Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027870 | XP_013468532.1 | 91.787 | 207 | 14 | 3 | 1 | 204 | 1 | 207 | 8.16e-135 | 386 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027870 | sp|Q9SLB7|LBD16_ARATH | 47.368 | 247 | 83 | 7 | 1 | 202 | 1 | 245 | 2.76e-62 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0027870 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027870 | MtrunA17_Chr1g0184281 | 91.787 | 207 | 14 | 3 | 1 | 204 | 1 | 207 | 7.50e-139 | 386 |
| Msa0027870 | MtrunA17_Chr7g0260971 | 59.459 | 222 | 66 | 6 | 1 | 202 | 1 | 218 | 1.54e-79 | 236 |
| Msa0027870 | MtrunA17_Chr7g0261031 | 55.414 | 157 | 60 | 2 | 12 | 168 | 5 | 151 | 1.69e-49 | 160 |
| Msa0027870 | MtrunA17_Chr8g0351721 | 64.103 | 117 | 42 | 0 | 6 | 122 | 9 | 125 | 2.48e-48 | 157 |
| Msa0027870 | MtrunA17_Chr1g0184271 | 70.297 | 101 | 30 | 0 | 15 | 115 | 12 | 112 | 7.98e-48 | 156 |
| Msa0027870 | MtrunA17_Chr6g0460951 | 68.317 | 101 | 32 | 0 | 15 | 115 | 40 | 140 | 3.09e-46 | 152 |
| Msa0027870 | MtrunA17_Chr8g0351701 | 68.317 | 101 | 32 | 0 | 15 | 115 | 23 | 123 | 6.31e-46 | 151 |
| Msa0027870 | MtrunA17_Chr7g0245871 | 67.368 | 95 | 31 | 0 | 15 | 109 | 27 | 121 | 1.26e-42 | 143 |
| Msa0027870 | MtrunA17_Chr5g0435641 | 62.887 | 97 | 36 | 0 | 13 | 109 | 5 | 101 | 3.12e-42 | 140 |
| Msa0027870 | MtrunA17_Chr2g0311601 | 54.867 | 113 | 50 | 1 | 5 | 117 | 3 | 114 | 1.35e-40 | 135 |
| Msa0027870 | MtrunA17_Chr4g0043421 | 52.991 | 117 | 54 | 1 | 1 | 117 | 1 | 116 | 2.35e-40 | 135 |
| Msa0027870 | MtrunA17_Chr5g0437571 | 59.406 | 101 | 40 | 1 | 15 | 115 | 6 | 105 | 8.79e-38 | 128 |
| Msa0027870 | MtrunA17_Chr3g0106101 | 48.837 | 129 | 65 | 1 | 11 | 139 | 3 | 130 | 1.15e-37 | 129 |
| Msa0027870 | MtrunA17_Chr7g0227511 | 53.659 | 123 | 56 | 1 | 7 | 129 | 3 | 124 | 1.18e-37 | 128 |
| Msa0027870 | MtrunA17_Chr7g0245861 | 66.667 | 93 | 29 | 2 | 12 | 102 | 9 | 101 | 5.09e-37 | 125 |
| Msa0027870 | MtrunA17_Chr6g0449641 | 47.917 | 144 | 58 | 4 | 12 | 150 | 6 | 137 | 1.80e-36 | 124 |
| Msa0027870 | MtrunA17_Chr3g0097221 | 59.048 | 105 | 42 | 1 | 11 | 115 | 3 | 106 | 3.42e-36 | 128 |
| Msa0027870 | MtrunA17_Chr3g0114061 | 58.416 | 101 | 41 | 1 | 15 | 115 | 8 | 107 | 7.25e-36 | 123 |
| Msa0027870 | MtrunA17_Chr4g0058651 | 62.105 | 95 | 35 | 1 | 15 | 109 | 11 | 104 | 1.59e-35 | 123 |
| Msa0027870 | MtrunA17_Chr5g0402611 | 58.095 | 105 | 43 | 1 | 11 | 115 | 4 | 107 | 1.86e-35 | 127 |
| Msa0027870 | MtrunA17_Chr3g0117121 | 57.407 | 108 | 45 | 1 | 7 | 114 | 2 | 108 | 1.93e-35 | 123 |
| Msa0027870 | MtrunA17_Chr5g0438091 | 53.465 | 101 | 46 | 1 | 15 | 115 | 39 | 138 | 3.40e-34 | 120 |
| Msa0027870 | MtrunA17_Chr6g0449651 | 54.717 | 106 | 47 | 1 | 12 | 117 | 64 | 168 | 3.97e-34 | 120 |
| Msa0027870 | MtrunA17_Chr6g0460941 | 62.500 | 88 | 33 | 0 | 15 | 102 | 7 | 94 | 9.81e-34 | 115 |
| Msa0027870 | MtrunA17_Chr3g0129071 | 52.727 | 110 | 50 | 2 | 15 | 124 | 47 | 154 | 1.61e-33 | 119 |
| Msa0027870 | MtrunA17_Chr3g0113891 | 50.442 | 113 | 54 | 2 | 1 | 113 | 1 | 111 | 3.73e-33 | 117 |
| Msa0027870 | MtrunA17_Chr3g0115431 | 56.436 | 101 | 43 | 1 | 15 | 115 | 9 | 108 | 1.81e-32 | 116 |
| Msa0027870 | MtrunA17_Chr5g0437401 | 51.852 | 108 | 50 | 2 | 6 | 113 | 3 | 108 | 5.61e-32 | 114 |
| Msa0027870 | MtrunA17_Chr4g0030001 | 48.000 | 125 | 62 | 3 | 2 | 125 | 11 | 133 | 1.60e-31 | 113 |
| Msa0027870 | MtrunA17_Chr8g0353981 | 61.446 | 83 | 31 | 1 | 11 | 93 | 3 | 84 | 5.80e-31 | 113 |
| Msa0027870 | MtrunA17_Chr5g0432451 | 51.261 | 119 | 57 | 1 | 15 | 133 | 43 | 160 | 1.21e-29 | 109 |
| Msa0027870 | MtrunA17_Chr1g0200201 | 51.961 | 102 | 48 | 1 | 16 | 117 | 73 | 173 | 1.24e-29 | 109 |
| Msa0027870 | MtrunA17_Chr5g0444351 | 48.000 | 100 | 51 | 1 | 16 | 115 | 6 | 104 | 4.14e-27 | 100 |
| Msa0027870 | MtrunA17_Chr7g0225111 | 46.000 | 100 | 53 | 1 | 16 | 115 | 6 | 104 | 1.75e-26 | 98.2 |
| Msa0027870 | MtrunA17_Chr8g0374601 | 45.455 | 99 | 53 | 1 | 15 | 113 | 26 | 123 | 1.05e-22 | 92.4 |
| Msa0027870 | MtrunA17_Chr8g0374591 | 40.594 | 101 | 59 | 1 | 15 | 115 | 8 | 107 | 8.31e-21 | 84.0 |
| Msa0027870 | MtrunA17_Chr4g0059901 | 42.718 | 103 | 58 | 1 | 16 | 118 | 11 | 112 | 5.88e-20 | 85.1 |
| Msa0027870 | MtrunA17_Chr2g0330201 | 39.000 | 100 | 60 | 1 | 16 | 115 | 20 | 118 | 3.18e-19 | 83.6 |
| Msa0027870 | MtrunA17_Chr6g0452691 | 45.679 | 81 | 42 | 2 | 16 | 95 | 10 | 89 | 2.51e-18 | 79.0 |
| Msa0027870 | MtrunA17_Chr6g0452671 | 37.755 | 98 | 60 | 1 | 16 | 113 | 12 | 108 | 4.13e-17 | 76.3 |
| Msa0027870 | MtrunA17_Chr6g0452661 | 36.364 | 99 | 61 | 2 | 16 | 113 | 10 | 107 | 1.25e-16 | 75.9 |
| Msa0027870 | MtrunA17_Chr4g0040831 | 37.273 | 110 | 58 | 2 | 16 | 115 | 16 | 124 | 2.19e-16 | 74.3 |
| Msa0027870 | MtrunA17_Chr8g0374581 | 33.333 | 144 | 77 | 5 | 15 | 152 | 8 | 138 | 2.48e-16 | 74.3 |
| Msa0027870 | MtrunA17_Chr8g0342351 | 37.864 | 103 | 63 | 1 | 16 | 118 | 13 | 114 | 3.94e-16 | 74.7 |
| Msa0027870 | MtrunA17_Chr4g0055441 | 38.542 | 96 | 53 | 4 | 16 | 106 | 3 | 97 | 6.90e-14 | 66.6 |
| Msa0027870 | MtrunA17_Chr5g0439111 | 33.043 | 115 | 75 | 2 | 16 | 129 | 10 | 123 | 3.61e-13 | 65.9 |
| Msa0027870 | MtrunA17_Chr2g0326041 | 48.148 | 54 | 27 | 1 | 8 | 61 | 26 | 78 | 1.51e-12 | 61.2 |
| Msa0027870 | MtrunA17_Chr2g0326051 | 51.852 | 54 | 26 | 0 | 64 | 117 | 8 | 61 | 4.81e-11 | 58.2 |
| Msa0027870 | MtrunA17_Chr4g0046201 | 30.682 | 88 | 60 | 1 | 16 | 103 | 7 | 93 | 4.90e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027870 | AT2G42430.1 | 47.368 | 247 | 83 | 7 | 1 | 202 | 1 | 245 | 2.80e-63 | 196 |
| Msa0027870 | AT3G58190.1 | 60.317 | 126 | 48 | 1 | 15 | 138 | 11 | 136 | 1.14e-48 | 158 |
| Msa0027870 | AT3G03760.1 | 69.811 | 106 | 32 | 0 | 15 | 120 | 51 | 156 | 4.99e-48 | 158 |
| Msa0027870 | AT2G42440.1 | 61.345 | 119 | 46 | 0 | 12 | 130 | 4 | 122 | 9.07e-48 | 157 |
| Msa0027870 | AT2G31310.1 | 65.049 | 103 | 36 | 0 | 13 | 115 | 5 | 107 | 1.38e-46 | 152 |
| Msa0027870 | AT2G45420.1 | 70.408 | 98 | 29 | 0 | 18 | 115 | 40 | 137 | 1.37e-44 | 149 |
| Msa0027870 | AT4G00220.1 | 68.367 | 98 | 31 | 0 | 18 | 115 | 20 | 117 | 2.67e-44 | 147 |
| Msa0027870 | AT4G00210.1 | 60.909 | 110 | 43 | 0 | 13 | 122 | 9 | 118 | 2.96e-44 | 147 |
| Msa0027870 | AT2G45410.1 | 68.367 | 98 | 31 | 0 | 18 | 115 | 19 | 116 | 3.46e-43 | 143 |
| Msa0027870 | AT5G06080.1 | 60.952 | 105 | 41 | 0 | 11 | 115 | 3 | 107 | 4.26e-43 | 143 |
| Msa0027870 | AT3G27650.1 | 60.000 | 100 | 39 | 1 | 15 | 114 | 39 | 137 | 4.81e-38 | 129 |
| Msa0027870 | AT5G63090.4 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 6.54e-36 | 124 |
| Msa0027870 | AT5G63090.3 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 6.54e-36 | 124 |
| Msa0027870 | AT5G63090.2 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 6.54e-36 | 124 |
| Msa0027870 | AT5G63090.1 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 6.54e-36 | 124 |
| Msa0027870 | AT2G30130.1 | 58.416 | 101 | 41 | 1 | 15 | 115 | 8 | 107 | 1.82e-35 | 124 |
| Msa0027870 | AT1G31320.1 | 55.208 | 96 | 42 | 1 | 7 | 102 | 5 | 99 | 6.34e-34 | 119 |
| Msa0027870 | AT1G07900.1 | 53.398 | 103 | 47 | 1 | 15 | 117 | 33 | 134 | 1.24e-33 | 119 |
| Msa0027870 | AT5G66870.1 | 55.238 | 105 | 46 | 1 | 11 | 115 | 3 | 106 | 3.73e-33 | 121 |
| Msa0027870 | AT2G30340.2 | 47.934 | 121 | 60 | 2 | 15 | 133 | 53 | 172 | 3.93e-33 | 120 |
| Msa0027870 | AT2G30340.1 | 47.934 | 121 | 60 | 2 | 15 | 133 | 52 | 171 | 4.42e-33 | 120 |
| Msa0027870 | AT1G16530.1 | 45.968 | 124 | 65 | 2 | 15 | 137 | 14 | 136 | 9.01e-33 | 116 |
| Msa0027870 | AT2G28500.1 | 48.696 | 115 | 57 | 2 | 15 | 129 | 55 | 167 | 2.07e-32 | 117 |
| Msa0027870 | AT2G23660.2 | 52.885 | 104 | 48 | 1 | 14 | 117 | 4 | 106 | 4.25e-32 | 118 |
| Msa0027870 | AT2G23660.3 | 52.885 | 104 | 48 | 1 | 14 | 117 | 4 | 106 | 4.25e-32 | 118 |
| Msa0027870 | AT2G23660.1 | 52.885 | 104 | 48 | 1 | 14 | 117 | 4 | 106 | 4.25e-32 | 118 |
| Msa0027870 | AT3G26660.1 | 44.248 | 113 | 61 | 2 | 16 | 127 | 6 | 117 | 7.79e-31 | 109 |
| Msa0027870 | AT3G11090.1 | 51.429 | 105 | 49 | 2 | 5 | 109 | 2 | 104 | 4.05e-30 | 109 |
| Msa0027870 | AT3G26620.1 | 44.340 | 106 | 58 | 1 | 16 | 121 | 6 | 110 | 7.38e-30 | 107 |
| Msa0027870 | AT1G65620.1 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.99e-29 | 108 |
| Msa0027870 | AT1G65620.4 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.99e-29 | 108 |
| Msa0027870 | AT1G65620.3 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.99e-29 | 108 |
| Msa0027870 | AT1G65620.5 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.99e-29 | 108 |
| Msa0027870 | AT1G65620.2 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.99e-29 | 108 |
| Msa0027870 | AT2G40470.2 | 51.754 | 114 | 54 | 1 | 15 | 128 | 20 | 132 | 1.16e-28 | 106 |
| Msa0027870 | AT2G40470.1 | 51.754 | 114 | 54 | 1 | 15 | 128 | 45 | 157 | 1.89e-28 | 106 |
| Msa0027870 | AT3G50510.1 | 46.465 | 99 | 52 | 1 | 15 | 113 | 12 | 109 | 8.51e-23 | 91.3 |
| Msa0027870 | AT3G50510.2 | 46.465 | 99 | 52 | 1 | 15 | 113 | 12 | 109 | 8.51e-23 | 91.3 |
| Msa0027870 | AT1G72980.1 | 35.000 | 120 | 77 | 1 | 12 | 131 | 10 | 128 | 3.58e-17 | 77.0 |
| Msa0027870 | AT3G47870.1 | 35.000 | 100 | 64 | 1 | 16 | 115 | 37 | 135 | 1.63e-16 | 76.6 |
| Msa0027870 | AT5G35900.1 | 39.000 | 100 | 60 | 1 | 16 | 115 | 6 | 104 | 2.73e-16 | 74.3 |
| Msa0027870 | AT3G13850.1 | 38.000 | 100 | 61 | 1 | 16 | 115 | 37 | 135 | 2.94e-16 | 75.5 |
| Msa0027870 | AT1G06280.1 | 45.570 | 79 | 34 | 2 | 16 | 90 | 25 | 98 | 7.15e-16 | 73.2 |
Find 43 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTATTATAGATCCTGTTTA+TGG | 0.144291 | 1_1:-52502821 | Msa0027870:CDS |
| TTCATATTTGTGGGACAAAA+TGG | 0.226031 | 1_1:+52501128 | None:intergenic |
| TAAAAGAATGTCATATGATT+TGG | 0.238586 | 1_1:-52501012 | Msa0027870:CDS |
| AATGATGGGAAACTATAATT+AGG | 0.332280 | 1_1:-52500964 | None:intergenic |
| AGGGAGCTCTTAGGAGATAT+AGG | 0.344167 | 1_1:+52501104 | None:intergenic |
| TGAATAGCTGCAAATCTTGC+AGG | 0.346463 | 1_1:+52502944 | None:intergenic |
| CATGGACATCCTGAGGATCT+AGG | 0.355593 | 1_1:+52503043 | None:intergenic |
| AAAAGAATGTCATATGATTT+GGG | 0.357241 | 1_1:-52501011 | Msa0027870:CDS |
| GCAGCTATTCATAAAGTGTT+TGG | 0.364830 | 1_1:-52502932 | Msa0027870:CDS |
| TGATTTATGGCTTCTACAAA+TGG | 0.394946 | 1_1:-52503073 | None:intergenic |
| GATATAGGGTTCATATTTGT+GGG | 0.408424 | 1_1:+52501119 | None:intergenic |
| ATTGAATCAAGGGAGCTCTT+AGG | 0.410397 | 1_1:+52501095 | None:intergenic |
| CCTAGAGGAGACAGAGAACT+TGG | 0.411652 | 1_1:-52501195 | Msa0027870:CDS |
| CCAAGTTCTCTGTCTCCTCT+AGG | 0.426551 | 1_1:+52501195 | None:intergenic |
| AACTTGGAGAATCAATGGTC+AGG | 0.427708 | 1_1:-52501179 | Msa0027870:CDS |
| AGAAACATCTCTCGGAATGA+TGG | 0.438279 | 1_1:-52500979 | Msa0027870:CDS |
| GGCTCTAGCCCTAGATCCTC+AGG | 0.441315 | 1_1:-52503052 | Msa0027870:CDS |
| GCAATTGCGGCAACAGCATC+GGG | 0.447204 | 1_1:+52502860 | None:intergenic |
| AGATATAGGGTTCATATTTG+TGG | 0.449622 | 1_1:+52501118 | None:intergenic |
| GGGAGCTCTTAGGAGATATA+GGG | 0.451691 | 1_1:+52501105 | None:intergenic |
| TGTGATACACAACCATAAAC+AGG | 0.455984 | 1_1:+52502809 | None:intergenic |
| TGCTAAAATCAATTGAATCA+AGG | 0.464352 | 1_1:+52501084 | None:intergenic |
| CAGAGAACTTGGAGAATCAA+TGG | 0.493895 | 1_1:-52501184 | Msa0027870:CDS |
| GCTAAAATCAATTGAATCAA+GGG | 0.496109 | 1_1:+52501085 | None:intergenic |
| AGCAATTGCGGCAACAGCAT+CGG | 0.501002 | 1_1:+52502859 | None:intergenic |
| GAAACATCTCTCGGAATGAT+GGG | 0.517494 | 1_1:-52500978 | Msa0027870:CDS |
| ATGGACATCCTGAGGATCTA+GGG | 0.518326 | 1_1:+52503044 | None:intergenic |
| AGGAATTTGCATGCCCCACA+TGG | 0.523694 | 1_1:+52503025 | None:intergenic |
| TGGTAAATTCAGTAGCATCT+TGG | 0.557512 | 1_1:+52502895 | None:intergenic |
| ACTTGGAGAATCAATGGTCA+GGG | 0.558166 | 1_1:-52501178 | Msa0027870:CDS |
| GCATCGGGACGATCATGAGC+TGG | 0.597406 | 1_1:+52502875 | None:intergenic |
| GGGCATGCAAATTCCTCCGT+AGG | 0.600566 | 1_1:-52503018 | Msa0027870:CDS |
| TTGAGCTTCATAAGCAATTG+CGG | 0.600657 | 1_1:+52502847 | None:intergenic |
| GATCCTCAGGATGTCCATGT+GGG | 0.601232 | 1_1:-52503039 | Msa0027870:CDS |
| AGATCCTCAGGATGTCCATG+TGG | 0.614428 | 1_1:-52503040 | Msa0027870:CDS |
| AGCACAACTAATGCAAGTGA+AGG | 0.620211 | 1_1:-52501240 | Msa0027870:CDS |
| GAGCGGCAAGAAACATCTCT+CGG | 0.627630 | 1_1:-52500987 | Msa0027870:CDS |
| ATTCAGAAGTACACTTCCTA+CGG | 0.633068 | 1_1:+52503002 | None:intergenic |
| AGTAATTAGTCAAAGCCTAG+AGG | 0.635942 | 1_1:-52501210 | Msa0027870:CDS |
| TGCCCCACATGGACATCCTG+AGG | 0.640571 | 1_1:+52503036 | None:intergenic |
| TGTCATATGATTTGGGTGAG+CGG | 0.650337 | 1_1:-52501004 | Msa0027870:CDS |
| CAGAAGTACACTTCCTACGG+AGG | 0.660431 | 1_1:+52503005 | None:intergenic |
| ATCCTCAGGATGTCCATGTG+GGG | 0.681917 | 1_1:-52503038 | Msa0027870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATATAACTTCTTTTTA+AGG | - | chr1_1:52501605-52501624 | Msa0027870:intron | 10.0% |
| !!! | AATCAATTAAAATTTGTTAA+TGG | + | chr1_1:52501797-52501816 | None:intergenic | 10.0% |
| !!! | AAATATATCATTTTAATTTG+CGG | + | chr1_1:52501929-52501948 | None:intergenic | 10.0% |
| !! | TCTATATATAAGAAAAATTT+GGG | + | chr1_1:52502542-52502561 | None:intergenic | 10.0% |
| !! | TTCTATATATAAGAAAAATT+TGG | + | chr1_1:52502543-52502562 | None:intergenic | 10.0% |
| !!! | TAATATATAACTTCTTTTTA+AGG | - | chr1_1:52501605-52501624 | Msa0027870:intron | 10.0% |
| !!! | AATCAATTAAAATTTGTTAA+TGG | + | chr1_1:52501797-52501816 | None:intergenic | 10.0% |
| !!! | AAATATATCATTTTAATTTG+CGG | + | chr1_1:52501929-52501948 | None:intergenic | 10.0% |
| !! | TCTATATATAAGAAAAATTT+GGG | + | chr1_1:52502542-52502561 | None:intergenic | 10.0% |
| !! | TTCTATATATAAGAAAAATT+TGG | + | chr1_1:52502543-52502562 | None:intergenic | 10.0% |
| !! | TGTGTTAAAATGTTAATTAT+AGG | + | chr1_1:52501284-52501303 | None:intergenic | 15.0% |
| !! | AAAATTGTGGAAAAAATTTA+TGG | + | chr1_1:52501540-52501559 | None:intergenic | 15.0% |
| !!! | ATTTTGAGAAAAAGAAAAAT+GGG | + | chr1_1:52502227-52502246 | None:intergenic | 15.0% |
| !!! | TATTTTGAGAAAAAGAAAAA+TGG | + | chr1_1:52502228-52502247 | None:intergenic | 15.0% |
| !!! | ATTAATTATGTTGATTTTGA+TGG | + | chr1_1:52502388-52502407 | None:intergenic | 15.0% |
| !! | TGTGTTAAAATGTTAATTAT+AGG | + | chr1_1:52501284-52501303 | None:intergenic | 15.0% |
| !! | AAAATTGTGGAAAAAATTTA+TGG | + | chr1_1:52501540-52501559 | None:intergenic | 15.0% |
| !!! | ATTTTGAGAAAAAGAAAAAT+GGG | + | chr1_1:52502227-52502246 | None:intergenic | 15.0% |
| !!! | TATTTTGAGAAAAAGAAAAA+TGG | + | chr1_1:52502228-52502247 | None:intergenic | 15.0% |
| !!! | ATTAATTATGTTGATTTTGA+TGG | + | chr1_1:52502388-52502407 | None:intergenic | 15.0% |
| !!! | CTGCAACTTTATTTTTATAT+AGG | + | chr1_1:52501478-52501497 | None:intergenic | 20.0% |
| !! | AAAAAAGCAAAACAAAATTG+TGG | + | chr1_1:52501553-52501572 | None:intergenic | 20.0% |
| !!! | ACATATATGTGTTCAAATTT+TGG | - | chr1_1:52501651-52501670 | Msa0027870:intron | 20.0% |
| !!! | ACAATTTTCTTCATACAAAA+AGG | - | chr1_1:52502001-52502020 | Msa0027870:intron | 20.0% |
| !!! | CAAGAATTACTTAGAATTTT+AGG | + | chr1_1:52502154-52502173 | None:intergenic | 20.0% |
| !!! | AATAAAGAAGGGTATAATAA+TGG | + | chr1_1:52502293-52502312 | None:intergenic | 20.0% |
| !! | GGATGAAATTTAATAAAGAA+GGG | + | chr1_1:52502304-52502323 | None:intergenic | 20.0% |
| !! | TGGATGAAATTTAATAAAGA+AGG | + | chr1_1:52502305-52502324 | None:intergenic | 20.0% |
| !! | GTACTCCTTTAAATAAATAA+CGG | - | chr1_1:52502594-52502613 | Msa0027870:intron | 20.0% |
| !! | ATGTACCGTTATTTATTTAA+AGG | + | chr1_1:52502602-52502621 | None:intergenic | 20.0% |
| !! | TGTCATATTAATTGTTCATA+TGG | - | chr1_1:52502697-52502716 | Msa0027870:intron | 20.0% |
| !! | GTCATATTAATTGTTCATAT+GGG | - | chr1_1:52502698-52502717 | Msa0027870:intron | 20.0% |
| !! | ACCTAATCAAAATACAAAAA+CGG | + | chr1_1:52502760-52502779 | None:intergenic | 20.0% |
| !! | TAAAAGAATGTCATATGATT+TGG | - | chr1_1:52503020-52503039 | Msa0027870:CDS | 20.0% |
| !! | AAAAGAATGTCATATGATTT+GGG | - | chr1_1:52503021-52503040 | Msa0027870:CDS | 20.0% |
| !!! | CTGCAACTTTATTTTTATAT+AGG | + | chr1_1:52501478-52501497 | None:intergenic | 20.0% |
| !! | AAAAAAGCAAAACAAAATTG+TGG | + | chr1_1:52501553-52501572 | None:intergenic | 20.0% |
| !!! | ACATATATGTGTTCAAATTT+TGG | - | chr1_1:52501651-52501670 | Msa0027870:intron | 20.0% |
| !!! | ACAATTTTCTTCATACAAAA+AGG | - | chr1_1:52502001-52502020 | Msa0027870:intron | 20.0% |
| !!! | CAAGAATTACTTAGAATTTT+AGG | + | chr1_1:52502154-52502173 | None:intergenic | 20.0% |
| !!! | AATAAAGAAGGGTATAATAA+TGG | + | chr1_1:52502293-52502312 | None:intergenic | 20.0% |
| !! | GGATGAAATTTAATAAAGAA+GGG | + | chr1_1:52502304-52502323 | None:intergenic | 20.0% |
| !! | TGGATGAAATTTAATAAAGA+AGG | + | chr1_1:52502305-52502324 | None:intergenic | 20.0% |
| !! | GTACTCCTTTAAATAAATAA+CGG | - | chr1_1:52502594-52502613 | Msa0027870:intron | 20.0% |
| !! | ATGTACCGTTATTTATTTAA+AGG | + | chr1_1:52502602-52502621 | None:intergenic | 20.0% |
| !! | TGTCATATTAATTGTTCATA+TGG | - | chr1_1:52502697-52502716 | Msa0027870:intron | 20.0% |
| !! | GTCATATTAATTGTTCATAT+GGG | - | chr1_1:52502698-52502717 | Msa0027870:intron | 20.0% |
| !! | ACCTAATCAAAATACAAAAA+CGG | + | chr1_1:52502760-52502779 | None:intergenic | 20.0% |
| !! | TAAAAGAATGTCATATGATT+TGG | - | chr1_1:52503020-52503039 | Msa0027870:CDS | 20.0% |
| !! | AAAAGAATGTCATATGATTT+GGG | - | chr1_1:52503021-52503040 | Msa0027870:CDS | 20.0% |
| !!! | TATTTTTGCTTTACAACAAC+AGG | - | chr1_1:52501246-52501265 | Msa0027870:CDS | 25.0% |
| !!! | TTTCATTCAGTTGTTTTCAA+GGG | - | chr1_1:52501514-52501533 | Msa0027870:intron | 25.0% |
| ! | AAAAACAATAAATGCTGCAT+TGG | + | chr1_1:52502268-52502287 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr1_1:52502335-52502354 | Msa0027870:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | - | chr1_1:52502336-52502355 | Msa0027870:intron | 25.0% |
| ! | TCAACAAAAGTTAATGTATC+TGG | - | chr1_1:52502480-52502499 | Msa0027870:intron | 25.0% |
| ! | TTCTTATATATAGAACCAGA+AGG | - | chr1_1:52502548-52502567 | Msa0027870:intron | 25.0% |
| ! | ATAAATAACGGTACATTGAT+TGG | - | chr1_1:52502606-52502625 | Msa0027870:intron | 25.0% |
| ! | CTAATCAAAATACAAAAACG+GGG | + | chr1_1:52502758-52502777 | None:intergenic | 25.0% |
| ! | CCTAATCAAAATACAAAAAC+GGG | + | chr1_1:52502759-52502778 | None:intergenic | 25.0% |
| ! | GCTAAAATCAATTGAATCAA+GGG | + | chr1_1:52502950-52502969 | None:intergenic | 25.0% |
| ! | TGCTAAAATCAATTGAATCA+AGG | + | chr1_1:52502951-52502970 | None:intergenic | 25.0% |
| !! | TTCTTTTATTAGAGTAAGCT+TGG | + | chr1_1:52503008-52503027 | None:intergenic | 25.0% |
| !!! | TATTTTTGCTTTACAACAAC+AGG | - | chr1_1:52501246-52501265 | Msa0027870:CDS | 25.0% |
| !!! | TTTCATTCAGTTGTTTTCAA+GGG | - | chr1_1:52501514-52501533 | Msa0027870:intron | 25.0% |
| ! | AAAAACAATAAATGCTGCAT+TGG | + | chr1_1:52502268-52502287 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr1_1:52502335-52502354 | Msa0027870:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | - | chr1_1:52502336-52502355 | Msa0027870:intron | 25.0% |
| ! | TCAACAAAAGTTAATGTATC+TGG | - | chr1_1:52502480-52502499 | Msa0027870:intron | 25.0% |
| ! | TTCTTATATATAGAACCAGA+AGG | - | chr1_1:52502548-52502567 | Msa0027870:intron | 25.0% |
| ! | ATAAATAACGGTACATTGAT+TGG | - | chr1_1:52502606-52502625 | Msa0027870:intron | 25.0% |
| ! | CTAATCAAAATACAAAAACG+GGG | + | chr1_1:52502758-52502777 | None:intergenic | 25.0% |
| ! | CCTAATCAAAATACAAAAAC+GGG | + | chr1_1:52502759-52502778 | None:intergenic | 25.0% |
| ! | GCTAAAATCAATTGAATCAA+GGG | + | chr1_1:52502950-52502969 | None:intergenic | 25.0% |
| ! | TGCTAAAATCAATTGAATCA+AGG | + | chr1_1:52502951-52502970 | None:intergenic | 25.0% |
| !! | TTCTTTTATTAGAGTAAGCT+TGG | + | chr1_1:52503008-52503027 | None:intergenic | 25.0% |
| CCTTGTTCACAACAAAAATA+AGG | + | chr1_1:52501067-52501086 | None:intergenic | 30.0% | |
| !!! | CCTTATTTTTGTTGTGAACA+AGG | - | chr1_1:52501064-52501083 | Msa0027870:CDS | 30.0% |
| CGTATTATAGATCCTGTTTA+TGG | - | chr1_1:52501211-52501230 | Msa0027870:CDS | 30.0% | |
| !! | CTTTCATTCAGTTGTTTTCA+AGG | - | chr1_1:52501513-52501532 | Msa0027870:intron | 30.0% |
| TACCTATGTATACAACAACA+GGG | + | chr1_1:52501729-52501748 | None:intergenic | 30.0% | |
| TTGTTGTATACATAGGTAGT+AGG | - | chr1_1:52501731-52501750 | Msa0027870:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+CGG | + | chr1_1:52502202-52502221 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | + | chr1_1:52502339-52502358 | None:intergenic | 30.0% | |
| AGGTTTATGCACGATTATTA+AGG | + | chr1_1:52502416-52502435 | None:intergenic | 30.0% | |
| CTGAAATGTCTCTTGTAAAT+AGG | + | chr1_1:52502460-52502479 | None:intergenic | 30.0% | |
| !! | TCAACAAAAGTTGATGTATC+TGG | + | chr1_1:52502519-52502538 | None:intergenic | 30.0% |
| TCTCTAAATAATACTCCTTC+TGG | + | chr1_1:52502566-52502585 | None:intergenic | 30.0% | |
| !! | GAAGGAGTATTATTTAGAGA+CGG | - | chr1_1:52502566-52502585 | Msa0027870:intron | 30.0% |
| !! | TGATTGGTGGATTTAAATTG+CGG | - | chr1_1:52502622-52502641 | Msa0027870:intron | 30.0% |
| !! | TGGGTTTTATGTTTGACTTA+TGG | - | chr1_1:52502717-52502736 | Msa0027870:intron | 30.0% |
| !!! | CCCGTTTTTGTATTTTGATT+AGG | - | chr1_1:52502756-52502775 | Msa0027870:intron | 30.0% |
| TTCATATTTGTGGGACAAAA+TGG | + | chr1_1:52502907-52502926 | None:intergenic | 30.0% | |
| GATATAGGGTTCATATTTGT+GGG | + | chr1_1:52502916-52502935 | None:intergenic | 30.0% | |
| AGATATAGGGTTCATATTTG+TGG | + | chr1_1:52502917-52502936 | None:intergenic | 30.0% | |
| CCTTGTTCACAACAAAAATA+AGG | + | chr1_1:52501067-52501086 | None:intergenic | 30.0% | |
| !!! | CCTTATTTTTGTTGTGAACA+AGG | - | chr1_1:52501064-52501083 | Msa0027870:CDS | 30.0% |
| CGTATTATAGATCCTGTTTA+TGG | - | chr1_1:52501211-52501230 | Msa0027870:CDS | 30.0% | |
| !! | CTTTCATTCAGTTGTTTTCA+AGG | - | chr1_1:52501513-52501532 | Msa0027870:intron | 30.0% |
| TACCTATGTATACAACAACA+GGG | + | chr1_1:52501729-52501748 | None:intergenic | 30.0% | |
| TTGTTGTATACATAGGTAGT+AGG | - | chr1_1:52501731-52501750 | Msa0027870:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+CGG | + | chr1_1:52502202-52502221 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | + | chr1_1:52502339-52502358 | None:intergenic | 30.0% | |
| AGGTTTATGCACGATTATTA+AGG | + | chr1_1:52502416-52502435 | None:intergenic | 30.0% | |
| CTGAAATGTCTCTTGTAAAT+AGG | + | chr1_1:52502460-52502479 | None:intergenic | 30.0% | |
| !! | TCAACAAAAGTTGATGTATC+TGG | + | chr1_1:52502519-52502538 | None:intergenic | 30.0% |
| TCTCTAAATAATACTCCTTC+TGG | + | chr1_1:52502566-52502585 | None:intergenic | 30.0% | |
| !! | GAAGGAGTATTATTTAGAGA+CGG | - | chr1_1:52502566-52502585 | Msa0027870:intron | 30.0% |
| !! | TGATTGGTGGATTTAAATTG+CGG | - | chr1_1:52502622-52502641 | Msa0027870:intron | 30.0% |
| !! | TGGGTTTTATGTTTGACTTA+TGG | - | chr1_1:52502717-52502736 | Msa0027870:intron | 30.0% |
| !!! | CCCGTTTTTGTATTTTGATT+AGG | - | chr1_1:52502756-52502775 | Msa0027870:intron | 30.0% |
| TTCATATTTGTGGGACAAAA+TGG | + | chr1_1:52502907-52502926 | None:intergenic | 30.0% | |
| GATATAGGGTTCATATTTGT+GGG | + | chr1_1:52502916-52502935 | None:intergenic | 30.0% | |
| AGATATAGGGTTCATATTTG+TGG | + | chr1_1:52502917-52502936 | None:intergenic | 30.0% | |
| ! | ATTCAGAAGTACACTTCCTA+CGG | + | chr1_1:52501033-52501052 | None:intergenic | 35.0% |
| ! | GCAGCTATTCATAAAGTGTT+TGG | - | chr1_1:52501100-52501119 | Msa0027870:CDS | 35.0% |
| TGGTAAATTCAGTAGCATCT+TGG | + | chr1_1:52501140-52501159 | None:intergenic | 35.0% | |
| TTGAGCTTCATAAGCAATTG+CGG | + | chr1_1:52501188-52501207 | None:intergenic | 35.0% | |
| TGTGATACACAACCATAAAC+AGG | + | chr1_1:52501226-52501245 | None:intergenic | 35.0% | |
| CTACCTATGTATACAACAAC+AGG | + | chr1_1:52501730-52501749 | None:intergenic | 35.0% | |
| GTATACATAGGTAGTAGGTT+TGG | - | chr1_1:52501736-52501755 | Msa0027870:intron | 35.0% | |
| ATCGATCAGTAAGAGTTGTT+TGG | - | chr1_1:52501897-52501916 | Msa0027870:intron | 35.0% | |
| AGTTAGTGGAGTAGTAAAGT+TGG | + | chr1_1:52502325-52502344 | None:intergenic | 35.0% | |
| ATGTCTCTTGTAAATAGGAC+CGG | + | chr1_1:52502455-52502474 | None:intergenic | 35.0% | |
| GAGTATTATTTAGAGACGGA+GGG | - | chr1_1:52502570-52502589 | Msa0027870:intron | 35.0% | |
| ! | AATAACGGTACATTGATTGG+TGG | - | chr1_1:52502609-52502628 | Msa0027870:intron | 35.0% |
| AGTAATTAGTCAAAGCCTAG+AGG | - | chr1_1:52502822-52502841 | Msa0027870:CDS | 35.0% | |
| ! | ATTCAGAAGTACACTTCCTA+CGG | + | chr1_1:52501033-52501052 | None:intergenic | 35.0% |
| ! | GCAGCTATTCATAAAGTGTT+TGG | - | chr1_1:52501100-52501119 | Msa0027870:CDS | 35.0% |
| TGGTAAATTCAGTAGCATCT+TGG | + | chr1_1:52501140-52501159 | None:intergenic | 35.0% | |
| TTGAGCTTCATAAGCAATTG+CGG | + | chr1_1:52501188-52501207 | None:intergenic | 35.0% | |
| TGTGATACACAACCATAAAC+AGG | + | chr1_1:52501226-52501245 | None:intergenic | 35.0% | |
| CTACCTATGTATACAACAAC+AGG | + | chr1_1:52501730-52501749 | None:intergenic | 35.0% | |
| GTATACATAGGTAGTAGGTT+TGG | - | chr1_1:52501736-52501755 | Msa0027870:intron | 35.0% | |
| ATCGATCAGTAAGAGTTGTT+TGG | - | chr1_1:52501897-52501916 | Msa0027870:intron | 35.0% | |
| AGTTAGTGGAGTAGTAAAGT+TGG | + | chr1_1:52502325-52502344 | None:intergenic | 35.0% | |
| ATGTCTCTTGTAAATAGGAC+CGG | + | chr1_1:52502455-52502474 | None:intergenic | 35.0% | |
| GAGTATTATTTAGAGACGGA+GGG | - | chr1_1:52502570-52502589 | Msa0027870:intron | 35.0% | |
| ! | AATAACGGTACATTGATTGG+TGG | - | chr1_1:52502609-52502628 | Msa0027870:intron | 35.0% |
| AGTAATTAGTCAAAGCCTAG+AGG | - | chr1_1:52502822-52502841 | Msa0027870:CDS | 35.0% | |
| TGAATAGCTGCAAATCTTGC+AGG | + | chr1_1:52501091-52501110 | None:intergenic | 40.0% | |
| CTCCCTGTTGTTGTATACAT+AGG | - | chr1_1:52501724-52501743 | Msa0027870:intron | 40.0% | |
| ATCGACGAGTAAGAGTTCTT+TGG | - | chr1_1:52501869-52501888 | Msa0027870:intron | 40.0% | |
| GACAATTATTGTGAGACGGA+TGG | + | chr1_1:52502198-52502217 | None:intergenic | 40.0% | |
| ! | GGAGTATTATTTAGAGACGG+AGG | - | chr1_1:52502569-52502588 | Msa0027870:intron | 40.0% |
| GCAGTGCAAACGTACTATAA+AGG | + | chr1_1:52502656-52502675 | None:intergenic | 40.0% | |
| AGCACAACTAATGCAAGTGA+AGG | - | chr1_1:52502792-52502811 | Msa0027870:CDS | 40.0% | |
| CAGAGAACTTGGAGAATCAA+TGG | - | chr1_1:52502848-52502867 | Msa0027870:CDS | 40.0% | |
| AACTTGGAGAATCAATGGTC+AGG | - | chr1_1:52502853-52502872 | Msa0027870:CDS | 40.0% | |
| ACTTGGAGAATCAATGGTCA+GGG | - | chr1_1:52502854-52502873 | Msa0027870:CDS | 40.0% | |
| ATTGAATCAAGGGAGCTCTT+AGG | + | chr1_1:52502940-52502959 | None:intergenic | 40.0% | |
| ! | TGTCATATGATTTGGGTGAG+CGG | - | chr1_1:52503028-52503047 | Msa0027870:CDS | 40.0% |
| AGAAACATCTCTCGGAATGA+TGG | - | chr1_1:52503053-52503072 | Msa0027870:CDS | 40.0% | |
| GAAACATCTCTCGGAATGAT+GGG | - | chr1_1:52503054-52503073 | Msa0027870:CDS | 40.0% | |
| TGAATAGCTGCAAATCTTGC+AGG | + | chr1_1:52501091-52501110 | None:intergenic | 40.0% | |
| CTCCCTGTTGTTGTATACAT+AGG | - | chr1_1:52501724-52501743 | Msa0027870:intron | 40.0% | |
| ATCGACGAGTAAGAGTTCTT+TGG | - | chr1_1:52501869-52501888 | Msa0027870:intron | 40.0% | |
| GACAATTATTGTGAGACGGA+TGG | + | chr1_1:52502198-52502217 | None:intergenic | 40.0% | |
| ! | GGAGTATTATTTAGAGACGG+AGG | - | chr1_1:52502569-52502588 | Msa0027870:intron | 40.0% |
| GCAGTGCAAACGTACTATAA+AGG | + | chr1_1:52502656-52502675 | None:intergenic | 40.0% | |
| AGCACAACTAATGCAAGTGA+AGG | - | chr1_1:52502792-52502811 | Msa0027870:CDS | 40.0% | |
| CAGAGAACTTGGAGAATCAA+TGG | - | chr1_1:52502848-52502867 | Msa0027870:CDS | 40.0% | |
| AACTTGGAGAATCAATGGTC+AGG | - | chr1_1:52502853-52502872 | Msa0027870:CDS | 40.0% | |
| ACTTGGAGAATCAATGGTCA+GGG | - | chr1_1:52502854-52502873 | Msa0027870:CDS | 40.0% | |
| ATTGAATCAAGGGAGCTCTT+AGG | + | chr1_1:52502940-52502959 | None:intergenic | 40.0% | |
| ! | TGTCATATGATTTGGGTGAG+CGG | - | chr1_1:52503028-52503047 | Msa0027870:CDS | 40.0% |
| AGAAACATCTCTCGGAATGA+TGG | - | chr1_1:52503053-52503072 | Msa0027870:CDS | 40.0% | |
| GAAACATCTCTCGGAATGAT+GGG | - | chr1_1:52503054-52503073 | Msa0027870:CDS | 40.0% | |
| ATGGACATCCTGAGGATCTA+GGG | + | chr1_1:52500991-52501010 | None:intergenic | 45.0% | |
| CCTTAAACGACTACTTCCTC+CGG | - | chr1_1:52502433-52502452 | Msa0027870:intron | 45.0% | |
| TCTCTTGTAAATAGGACCGG+AGG | + | chr1_1:52502452-52502471 | None:intergenic | 45.0% | |
| GGGAGCTCTTAGGAGATATA+GGG | + | chr1_1:52502930-52502949 | None:intergenic | 45.0% | |
| AGGGAGCTCTTAGGAGATAT+AGG | + | chr1_1:52502931-52502950 | None:intergenic | 45.0% | |
| ATGGACATCCTGAGGATCTA+GGG | + | chr1_1:52500991-52501010 | None:intergenic | 45.0% | |
| CCTTAAACGACTACTTCCTC+CGG | - | chr1_1:52502433-52502452 | Msa0027870:intron | 45.0% | |
| TCTCTTGTAAATAGGACCGG+AGG | + | chr1_1:52502452-52502471 | None:intergenic | 45.0% | |
| GGGAGCTCTTAGGAGATATA+GGG | + | chr1_1:52502930-52502949 | None:intergenic | 45.0% | |
| AGGGAGCTCTTAGGAGATAT+AGG | + | chr1_1:52502931-52502950 | None:intergenic | 45.0% | |
| CATGGACATCCTGAGGATCT+AGG | + | chr1_1:52500992-52501011 | None:intergenic | 50.0% | |
| AGATCCTCAGGATGTCCATG+TGG | - | chr1_1:52500992-52501011 | Msa0027870:CDS | 50.0% | |
| GATCCTCAGGATGTCCATGT+GGG | - | chr1_1:52500993-52501012 | Msa0027870:CDS | 50.0% | |
| ATCCTCAGGATGTCCATGTG+GGG | - | chr1_1:52500994-52501013 | Msa0027870:CDS | 50.0% | |
| AGGAATTTGCATGCCCCACA+TGG | + | chr1_1:52501010-52501029 | None:intergenic | 50.0% | |
| ! | CAGAAGTACACTTCCTACGG+AGG | + | chr1_1:52501030-52501049 | None:intergenic | 50.0% |
| AGCAATTGCGGCAACAGCAT+CGG | + | chr1_1:52501176-52501195 | None:intergenic | 50.0% | |
| CCGGAGGAAGTAGTCGTTTA+AGG | + | chr1_1:52502436-52502455 | None:intergenic | 50.0% | |
| CCAAGTTCTCTGTCTCCTCT+AGG | + | chr1_1:52502840-52502859 | None:intergenic | 50.0% | |
| CCTAGAGGAGACAGAGAACT+TGG | - | chr1_1:52502837-52502856 | Msa0027870:CDS | 50.0% | |
| GAGCGGCAAGAAACATCTCT+CGG | - | chr1_1:52503045-52503064 | Msa0027870:CDS | 50.0% | |
| CATGGACATCCTGAGGATCT+AGG | + | chr1_1:52500992-52501011 | None:intergenic | 50.0% | |
| AGATCCTCAGGATGTCCATG+TGG | - | chr1_1:52500992-52501011 | Msa0027870:CDS | 50.0% | |
| GATCCTCAGGATGTCCATGT+GGG | - | chr1_1:52500993-52501012 | Msa0027870:CDS | 50.0% | |
| ATCCTCAGGATGTCCATGTG+GGG | - | chr1_1:52500994-52501013 | Msa0027870:CDS | 50.0% | |
| AGGAATTTGCATGCCCCACA+TGG | + | chr1_1:52501010-52501029 | None:intergenic | 50.0% | |
| ! | CAGAAGTACACTTCCTACGG+AGG | + | chr1_1:52501030-52501049 | None:intergenic | 50.0% |
| AGCAATTGCGGCAACAGCAT+CGG | + | chr1_1:52501176-52501195 | None:intergenic | 50.0% | |
| CCGGAGGAAGTAGTCGTTTA+AGG | + | chr1_1:52502436-52502455 | None:intergenic | 50.0% | |
| CCAAGTTCTCTGTCTCCTCT+AGG | + | chr1_1:52502840-52502859 | None:intergenic | 50.0% | |
| CCTAGAGGAGACAGAGAACT+TGG | - | chr1_1:52502837-52502856 | Msa0027870:CDS | 50.0% | |
| GAGCGGCAAGAAACATCTCT+CGG | - | chr1_1:52503045-52503064 | Msa0027870:CDS | 50.0% | |
| GGGCATGCAAATTCCTCCGT+AGG | - | chr1_1:52501014-52501033 | Msa0027870:CDS | 55.0% | |
| GCAATTGCGGCAACAGCATC+GGG | + | chr1_1:52501175-52501194 | None:intergenic | 55.0% | |
| GGGCATGCAAATTCCTCCGT+AGG | - | chr1_1:52501014-52501033 | Msa0027870:CDS | 55.0% | |
| GCAATTGCGGCAACAGCATC+GGG | + | chr1_1:52501175-52501194 | None:intergenic | 55.0% | |
| ! | GGCTCTAGCCCTAGATCCTC+AGG | - | chr1_1:52500980-52500999 | Msa0027870:CDS | 60.0% |
| TGCCCCACATGGACATCCTG+AGG | + | chr1_1:52500999-52501018 | None:intergenic | 60.0% | |
| GCATCGGGACGATCATGAGC+TGG | + | chr1_1:52501160-52501179 | None:intergenic | 60.0% | |
| ! | GGCTCTAGCCCTAGATCCTC+AGG | - | chr1_1:52500980-52500999 | Msa0027870:CDS | 60.0% |
| TGCCCCACATGGACATCCTG+AGG | + | chr1_1:52500999-52501018 | None:intergenic | 60.0% | |
| GCATCGGGACGATCATGAGC+TGG | + | chr1_1:52501160-52501179 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 52500965 | 52503089 | 52500965 | ID=Msa0027870;Name=Msa0027870 |
| chr1_1 | mRNA | 52500965 | 52503089 | 52500965 | ID=Msa0027870-mRNA-1;Parent=Msa0027870;Name=Msa0027870-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|204 |
| chr1_1 | exon | 52502787 | 52503089 | 52502787 | ID=Msa0027870-mRNA-1:exon:15465;Parent=Msa0027870-mRNA-1 |
| chr1_1 | exon | 52500965 | 52501276 | 52500965 | ID=Msa0027870-mRNA-1:exon:15464;Parent=Msa0027870-mRNA-1 |
| chr1_1 | CDS | 52502787 | 52503089 | 52502787 | ID=Msa0027870-mRNA-1:cds;Parent=Msa0027870-mRNA-1 |
| chr1_1 | CDS | 52500965 | 52501276 | 52500965 | ID=Msa0027870-mRNA-1:cds;Parent=Msa0027870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
