Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030120 | XP_003590850.2 | 82.695 | 653 | 48 | 3 | 1 | 588 | 1 | 653 | 0.0 | 1034 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030120 | sp|Q9LUZ4|C3H66_ARATH | 50.000 | 604 | 236 | 20 | 21 | 579 | 2 | 584 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0030120 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030120 | MtrunA17_Chr1g0187591 | 82.695 | 653 | 48 | 3 | 1 | 588 | 1 | 653 | 0.0 | 1034 |
| Msa0030120 | MtrunA17_Chr3g0105131 | 69.965 | 566 | 104 | 7 | 1 | 560 | 1 | 506 | 0.0 | 728 |
| Msa0030120 | MtrunA17_Chr5g0430211 | 53.481 | 675 | 218 | 15 | 1 | 587 | 1 | 667 | 0.0 | 628 |
| Msa0030120 | MtrunA17_Chr3g0105101 | 73.302 | 427 | 59 | 5 | 37 | 462 | 29 | 401 | 0.0 | 604 |
| Msa0030120 | MtrunA17_Chr5g0437251 | 46.483 | 654 | 237 | 16 | 19 | 582 | 13 | 643 | 0.0 | 533 |
| Msa0030120 | MtrunA17_Chr7g0257831 | 41.041 | 653 | 263 | 16 | 33 | 582 | 47 | 680 | 2.71e-146 | 439 |
| Msa0030120 | MtrunA17_Chr3g0113651 | 44.792 | 576 | 193 | 18 | 31 | 579 | 8 | 485 | 2.89e-140 | 417 |
| Msa0030120 | MtrunA17_Chr3g0088521 | 38.323 | 668 | 277 | 19 | 30 | 584 | 42 | 687 | 4.85e-131 | 400 |
| Msa0030120 | MtrunA17_Chr3g0105121 | 54.717 | 371 | 133 | 7 | 222 | 578 | 8 | 357 | 6.31e-121 | 361 |
| Msa0030120 | MtrunA17_Chr1g0171151 | 41.202 | 466 | 218 | 11 | 33 | 451 | 31 | 487 | 8.30e-105 | 328 |
| Msa0030120 | MtrunA17_Chr3g0092171 | 45.706 | 361 | 165 | 6 | 30 | 374 | 80 | 425 | 6.28e-95 | 300 |
| Msa0030120 | MtrunA17_Chr3g0105141 | 68.085 | 141 | 44 | 1 | 188 | 327 | 1 | 141 | 1.22e-68 | 219 |
| Msa0030120 | MtrunA17_Chr3g0092221 | 42.123 | 292 | 133 | 4 | 118 | 378 | 33 | 319 | 1.79e-67 | 224 |
| Msa0030120 | MtrunA17_Chr3g0105151 | 56.637 | 226 | 77 | 5 | 383 | 587 | 1 | 226 | 3.58e-67 | 218 |
| Msa0030120 | MtrunA17_Chr8g0389561 | 54.268 | 164 | 69 | 1 | 219 | 376 | 77 | 240 | 1.00e-55 | 192 |
| Msa0030120 | MtrunA17_Chr6g0487481 | 70.093 | 107 | 32 | 0 | 219 | 325 | 99 | 205 | 1.18e-53 | 187 |
| Msa0030120 | MtrunA17_Chr3g0135351 | 53.571 | 168 | 60 | 5 | 187 | 352 | 25 | 176 | 2.13e-52 | 181 |
| Msa0030120 | MtrunA17_Chr2g0324781 | 62.162 | 111 | 42 | 0 | 223 | 333 | 77 | 187 | 8.86e-49 | 175 |
| Msa0030120 | MtrunA17_Chr4g0040391 | 58.879 | 107 | 44 | 0 | 219 | 325 | 56 | 162 | 2.15e-47 | 168 |
| Msa0030120 | MtrunA17_Chr3g0105111 | 73.864 | 88 | 16 | 2 | 501 | 588 | 1 | 81 | 7.20e-35 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030120 | AT5G58620.1 | 50.000 | 604 | 236 | 20 | 21 | 579 | 2 | 584 | 0.0 | 534 |
| Msa0030120 | AT3G55980.1 | 46.734 | 597 | 250 | 14 | 1 | 579 | 1 | 547 | 1.55e-168 | 492 |
| Msa0030120 | AT3G55980.2 | 46.734 | 597 | 250 | 14 | 1 | 579 | 68 | 614 | 7.00e-168 | 493 |
| Msa0030120 | AT2G40140.2 | 46.667 | 600 | 254 | 17 | 1 | 579 | 1 | 555 | 9.46e-164 | 480 |
| Msa0030120 | AT2G40140.1 | 46.667 | 600 | 254 | 17 | 1 | 579 | 1 | 555 | 9.46e-164 | 480 |
| Msa0030120 | AT5G12850.1 | 42.484 | 612 | 253 | 20 | 25 | 547 | 34 | 635 | 1.33e-138 | 419 |
| Msa0030120 | AT2G41900.1 | 47.558 | 471 | 180 | 9 | 25 | 447 | 40 | 491 | 9.70e-136 | 412 |
| Msa0030120 | AT4G29190.1 | 41.176 | 255 | 114 | 7 | 192 | 435 | 49 | 278 | 1.90e-55 | 191 |
| Msa0030120 | AT5G07500.1 | 61.157 | 121 | 47 | 0 | 205 | 325 | 34 | 154 | 1.01e-52 | 181 |
| Msa0030120 | AT2G19810.1 | 63.115 | 122 | 43 | 1 | 208 | 327 | 61 | 182 | 2.53e-52 | 183 |
| Msa0030120 | AT2G25900.2 | 58.915 | 129 | 53 | 0 | 219 | 347 | 86 | 214 | 4.60e-52 | 181 |
| Msa0030120 | AT2G25900.1 | 58.915 | 129 | 53 | 0 | 219 | 347 | 86 | 214 | 4.60e-52 | 181 |
| Msa0030120 | AT1G03790.1 | 52.258 | 155 | 66 | 3 | 190 | 340 | 53 | 203 | 5.09e-49 | 175 |
| Msa0030120 | AT5G44260.1 | 57.812 | 128 | 49 | 2 | 201 | 327 | 42 | 165 | 1.42e-46 | 168 |
Find 141 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTTCATTGTGCTGTTTC+TGG | 0.137009 | 1_1:+56102951 | Msa0030120:CDS |
| CTTGTCAAACTGGTTTGATT+AGG | 0.230886 | 1_1:+56102637 | Msa0030120:CDS |
| GGTGTGTTGTCTTATATTCT+TGG | 0.275343 | 1_1:+56102879 | Msa0030120:CDS |
| GAACGCCATTATATCATCTT+TGG | 0.288121 | 1_1:-56102724 | None:intergenic |
| TTGTCAAACTGGTTTGATTA+GGG | 0.297404 | 1_1:+56102638 | Msa0030120:CDS |
| GAACTTGAAAATCGCCTTAC+AGG | 0.298409 | 1_1:+56103863 | Msa0030120:CDS |
| ACGTTCTGCCTTCTCTGGTT+GGG | 0.305180 | 1_1:+56104162 | Msa0030120:CDS |
| TATATAGTACAGATGAATTT+AGG | 0.309340 | 1_1:+56103264 | Msa0030120:CDS |
| GACGATTTCCTTAAGAAAAT+AGG | 0.314739 | 1_1:+56103143 | Msa0030120:CDS |
| CTTGTTGTTGCTCCACCATT+TGG | 0.317761 | 1_1:-56103169 | None:intergenic |
| CTTATGGTTGCTGCTTTGTT+TGG | 0.322501 | 1_1:+56102849 | Msa0030120:CDS |
| GAACGCAAACCAGCAACTTT+GGG | 0.343416 | 1_1:+56103988 | Msa0030120:CDS |
| GAGTGCCCCTTTGTTCATCC+TGG | 0.343455 | 1_1:+56103341 | Msa0030120:CDS |
| GTGTCCCTTGCCCTGAGTTT+CGG | 0.346896 | 1_1:+56103408 | Msa0030120:CDS |
| AATAGAAAACCTTGTCAAAC+TGG | 0.348122 | 1_1:+56102627 | Msa0030120:CDS |
| TGTTGATCAAATTCCATTGT+TGG | 0.356576 | 1_1:-56104352 | None:intergenic |
| CAAGGGCTTATTCTCATGAT+TGG | 0.357705 | 1_1:+56103315 | Msa0030120:CDS |
| TCTCCTTCAAATAGGCTTGC+AGG | 0.358629 | 1_1:+56103893 | Msa0030120:CDS |
| AAGGATTTCCCCAAAGTTGC+TGG | 0.362798 | 1_1:-56103997 | None:intergenic |
| TTCAGCCAAAGATGATATAA+TGG | 0.367048 | 1_1:+56102719 | Msa0030120:CDS |
| GCAAACCCTTCTCGTGCATC+TGG | 0.369951 | 1_1:-56103534 | None:intergenic |
| TGATGCAATCACATTTGAAT+TGG | 0.372010 | 1_1:-56104029 | None:intergenic |
| TTCACCAAGTGCTTCTTCAA+TGG | 0.385276 | 1_1:+56103640 | Msa0030120:CDS |
| AGAACGCAAACCAGCAACTT+TGG | 0.391215 | 1_1:+56103987 | Msa0030120:CDS |
| GAAGGTTGGATCAAAAGAAA+TGG | 0.391384 | 1_1:+56102806 | Msa0030120:CDS |
| TGAAGAGAGGACACCTCTTA+TGG | 0.399251 | 1_1:+56102833 | Msa0030120:CDS |
| AACGTTCTGCCTTCTCTGGT+TGG | 0.399281 | 1_1:+56104161 | Msa0030120:CDS |
| TTGTCTTATATTCTTGGAAC+CGG | 0.399584 | 1_1:+56102885 | Msa0030120:CDS |
| GTCTTGCATCTCCTTCAAAT+AGG | 0.399881 | 1_1:+56103885 | Msa0030120:CDS |
| CCGCTGATGCAAACGGTAAC+CGG | 0.400035 | 1_1:+56103036 | Msa0030120:CDS |
| ATGGAACGTTCTGCCTTCTC+TGG | 0.406240 | 1_1:+56104157 | Msa0030120:CDS |
| GTGAATCAACCCAAGATTCA+TGG | 0.407246 | 1_1:-56104315 | None:intergenic |
| TTTGAATTGGTAAGATCAAA+AGG | 0.409476 | 1_1:-56104016 | None:intergenic |
| TGTTGCGCTCAATAAAGCTT+TGG | 0.411592 | 1_1:-56104087 | None:intergenic |
| CTAAGAGTATCTTCGGTTCA+AGG | 0.415813 | 1_1:+56103084 | Msa0030120:CDS |
| TCAAAGTGAAGCCTTGTTCA+AGG | 0.431149 | 1_1:+56103297 | Msa0030120:CDS |
| TGCTGCTTTGTTTGGAAGCA+AGG | 0.432478 | 1_1:+56102857 | Msa0030120:CDS |
| TCTGGTTGGGGCTCTCCTGA+TGG | 0.432980 | 1_1:+56104175 | Msa0030120:CDS |
| CGTTCTGCCTTCTCTGGTTG+GGG | 0.438457 | 1_1:+56104163 | Msa0030120:CDS |
| TATATTCCATTCTTTATGTC+AGG | 0.439563 | 1_1:-56103245 | None:intergenic |
| GTCAGGTAGGGATGGATCAA+TGG | 0.440308 | 1_1:-56103228 | None:intergenic |
| AGTGCCCCTTTGTTCATCCT+GGG | 0.442388 | 1_1:+56103342 | Msa0030120:CDS |
| AACAAAGCAGCAACCATAAG+AGG | 0.442942 | 1_1:-56102846 | None:intergenic |
| ACCGAGCGTGCGGCTCAGAT+AGG | 0.449079 | 1_1:+56102922 | Msa0030120:CDS |
| TTCTGCTAGCTCAGTTGCCA+TGG | 0.451503 | 1_1:+56104138 | Msa0030120:CDS |
| AAGGTTGGATCAAAAGAAAT+GGG | 0.451915 | 1_1:+56102807 | Msa0030120:CDS |
| TCGGTTTCTAAGAGTATCTT+CGG | 0.453417 | 1_1:+56103077 | Msa0030120:CDS |
| GGAAGGGATCATGCAACAAA+GGG | 0.458959 | 1_1:+56103429 | Msa0030120:CDS |
| ACTCCTGCAAGCCTATTTGA+AGG | 0.462316 | 1_1:-56103896 | None:intergenic |
| TTATGGTATGGAAGGAAGGT+TGG | 0.462581 | 1_1:+56102792 | Msa0030120:CDS |
| CATGATCCCTTCCGAAACTC+AGG | 0.476678 | 1_1:-56103419 | None:intergenic |
| CCCTATCTGAGCCGCACGCT+CGG | 0.476697 | 1_1:-56102923 | None:intergenic |
| ATTGAGTTCATTGCCGCGGA+TGG | 0.478340 | 1_1:-56104212 | None:intergenic |
| GTTGATTCACTTGTGAATGA+TGG | 0.479955 | 1_1:+56104328 | Msa0030120:CDS |
| TCCATTCTTTATGTCAGGTA+GGG | 0.481887 | 1_1:-56103240 | None:intergenic |
| TTCTTTATGTCAGGTAGGGA+TGG | 0.483088 | 1_1:-56103236 | None:intergenic |
| TACAACGGTCGAAGCTCCTC+TGG | 0.485266 | 1_1:-56103572 | None:intergenic |
| GCAGCATCATCGCCTACGGC+TGG | 0.487982 | 1_1:+56103731 | Msa0030120:CDS |
| GAAAATAGGTTTCCAAATGG+TGG | 0.491205 | 1_1:+56103157 | Msa0030120:CDS |
| CTTCTCGGCATCTGAAGGGT+AGG | 0.494265 | 1_1:-56103794 | None:intergenic |
| ATCTGCTTCTCGGCATCTGA+AGG | 0.497474 | 1_1:-56103799 | None:intergenic |
| AGCCTTGTTCTGTATTGAGC+AGG | 0.498591 | 1_1:-56103497 | None:intergenic |
| GGGTGAAGGTAGAGCAGAAC+CGG | 0.500946 | 1_1:-56103603 | None:intergenic |
| CCCTTGCCCTGAGTTTCGGA+AGG | 0.503997 | 1_1:+56103412 | Msa0030120:CDS |
| AGGGTTATGGTATGGAAGGA+AGG | 0.505824 | 1_1:+56102788 | Msa0030120:CDS |
| TCCCTACCTGACATAAAGAA+TGG | 0.512480 | 1_1:+56103239 | Msa0030120:CDS |
| CGACCGTTGTATACTTCTAC+CGG | 0.516646 | 1_1:+56103584 | Msa0030120:CDS |
| TAAGAAAATAGGTTTCCAAA+TGG | 0.517234 | 1_1:+56103154 | Msa0030120:CDS |
| CAAAGTGAAGCCTTGTTCAA+GGG | 0.517860 | 1_1:+56103298 | Msa0030120:CDS |
| TCAGGTAGGGATGGATCAAT+GGG | 0.518358 | 1_1:-56103227 | None:intergenic |
| GCTTTGGCTCCGCTTCGAAA+AGG | 0.520561 | 1_1:-56104071 | None:intergenic |
| AAGTAGGGTTATGGTATGGA+AGG | 0.522426 | 1_1:+56102784 | Msa0030120:CDS |
| GTGCAGTGACTTGATTGTCT+CGG | 0.522663 | 1_1:+56103058 | Msa0030120:CDS |
| CCCTTCCGAAACTCAGGGCA+AGG | 0.525679 | 1_1:-56103413 | None:intergenic |
| GATCATGATGTTGATGAAGT+AGG | 0.526063 | 1_1:+56102768 | Msa0030120:CDS |
| ATGTTGATGAAGTAGGGTTA+TGG | 0.527912 | 1_1:+56102775 | Msa0030120:CDS |
| GTATCTTCGGTTCAAGGAAG+AGG | 0.528667 | 1_1:+56103090 | Msa0030120:CDS |
| CCGGTTACCGTTTGCATCAG+CGG | 0.529093 | 1_1:-56103036 | None:intergenic |
| GCTGCTTTGTTTGGAAGCAA+GGG | 0.529208 | 1_1:+56102858 | Msa0030120:CDS |
| ATCATGATGTTGATGAAGTA+GGG | 0.530587 | 1_1:+56102769 | Msa0030120:CDS |
| AAGGAGATGCAAGACCTGTA+AGG | 0.541933 | 1_1:-56103877 | None:intergenic |
| AGGAGAGCCCCAACCAGAGA+AGG | 0.547335 | 1_1:-56104170 | None:intergenic |
| CCGAGCGTGCGGCTCAGATA+GGG | 0.547437 | 1_1:+56102923 | Msa0030120:CDS |
| CTCCTGATGGAAAATTAGAC+TGG | 0.548612 | 1_1:+56104188 | Msa0030120:CDS |
| CGGAAGGGATCATGCAACAA+AGG | 0.550435 | 1_1:+56103428 | Msa0030120:CDS |
| CAGAAGTAGCACTTCAACAA+TGG | 0.550435 | 1_1:+56104252 | Msa0030120:CDS |
| TTCTCGGCATCTGAAGGGTA+GGG | 0.550744 | 1_1:-56103793 | None:intergenic |
| TTCATCCTGGGGAAAATGCA+AGG | 0.557730 | 1_1:+56103354 | Msa0030120:CDS |
| GTTAGTTCCGCTGATGCAAA+CGG | 0.558347 | 1_1:+56103029 | Msa0030120:CDS |
| TCGGTTAACATCAACGCGGC+CGG | 0.559271 | 1_1:-56102904 | None:intergenic |
| ATCTGCAGCATCATCGCCTA+CGG | 0.562339 | 1_1:+56103727 | Msa0030120:CDS |
| TGAAACCAGATGCACGAGAA+GGG | 0.568595 | 1_1:+56103529 | Msa0030120:CDS |
| GGTGAATTTGAATATGATGT+GGG | 0.570481 | 1_1:-56103623 | None:intergenic |
| TTCCATTCTTTATGTCAGGT+AGG | 0.576271 | 1_1:-56103241 | None:intergenic |
| AGAGAAGGCAGAACGTTCCA+TGG | 0.578816 | 1_1:-56104155 | None:intergenic |
| GTGCCCCTTTGTTCATCCTG+GGG | 0.580017 | 1_1:+56103343 | Msa0030120:CDS |
| CATGTGTAATGATATTTCAT+CGG | 0.580467 | 1_1:-56103386 | None:intergenic |
| GTGGAGCAACAACAAGATGT+AGG | 0.581426 | 1_1:+56103176 | Msa0030120:CDS |
| TTGATTAGGGAAAATGAATG+TGG | 0.584217 | 1_1:+56102651 | Msa0030120:CDS |
| CTAATCAAACCAGTTTGACA+AGG | 0.588552 | 1_1:-56102636 | None:intergenic |
| TTGTTCTGCTGCTTCTGCCG+AGG | 0.591938 | 1_1:+56102974 | Msa0030120:CDS |
| GCAATGAACTCAATAAAATG+AGG | 0.593274 | 1_1:+56104221 | Msa0030120:CDS |
| ATGAAACCAGATGCACGAGA+AGG | 0.597986 | 1_1:+56103528 | Msa0030120:CDS |
| CCTTGCCCTGAGTTTCGGAA+GGG | 0.598605 | 1_1:+56103413 | Msa0030120:CDS |
| ATACAGAACAAGGCTTTGCA+AGG | 0.598747 | 1_1:+56103505 | Msa0030120:CDS |
| GTAGGCGATGATGCTGCAGA+TGG | 0.600318 | 1_1:-56103725 | None:intergenic |
| TGCCACATGGTTCCAGCCGT+AGG | 0.601454 | 1_1:-56103743 | None:intergenic |
| TGATGCACTTGTATTGATGT+CGG | 0.604850 | 1_1:-56103965 | None:intergenic |
| GATGAAGTAGGGTTATGGTA+TGG | 0.604921 | 1_1:+56102780 | Msa0030120:CDS |
| GAATCCATTGAAGAAGCACT+TGG | 0.606204 | 1_1:-56103644 | None:intergenic |
| TTGGCTGAAAACTCAAGCAA+AGG | 0.608890 | 1_1:-56102705 | None:intergenic |
| TGGTGAATTTGAATATGATG+TGG | 0.620600 | 1_1:-56103624 | None:intergenic |
| TCTGCTTCTCGGCATCTGAA+GGG | 0.621299 | 1_1:-56103798 | None:intergenic |
| ATGGCAACTGAGCTAGCAGA+AGG | 0.621567 | 1_1:-56104136 | None:intergenic |
| AAGAAATGGGATATGAAGAG+AGG | 0.624986 | 1_1:+56102820 | Msa0030120:CDS |
| AACGCAAACCAGCAACTTTG+GGG | 0.627454 | 1_1:+56103989 | Msa0030120:CDS |
| TGAGAATAAGCCCTTGAACA+AGG | 0.627841 | 1_1:-56103308 | None:intergenic |
| AAAACAAAAGTCATGTGCAA+CGG | 0.630659 | 1_1:+56102600 | None:intergenic |
| AAGCAAAAGTTTGACAACCT+CGG | 0.631058 | 1_1:-56102991 | None:intergenic |
| ATCCTGCTCAATACAGAACA+AGG | 0.635511 | 1_1:+56103495 | Msa0030120:CDS |
| AATGATATTTCATCGGATCA+CGG | 0.635978 | 1_1:-56103379 | None:intergenic |
| CTGAATCTGAGTCTGCCACA+TGG | 0.636502 | 1_1:-56103756 | None:intergenic |
| TTTGAATATGATGTGGGTGA+AGG | 0.636666 | 1_1:-56103617 | None:intergenic |
| TGTGAATGATGGTCCAACAA+TGG | 0.642483 | 1_1:+56104339 | Msa0030120:CDS |
| GCAGATTGTATCAAAGAAGA+CGG | 0.643659 | 1_1:-56103683 | None:intergenic |
| CCTTCCGAAACTCAGGGCAA+GGG | 0.646387 | 1_1:-56103412 | None:intergenic |
| AGACAATCAAGTCACTGCAC+CGG | 0.647436 | 1_1:-56103055 | None:intergenic |
| GTTGATGTTAACCGAGCGTG+CGG | 0.649710 | 1_1:+56102912 | Msa0030120:CDS |
| GATGCTGCAGATGGAGTCAA+AGG | 0.650089 | 1_1:-56103716 | None:intergenic |
| ATGATCCCTTCCGAAACTCA+GGG | 0.652947 | 1_1:-56103418 | None:intergenic |
| AAATTAGACTGGTCCATCCG+CGG | 0.659387 | 1_1:+56104199 | Msa0030120:CDS |
| TCAAGGAAGAGGATACTACA+AGG | 0.674650 | 1_1:+56103101 | Msa0030120:CDS |
| ACAAGGCAATGTTGATGACG+AGG | 0.685237 | 1_1:+56103118 | Msa0030120:CDS |
| CGCCTACGGCTGGAACCATG+TGG | 0.694097 | 1_1:+56103741 | Msa0030120:CDS |
| GCTGCAGATGGAGTCAAAGG+TGG | 0.696337 | 1_1:-56103713 | None:intergenic |
| TTTCCCCAGGATGAACAAAG+GGG | 0.706386 | 1_1:-56103346 | None:intergenic |
| GAAGGGATCATGCAACAAAG+GGG | 0.715610 | 1_1:+56103430 | Msa0030120:CDS |
| AGAAACAGCACAATGAAGAG+CGG | 0.722067 | 1_1:-56102949 | None:intergenic |
| GATGCTTGTGAATATGCACA+TGG | 0.754358 | 1_1:+56103452 | Msa0030120:CDS |
| GAACCGGTAGAAGTATACAA+CGG | 0.778404 | 1_1:-56103587 | None:intergenic |
| ACGCTCGGTTAACATCAACG+CGG | 0.858999 | 1_1:-56102908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAGTACAGATGAATTT+AGG | + | chr1_1:56103264-56103283 | Msa0030120:CDS | 20.0% |
| !! | TATATAGTACAGATGAATTT+AGG | + | chr1_1:56103264-56103283 | Msa0030120:CDS | 20.0% |
| !! | TTTGGAAACCTATTTTCTTA+AGG | - | chr1_1:56103154-56103173 | None:intergenic | 25.0% |
| ! | TAAGAAAATAGGTTTCCAAA+TGG | + | chr1_1:56103154-56103173 | Msa0030120:CDS | 25.0% |
| ! | TATATTCCATTCTTTATGTC+AGG | - | chr1_1:56103248-56103267 | None:intergenic | 25.0% |
| ! | CATGTGTAATGATATTTCAT+CGG | - | chr1_1:56103389-56103408 | None:intergenic | 25.0% |
| !!! | AAAATGTTTTCAAGGTTAGT+AGG | - | chr1_1:56103926-56103945 | None:intergenic | 25.0% |
| !! | ACTAACCTTGAAAACATTTT+CGG | + | chr1_1:56103926-56103945 | Msa0030120:CDS | 25.0% |
| ! | TTTGAATTGGTAAGATCAAA+AGG | - | chr1_1:56104019-56104038 | None:intergenic | 25.0% |
| ! | TCATGGCTTAAAAATATATC+TGG | - | chr1_1:56104301-56104320 | None:intergenic | 25.0% |
| !!! | TATTTTTAAGCCATGAATCT+TGG | + | chr1_1:56104305-56104324 | Msa0030120:CDS | 25.0% |
| !!! | ATTTTTAAGCCATGAATCTT+GGG | + | chr1_1:56104306-56104325 | Msa0030120:CDS | 25.0% |
| !! | TTTGGAAACCTATTTTCTTA+AGG | - | chr1_1:56103154-56103173 | None:intergenic | 25.0% |
| ! | TAAGAAAATAGGTTTCCAAA+TGG | + | chr1_1:56103154-56103173 | Msa0030120:CDS | 25.0% |
| ! | TATATTCCATTCTTTATGTC+AGG | - | chr1_1:56103248-56103267 | None:intergenic | 25.0% |
| ! | CATGTGTAATGATATTTCAT+CGG | - | chr1_1:56103389-56103408 | None:intergenic | 25.0% |
| !!! | AAAATGTTTTCAAGGTTAGT+AGG | - | chr1_1:56103926-56103945 | None:intergenic | 25.0% |
| !! | ACTAACCTTGAAAACATTTT+CGG | + | chr1_1:56103926-56103945 | Msa0030120:CDS | 25.0% |
| ! | TTTGAATTGGTAAGATCAAA+AGG | - | chr1_1:56104019-56104038 | None:intergenic | 25.0% |
| ! | TCATGGCTTAAAAATATATC+TGG | - | chr1_1:56104301-56104320 | None:intergenic | 25.0% |
| !!! | TATTTTTAAGCCATGAATCT+TGG | + | chr1_1:56104305-56104324 | Msa0030120:CDS | 25.0% |
| !!! | ATTTTTAAGCCATGAATCTT+GGG | + | chr1_1:56104306-56104325 | Msa0030120:CDS | 25.0% |
| AATAGAAAACCTTGTCAAAC+TGG | + | chr1_1:56102627-56102646 | Msa0030120:CDS | 30.0% | |
| !! | TTGTCAAACTGGTTTGATTA+GGG | + | chr1_1:56102638-56102657 | Msa0030120:CDS | 30.0% |
| TTGATTAGGGAAAATGAATG+TGG | + | chr1_1:56102651-56102670 | Msa0030120:CDS | 30.0% | |
| TTCAGCCAAAGATGATATAA+TGG | + | chr1_1:56102719-56102738 | Msa0030120:CDS | 30.0% | |
| ! | ATCATGATGTTGATGAAGTA+GGG | + | chr1_1:56102769-56102788 | Msa0030120:CDS | 30.0% |
| AAGGTTGGATCAAAAGAAAT+GGG | + | chr1_1:56102807-56102826 | Msa0030120:CDS | 30.0% | |
| TTGTCTTATATTCTTGGAAC+CGG | + | chr1_1:56102885-56102904 | Msa0030120:CDS | 30.0% | |
| GACGATTTCCTTAAGAAAAT+AGG | + | chr1_1:56103143-56103162 | Msa0030120:CDS | 30.0% | |
| AATGATATTTCATCGGATCA+CGG | - | chr1_1:56103382-56103401 | None:intergenic | 30.0% | |
| GGTGAATTTGAATATGATGT+GGG | - | chr1_1:56103626-56103645 | None:intergenic | 30.0% | |
| TGGTGAATTTGAATATGATG+TGG | - | chr1_1:56103627-56103646 | None:intergenic | 30.0% | |
| ! | CTAACCTTGAAAACATTTTC+GGG | + | chr1_1:56103927-56103946 | Msa0030120:CDS | 30.0% |
| TGATGCAATCACATTTGAAT+TGG | - | chr1_1:56104032-56104051 | None:intergenic | 30.0% | |
| GCAATGAACTCAATAAAATG+AGG | + | chr1_1:56104221-56104240 | Msa0030120:CDS | 30.0% | |
| TGTTGATCAAATTCCATTGT+TGG | - | chr1_1:56104355-56104374 | None:intergenic | 30.0% | |
| AATAGAAAACCTTGTCAAAC+TGG | + | chr1_1:56102627-56102646 | Msa0030120:CDS | 30.0% | |
| !! | TTGTCAAACTGGTTTGATTA+GGG | + | chr1_1:56102638-56102657 | Msa0030120:CDS | 30.0% |
| TTGATTAGGGAAAATGAATG+TGG | + | chr1_1:56102651-56102670 | Msa0030120:CDS | 30.0% | |
| TTCAGCCAAAGATGATATAA+TGG | + | chr1_1:56102719-56102738 | Msa0030120:CDS | 30.0% | |
| ! | ATCATGATGTTGATGAAGTA+GGG | + | chr1_1:56102769-56102788 | Msa0030120:CDS | 30.0% |
| AAGGTTGGATCAAAAGAAAT+GGG | + | chr1_1:56102807-56102826 | Msa0030120:CDS | 30.0% | |
| TTGTCTTATATTCTTGGAAC+CGG | + | chr1_1:56102885-56102904 | Msa0030120:CDS | 30.0% | |
| GACGATTTCCTTAAGAAAAT+AGG | + | chr1_1:56103143-56103162 | Msa0030120:CDS | 30.0% | |
| AATGATATTTCATCGGATCA+CGG | - | chr1_1:56103382-56103401 | None:intergenic | 30.0% | |
| GGTGAATTTGAATATGATGT+GGG | - | chr1_1:56103626-56103645 | None:intergenic | 30.0% | |
| TGGTGAATTTGAATATGATG+TGG | - | chr1_1:56103627-56103646 | None:intergenic | 30.0% | |
| ! | CTAACCTTGAAAACATTTTC+GGG | + | chr1_1:56103927-56103946 | Msa0030120:CDS | 30.0% |
| TGATGCAATCACATTTGAAT+TGG | - | chr1_1:56104032-56104051 | None:intergenic | 30.0% | |
| GCAATGAACTCAATAAAATG+AGG | + | chr1_1:56104221-56104240 | Msa0030120:CDS | 30.0% | |
| TGTTGATCAAATTCCATTGT+TGG | - | chr1_1:56104355-56104374 | None:intergenic | 30.0% | |
| CTAATCAAACCAGTTTGACA+AGG | - | chr1_1:56102639-56102658 | None:intergenic | 35.0% | |
| !! | CTTGTCAAACTGGTTTGATT+AGG | + | chr1_1:56102637-56102656 | Msa0030120:CDS | 35.0% |
| GAACGCCATTATATCATCTT+TGG | - | chr1_1:56102727-56102746 | None:intergenic | 35.0% | |
| ! | GATCATGATGTTGATGAAGT+AGG | + | chr1_1:56102768-56102787 | Msa0030120:CDS | 35.0% |
| ! | ATGTTGATGAAGTAGGGTTA+TGG | + | chr1_1:56102775-56102794 | Msa0030120:CDS | 35.0% |
| GAAGGTTGGATCAAAAGAAA+TGG | + | chr1_1:56102806-56102825 | Msa0030120:CDS | 35.0% | |
| AAGAAATGGGATATGAAGAG+AGG | + | chr1_1:56102820-56102839 | Msa0030120:CDS | 35.0% | |
| GGTGTGTTGTCTTATATTCT+TGG | + | chr1_1:56102879-56102898 | Msa0030120:CDS | 35.0% | |
| AAGCAAAAGTTTGACAACCT+CGG | - | chr1_1:56102994-56103013 | None:intergenic | 35.0% | |
| !! | TCGGTTTCTAAGAGTATCTT+CGG | + | chr1_1:56103077-56103096 | Msa0030120:CDS | 35.0% |
| GAAAATAGGTTTCCAAATGG+TGG | + | chr1_1:56103157-56103176 | Msa0030120:CDS | 35.0% | |
| TCCATTCTTTATGTCAGGTA+GGG | - | chr1_1:56103243-56103262 | None:intergenic | 35.0% | |
| TTCCATTCTTTATGTCAGGT+AGG | - | chr1_1:56103244-56103263 | None:intergenic | 35.0% | |
| !! | CACATGGTATTTTTGAATGC+TGG | + | chr1_1:56103468-56103487 | Msa0030120:CDS | 35.0% |
| TTTGAATATGATGTGGGTGA+AGG | - | chr1_1:56103620-56103639 | None:intergenic | 35.0% | |
| GCAGATTGTATCAAAGAAGA+CGG | - | chr1_1:56103686-56103705 | None:intergenic | 35.0% | |
| !!! | GCAGTTTTAAATCTGCTTCT+CGG | - | chr1_1:56103812-56103831 | None:intergenic | 35.0% |
| ! | ATGACCCGAAAATGTTTTCA+AGG | - | chr1_1:56103934-56103953 | None:intergenic | 35.0% |
| ! | TGATGCACTTGTATTGATGT+CGG | - | chr1_1:56103968-56103987 | None:intergenic | 35.0% |
| ! | TTTTATTGAGTTCATTGCCG+CGG | - | chr1_1:56104219-56104238 | None:intergenic | 35.0% |
| ! | GTTGATTCACTTGTGAATGA+TGG | + | chr1_1:56104328-56104347 | Msa0030120:CDS | 35.0% |
| CTAATCAAACCAGTTTGACA+AGG | - | chr1_1:56102639-56102658 | None:intergenic | 35.0% | |
| !! | CTTGTCAAACTGGTTTGATT+AGG | + | chr1_1:56102637-56102656 | Msa0030120:CDS | 35.0% |
| GAACGCCATTATATCATCTT+TGG | - | chr1_1:56102727-56102746 | None:intergenic | 35.0% | |
| ! | GATCATGATGTTGATGAAGT+AGG | + | chr1_1:56102768-56102787 | Msa0030120:CDS | 35.0% |
| ! | ATGTTGATGAAGTAGGGTTA+TGG | + | chr1_1:56102775-56102794 | Msa0030120:CDS | 35.0% |
| GAAGGTTGGATCAAAAGAAA+TGG | + | chr1_1:56102806-56102825 | Msa0030120:CDS | 35.0% | |
| AAGAAATGGGATATGAAGAG+AGG | + | chr1_1:56102820-56102839 | Msa0030120:CDS | 35.0% | |
| GGTGTGTTGTCTTATATTCT+TGG | + | chr1_1:56102879-56102898 | Msa0030120:CDS | 35.0% | |
| AAGCAAAAGTTTGACAACCT+CGG | - | chr1_1:56102994-56103013 | None:intergenic | 35.0% | |
| !! | TCGGTTTCTAAGAGTATCTT+CGG | + | chr1_1:56103077-56103096 | Msa0030120:CDS | 35.0% |
| GAAAATAGGTTTCCAAATGG+TGG | + | chr1_1:56103157-56103176 | Msa0030120:CDS | 35.0% | |
| TCCATTCTTTATGTCAGGTA+GGG | - | chr1_1:56103243-56103262 | None:intergenic | 35.0% | |
| TTCCATTCTTTATGTCAGGT+AGG | - | chr1_1:56103244-56103263 | None:intergenic | 35.0% | |
| !! | CACATGGTATTTTTGAATGC+TGG | + | chr1_1:56103468-56103487 | Msa0030120:CDS | 35.0% |
| TTTGAATATGATGTGGGTGA+AGG | - | chr1_1:56103620-56103639 | None:intergenic | 35.0% | |
| GCAGATTGTATCAAAGAAGA+CGG | - | chr1_1:56103686-56103705 | None:intergenic | 35.0% | |
| !!! | GCAGTTTTAAATCTGCTTCT+CGG | - | chr1_1:56103812-56103831 | None:intergenic | 35.0% |
| ! | ATGACCCGAAAATGTTTTCA+AGG | - | chr1_1:56103934-56103953 | None:intergenic | 35.0% |
| ! | TGATGCACTTGTATTGATGT+CGG | - | chr1_1:56103968-56103987 | None:intergenic | 35.0% |
| ! | TTTTATTGAGTTCATTGCCG+CGG | - | chr1_1:56104219-56104238 | None:intergenic | 35.0% |
| ! | GTTGATTCACTTGTGAATGA+TGG | + | chr1_1:56104328-56104347 | Msa0030120:CDS | 35.0% |
| TTGGCTGAAAACTCAAGCAA+AGG | - | chr1_1:56102708-56102727 | None:intergenic | 40.0% | |
| GATGAAGTAGGGTTATGGTA+TGG | + | chr1_1:56102780-56102799 | Msa0030120:CDS | 40.0% | |
| AAGTAGGGTTATGGTATGGA+AGG | + | chr1_1:56102784-56102803 | Msa0030120:CDS | 40.0% | |
| TTATGGTATGGAAGGAAGGT+TGG | + | chr1_1:56102792-56102811 | Msa0030120:CDS | 40.0% | |
| AACAAAGCAGCAACCATAAG+AGG | - | chr1_1:56102849-56102868 | None:intergenic | 40.0% | |
| !! | CTTATGGTTGCTGCTTTGTT+TGG | + | chr1_1:56102849-56102868 | Msa0030120:CDS | 40.0% |
| AGAAACAGCACAATGAAGAG+CGG | - | chr1_1:56102952-56102971 | None:intergenic | 40.0% | |
| !! | CTAAGAGTATCTTCGGTTCA+AGG | + | chr1_1:56103084-56103103 | Msa0030120:CDS | 40.0% |
| TCAAGGAAGAGGATACTACA+AGG | + | chr1_1:56103101-56103120 | Msa0030120:CDS | 40.0% | |
| TTCTTTATGTCAGGTAGGGA+TGG | - | chr1_1:56103239-56103258 | None:intergenic | 40.0% | |
| TCCCTACCTGACATAAAGAA+TGG | + | chr1_1:56103239-56103258 | Msa0030120:CDS | 40.0% | |
| !! | TCAAAGTGAAGCCTTGTTCA+AGG | + | chr1_1:56103297-56103316 | Msa0030120:CDS | 40.0% |
| !! | CAAAGTGAAGCCTTGTTCAA+GGG | + | chr1_1:56103298-56103317 | Msa0030120:CDS | 40.0% |
| TGAGAATAAGCCCTTGAACA+AGG | - | chr1_1:56103311-56103330 | None:intergenic | 40.0% | |
| CAAGGGCTTATTCTCATGAT+TGG | + | chr1_1:56103315-56103334 | Msa0030120:CDS | 40.0% | |
| ! | TTTTCCCCAGGATGAACAAA+GGG | - | chr1_1:56103350-56103369 | None:intergenic | 40.0% |
| ! | ATTTTCCCCAGGATGAACAA+AGG | - | chr1_1:56103351-56103370 | None:intergenic | 40.0% |
| GATGCTTGTGAATATGCACA+TGG | + | chr1_1:56103452-56103471 | Msa0030120:CDS | 40.0% | |
| ATCCTGCTCAATACAGAACA+AGG | + | chr1_1:56103495-56103514 | Msa0030120:CDS | 40.0% | |
| ATACAGAACAAGGCTTTGCA+AGG | + | chr1_1:56103505-56103524 | Msa0030120:CDS | 40.0% | |
| ! | GAACCGGTAGAAGTATACAA+CGG | - | chr1_1:56103590-56103609 | None:intergenic | 40.0% |
| TTCACCAAGTGCTTCTTCAA+TGG | + | chr1_1:56103640-56103659 | Msa0030120:CDS | 40.0% | |
| !! | GAATCCATTGAAGAAGCACT+TGG | - | chr1_1:56103647-56103666 | None:intergenic | 40.0% |
| GAACTTGAAAATCGCCTTAC+AGG | + | chr1_1:56103863-56103882 | Msa0030120:CDS | 40.0% | |
| GTCTTGCATCTCCTTCAAAT+AGG | + | chr1_1:56103885-56103904 | Msa0030120:CDS | 40.0% | |
| TGTTGCGCTCAATAAAGCTT+TGG | - | chr1_1:56104090-56104109 | None:intergenic | 40.0% | |
| CTCCTGATGGAAAATTAGAC+TGG | + | chr1_1:56104188-56104207 | Msa0030120:CDS | 40.0% | |
| ! | GACCAGTCTAATTTTCCATC+AGG | - | chr1_1:56104193-56104212 | None:intergenic | 40.0% |
| CAGAAGTAGCACTTCAACAA+TGG | + | chr1_1:56104252-56104271 | Msa0030120:CDS | 40.0% | |
| GTGAATCAACCCAAGATTCA+TGG | - | chr1_1:56104318-56104337 | None:intergenic | 40.0% | |
| TGTGAATGATGGTCCAACAA+TGG | + | chr1_1:56104339-56104358 | Msa0030120:CDS | 40.0% | |
| TTGGCTGAAAACTCAAGCAA+AGG | - | chr1_1:56102708-56102727 | None:intergenic | 40.0% | |
| GATGAAGTAGGGTTATGGTA+TGG | + | chr1_1:56102780-56102799 | Msa0030120:CDS | 40.0% | |
| AAGTAGGGTTATGGTATGGA+AGG | + | chr1_1:56102784-56102803 | Msa0030120:CDS | 40.0% | |
| TTATGGTATGGAAGGAAGGT+TGG | + | chr1_1:56102792-56102811 | Msa0030120:CDS | 40.0% | |
| AACAAAGCAGCAACCATAAG+AGG | - | chr1_1:56102849-56102868 | None:intergenic | 40.0% | |
| !! | CTTATGGTTGCTGCTTTGTT+TGG | + | chr1_1:56102849-56102868 | Msa0030120:CDS | 40.0% |
| AGAAACAGCACAATGAAGAG+CGG | - | chr1_1:56102952-56102971 | None:intergenic | 40.0% | |
| !! | CTAAGAGTATCTTCGGTTCA+AGG | + | chr1_1:56103084-56103103 | Msa0030120:CDS | 40.0% |
| TCAAGGAAGAGGATACTACA+AGG | + | chr1_1:56103101-56103120 | Msa0030120:CDS | 40.0% | |
| TTCTTTATGTCAGGTAGGGA+TGG | - | chr1_1:56103239-56103258 | None:intergenic | 40.0% | |
| TCCCTACCTGACATAAAGAA+TGG | + | chr1_1:56103239-56103258 | Msa0030120:CDS | 40.0% | |
| !! | TCAAAGTGAAGCCTTGTTCA+AGG | + | chr1_1:56103297-56103316 | Msa0030120:CDS | 40.0% |
| !! | CAAAGTGAAGCCTTGTTCAA+GGG | + | chr1_1:56103298-56103317 | Msa0030120:CDS | 40.0% |
| TGAGAATAAGCCCTTGAACA+AGG | - | chr1_1:56103311-56103330 | None:intergenic | 40.0% | |
| CAAGGGCTTATTCTCATGAT+TGG | + | chr1_1:56103315-56103334 | Msa0030120:CDS | 40.0% | |
| ! | TTTTCCCCAGGATGAACAAA+GGG | - | chr1_1:56103350-56103369 | None:intergenic | 40.0% |
| ! | ATTTTCCCCAGGATGAACAA+AGG | - | chr1_1:56103351-56103370 | None:intergenic | 40.0% |
| GATGCTTGTGAATATGCACA+TGG | + | chr1_1:56103452-56103471 | Msa0030120:CDS | 40.0% | |
| ATCCTGCTCAATACAGAACA+AGG | + | chr1_1:56103495-56103514 | Msa0030120:CDS | 40.0% | |
| ATACAGAACAAGGCTTTGCA+AGG | + | chr1_1:56103505-56103524 | Msa0030120:CDS | 40.0% | |
| ! | GAACCGGTAGAAGTATACAA+CGG | - | chr1_1:56103590-56103609 | None:intergenic | 40.0% |
| TTCACCAAGTGCTTCTTCAA+TGG | + | chr1_1:56103640-56103659 | Msa0030120:CDS | 40.0% | |
| !! | GAATCCATTGAAGAAGCACT+TGG | - | chr1_1:56103647-56103666 | None:intergenic | 40.0% |
| GAACTTGAAAATCGCCTTAC+AGG | + | chr1_1:56103863-56103882 | Msa0030120:CDS | 40.0% | |
| GTCTTGCATCTCCTTCAAAT+AGG | + | chr1_1:56103885-56103904 | Msa0030120:CDS | 40.0% | |
| TGTTGCGCTCAATAAAGCTT+TGG | - | chr1_1:56104090-56104109 | None:intergenic | 40.0% | |
| CTCCTGATGGAAAATTAGAC+TGG | + | chr1_1:56104188-56104207 | Msa0030120:CDS | 40.0% | |
| ! | GACCAGTCTAATTTTCCATC+AGG | - | chr1_1:56104193-56104212 | None:intergenic | 40.0% |
| CAGAAGTAGCACTTCAACAA+TGG | + | chr1_1:56104252-56104271 | Msa0030120:CDS | 40.0% | |
| GTGAATCAACCCAAGATTCA+TGG | - | chr1_1:56104318-56104337 | None:intergenic | 40.0% | |
| TGTGAATGATGGTCCAACAA+TGG | + | chr1_1:56104339-56104358 | Msa0030120:CDS | 40.0% | |
| AGGGTTATGGTATGGAAGGA+AGG | + | chr1_1:56102788-56102807 | Msa0030120:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | chr1_1:56102833-56102852 | Msa0030120:CDS | 45.0% | |
| !! | TGCTGCTTTGTTTGGAAGCA+AGG | + | chr1_1:56102857-56102876 | Msa0030120:CDS | 45.0% |
| !! | GCTGCTTTGTTTGGAAGCAA+GGG | + | chr1_1:56102858-56102877 | Msa0030120:CDS | 45.0% |
| !! | GCTCTTCATTGTGCTGTTTC+TGG | + | chr1_1:56102951-56102970 | Msa0030120:CDS | 45.0% |
| GTTAGTTCCGCTGATGCAAA+CGG | + | chr1_1:56103029-56103048 | Msa0030120:CDS | 45.0% | |
| AGACAATCAAGTCACTGCAC+CGG | - | chr1_1:56103058-56103077 | None:intergenic | 45.0% | |
| GTGCAGTGACTTGATTGTCT+CGG | + | chr1_1:56103058-56103077 | Msa0030120:CDS | 45.0% | |
| GTATCTTCGGTTCAAGGAAG+AGG | + | chr1_1:56103090-56103109 | Msa0030120:CDS | 45.0% | |
| !! | ACAAGGCAATGTTGATGACG+AGG | + | chr1_1:56103118-56103137 | Msa0030120:CDS | 45.0% |
| !! | CTTGTTGTTGCTCCACCATT+TGG | - | chr1_1:56103172-56103191 | None:intergenic | 45.0% |
| GTGGAGCAACAACAAGATGT+AGG | + | chr1_1:56103176-56103195 | Msa0030120:CDS | 45.0% | |
| TCAGGTAGGGATGGATCAAT+GGG | - | chr1_1:56103230-56103249 | None:intergenic | 45.0% | |
| TTTCCCCAGGATGAACAAAG+GGG | - | chr1_1:56103349-56103368 | None:intergenic | 45.0% | |
| TTCATCCTGGGGAAAATGCA+AGG | + | chr1_1:56103354-56103373 | Msa0030120:CDS | 45.0% | |
| ATGATCCCTTCCGAAACTCA+GGG | - | chr1_1:56103421-56103440 | None:intergenic | 45.0% | |
| GGAAGGGATCATGCAACAAA+GGG | + | chr1_1:56103429-56103448 | Msa0030120:CDS | 45.0% | |
| GAAGGGATCATGCAACAAAG+GGG | + | chr1_1:56103430-56103449 | Msa0030120:CDS | 45.0% | |
| !! | AGCCTTGTTCTGTATTGAGC+AGG | - | chr1_1:56103500-56103519 | None:intergenic | 45.0% |
| ATGAAACCAGATGCACGAGA+AGG | + | chr1_1:56103528-56103547 | Msa0030120:CDS | 45.0% | |
| TGAAACCAGATGCACGAGAA+GGG | + | chr1_1:56103529-56103548 | Msa0030120:CDS | 45.0% | |
| !! | CTTTTTCGCTCACAAACCAG+AGG | + | chr1_1:56103556-56103575 | Msa0030120:CDS | 45.0% |
| CGACCGTTGTATACTTCTAC+CGG | + | chr1_1:56103584-56103603 | Msa0030120:CDS | 45.0% | |
| AAGGAGATGCAAGACCTGTA+AGG | - | chr1_1:56103880-56103899 | None:intergenic | 45.0% | |
| TCTCCTTCAAATAGGCTTGC+AGG | + | chr1_1:56103893-56103912 | Msa0030120:CDS | 45.0% | |
| ACTCCTGCAAGCCTATTTGA+AGG | - | chr1_1:56103899-56103918 | None:intergenic | 45.0% | |
| AGAACGCAAACCAGCAACTT+TGG | + | chr1_1:56103987-56104006 | Msa0030120:CDS | 45.0% | |
| GAACGCAAACCAGCAACTTT+GGG | + | chr1_1:56103988-56104007 | Msa0030120:CDS | 45.0% | |
| AACGCAAACCAGCAACTTTG+GGG | + | chr1_1:56103989-56104008 | Msa0030120:CDS | 45.0% | |
| AAGGATTTCCCCAAAGTTGC+TGG | - | chr1_1:56104000-56104019 | None:intergenic | 45.0% | |
| !!! | GAGTTGATGCCTTTTCGAAG+CGG | + | chr1_1:56104062-56104081 | Msa0030120:CDS | 45.0% |
| ! | AAATTAGACTGGTCCATCCG+CGG | + | chr1_1:56104199-56104218 | Msa0030120:CDS | 45.0% |
| AGGGTTATGGTATGGAAGGA+AGG | + | chr1_1:56102788-56102807 | Msa0030120:CDS | 45.0% | |
| TGAAGAGAGGACACCTCTTA+TGG | + | chr1_1:56102833-56102852 | Msa0030120:CDS | 45.0% | |
| !! | TGCTGCTTTGTTTGGAAGCA+AGG | + | chr1_1:56102857-56102876 | Msa0030120:CDS | 45.0% |
| !! | GCTGCTTTGTTTGGAAGCAA+GGG | + | chr1_1:56102858-56102877 | Msa0030120:CDS | 45.0% |
| !! | GCTCTTCATTGTGCTGTTTC+TGG | + | chr1_1:56102951-56102970 | Msa0030120:CDS | 45.0% |
| GTTAGTTCCGCTGATGCAAA+CGG | + | chr1_1:56103029-56103048 | Msa0030120:CDS | 45.0% | |
| AGACAATCAAGTCACTGCAC+CGG | - | chr1_1:56103058-56103077 | None:intergenic | 45.0% | |
| GTGCAGTGACTTGATTGTCT+CGG | + | chr1_1:56103058-56103077 | Msa0030120:CDS | 45.0% | |
| GTATCTTCGGTTCAAGGAAG+AGG | + | chr1_1:56103090-56103109 | Msa0030120:CDS | 45.0% | |
| !! | ACAAGGCAATGTTGATGACG+AGG | + | chr1_1:56103118-56103137 | Msa0030120:CDS | 45.0% |
| !! | CTTGTTGTTGCTCCACCATT+TGG | - | chr1_1:56103172-56103191 | None:intergenic | 45.0% |
| GTGGAGCAACAACAAGATGT+AGG | + | chr1_1:56103176-56103195 | Msa0030120:CDS | 45.0% | |
| TCAGGTAGGGATGGATCAAT+GGG | - | chr1_1:56103230-56103249 | None:intergenic | 45.0% | |
| TTTCCCCAGGATGAACAAAG+GGG | - | chr1_1:56103349-56103368 | None:intergenic | 45.0% | |
| TTCATCCTGGGGAAAATGCA+AGG | + | chr1_1:56103354-56103373 | Msa0030120:CDS | 45.0% | |
| ATGATCCCTTCCGAAACTCA+GGG | - | chr1_1:56103421-56103440 | None:intergenic | 45.0% | |
| GGAAGGGATCATGCAACAAA+GGG | + | chr1_1:56103429-56103448 | Msa0030120:CDS | 45.0% | |
| GAAGGGATCATGCAACAAAG+GGG | + | chr1_1:56103430-56103449 | Msa0030120:CDS | 45.0% | |
| !! | AGCCTTGTTCTGTATTGAGC+AGG | - | chr1_1:56103500-56103519 | None:intergenic | 45.0% |
| ATGAAACCAGATGCACGAGA+AGG | + | chr1_1:56103528-56103547 | Msa0030120:CDS | 45.0% | |
| TGAAACCAGATGCACGAGAA+GGG | + | chr1_1:56103529-56103548 | Msa0030120:CDS | 45.0% | |
| !! | CTTTTTCGCTCACAAACCAG+AGG | + | chr1_1:56103556-56103575 | Msa0030120:CDS | 45.0% |
| CGACCGTTGTATACTTCTAC+CGG | + | chr1_1:56103584-56103603 | Msa0030120:CDS | 45.0% | |
| AAGGAGATGCAAGACCTGTA+AGG | - | chr1_1:56103880-56103899 | None:intergenic | 45.0% | |
| TCTCCTTCAAATAGGCTTGC+AGG | + | chr1_1:56103893-56103912 | Msa0030120:CDS | 45.0% | |
| ACTCCTGCAAGCCTATTTGA+AGG | - | chr1_1:56103899-56103918 | None:intergenic | 45.0% | |
| AGAACGCAAACCAGCAACTT+TGG | + | chr1_1:56103987-56104006 | Msa0030120:CDS | 45.0% | |
| GAACGCAAACCAGCAACTTT+GGG | + | chr1_1:56103988-56104007 | Msa0030120:CDS | 45.0% | |
| AACGCAAACCAGCAACTTTG+GGG | + | chr1_1:56103989-56104008 | Msa0030120:CDS | 45.0% | |
| AAGGATTTCCCCAAAGTTGC+TGG | - | chr1_1:56104000-56104019 | None:intergenic | 45.0% | |
| !!! | GAGTTGATGCCTTTTCGAAG+CGG | + | chr1_1:56104062-56104081 | Msa0030120:CDS | 45.0% |
| ! | AAATTAGACTGGTCCATCCG+CGG | + | chr1_1:56104199-56104218 | Msa0030120:CDS | 45.0% |
| ACGCTCGGTTAACATCAACG+CGG | - | chr1_1:56102911-56102930 | None:intergenic | 50.0% | |
| GTTGATGTTAACCGAGCGTG+CGG | + | chr1_1:56102912-56102931 | Msa0030120:CDS | 50.0% | |
| GTCAGGTAGGGATGGATCAA+TGG | - | chr1_1:56103231-56103250 | None:intergenic | 50.0% | |
| AGTGCCCCTTTGTTCATCCT+GGG | + | chr1_1:56103342-56103361 | Msa0030120:CDS | 50.0% | |
| CATGATCCCTTCCGAAACTC+AGG | - | chr1_1:56103422-56103441 | None:intergenic | 50.0% | |
| CGGAAGGGATCATGCAACAA+AGG | + | chr1_1:56103428-56103447 | Msa0030120:CDS | 50.0% | |
| GATGCTGCAGATGGAGTCAA+AGG | - | chr1_1:56103719-56103738 | None:intergenic | 50.0% | |
| ATCTGCAGCATCATCGCCTA+CGG | + | chr1_1:56103727-56103746 | Msa0030120:CDS | 50.0% | |
| CTGAATCTGAGTCTGCCACA+TGG | - | chr1_1:56103759-56103778 | None:intergenic | 50.0% | |
| TTCTCGGCATCTGAAGGGTA+GGG | - | chr1_1:56103796-56103815 | None:intergenic | 50.0% | |
| TCTGCTTCTCGGCATCTGAA+GGG | - | chr1_1:56103801-56103820 | None:intergenic | 50.0% | |
| ATCTGCTTCTCGGCATCTGA+AGG | - | chr1_1:56103802-56103821 | None:intergenic | 50.0% | |
| ATGGCAACTGAGCTAGCAGA+AGG | - | chr1_1:56104139-56104158 | None:intergenic | 50.0% | |
| TTCTGCTAGCTCAGTTGCCA+TGG | + | chr1_1:56104138-56104157 | Msa0030120:CDS | 50.0% | |
| AGAGAAGGCAGAACGTTCCA+TGG | - | chr1_1:56104158-56104177 | None:intergenic | 50.0% | |
| ATGGAACGTTCTGCCTTCTC+TGG | + | chr1_1:56104157-56104176 | Msa0030120:CDS | 50.0% | |
| AACGTTCTGCCTTCTCTGGT+TGG | + | chr1_1:56104161-56104180 | Msa0030120:CDS | 50.0% | |
| ACGTTCTGCCTTCTCTGGTT+GGG | + | chr1_1:56104162-56104181 | Msa0030120:CDS | 50.0% | |
| ATTGAGTTCATTGCCGCGGA+TGG | - | chr1_1:56104215-56104234 | None:intergenic | 50.0% | |
| ACGCTCGGTTAACATCAACG+CGG | - | chr1_1:56102911-56102930 | None:intergenic | 50.0% | |
| GTTGATGTTAACCGAGCGTG+CGG | + | chr1_1:56102912-56102931 | Msa0030120:CDS | 50.0% | |
| GTCAGGTAGGGATGGATCAA+TGG | - | chr1_1:56103231-56103250 | None:intergenic | 50.0% | |
| AGTGCCCCTTTGTTCATCCT+GGG | + | chr1_1:56103342-56103361 | Msa0030120:CDS | 50.0% | |
| CATGATCCCTTCCGAAACTC+AGG | - | chr1_1:56103422-56103441 | None:intergenic | 50.0% | |
| CGGAAGGGATCATGCAACAA+AGG | + | chr1_1:56103428-56103447 | Msa0030120:CDS | 50.0% | |
| GATGCTGCAGATGGAGTCAA+AGG | - | chr1_1:56103719-56103738 | None:intergenic | 50.0% | |
| ATCTGCAGCATCATCGCCTA+CGG | + | chr1_1:56103727-56103746 | Msa0030120:CDS | 50.0% | |
| CTGAATCTGAGTCTGCCACA+TGG | - | chr1_1:56103759-56103778 | None:intergenic | 50.0% | |
| TTCTCGGCATCTGAAGGGTA+GGG | - | chr1_1:56103796-56103815 | None:intergenic | 50.0% | |
| TCTGCTTCTCGGCATCTGAA+GGG | - | chr1_1:56103801-56103820 | None:intergenic | 50.0% | |
| ATCTGCTTCTCGGCATCTGA+AGG | - | chr1_1:56103802-56103821 | None:intergenic | 50.0% | |
| ATGGCAACTGAGCTAGCAGA+AGG | - | chr1_1:56104139-56104158 | None:intergenic | 50.0% | |
| TTCTGCTAGCTCAGTTGCCA+TGG | + | chr1_1:56104138-56104157 | Msa0030120:CDS | 50.0% | |
| AGAGAAGGCAGAACGTTCCA+TGG | - | chr1_1:56104158-56104177 | None:intergenic | 50.0% | |
| ATGGAACGTTCTGCCTTCTC+TGG | + | chr1_1:56104157-56104176 | Msa0030120:CDS | 50.0% | |
| AACGTTCTGCCTTCTCTGGT+TGG | + | chr1_1:56104161-56104180 | Msa0030120:CDS | 50.0% | |
| ACGTTCTGCCTTCTCTGGTT+GGG | + | chr1_1:56104162-56104181 | Msa0030120:CDS | 50.0% | |
| ATTGAGTTCATTGCCGCGGA+TGG | - | chr1_1:56104215-56104234 | None:intergenic | 50.0% | |
| TCGGTTAACATCAACGCGGC+CGG | - | chr1_1:56102907-56102926 | None:intergenic | 55.0% | |
| ! | TTGTTCTGCTGCTTCTGCCG+AGG | + | chr1_1:56102974-56102993 | Msa0030120:CDS | 55.0% |
| CCGGTTACCGTTTGCATCAG+CGG | - | chr1_1:56103039-56103058 | None:intergenic | 55.0% | |
| CCGCTGATGCAAACGGTAAC+CGG | + | chr1_1:56103036-56103055 | Msa0030120:CDS | 55.0% | |
| GAGTGCCCCTTTGTTCATCC+TGG | + | chr1_1:56103341-56103360 | Msa0030120:CDS | 55.0% | |
| GTGCCCCTTTGTTCATCCTG+GGG | + | chr1_1:56103343-56103362 | Msa0030120:CDS | 55.0% | |
| GTGTCCCTTGCCCTGAGTTT+CGG | + | chr1_1:56103408-56103427 | Msa0030120:CDS | 55.0% | |
| CCTTCCGAAACTCAGGGCAA+GGG | - | chr1_1:56103415-56103434 | None:intergenic | 55.0% | |
| CCTTGCCCTGAGTTTCGGAA+GGG | + | chr1_1:56103413-56103432 | Msa0030120:CDS | 55.0% | |
| GCAAACCCTTCTCGTGCATC+TGG | - | chr1_1:56103537-56103556 | None:intergenic | 55.0% | |
| TACAACGGTCGAAGCTCCTC+TGG | - | chr1_1:56103575-56103594 | None:intergenic | 55.0% | |
| GGGTGAAGGTAGAGCAGAAC+CGG | - | chr1_1:56103606-56103625 | None:intergenic | 55.0% | |
| GCTGCAGATGGAGTCAAAGG+TGG | - | chr1_1:56103716-56103735 | None:intergenic | 55.0% | |
| GTAGGCGATGATGCTGCAGA+TGG | - | chr1_1:56103728-56103747 | None:intergenic | 55.0% | |
| CTTCTCGGCATCTGAAGGGT+AGG | - | chr1_1:56103797-56103816 | None:intergenic | 55.0% | |
| ! | GCTTTGGCTCCGCTTCGAAA+AGG | - | chr1_1:56104074-56104093 | None:intergenic | 55.0% |
| CGTTCTGCCTTCTCTGGTTG+GGG | + | chr1_1:56104163-56104182 | Msa0030120:CDS | 55.0% | |
| TCGGTTAACATCAACGCGGC+CGG | - | chr1_1:56102907-56102926 | None:intergenic | 55.0% | |
| ! | TTGTTCTGCTGCTTCTGCCG+AGG | + | chr1_1:56102974-56102993 | Msa0030120:CDS | 55.0% |
| CCGGTTACCGTTTGCATCAG+CGG | - | chr1_1:56103039-56103058 | None:intergenic | 55.0% | |
| CCGCTGATGCAAACGGTAAC+CGG | + | chr1_1:56103036-56103055 | Msa0030120:CDS | 55.0% | |
| GAGTGCCCCTTTGTTCATCC+TGG | + | chr1_1:56103341-56103360 | Msa0030120:CDS | 55.0% | |
| GTGCCCCTTTGTTCATCCTG+GGG | + | chr1_1:56103343-56103362 | Msa0030120:CDS | 55.0% | |
| GTGTCCCTTGCCCTGAGTTT+CGG | + | chr1_1:56103408-56103427 | Msa0030120:CDS | 55.0% | |
| CCTTCCGAAACTCAGGGCAA+GGG | - | chr1_1:56103415-56103434 | None:intergenic | 55.0% | |
| CCTTGCCCTGAGTTTCGGAA+GGG | + | chr1_1:56103413-56103432 | Msa0030120:CDS | 55.0% | |
| GCAAACCCTTCTCGTGCATC+TGG | - | chr1_1:56103537-56103556 | None:intergenic | 55.0% | |
| TACAACGGTCGAAGCTCCTC+TGG | - | chr1_1:56103575-56103594 | None:intergenic | 55.0% | |
| GGGTGAAGGTAGAGCAGAAC+CGG | - | chr1_1:56103606-56103625 | None:intergenic | 55.0% | |
| GCTGCAGATGGAGTCAAAGG+TGG | - | chr1_1:56103716-56103735 | None:intergenic | 55.0% | |
| GTAGGCGATGATGCTGCAGA+TGG | - | chr1_1:56103728-56103747 | None:intergenic | 55.0% | |
| CTTCTCGGCATCTGAAGGGT+AGG | - | chr1_1:56103797-56103816 | None:intergenic | 55.0% | |
| ! | GCTTTGGCTCCGCTTCGAAA+AGG | - | chr1_1:56104074-56104093 | None:intergenic | 55.0% |
| CGTTCTGCCTTCTCTGGTTG+GGG | + | chr1_1:56104163-56104182 | Msa0030120:CDS | 55.0% | |
| CCCTTGCCCTGAGTTTCGGA+AGG | + | chr1_1:56103412-56103431 | Msa0030120:CDS | 60.0% | |
| CCCTTCCGAAACTCAGGGCA+AGG | - | chr1_1:56103416-56103435 | None:intergenic | 60.0% | |
| TGCCACATGGTTCCAGCCGT+AGG | - | chr1_1:56103746-56103765 | None:intergenic | 60.0% | |
| AGGAGAGCCCCAACCAGAGA+AGG | - | chr1_1:56104173-56104192 | None:intergenic | 60.0% | |
| TCTGGTTGGGGCTCTCCTGA+TGG | + | chr1_1:56104175-56104194 | Msa0030120:CDS | 60.0% | |
| CCCTTGCCCTGAGTTTCGGA+AGG | + | chr1_1:56103412-56103431 | Msa0030120:CDS | 60.0% | |
| CCCTTCCGAAACTCAGGGCA+AGG | - | chr1_1:56103416-56103435 | None:intergenic | 60.0% | |
| TGCCACATGGTTCCAGCCGT+AGG | - | chr1_1:56103746-56103765 | None:intergenic | 60.0% | |
| AGGAGAGCCCCAACCAGAGA+AGG | - | chr1_1:56104173-56104192 | None:intergenic | 60.0% | |
| TCTGGTTGGGGCTCTCCTGA+TGG | + | chr1_1:56104175-56104194 | Msa0030120:CDS | 60.0% | |
| ACCGAGCGTGCGGCTCAGAT+AGG | + | chr1_1:56102922-56102941 | Msa0030120:CDS | 65.0% | |
| CCCTATCTGAGCCGCACGCT+CGG | - | chr1_1:56102926-56102945 | None:intergenic | 65.0% | |
| CCGAGCGTGCGGCTCAGATA+GGG | + | chr1_1:56102923-56102942 | Msa0030120:CDS | 65.0% | |
| ! | CGGCGCCTTGCATTTTCCCC+AGG | - | chr1_1:56103362-56103381 | None:intergenic | 65.0% |
| GCAGCATCATCGCCTACGGC+TGG | + | chr1_1:56103731-56103750 | Msa0030120:CDS | 65.0% | |
| CGCCTACGGCTGGAACCATG+TGG | + | chr1_1:56103741-56103760 | Msa0030120:CDS | 65.0% | |
| ACCGAGCGTGCGGCTCAGAT+AGG | + | chr1_1:56102922-56102941 | Msa0030120:CDS | 65.0% | |
| CCCTATCTGAGCCGCACGCT+CGG | - | chr1_1:56102926-56102945 | None:intergenic | 65.0% | |
| CCGAGCGTGCGGCTCAGATA+GGG | + | chr1_1:56102923-56102942 | Msa0030120:CDS | 65.0% | |
| ! | CGGCGCCTTGCATTTTCCCC+AGG | - | chr1_1:56103362-56103381 | None:intergenic | 65.0% |
| GCAGCATCATCGCCTACGGC+TGG | + | chr1_1:56103731-56103750 | Msa0030120:CDS | 65.0% | |
| CGCCTACGGCTGGAACCATG+TGG | + | chr1_1:56103741-56103760 | Msa0030120:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 56102612 | 56104378 | 56102612 | ID=Msa0030120;Name=Msa0030120 |
| chr1_1 | mRNA | 56102612 | 56104378 | 56102612 | ID=Msa0030120-mRNA-1;Parent=Msa0030120;Name=Msa0030120-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|588 |
| chr1_1 | exon | 56102612 | 56104378 | 56102612 | ID=Msa0030120-mRNA-1:exon:16753;Parent=Msa0030120-mRNA-1 |
| chr1_1 | CDS | 56102612 | 56104378 | 56102612 | ID=Msa0030120-mRNA-1:cds;Parent=Msa0030120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
