Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0029940 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029940 | MtrunA17_Chr5g0399781 | 52.830 | 53 | 24 | 1 | 4 | 56 | 13 | 64 | 1.77e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTGTGGTTTACATTTCA+AGG | 0.339580 | 1_1:+55741643 | Msa0029940:CDS |
| ATTGGTGTCGGCATCTCTAT+TGG | 0.346524 | 1_1:-55742612 | None:intergenic |
| ATTGGTGTCGGCGTCTCTAT+TGG | 0.349108 | 1_1:-55742630 | None:intergenic |
| CCACAAGCGTTACACAATAT+TGG | 0.380139 | 1_1:-55741629 | None:intergenic |
| TTTCAACAGAAACTCAAGTT+TGG | 0.389578 | 1_1:+55741585 | Msa0029940:CDS |
| AATCTTTCAAACCAAACTTC+AGG | 0.411413 | 1_1:+55741758 | Msa0029940:CDS |
| CCAAGCAATGAGATAGGTCT+TGG | 0.425187 | 1_1:+55742759 | Msa0029940:CDS |
| CACAATATTGGCGTCTCGTA+TGG | 0.440494 | 1_1:-55741617 | None:intergenic |
| TCAAACAACAAAATATCGTC+AGG | 0.502407 | 1_1:-55742717 | None:intergenic |
| TCTTGGATGCATTCGTCTAA+AGG | 0.502885 | 1_1:+55742776 | Msa0029940:CDS |
| TTTATACCAAGCAATGAGAT+AGG | 0.511374 | 1_1:+55742753 | Msa0029940:CDS |
| CCAATATTGTGTAACGCTTG+TGG | 0.532300 | 1_1:+55741629 | Msa0029940:CDS |
| GAAACTCAAGTTTGGCGCAA+AGG | 0.544030 | 1_1:+55741593 | Msa0029940:CDS |
| CCAAGACCTATCTCATTGCT+TGG | 0.545705 | 1_1:-55742759 | None:intergenic |
| GGTTTACATTTCAAGGCGAA+AGG | 0.567422 | 1_1:+55741650 | Msa0029940:CDS |
| AATAGAGACGCCGACACCAA+TGG | 0.575440 | 1_1:+55742632 | Msa0029940:CDS |
| GTCGGCGTCTCTATTGGTGT+CGG | 0.578211 | 1_1:-55742624 | None:intergenic |
| TCTTCGGGAGATAGTTAGCA+AGG | 0.579240 | 1_1:-55741676 | None:intergenic |
| GGAAACTCATCCATTGGTGT+CGG | 0.599667 | 1_1:-55742642 | None:intergenic |
| AGCCCTGCAAAATCAGTCAT+CGG | 0.602139 | 1_1:+55741700 | Msa0029940:CDS |
| GATACTTCTACAGATCAAGA+TGG | 0.615323 | 1_1:+55742804 | Msa0029940:CDS |
| CTTCGGGAGATAGTTAGCAA+GGG | 0.642252 | 1_1:-55741675 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGATGATATAAATTGAA+GGG | - | chr1_1:55741859-55741878 | None:intergenic | 15.0% |
| !! | AAATAGATGATATAAATTGA+AGG | - | chr1_1:55741860-55741879 | None:intergenic | 15.0% |
| !!! | ACATTGTAAGAATATTTTTA+AGG | + | chr1_1:55742044-55742063 | Msa0029940:intron | 15.0% |
| !!! | CATTGTAAGAATATTTTTAA+GGG | + | chr1_1:55742045-55742064 | Msa0029940:intron | 15.0% |
| !!! | ATTGTAAGAATATTTTTAAG+GGG | + | chr1_1:55742046-55742065 | Msa0029940:intron | 15.0% |
| !! | TTAAAATATGAAACTTCATT+TGG | - | chr1_1:55742233-55742252 | None:intergenic | 15.0% |
| !! | AATAGATGATATAAATTGAA+GGG | - | chr1_1:55741859-55741878 | None:intergenic | 15.0% |
| !! | AAATAGATGATATAAATTGA+AGG | - | chr1_1:55741860-55741879 | None:intergenic | 15.0% |
| !!! | ACATTGTAAGAATATTTTTA+AGG | + | chr1_1:55742044-55742063 | Msa0029940:intron | 15.0% |
| !!! | CATTGTAAGAATATTTTTAA+GGG | + | chr1_1:55742045-55742064 | Msa0029940:intron | 15.0% |
| !!! | ATTGTAAGAATATTTTTAAG+GGG | + | chr1_1:55742046-55742065 | Msa0029940:intron | 15.0% |
| !! | TTAAAATATGAAACTTCATT+TGG | - | chr1_1:55742233-55742252 | None:intergenic | 15.0% |
| !!! | AATTTTTATTACCTGAAGTT+TGG | - | chr1_1:55741772-55741791 | None:intergenic | 20.0% |
| !!! | AATTTTTATTACCTGAAGTT+TGG | - | chr1_1:55741772-55741791 | None:intergenic | 20.0% |
| !! | TTTACATTTGGTGAAATATG+GGG | - | chr1_1:55741818-55741837 | None:intergenic | 25.0% |
| !! | CTTTACATTTGGTGAAATAT+GGG | - | chr1_1:55741819-55741838 | None:intergenic | 25.0% |
| !! | AATAACTTGTGCTTTACATT+TGG | - | chr1_1:55741830-55741849 | None:intergenic | 25.0% |
| ! | TCGATTGAAAATGAAAATGT+TGG | + | chr1_1:55741963-55741982 | Msa0029940:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGTT+GGG | + | chr1_1:55741964-55741983 | Msa0029940:intron | 25.0% |
| !! | ATGGGTATTGTTATAATTCA+GGG | + | chr1_1:55742077-55742096 | Msa0029940:intron | 25.0% |
| ! | ACAAATATCTCCATAAATGT+AGG | - | chr1_1:55742327-55742346 | None:intergenic | 25.0% |
| ! | GTGGGAAAAATACAAATTTA+TGG | + | chr1_1:55742523-55742542 | Msa0029940:intron | 25.0% |
| !! | TTTACATTTGGTGAAATATG+GGG | - | chr1_1:55741818-55741837 | None:intergenic | 25.0% |
| !! | CTTTACATTTGGTGAAATAT+GGG | - | chr1_1:55741819-55741838 | None:intergenic | 25.0% |
| !! | AATAACTTGTGCTTTACATT+TGG | - | chr1_1:55741830-55741849 | None:intergenic | 25.0% |
| ! | TCGATTGAAAATGAAAATGT+TGG | + | chr1_1:55741963-55741982 | Msa0029940:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGTT+GGG | + | chr1_1:55741964-55741983 | Msa0029940:intron | 25.0% |
| !! | ATGGGTATTGTTATAATTCA+GGG | + | chr1_1:55742077-55742096 | Msa0029940:intron | 25.0% |
| ! | ACAAATATCTCCATAAATGT+AGG | - | chr1_1:55742327-55742346 | None:intergenic | 25.0% |
| ! | GTGGGAAAAATACAAATTTA+TGG | + | chr1_1:55742523-55742542 | Msa0029940:intron | 25.0% |
| TTTCAACAGAAACTCAAGTT+TGG | + | chr1_1:55741585-55741604 | Msa0029940:CDS | 30.0% | |
| !!! | CAGATGTTTTTTCAATGTCA+AGG | - | chr1_1:55741727-55741746 | None:intergenic | 30.0% |
| AATCTTTCAAACCAAACTTC+AGG | + | chr1_1:55741758-55741777 | Msa0029940:CDS | 30.0% | |
| ! | GCTTTACATTTGGTGAAATA+TGG | - | chr1_1:55741820-55741839 | None:intergenic | 30.0% |
| !! | ATTTTTCCTTTTCTAGTGCA+TGG | + | chr1_1:55741876-55741895 | Msa0029940:intron | 30.0% |
| !! | TTTTTCCTTTTCTAGTGCAT+GGG | + | chr1_1:55741877-55741896 | Msa0029940:intron | 30.0% |
| ACTCATAAGTAGTGTAGAAT+GGG | + | chr1_1:55741991-55742010 | Msa0029940:intron | 30.0% | |
| !! | TTTTTAAGGGGTACAATTCA+TGG | + | chr1_1:55742058-55742077 | Msa0029940:intron | 30.0% |
| !! | TTTTAAGGGGTACAATTCAT+GGG | + | chr1_1:55742059-55742078 | Msa0029940:intron | 30.0% |
| ! | CATGGGTATTGTTATAATTC+AGG | + | chr1_1:55742076-55742095 | Msa0029940:intron | 30.0% |
| ! | TGGGTATTGTTATAATTCAG+GGG | + | chr1_1:55742078-55742097 | Msa0029940:intron | 30.0% |
| !! | ATTTTAAGTAGACACAGCAT+TGG | + | chr1_1:55742246-55742265 | Msa0029940:intron | 30.0% |
| ACTCTATATGCCTACATTTA+TGG | + | chr1_1:55742314-55742333 | Msa0029940:intron | 30.0% | |
| AATGACAACTAAAGAAGAGT+TGG | + | chr1_1:55742355-55742374 | Msa0029940:intron | 30.0% | |
| CTAGCTAATGTGTAACTATA+AGG | - | chr1_1:55742406-55742425 | None:intergenic | 30.0% | |
| CACATTAGCTAGTATTCTTA+TGG | + | chr1_1:55742414-55742433 | Msa0029940:intron | 30.0% | |
| !!! | CATTAGTACCTTATTTTCTC+AGG | + | chr1_1:55742501-55742520 | Msa0029940:intron | 30.0% |
| !!! | ACAAATGAACGCTTTTTTTG+AGG | - | chr1_1:55742561-55742580 | None:intergenic | 30.0% |
| ! | TATAGACTAAGAAGCTTTTG+TGG | - | chr1_1:55742666-55742685 | None:intergenic | 30.0% |
| TCAAACAACAAAATATCGTC+AGG | - | chr1_1:55742720-55742739 | None:intergenic | 30.0% | |
| TTTATACCAAGCAATGAGAT+AGG | + | chr1_1:55742753-55742772 | Msa0029940:CDS | 30.0% | |
| TTTCAACAGAAACTCAAGTT+TGG | + | chr1_1:55741585-55741604 | Msa0029940:CDS | 30.0% | |
| !!! | CAGATGTTTTTTCAATGTCA+AGG | - | chr1_1:55741727-55741746 | None:intergenic | 30.0% |
| AATCTTTCAAACCAAACTTC+AGG | + | chr1_1:55741758-55741777 | Msa0029940:CDS | 30.0% | |
| ! | GCTTTACATTTGGTGAAATA+TGG | - | chr1_1:55741820-55741839 | None:intergenic | 30.0% |
| !! | ATTTTTCCTTTTCTAGTGCA+TGG | + | chr1_1:55741876-55741895 | Msa0029940:intron | 30.0% |
| !! | TTTTTCCTTTTCTAGTGCAT+GGG | + | chr1_1:55741877-55741896 | Msa0029940:intron | 30.0% |
| ACTCATAAGTAGTGTAGAAT+GGG | + | chr1_1:55741991-55742010 | Msa0029940:intron | 30.0% | |
| !! | TTTTTAAGGGGTACAATTCA+TGG | + | chr1_1:55742058-55742077 | Msa0029940:intron | 30.0% |
| !! | TTTTAAGGGGTACAATTCAT+GGG | + | chr1_1:55742059-55742078 | Msa0029940:intron | 30.0% |
| ! | CATGGGTATTGTTATAATTC+AGG | + | chr1_1:55742076-55742095 | Msa0029940:intron | 30.0% |
| ! | TGGGTATTGTTATAATTCAG+GGG | + | chr1_1:55742078-55742097 | Msa0029940:intron | 30.0% |
| !! | ATTTTAAGTAGACACAGCAT+TGG | + | chr1_1:55742246-55742265 | Msa0029940:intron | 30.0% |
| ACTCTATATGCCTACATTTA+TGG | + | chr1_1:55742314-55742333 | Msa0029940:intron | 30.0% | |
| AATGACAACTAAAGAAGAGT+TGG | + | chr1_1:55742355-55742374 | Msa0029940:intron | 30.0% | |
| CTAGCTAATGTGTAACTATA+AGG | - | chr1_1:55742406-55742425 | None:intergenic | 30.0% | |
| CACATTAGCTAGTATTCTTA+TGG | + | chr1_1:55742414-55742433 | Msa0029940:intron | 30.0% | |
| !!! | CATTAGTACCTTATTTTCTC+AGG | + | chr1_1:55742501-55742520 | Msa0029940:intron | 30.0% |
| !!! | ACAAATGAACGCTTTTTTTG+AGG | - | chr1_1:55742561-55742580 | None:intergenic | 30.0% |
| ! | TATAGACTAAGAAGCTTTTG+TGG | - | chr1_1:55742666-55742685 | None:intergenic | 30.0% |
| TCAAACAACAAAATATCGTC+AGG | - | chr1_1:55742720-55742739 | None:intergenic | 30.0% | |
| TTTATACCAAGCAATGAGAT+AGG | + | chr1_1:55742753-55742772 | Msa0029940:CDS | 30.0% | |
| TAAAACCCATGCACTAGAAA+AGG | - | chr1_1:55741885-55741904 | None:intergenic | 35.0% | |
| GACTCATAAGTAGTGTAGAA+TGG | + | chr1_1:55741990-55742009 | Msa0029940:intron | 35.0% | |
| ! | TCGTTGCAATGTGGATTAAA+GGG | + | chr1_1:55742196-55742215 | Msa0029940:intron | 35.0% |
| !!! | TAGTACCTTATTTTCTCAGG+TGG | + | chr1_1:55742504-55742523 | Msa0029940:intron | 35.0% |
| !!! | AGTACCTTATTTTCTCAGGT+GGG | + | chr1_1:55742505-55742524 | Msa0029940:intron | 35.0% |
| ! | TTTTCCCACCTGAGAAAATA+AGG | - | chr1_1:55742512-55742531 | None:intergenic | 35.0% |
| !! | AAAAGCGTTCATTTGTAGAG+AGG | + | chr1_1:55742565-55742584 | Msa0029940:intron | 35.0% |
| ! | TTTTGTGGAAACTCATCCAT+TGG | - | chr1_1:55742651-55742670 | None:intergenic | 35.0% |
| GATACTTCTACAGATCAAGA+TGG | + | chr1_1:55742804-55742823 | Msa0029940:CDS | 35.0% | |
| TAAAACCCATGCACTAGAAA+AGG | - | chr1_1:55741885-55741904 | None:intergenic | 35.0% | |
| GACTCATAAGTAGTGTAGAA+TGG | + | chr1_1:55741990-55742009 | Msa0029940:intron | 35.0% | |
| ! | TCGTTGCAATGTGGATTAAA+GGG | + | chr1_1:55742196-55742215 | Msa0029940:intron | 35.0% |
| !!! | TAGTACCTTATTTTCTCAGG+TGG | + | chr1_1:55742504-55742523 | Msa0029940:intron | 35.0% |
| !!! | AGTACCTTATTTTCTCAGGT+GGG | + | chr1_1:55742505-55742524 | Msa0029940:intron | 35.0% |
| ! | TTTTCCCACCTGAGAAAATA+AGG | - | chr1_1:55742512-55742531 | None:intergenic | 35.0% |
| !! | AAAAGCGTTCATTTGTAGAG+AGG | + | chr1_1:55742565-55742584 | Msa0029940:intron | 35.0% |
| ! | TTTTGTGGAAACTCATCCAT+TGG | - | chr1_1:55742651-55742670 | None:intergenic | 35.0% |
| GATACTTCTACAGATCAAGA+TGG | + | chr1_1:55742804-55742823 | Msa0029940:CDS | 35.0% | |
| CCACAAGCGTTACACAATAT+TGG | - | chr1_1:55741632-55741651 | None:intergenic | 40.0% | |
| CCAATATTGTGTAACGCTTG+TGG | + | chr1_1:55741629-55741648 | Msa0029940:CDS | 40.0% | |
| CGCTTGTGGTTTACATTTCA+AGG | + | chr1_1:55741643-55741662 | Msa0029940:CDS | 40.0% | |
| GGTTTACATTTCAAGGCGAA+AGG | + | chr1_1:55741650-55741669 | Msa0029940:CDS | 40.0% | |
| !! | GTGCATGGGTTTTAATGTAG+CGG | + | chr1_1:55741891-55741910 | Msa0029940:intron | 40.0% |
| ATAAGTAGTGTAGAATGGGC+AGG | + | chr1_1:55741995-55742014 | Msa0029940:intron | 40.0% | |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | - | chr1_1:55742123-55742142 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | - | chr1_1:55742124-55742143 | None:intergenic | 40.0% |
| ! | GTCGTTGCAATGTGGATTAA+AGG | + | chr1_1:55742195-55742214 | Msa0029940:intron | 40.0% |
| !! | TGTGGATTAAAGGGTGTTTG+AGG | + | chr1_1:55742205-55742224 | Msa0029940:intron | 40.0% |
| !! | GTGGATTAAAGGGTGTTTGA+GGG | + | chr1_1:55742206-55742225 | Msa0029940:intron | 40.0% |
| TCTTGGATGCATTCGTCTAA+AGG | + | chr1_1:55742776-55742795 | Msa0029940:CDS | 40.0% | |
| CCACAAGCGTTACACAATAT+TGG | - | chr1_1:55741632-55741651 | None:intergenic | 40.0% | |
| CCAATATTGTGTAACGCTTG+TGG | + | chr1_1:55741629-55741648 | Msa0029940:CDS | 40.0% | |
| CGCTTGTGGTTTACATTTCA+AGG | + | chr1_1:55741643-55741662 | Msa0029940:CDS | 40.0% | |
| GGTTTACATTTCAAGGCGAA+AGG | + | chr1_1:55741650-55741669 | Msa0029940:CDS | 40.0% | |
| !! | GTGCATGGGTTTTAATGTAG+CGG | + | chr1_1:55741891-55741910 | Msa0029940:intron | 40.0% |
| ATAAGTAGTGTAGAATGGGC+AGG | + | chr1_1:55741995-55742014 | Msa0029940:intron | 40.0% | |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | - | chr1_1:55742123-55742142 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | - | chr1_1:55742124-55742143 | None:intergenic | 40.0% |
| ! | GTCGTTGCAATGTGGATTAA+AGG | + | chr1_1:55742195-55742214 | Msa0029940:intron | 40.0% |
| !! | TGTGGATTAAAGGGTGTTTG+AGG | + | chr1_1:55742205-55742224 | Msa0029940:intron | 40.0% |
| !! | GTGGATTAAAGGGTGTTTGA+GGG | + | chr1_1:55742206-55742225 | Msa0029940:intron | 40.0% |
| TCTTGGATGCATTCGTCTAA+AGG | + | chr1_1:55742776-55742795 | Msa0029940:CDS | 40.0% | |
| GAAACTCAAGTTTGGCGCAA+AGG | + | chr1_1:55741593-55741612 | Msa0029940:CDS | 45.0% | |
| CACAATATTGGCGTCTCGTA+TGG | - | chr1_1:55741620-55741639 | None:intergenic | 45.0% | |
| CTTCGGGAGATAGTTAGCAA+GGG | - | chr1_1:55741678-55741697 | None:intergenic | 45.0% | |
| TCTTCGGGAGATAGTTAGCA+AGG | - | chr1_1:55741679-55741698 | None:intergenic | 45.0% | |
| ! | TGATTTTGCAGGGCTCTCTT+CGG | - | chr1_1:55741695-55741714 | None:intergenic | 45.0% |
| AGCCCTGCAAAATCAGTCAT+CGG | + | chr1_1:55741700-55741719 | Msa0029940:CDS | 45.0% | |
| !! | GTCCGATGACTGATTTTGCA+GGG | - | chr1_1:55741705-55741724 | None:intergenic | 45.0% |
| ! | CGCTGCTAAAGTTTTCTACG+GGG | - | chr1_1:55742122-55742141 | None:intergenic | 45.0% |
| TGAGAGTTGTCGTTGCAATG+TGG | + | chr1_1:55742187-55742206 | Msa0029940:intron | 45.0% | |
| !! | ATTGGTGTCGGCATCTCTAT+TGG | - | chr1_1:55742615-55742634 | None:intergenic | 45.0% |
| GGAAACTCATCCATTGGTGT+CGG | - | chr1_1:55742645-55742664 | None:intergenic | 45.0% | |
| CCAAGACCTATCTCATTGCT+TGG | - | chr1_1:55742762-55742781 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGTCT+TGG | + | chr1_1:55742759-55742778 | Msa0029940:CDS | 45.0% | |
| GAAACTCAAGTTTGGCGCAA+AGG | + | chr1_1:55741593-55741612 | Msa0029940:CDS | 45.0% | |
| CACAATATTGGCGTCTCGTA+TGG | - | chr1_1:55741620-55741639 | None:intergenic | 45.0% | |
| CTTCGGGAGATAGTTAGCAA+GGG | - | chr1_1:55741678-55741697 | None:intergenic | 45.0% | |
| TCTTCGGGAGATAGTTAGCA+AGG | - | chr1_1:55741679-55741698 | None:intergenic | 45.0% | |
| ! | TGATTTTGCAGGGCTCTCTT+CGG | - | chr1_1:55741695-55741714 | None:intergenic | 45.0% |
| AGCCCTGCAAAATCAGTCAT+CGG | + | chr1_1:55741700-55741719 | Msa0029940:CDS | 45.0% | |
| !! | GTCCGATGACTGATTTTGCA+GGG | - | chr1_1:55741705-55741724 | None:intergenic | 45.0% |
| ! | CGCTGCTAAAGTTTTCTACG+GGG | - | chr1_1:55742122-55742141 | None:intergenic | 45.0% |
| TGAGAGTTGTCGTTGCAATG+TGG | + | chr1_1:55742187-55742206 | Msa0029940:intron | 45.0% | |
| !! | ATTGGTGTCGGCATCTCTAT+TGG | - | chr1_1:55742615-55742634 | None:intergenic | 45.0% |
| GGAAACTCATCCATTGGTGT+CGG | - | chr1_1:55742645-55742664 | None:intergenic | 45.0% | |
| CCAAGACCTATCTCATTGCT+TGG | - | chr1_1:55742762-55742781 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGTCT+TGG | + | chr1_1:55742759-55742778 | Msa0029940:CDS | 45.0% | |
| ! | GATTTTGCAGGGCTCTCTTC+GGG | - | chr1_1:55741694-55741713 | None:intergenic | 50.0% |
| !! | GGTCCGATGACTGATTTTGC+AGG | - | chr1_1:55741706-55741725 | None:intergenic | 50.0% |
| !! | ATTGGTGTCGGCGTCTCTAT+TGG | - | chr1_1:55742633-55742652 | None:intergenic | 50.0% |
| AATAGAGACGCCGACACCAA+TGG | + | chr1_1:55742632-55742651 | Msa0029940:CDS | 50.0% | |
| ! | GATTTTGCAGGGCTCTCTTC+GGG | - | chr1_1:55741694-55741713 | None:intergenic | 50.0% |
| !! | GGTCCGATGACTGATTTTGC+AGG | - | chr1_1:55741706-55741725 | None:intergenic | 50.0% |
| !! | ATTGGTGTCGGCGTCTCTAT+TGG | - | chr1_1:55742633-55742652 | None:intergenic | 50.0% |
| AATAGAGACGCCGACACCAA+TGG | + | chr1_1:55742632-55742651 | Msa0029940:CDS | 50.0% | |
| GTCGGCGTCTCTATTGGTGT+CGG | - | chr1_1:55742627-55742646 | None:intergenic | 55.0% | |
| GTCGGCGTCTCTATTGGTGT+CGG | - | chr1_1:55742627-55742646 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 55741581 | 55742830 | 55741581 | ID=Msa0029940;Name=Msa0029940 |
| chr1_1 | mRNA | 55741581 | 55742830 | 55741581 | ID=Msa0029940-mRNA-1;Parent=Msa0029940;Name=Msa0029940-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0|0.5|2|0|148 |
| chr1_1 | exon | 55741581 | 55741779 | 55741581 | ID=Msa0029940-mRNA-1:exon:16629;Parent=Msa0029940-mRNA-1 |
| chr1_1 | exon | 55742583 | 55742830 | 55742583 | ID=Msa0029940-mRNA-1:exon:16630;Parent=Msa0029940-mRNA-1 |
| chr1_1 | CDS | 55741581 | 55741779 | 55741581 | ID=Msa0029940-mRNA-1:cds;Parent=Msa0029940-mRNA-1 |
| chr1_1 | CDS | 55742583 | 55742830 | 55742583 | ID=Msa0029940-mRNA-1:cds;Parent=Msa0029940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
