 | 71.6 |
Msa0027000 | AT3G59470.1 | 37.273 | 110 | 61 | 3 | 54 | 163 | 70 | 171 | 1.66e-13 | 71.6 |
Msa0027000 | AT3G59470.2 | 37.273 | 110 | 61 | 3 | 54 | 163 | 82 | 183 | 2.15e-13 | 71.6 |
Find 110 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAAGATAATTTGATTTATT+TGG | 0.093166 | 1_1:+51198596 | Msa0027000:CDS |
TCTACTCTCATCGTCAATTT+TGG | 0.121901 | 1_1:+51197793 | Msa0027000:CDS |
TACAGGTAACTTACCATTTC+TGG | 0.139830 | 1_1:+51197021 | Msa0027000:CDS |
TTGACTATATGACTGCATTT+TGG | 0.141368 | 1_1:-51198432 | Msa0026990:intron |
ACATCATAACCATCATTATT+TGG | 0.153794 | 1_1:-51198639 | Msa0026990:intron |
CTAAAGGCTTTGAAGGAAAA+TGG | 0.187093 | 1_1:+51196819 | Msa0027000:CDS |
TTCATTCAGATGGGCTTTAA+AGG | 0.197395 | 1_1:+51197375 | Msa0027000:CDS |
ACAAACTAGAGCATATTATT+TGG | 0.199763 | 1_1:+51197182 | Msa0027000:CDS |
ACAATCAGAACTTACTTATT+AGG | 0.237831 | 1_1:-51198840 | Msa0026990:intron |
TGAACGAGAATGGGAATTAA+TGG | 0.241089 | 1_1:+51197728 | Msa0027000:CDS |
ATCAAATTATCTTGACTTGC+AGG | 0.274591 | 1_1:-51198588 | Msa0026990:intron |
GAGCATATTATTTGGGCATT+TGG | 0.276151 | 1_1:+51197190 | Msa0027000:CDS |
ATTCGAGCATATGAATCTTT+TGG | 0.301566 | 1_1:+51197220 | Msa0027000:CDS |
TTGTCCTAATTAGAGAATTA+TGG | 0.303893 | 1_1:-51198089 | Msa0026990:intron |
AGTACCATAATTCTCTAATT+AGG | 0.305229 | 1_1:+51198085 | Msa0027000:CDS |
TGATTGGTTCCGCCGCAATT+TGG | 0.306685 | 1_1:-51198759 | Msa0026990:intron |
GTGACAACGTCGAAGCTTCT+TGG | 0.321956 | 1_1:-51198733 | Msa0026990:intron |
AATCATCTATAGATTCTAAA+TGG | 0.332504 | 1_1:-51197704 | Msa0026990:intron |
GAATTAATGGTTGCACAATT+TGG | 0.333830 | 1_1:+51197741 | Msa0027000:CDS |
TTTGCAGCATGTTCCTCAAT+AGG | 0.334456 | 1_1:-51198117 | Msa0026990:intron |
GCAGCTTCAACTCCACCTTT+TGG | 0.341287 | 1_1:-51198711 | Msa0026990:intron |
AAATTCCTCCGACAGATAAA+AGG | 0.354413 | 1_1:+51198561 | Msa0027000:CDS |
CATATAGTCAAATGCAATAA+TGG | 0.354919 | 1_1:+51198444 | Msa0027000:CDS |
ACTTTAAACAGGAGTTTCAT+AGG | 0.356852 | 1_1:+51197676 | Msa0027000:CDS |
CTAATATCCTTCTCCAGAAA+TGG | 0.365717 | 1_1:-51197034 | Msa0026990:intron |
TGCCACTTGGAATGTGGATT+GGG | 0.366378 | 1_1:+51197290 | Msa0027000:CDS |
CAAACTAGAGCATATTATTT+GGG | 0.370107 | 1_1:+51197183 | Msa0027000:CDS |
TCAGTCTCTAATTCGATGTT+TGG | 0.382120 | 1_1:+51198482 | Msa0027000:CDS |
TTGGTTTCTAAAGGCTTTGA+AGG | 0.384106 | 1_1:+51196812 | Msa0027000:CDS |
GAGATATATTGACTTTAAAC+AGG | 0.399521 | 1_1:+51197665 | Msa0027000:CDS |
TTTGCTGGGATGACGACAAC+TGG | 0.403764 | 1_1:+51197843 | Msa0027000:CDS |
ATGTAAAAGTCTGAAAGATA+TGG | 0.416400 | 1_1:+51197120 | Msa0027000:CDS |
TAAAGGCTTTGAAGGAAAAT+GGG | 0.419353 | 1_1:+51196820 | Msa0027000:CDS |
TCATGAACAGTACTAGTTCC+AGG | 0.424449 | 1_1:-51196524 | Msa0026990:intron |
AAATACATTGTAAAATTCAT+AGG | 0.433492 | 1_1:-51196591 | Msa0026990:intron |
TTTGGAACATCGGGTACATT+GGG | 0.437206 | 1_1:-51198621 | Msa0026990:intron |
TTGGGGCCTAGCTTATTTGA+AGG | 0.438270 | 1_1:+51197812 | Msa0027000:CDS |
GCAAAGTTGTTGGTTTCTAA+AGG | 0.440350 | 1_1:+51196803 | Msa0027000:CDS |
GAACTAGTACTGTTCATGAA+TGG | 0.450674 | 1_1:+51196528 | Msa0027000:CDS |
CCATGAGTTATTAGATGATA+AGG | 0.455510 | 1_1:+51196871 | Msa0027000:CDS |
TGGATTAACTCAAACGCATA+TGG | 0.457746 | 1_1:-51198150 | Msa0026990:intron |
CCATCATTATTTGGAACATC+GGG | 0.457944 | 1_1:-51198630 | Msa0026990:intron |
ACAATTCCGCGAGTCATGAT+TGG | 0.463296 | 1_1:-51198775 | Msa0026990:intron |
TTGTTGCAAAGTTGTCTAGT+TGG | 0.463573 | 1_1:+51197622 | Msa0027000:CDS |
TAGACGACCACCATCAACTT+TGG | 0.465253 | 1_1:-51198244 | Msa0026990:intron |
TAGTTGTAGCGCAAAGTTGT+TGG | 0.465803 | 1_1:+51196793 | Msa0027000:CDS |
CTTTCTCTTCTCCATCGAAA+AGG | 0.467284 | 1_1:-51198399 | Msa0026990:intron |
AGAAGAAATCTTCATTCAGA+TGG | 0.469575 | 1_1:+51197365 | Msa0027000:CDS |
AACTAGTACTGTTCATGAAT+GGG | 0.472834 | 1_1:+51196529 | Msa0027000:CDS |
AAATATGCTGCCATTCATAC+AGG | 0.475969 | 1_1:+51198195 | Msa0027000:CDS |
TTAGAGAAATCAATAGATAC+AGG | 0.477570 | 1_1:+51197004 | Msa0027000:CDS |
CGACATCATACCAAAGTTGA+TGG | 0.478069 | 1_1:+51198234 | Msa0027000:CDS |
ATTTGGAACATCGGGTACAT+TGG | 0.482649 | 1_1:-51198622 | Msa0026990:intron |
TAAGAAATAGTGCTAGTGAT+TGG | 0.489143 | 1_1:+51196408 | Msa0027000:CDS |
ATAATTGTTACCTGTATGAA+TGG | 0.491038 | 1_1:-51198205 | Msa0026990:intron |
AAATCCAAAGGTCGGCCAAA+AGG | 0.496241 | 1_1:+51198681 | Msa0027000:CDS |
TGGATAGGATCACAAAGGGT+TGG | 0.496334 | 1_1:+51198927 | Msa0027000:intron |
CCAAAAGGTTCAAGGCCAAA+AGG | 0.499841 | 1_1:+51198696 | Msa0027000:CDS |
GAGTCTGAAGATAATCCATC+AGG | 0.500480 | 1_1:+51196671 | Msa0027000:CDS |
ATATTATTGTTATCAAAAGC+AGG | 0.503849 | 1_1:+51196947 | Msa0027000:CDS |
ATGCCACTTGGAATGTGGAT+TGG | 0.511770 | 1_1:+51197289 | Msa0027000:CDS |
ACCATCATTATTTGGAACAT+CGG | 0.512682 | 1_1:-51198631 | Msa0026990:intron |
TGATCCGTAAGGATTGTTTG+TGG | 0.512910 | 1_1:-51197528 | Msa0026990:intron |
GAATTTGTTTGTCATCGAGC+TGG | 0.517742 | 1_1:+51196707 | Msa0027000:CDS |
CCAGGCTGAGGTTCTTGATG+TGG | 0.518896 | 1_1:-51196506 | Msa0026990:intron |
TGGATTGGGGTTGATAATCA+TGG | 0.518964 | 1_1:+51197304 | Msa0027000:CDS |
CCCGATGTTCCAAATAATGA+TGG | 0.520874 | 1_1:+51198630 | Msa0027000:CDS |
ATTTGGCAATTCCTTTGCAA+TGG | 0.524413 | 1_1:-51197571 | Msa0026990:intron |
CATCTAATAACTCATGGTTG+TGG | 0.528510 | 1_1:-51196865 | Msa0026990:intron |
TAGACAATTCAATCTCATGT+TGG | 0.528559 | 1_1:-51198170 | Msa0026990:intron |
CTTTAAACAGGAGTTTCATA+GGG | 0.528837 | 1_1:+51197677 | Msa0027000:CDS |
AAGGTCGGCCAAAAGGTTCA+AGG | 0.530766 | 1_1:+51198688 | Msa0027000:CDS |
ACTCTCATTATGAGACTCAC+AGG | 0.531933 | 1_1:-51196974 | Msa0026990:intron |
TAACTTACCATTTCTGGAGA+AGG | 0.534997 | 1_1:+51197027 | Msa0027000:CDS |
TTCCAAGTGGCATATCATAA+CGG | 0.535191 | 1_1:-51197279 | Msa0026990:intron |
AATAGTCCTTCAAATAAGCT+AGG | 0.536211 | 1_1:-51197818 | Msa0026990:intron |
ATGGTGGTCGTCTAGTAAGC+TGG | 0.537867 | 1_1:+51198253 | Msa0027000:CDS |
CCACATCAAGAACCTCAGCC+TGG | 0.539330 | 1_1:+51196506 | Msa0027000:CDS |
CCTTATCATCTAATAACTCA+TGG | 0.545462 | 1_1:-51196871 | Msa0026990:intron |
ATATCCACAAACAATCCTTA+CGG | 0.547845 | 1_1:+51197524 | Msa0027000:CDS |
AACCGTTATGATATGCCACT+TGG | 0.555362 | 1_1:+51197277 | Msa0027000:CDS |
CGTTGTCACGTTCCAAATTG+CGG | 0.556435 | 1_1:+51198747 | Msa0027000:CDS |
TTCTTGGATAGGATCACAAA+GGG | 0.557354 | 1_1:+51198923 | Msa0027000:intron |
GAAGAAATCTTCATTCAGAT+GGG | 0.559436 | 1_1:+51197366 | Msa0027000:CDS |
ATTGGGATGTTACGATAAGC+GGG | 0.561005 | 1_1:-51196908 | Msa0026990:intron |
TAGACATCAAGCAGGAGAAG+AGG | 0.565504 | 1_1:+51198047 | Msa0027000:CDS |
GTCAAAATTAGACATCAAGC+AGG | 0.568777 | 1_1:+51198039 | Msa0027000:CDS |
TGCACAATTTGGTCTAAGCA+AGG | 0.581324 | 1_1:+51197752 | Msa0027000:CDS |
TTCATCATCTTCATATGTAG+AGG | 0.581729 | 1_1:-51196456 | Msa0026990:intron |
TTGTTTCAAAATCCAAAGGT+CGG | 0.583293 | 1_1:+51198673 | Msa0027000:CDS |
CCTGTTGTTTCAAAATCCAA+AGG | 0.583885 | 1_1:+51198669 | Msa0027000:CDS |
AATTGGGATGTTACGATAAG+CGG | 0.587373 | 1_1:-51196909 | Msa0026990:intron |
ATCATTAAAGACAAAAGAGA+GGG | 0.596933 | 1_1:+51198512 | Msa0027000:CDS |
GTGCAAGATCTTGATCCGTA+AGG | 0.602894 | 1_1:-51197539 | Msa0026990:intron |
ATGATATGCCACTTGGAATG+TGG | 0.611489 | 1_1:+51197284 | Msa0027000:CDS |
ACAGTACTAGTTCCAGGCTG+AGG | 0.619979 | 1_1:-51196518 | Msa0026990:intron |
TGAGTTATTAGATGATAAGG+AGG | 0.622448 | 1_1:+51196874 | Msa0027000:CDS |
AGGCTTTGAAGGAAAATGGG+TGG | 0.631084 | 1_1:+51196823 | Msa0027000:CDS |
AAAGGTTCAAGGCCAAAAGG+TGG | 0.631199 | 1_1:+51198699 | Msa0027000:CDS |
AATCATTAAAGACAAAAGAG+AGG | 0.632966 | 1_1:+51198511 | Msa0027000:CDS |
TCAATATATCTCGAACCCAA+CGG | 0.634921 | 1_1:-51197654 | Msa0026990:intron |
TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 1_1:-51198828 | Msa0026990:intron |
GCCACTTGGAATGTGGATTG+GGG | 0.646236 | 1_1:+51197291 | Msa0027000:CDS |
GTTCTTGGATAGGATCACAA+AGG | 0.649286 | 1_1:+51198922 | Msa0027000:intron |
ACCCCAATCCACATTCCAAG+TGG | 0.654914 | 1_1:-51197292 | Msa0026990:intron |
ACTTACAGAAGCCATTGCAA+AGG | 0.657210 | 1_1:+51197560 | Msa0027000:CDS |
GCGGAACCAATCATGACTCG+CGG | 0.676119 | 1_1:+51198769 | Msa0027000:CDS |
CTCTCATTATGAGACTCACA+GGG | 0.677592 | 1_1:-51196973 | Msa0026990:intron |
CATCATACCAAAGTTGATGG+TGG | 0.683172 | 1_1:+51198237 | Msa0027000:CDS |
TGTCACGTTCCAAATTGCGG+CGG | 0.703136 | 1_1:+51198750 | Msa0027000:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTAACTATTTGATTTTA+TGG | + | chr1_1:51198900-51198919 | Msa0027000:intron | 10.0% |
!! | AAATACATTGTAAAATTCAT+AGG | - | chr1_1:51196594-51196613 | Msa0026990:intron | 15.0% |
!!! | TTATTTTAGTAACTTGTTAT+AGG | + | chr1_1:51197950-51197969 | Msa0027000:intron | 15.0% |
!! | TAATTAATATATTTGTGAGT+AGG | + | chr1_1:51198005-51198024 | Msa0027000:intron | 15.0% |
!!! | TCAAGATAATTTGATTTATT+TGG | + | chr1_1:51198596-51198615 | Msa0027000:CDS | 15.0% |
!!! | TCAATATTTTTCTTTTTGTT+TGG | - | chr1_1:51198801-51198820 | Msa0026990:intron | 15.0% |
!! | TTAAAAATTTGTCCTTCAAA+AGG | - | chr1_1:51196557-51196576 | Msa0026990:intron | 20.0% |
!! | ATATTATTGTTATCAAAAGC+AGG | + | chr1_1:51196947-51196966 | Msa0027000:CDS | 20.0% |
!!! | TAATCATTTTTTTGTTAGAC+AGG | - | chr1_1:51197433-51197452 | Msa0026990:intron | 20.0% |
!! | AATCATCTATAGATTCTAAA+TGG | - | chr1_1:51197707-51197726 | Msa0026990:intron | 20.0% |
! | AATGTATTTGCACGAAAAAA+TGG | + | chr1_1:51196605-51196624 | Msa0027000:CDS | 25.0% |
!!! | GAAAAAATGGATTTTCGATT+AGG | + | chr1_1:51196618-51196637 | Msa0027000:CDS | 25.0% |
! | TTGATGAAGTGAAAAATCAA+AGG | + | chr1_1:51196750-51196769 | Msa0027000:CDS | 25.0% |
! | AAGTGAAAAATCAAAGGAAA+CGG | + | chr1_1:51196756-51196775 | Msa0027000:CDS | 25.0% |
! | TTAGAGAAATCAATAGATAC+AGG | + | chr1_1:51197004-51197023 | Msa0027000:CDS | 25.0% |
!! | AATTTTATTCAATCACACAG+TGG | + | chr1_1:51197058-51197077 | Msa0027000:CDS | 25.0% |
! | ATGTAAAAGTCTGAAAGATA+TGG | + | chr1_1:51197120-51197139 | Msa0027000:CDS | 25.0% |
! | ACAAACTAGAGCATATTATT+TGG | + | chr1_1:51197182-51197201 | Msa0027000:CDS | 25.0% |
! | CAAACTAGAGCATATTATTT+GGG | + | chr1_1:51197183-51197202 | Msa0027000:CDS | 25.0% |
!! | CATGGAAATTCAATTTTCTT+TGG | + | chr1_1:51197322-51197341 | Msa0027000:CDS | 25.0% |
!! | AGTTTTCTAACTTTTGTTGA+AGG | + | chr1_1:51197498-51197517 | Msa0027000:CDS | 25.0% |
!! | CAAAATGCATGTTTTGTATT+TGG | - | chr1_1:51197591-51197610 | Msa0026990:intron | 25.0% |
!!! | GAGATATATTGACTTTAAAC+AGG | + | chr1_1:51197665-51197684 | Msa0027000:CDS | 25.0% |
!!! | TTTGACTGATTTTGTAAATC+AGG | + | chr1_1:51197920-51197939 | Msa0027000:CDS | 25.0% |
! | TAATATATTTGTGAGTAGGT+TGG | + | chr1_1:51198009-51198028 | Msa0027000:intron | 25.0% |
! | AGTACCATAATTCTCTAATT+AGG | + | chr1_1:51198085-51198104 | Msa0027000:CDS | 25.0% |
! | TTGTCCTAATTAGAGAATTA+TGG | - | chr1_1:51198092-51198111 | Msa0026990:intron | 25.0% |
! | ATAATTGTTACCTGTATGAA+TGG | - | chr1_1:51198208-51198227 | Msa0026990:intron | 25.0% |
!!! | TGTAAAGAATTTGAGTTTTC+TGG | + | chr1_1:51198306-51198325 | Msa0027000:CDS | 25.0% |
!!! | GAAAAGGAAGATATTTTGAT+GGG | - | chr1_1:51198386-51198405 | Msa0026990:intron | 25.0% |
! | CATATAGTCAAATGCAATAA+TGG | + | chr1_1:51198444-51198463 | Msa0027000:CDS | 25.0% |
! | AATCATTAAAGACAAAAGAG+AGG | + | chr1_1:51198511-51198530 | Msa0027000:CDS | 25.0% |
! | ATCATTAAAGACAAAAGAGA+GGG | + | chr1_1:51198512-51198531 | Msa0027000:CDS | 25.0% |
! | ACATCATAACCATCATTATT+TGG | - | chr1_1:51198642-51198661 | Msa0026990:intron | 25.0% |
! | ACAATCAGAACTTACTTATT+AGG | - | chr1_1:51198843-51198862 | Msa0026990:intron | 25.0% |
!!! | CTATTTGATTTTATGGTTCT+TGG | + | chr1_1:51198907-51198926 | Msa0027000:intron | 25.0% |
TAAGAAATAGTGCTAGTGAT+TGG | + | chr1_1:51196408-51196427 | Msa0027000:CDS | 30.0% | |
TTCATCATCTTCATATGTAG+AGG | - | chr1_1:51196459-51196478 | Msa0026990:intron | 30.0% | |
AACTAGTACTGTTCATGAAT+GGG | + | chr1_1:51196529-51196548 | Msa0027000:CDS | 30.0% | |
! | TCTCTTTTATAAACTCCTGA+TGG | - | chr1_1:51196689-51196708 | Msa0026990:intron | 30.0% |
!! | TAAAGGCTTTGAAGGAAAAT+GGG | + | chr1_1:51196820-51196839 | Msa0027000:CDS | 30.0% |
CCTTATCATCTAATAACTCA+TGG | - | chr1_1:51196874-51196893 | Msa0026990:intron | 30.0% | |
CCATGAGTTATTAGATGATA+AGG | + | chr1_1:51196871-51196890 | Msa0027000:CDS | 30.0% | |
TGAGTTATTAGATGATAAGG+AGG | + | chr1_1:51196874-51196893 | Msa0027000:CDS | 30.0% | |
!! | TACGATTTTGATCGTCAATT+GGG | - | chr1_1:51196928-51196947 | Msa0026990:intron | 30.0% |
!! | ATACGATTTTGATCGTCAAT+TGG | - | chr1_1:51196929-51196948 | Msa0026990:intron | 30.0% |
! | ATTCGAGCATATGAATCTTT+TGG | + | chr1_1:51197220-51197239 | Msa0027000:CDS | 30.0% |
!!! | ATATGAATCTTTTGGTGATG+TGG | + | chr1_1:51197228-51197247 | Msa0027000:CDS | 30.0% |
AGAAGAAATCTTCATTCAGA+TGG | + | chr1_1:51197365-51197384 | Msa0027000:CDS | 30.0% | |
GAAGAAATCTTCATTCAGAT+GGG | + | chr1_1:51197366-51197385 | Msa0027000:CDS | 30.0% | |
ATATCCACAAACAATCCTTA+CGG | + | chr1_1:51197524-51197543 | Msa0027000:CDS | 30.0% | |
! | CAAAACATGCATTTTGCATA+TGG | + | chr1_1:51197595-51197614 | Msa0027000:CDS | 30.0% |
ACTTTAAACAGGAGTTTCAT+AGG | + | chr1_1:51197676-51197695 | Msa0027000:CDS | 30.0% | |
CTTTAAACAGGAGTTTCATA+GGG | + | chr1_1:51197677-51197696 | Msa0027000:CDS | 30.0% | |
! | TAGATGATTTTGAACGAGAA+TGG | + | chr1_1:51197718-51197737 | Msa0027000:CDS | 30.0% |
! | AGATGATTTTGAACGAGAAT+GGG | + | chr1_1:51197719-51197738 | Msa0027000:CDS | 30.0% |
GAATTAATGGTTGCACAATT+TGG | + | chr1_1:51197741-51197760 | Msa0027000:CDS | 30.0% | |
AATAGTCCTTCAAATAAGCT+AGG | - | chr1_1:51197821-51197840 | Msa0026990:intron | 30.0% | |
!!! | TTGAAGGACTATTTTTTTGC+TGG | + | chr1_1:51197828-51197847 | Msa0027000:CDS | 30.0% |
!!! | TGAAGGACTATTTTTTTGCT+GGG | + | chr1_1:51197829-51197848 | Msa0027000:CDS | 30.0% |
! | GTTATAGGTACGTTGTATTT+TGG | + | chr1_1:51197965-51197984 | Msa0027000:intron | 30.0% |
TAGACAATTCAATCTCATGT+TGG | - | chr1_1:51198173-51198192 | Msa0026990:intron | 30.0% | |
!! | CGAAAAGGAAGATATTTTGA+TGG | - | chr1_1:51198387-51198406 | Msa0026990:intron | 30.0% |
! | CAAAATATCTTCCTTTTCGA+TGG | + | chr1_1:51198388-51198407 | Msa0027000:CDS | 30.0% |
! | TGACTATATGACTGCATTTT+GGG | - | chr1_1:51198434-51198453 | Msa0026990:intron | 30.0% |
! | TTGACTATATGACTGCATTT+TGG | - | chr1_1:51198435-51198454 | Msa0026990:intron | 30.0% |
!! | ATCAAATTATCTTGACTTGC+AGG | - | chr1_1:51198591-51198610 | Msa0026990:intron | 30.0% |
! | ACCATCATTATTTGGAACAT+CGG | - | chr1_1:51198634-51198653 | Msa0026990:intron | 30.0% |
TTGTTTCAAAATCCAAAGGT+CGG | + | chr1_1:51198673-51198692 | Msa0027000:CDS | 30.0% | |
TACTTATTAGGAGATTGAGA+AGG | - | chr1_1:51198831-51198850 | Msa0026990:intron | 30.0% | |
! | TGATTTTATGGTTCTTGGAT+AGG | + | chr1_1:51198912-51198931 | Msa0027000:intron | 30.0% |
GAACTAGTACTGTTCATGAA+TGG | + | chr1_1:51196528-51196547 | Msa0027000:CDS | 35.0% | |
!! | GCAAAGTTGTTGGTTTCTAA+AGG | + | chr1_1:51196803-51196822 | Msa0027000:CDS | 35.0% |
! | TTGGTTTCTAAAGGCTTTGA+AGG | + | chr1_1:51196812-51196831 | Msa0027000:CDS | 35.0% |
!! | CTAAAGGCTTTGAAGGAAAA+TGG | + | chr1_1:51196819-51196838 | Msa0027000:CDS | 35.0% |
CATCTAATAACTCATGGTTG+TGG | - | chr1_1:51196868-51196887 | Msa0026990:intron | 35.0% | |
AATTGGGATGTTACGATAAG+CGG | - | chr1_1:51196912-51196931 | Msa0026990:intron | 35.0% | |
TACAGGTAACTTACCATTTC+TGG | + | chr1_1:51197021-51197040 | Msa0027000:CDS | 35.0% | |
! | TAACTTACCATTTCTGGAGA+AGG | + | chr1_1:51197027-51197046 | Msa0027000:CDS | 35.0% |
CTAATATCCTTCTCCAGAAA+TGG | - | chr1_1:51197037-51197056 | Msa0026990:intron | 35.0% | |
GAGCATATTATTTGGGCATT+TGG | + | chr1_1:51197190-51197209 | Msa0027000:CDS | 35.0% | |
TTCCAAGTGGCATATCATAA+CGG | - | chr1_1:51197282-51197301 | Msa0026990:intron | 35.0% | |
! | TTCATTCAGATGGGCTTTAA+AGG | + | chr1_1:51197375-51197394 | Msa0027000:CDS | 35.0% |
ATTTGGCAATTCCTTTGCAA+TGG | - | chr1_1:51197574-51197593 | Msa0026990:intron | 35.0% | |
TTGTTGCAAAGTTGTCTAGT+TGG | + | chr1_1:51197622-51197641 | Msa0027000:CDS | 35.0% | |
!!! | TAGTTGGTTTTCTTTTCCGT+TGG | + | chr1_1:51197638-51197657 | Msa0027000:CDS | 35.0% |
!!! | AGTTGGTTTTCTTTTCCGTT+GGG | + | chr1_1:51197639-51197658 | Msa0027000:CDS | 35.0% |
TCAATATATCTCGAACCCAA+CGG | - | chr1_1:51197657-51197676 | Msa0026990:intron | 35.0% | |
TGAACGAGAATGGGAATTAA+TGG | + | chr1_1:51197728-51197747 | Msa0027000:CDS | 35.0% | |
! | TCTACTCTCATCGTCAATTT+TGG | + | chr1_1:51197793-51197812 | Msa0027000:CDS | 35.0% |
! | CTACTCTCATCGTCAATTTT+GGG | + | chr1_1:51197794-51197813 | Msa0027000:CDS | 35.0% |
! | TACTCTCATCGTCAATTTTG+GGG | + | chr1_1:51197795-51197814 | Msa0027000:CDS | 35.0% |
GTCAAAATTAGACATCAAGC+AGG | + | chr1_1:51198039-51198058 | Msa0027000:CDS | 35.0% | |
! | TAGGACAACTTTTCCTATTG+AGG | + | chr1_1:51198104-51198123 | Msa0027000:CDS | 35.0% |
TGGATTAACTCAAACGCATA+TGG | - | chr1_1:51198153-51198172 | Msa0026990:intron | 35.0% | |
AAATATGCTGCCATTCATAC+AGG | + | chr1_1:51198195-51198214 | Msa0027000:CDS | 35.0% | |
! | TTTTACAAGTAGCACTCGAA+TGG | - | chr1_1:51198349-51198368 | Msa0026990:intron | 35.0% |
TCAGTCTCTAATTCGATGTT+TGG | + | chr1_1:51198482-51198501 | Msa0027000:CDS | 35.0% | |
AAATTCCTCCGACAGATAAA+AGG | + | chr1_1:51198561-51198580 | Msa0027000:CDS | 35.0% | |
! | CCATCATTATTTGGAACATC+GGG | - | chr1_1:51198633-51198652 | Msa0026990:intron | 35.0% |
!!! | CCTTTGGATTTTGAAACAAC+AGG | - | chr1_1:51198672-51198691 | Msa0026990:intron | 35.0% |
!! | CCTGTTGTTTCAAAATCCAA+AGG | + | chr1_1:51198669-51198688 | Msa0027000:CDS | 35.0% |
TTCTTGGATAGGATCACAAA+GGG | + | chr1_1:51198923-51198942 | Msa0027000:intron | 35.0% | |
TCATGAACAGTACTAGTTCC+AGG | - | chr1_1:51196527-51196546 | Msa0026990:intron | 40.0% | |
!! | CATGAATGGGTTCCTTTTGA+AGG | + | chr1_1:51196542-51196561 | Msa0027000:CDS | 40.0% |
GAGTCTGAAGATAATCCATC+AGG | + | chr1_1:51196671-51196690 | Msa0027000:CDS | 40.0% | |
! | GAATTTGTTTGTCATCGAGC+TGG | + | chr1_1:51196707-51196726 | Msa0027000:CDS | 40.0% |
TAGTTGTAGCGCAAAGTTGT+TGG | + | chr1_1:51196793-51196812 | Msa0027000:CDS | 40.0% | |
ATTGGGATGTTACGATAAGC+GGG | - | chr1_1:51196911-51196930 | Msa0026990:intron | 40.0% | |
CTCTCATTATGAGACTCACA+GGG | - | chr1_1:51196976-51196995 | Msa0026990:intron | 40.0% | |
ACTCTCATTATGAGACTCAC+AGG | - | chr1_1:51196977-51196996 | Msa0026990:intron | 40.0% | |
AACCGTTATGATATGCCACT+TGG | + | chr1_1:51197277-51197296 | Msa0027000:CDS | 40.0% | |
! | ATGATATGCCACTTGGAATG+TGG | + | chr1_1:51197284-51197303 | Msa0027000:CDS | 40.0% |
!! | TGGATTGGGGTTGATAATCA+TGG | + | chr1_1:51197304-51197323 | Msa0027000:CDS | 40.0% |
TGATCCGTAAGGATTGTTTG+TGG | - | chr1_1:51197531-51197550 | Msa0026990:intron | 40.0% | |
ACTTACAGAAGCCATTGCAA+AGG | + | chr1_1:51197560-51197579 | Msa0027000:CDS | 40.0% | |
TGCACAATTTGGTCTAAGCA+AGG | + | chr1_1:51197752-51197771 | Msa0027000:CDS | 40.0% | |
TTTGCAGCATGTTCCTCAAT+AGG | - | chr1_1:51198120-51198139 | Msa0026990:intron | 40.0% | |
CGACATCATACCAAAGTTGA+TGG | + | chr1_1:51198234-51198253 | Msa0027000:CDS | 40.0% | |
!! | CATCATACCAAAGTTGATGG+TGG | + | chr1_1:51198237-51198256 | Msa0027000:CDS | 40.0% |
CTTTCTCTTCTCCATCGAAA+AGG | - | chr1_1:51198402-51198421 | Msa0026990:intron | 40.0% | |
! | TTTGGAACATCGGGTACATT+GGG | - | chr1_1:51198624-51198643 | Msa0026990:intron | 40.0% |
! | ATTTGGAACATCGGGTACAT+TGG | - | chr1_1:51198625-51198644 | Msa0026990:intron | 40.0% |
CCCGATGTTCCAAATAATGA+TGG | + | chr1_1:51198630-51198649 | Msa0027000:CDS | 40.0% | |
GTTCTTGGATAGGATCACAA+AGG | + | chr1_1:51198922-51198941 | Msa0027000:intron | 40.0% | |
!! | AGGCTTTGAAGGAAAATGGG+TGG | + | chr1_1:51196823-51196842 | Msa0027000:CDS | 45.0% |
! | ATGCCACTTGGAATGTGGAT+TGG | + | chr1_1:51197289-51197308 | Msa0027000:CDS | 45.0% |
! | TGCCACTTGGAATGTGGATT+GGG | + | chr1_1:51197290-51197309 | Msa0027000:CDS | 45.0% |
GTGCAAGATCTTGATCCGTA+AGG | - | chr1_1:51197542-51197561 | Msa0026990:intron | 45.0% | |
TTGGGGCCTAGCTTATTTGA+AGG | + | chr1_1:51197812-51197831 | Msa0027000:CDS | 45.0% | |
TAGACATCAAGCAGGAGAAG+AGG | + | chr1_1:51198047-51198066 | Msa0027000:CDS | 45.0% | |
TAGACGACCACCATCAACTT+TGG | - | chr1_1:51198247-51198266 | Msa0026990:intron | 45.0% | |
! | CAGGCATGCCTTTTATCTGT+CGG | - | chr1_1:51198572-51198591 | Msa0026990:intron | 45.0% |
AAATCCAAAGGTCGGCCAAA+AGG | + | chr1_1:51198681-51198700 | Msa0027000:CDS | 45.0% | |
!!! | CCTTTTGGCCTTGAACCTTT+TGG | - | chr1_1:51198699-51198718 | Msa0026990:intron | 45.0% |
CCAAAAGGTTCAAGGCCAAA+AGG | + | chr1_1:51198696-51198715 | Msa0027000:CDS | 45.0% | |
AAAGGTTCAAGGCCAAAAGG+TGG | + | chr1_1:51198699-51198718 | Msa0027000:CDS | 45.0% | |
CGTTGTCACGTTCCAAATTG+CGG | + | chr1_1:51198747-51198766 | Msa0027000:CDS | 45.0% | |
ACAATTCCGCGAGTCATGAT+TGG | - | chr1_1:51198778-51198797 | Msa0026990:intron | 45.0% | |
TGGATAGGATCACAAAGGGT+TGG | + | chr1_1:51198927-51198946 | Msa0027000:intron | 45.0% | |
ACAGTACTAGTTCCAGGCTG+AGG | - | chr1_1:51196521-51196540 | Msa0026990:intron | 50.0% | |
! | GCCACTTGGAATGTGGATTG+GGG | + | chr1_1:51197291-51197310 | Msa0027000:CDS | 50.0% |
ACCCCAATCCACATTCCAAG+TGG | - | chr1_1:51197295-51197314 | Msa0026990:intron | 50.0% | |
TTTGCTGGGATGACGACAAC+TGG | + | chr1_1:51197843-51197862 | Msa0027000:CDS | 50.0% | |
ATGGTGGTCGTCTAGTAAGC+TGG | + | chr1_1:51198253-51198272 | Msa0027000:CDS | 50.0% | |
! | GCATGCCTTTTATCTGTCGG+AGG | - | chr1_1:51198569-51198588 | Msa0026990:intron | 50.0% |
! | TGAACCTTTTGGCCGACCTT+TGG | - | chr1_1:51198688-51198707 | Msa0026990:intron | 50.0% |
AAGGTCGGCCAAAAGGTTCA+AGG | + | chr1_1:51198688-51198707 | Msa0027000:CDS | 50.0% | |
! | GCAGCTTCAACTCCACCTTT+TGG | - | chr1_1:51198714-51198733 | Msa0026990:intron | 50.0% |
GTGACAACGTCGAAGCTTCT+TGG | - | chr1_1:51198736-51198755 | Msa0026990:intron | 50.0% | |
TGTCACGTTCCAAATTGCGG+CGG | + | chr1_1:51198750-51198769 | Msa0027000:CDS | 50.0% | |
! | TGATTGGTTCCGCCGCAATT+TGG | - | chr1_1:51198762-51198781 | Msa0026990:intron | 50.0% |
CCAGGCTGAGGTTCTTGATG+TGG | - | chr1_1:51196509-51196528 | Msa0026990:intron | 55.0% | |
CCACATCAAGAACCTCAGCC+TGG | + | chr1_1:51196506-51196525 | Msa0027000:CDS | 55.0% | |
GCGGAACCAATCATGACTCG+CGG | + | chr1_1:51198769-51198788 | Msa0027000:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 51196395 | 51198976 | 51196395 | ID=Msa0027000;Name=Msa0027000 |
chr1_1 | mRNA | 51196395 | 51198976 | 51196395 | ID=Msa0027000-mRNA-1;Parent=Msa0027000;Name=Msa0027000-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.33|0|1|1|1|4|0|769 |
chr1_1 | exon | 51196395 | 51197396 | 51196395 | ID=Msa0027000-mRNA-1:exon:14919;Parent=Msa0027000-mRNA-1 |
chr1_1 | exon | 51197498 | 51197941 | 51197498 | ID=Msa0027000-mRNA-1:exon:14920;Parent=Msa0027000-mRNA-1 |
chr1_1 | exon | 51198027 | 51198847 | 51198027 | ID=Msa0027000-mRNA-1:exon:14921;Parent=Msa0027000-mRNA-1 |
chr1_1 | exon | 51198934 | 51198976 | 51198934 | ID=Msa0027000-mRNA-1:exon:14922;Parent=Msa0027000-mRNA-1 |
chr1_1 | CDS | 51196395 | 51197396 | 51196395 | ID=Msa0027000-mRNA-1:cds;Parent=Msa0027000-mRNA-1 |
chr1_1 | CDS | 51197498 | 51197941 | 51197498 | ID=Msa0027000-mRNA-1:cds;Parent=Msa0027000-mRNA-1 |
chr1_1 | CDS | 51198027 | 51198847 | 51198027 | ID=Msa0027000-mRNA-1:cds;Parent=Msa0027000-mRNA-1 |
chr1_1 | CDS | 51198934 | 51198976 | 51198934 | ID=Msa0027000-mRNA-1:cds;Parent=Msa0027000-mRNA-1 |
Gene Sequence |
Protein sequence |