AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030460 MtrunA17_Chr3g0082121 73.913 207 51 2 236 439 486 692 2.69e-90 292
Msa0030460 MtrunA17_Chr3g0082121 64.626 147 51 1 87 233 2 147 8.81e-54 194
Msa0030460 MtrunA17_Chr5g0401121 65.891 129 40 1 105 233 36 160 2.18e-48 165
Msa0030460 MtrunA17_Chr1g0203721 42.012 169 90 3 239 399 518 686 8.24e-28 118
Msa0030460 MtrunA17_Chr1g0203721 37.984 129 78 2 120 247 54 181 1.17e-21 99.4
Msa0030460 MtrunA17_Chr6g0458391 41.447 152 75 4 93 240 194 335 2.10e-26 114
Msa0030460 MtrunA17_Chr6g0458391 47.170 106 52 2 240 341 661 766 1.61e-21 99.0
Msa0030460 MtrunA17_Chr6g0458391 42.857 112 62 2 129 240 91 200 8.96e-19 90.1
Msa0030460 MtrunA17_Chr2g0324011 30.147 272 162 8 104 355 320 583 2.95e-24 107
Msa0030460 MtrunA17_Chr2g0324011 42.478 113 61 3 129 240 10 119 8.41e-16 80.5
Msa0030460 MtrunA17_Chr3g0118611 34.911 169 97 5 242 402 398 561 2.59e-17 85.5
Msa0030460 MtrunA17_Chr7g0238821 40.909 110 61 3 133 241 1 107 4.92e-17 77.0
Msa0030460 MtrunA17_Chr7g0233911 34.507 142 78 4 97 231 3 136 9.01e-17 79.3
Msa0030460 MtrunA17_Chr5g0448511 31.073 177 113 3 242 412 294 467 3.22e-16 81.6
Msa0030460 MtrunA17_Chr4g0033611 39.655 116 64 3 129 242 76 187 4.09e-16 78.6
Msa0030460 MtrunA17_Chr5g0448761 31.937 191 121 6 242 426 522 709 4.51e-16 81.6
Msa0030460 MtrunA17_Chr5g0448761 38.261 115 68 1 129 240 60 174 1.34e-15 80.1
Msa0030460 MtrunA17_Chr2g0329421 40.187 107 58 3 129 233 27 129 9.64e-16 76.3
Msa0030460 MtrunA17_Chr5g0440451 33.735 166 103 4 242 402 501 664 1.91e-15 79.7
Msa0030460 MtrunA17_Chr7g0258861 42.105 114 61 4 129 240 10 120 4.74e-15 76.3
Msa0030460 MtrunA17_Chr8g0363841 29.801 151 96 4 200 340 427 577 1.55e-14 76.6
Msa0030460 MtrunA17_Chr2g0287651 28.125 224 133 7 220 433 507 712 1.73e-14 76.6
Msa0030460 MtrunA17_Chr3g0080351 35.088 114 63 2 287 397 570 675 9.32e-14 74.3
Msa0030460 MtrunA17_Chr3g0078041 38.462 104 62 2 129 231 50 152 1.20e-13 70.9
Msa0030460 MtrunA17_Chr1g0207551 31.609 174 102 6 208 374 455 618 1.33e-13 73.9
Msa0030460 MtrunA17_Chr2g0329031 28.638 213 128 10 246 442 464 668 4.31e-13 72.4
Msa0030460 MtrunA17_Chr2g0329031 33.929 112 68 3 124 233 7 114 1.39e-11 67.4
Msa0030460 MtrunA17_Chr2g0287061 33.043 115 63 3 242 346 597 707 8.80e-13 71.2
Msa0030460 MtrunA17_Chr2g0329361 36.190 105 64 2 129 231 61 164 1.05e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030460 AT2G27110.2 36.196 163 95 5 242 398 476 635 6.24e-19 91.3
Msa0030460 AT2G27110.1 36.196 163 95 5 242 398 476 635 6.24e-19 91.3
Msa0030460 AT2G27110.3 36.196 163 95 5 242 398 331 490 7.29e-19 90.9
Msa0030460 AT3G22170.2 36.184 152 75 5 244 385 518 657 8.85e-19 90.9
Msa0030460 AT3G22170.1 36.184 152 75 5 244 385 518 657 8.85e-19 90.9
Msa0030460 AT3G59470.3 36.486 148 82 3 96 233 27 172 3.97e-16 79.0
Msa0030460 AT3G59470.1 36.486 148 82 3 96 233 27 172 3.97e-16 79.0
Msa0030460 AT3G59470.2 36.486 148 82 3 96 233 39 184 5.10e-16 79.0
Msa0030460 AT4G12850.4 38.739 111 64 3 122 232 4 110 4.65e-15 72.8
Msa0030460 AT5G18960.2 29.213 178 116 5 227 397 608 782 4.84e-15 79.0
Msa0030460 AT5G18960.1 29.213 178 116 5 227 397 608 782 4.84e-15 79.0
Msa0030460 AT1G76320.1 31.720 186 105 9 209 385 412 584 5.82e-15 78.6
Msa0030460 AT1G76320.4 31.720 186 105 9 209 385 412 584 5.82e-15 78.6
Msa0030460 AT1G76320.2 31.720 186 105 9 209 385 412 584 6.23e-15 78.6
Msa0030460 AT4G12850.2 38.739 111 64 3 122 232 4 110 6.67e-15 72.4
Msa0030460 AT1G76320.3 31.720 186 105 9 209 385 412 584 8.49e-15 78.2
Msa0030460 AT4G12850.1 38.739 111 64 3 122 232 4 110 8.94e-15 73.2
Msa0030460 AT4G38180.1 31.638 177 99 4 104 259 46 221 2.26e-14 76.6
Msa0030460 AT4G38180.1 30.061 163 109 3 242 399 531 693 7.73e-13 72.0
Msa0030460 AT3G06250.2 29.878 164 108 4 227 383 584 747 2.73e-14 76.6
Msa0030460 AT3G06250.1 29.878 164 108 4 227 383 584 747 2.73e-14 76.6
Msa0030460 AT3G06250.3 29.878 164 108 4 227 383 584 747 2.73e-14 76.6
Msa0030460 AT4G15090.1 29.000 200 128 4 209 402 475 666 6.09e-14 75.5
Msa0030460 AT4G15090.5 29.000 200 128 4 209 402 475 666 6.09e-14 75.5
Msa0030460 AT4G15090.3 29.000 200 128 4 209 402 475 666 6.09e-14 75.5
Msa0030460 AT4G15090.2 29.000 200 128 4 209 402 475 666 6.09e-14 75.5
Msa0030460 AT4G15090.4 29.000 200 128 4 209 402 475 666 6.09e-14 75.5
Msa0030460 AT3G07500.1 40.000 105 62 1 129 233 33 136 1.63e-13 70.5
Msa0030460 AT4G19990.6 31.707 164 94 3 242 395 455 610 2.63e-13 73.6
Msa0030460 AT4G19990.2 31.707 164 94 3 242 395 455 610 2.63e-13 73.6
Msa0030460 AT4G19990.3 32.738 168 87 4 242 395 455 610 2.90e-13 73.2
Msa0030460 AT4G19990.4 32.738 168 87 4 242 395 455 610 2.90e-13 73.2
Msa0030460 AT4G19990.1 32.738 168 87 4 242 395 398 553 3.16e-13 73.2
Msa0030460 AT4G19990.5 32.738 168 87 4 242 395 455 610 3.24e-13 73.2
Msa0030460 AT4G19990.7 32.738 168 87 4 242 395 469 624 3.52e-13 72.8
Msa0030460 AT2G43280.1 38.318 107 58 3 129 231 22 124 1.57e-12 67.4
Msa0030460 AT2G32250.2 27.326 172 114 3 232 397 439 605 5.99e-12 68.9
Msa0030460 AT2G32250.4 27.326 172 114 3 232 397 439 605 5.99e-12 68.9
Msa0030460 AT2G32250.6 27.326 172 114 3 232 397 439 605 6.16e-12 68.9
Msa0030460 AT2G32250.1 27.326 172 114 3 232 397 439 605 6.16e-12 68.9
Msa0030460 AT2G32250.3 27.326 172 114 3 232 397 439 605 6.16e-12 68.9
Msa0030460 AT2G32250.5 27.326 172 114 3 232 397 439 605 6.57e-12 68.9
Msa0030460 AT2G32250.8 27.326 172 114 3 232 397 398 564 7.18e-12 68.9
Msa0030460 AT2G32250.7 27.326 172 114 3 232 397 398 564 7.51e-12 68.6

Find 136 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATATTCTTTGGTTATTC+AGG 0.181312 1_1:+56824725 Msa0030460:CDS
CGCTTAAGTATATAGGTTTC+AGG 0.211352 1_1:-56827073 None:intergenic
TTCAGATTGTGTCAATAAAT+TGG 0.215486 1_1:+56826290 Msa0030460:intron
TTCATCATTTGCAATTGATA+TGG 0.235636 1_1:-56827350 None:intergenic
AGAGGTGGCTTCGATGATTA+TGG 0.243284 1_1:-56825658 None:intergenic
CAAAGAATATTCTTTGTTCA+TGG 0.262754 1_1:-56824715 None:intergenic
TGCGGTGGCGGCGGCGGCAG+TGG 0.274581 1_1:+56829612 Msa0030460:CDS
TTTGGTATTCGTCGAGAATA+TGG 0.287007 1_1:+56826447 Msa0030460:CDS
CATGAACAAAGAATATTCTT+TGG 0.296597 1_1:+56824716 Msa0030460:CDS
AAGTATGTGGATGGAGAATC+AGG 0.314708 1_1:+56827310 Msa0030460:CDS
TCTGCTCTAGGCTCCCCTTT+TGG 0.322934 1_1:-56826558 None:intergenic
TGTCCATCGCTTAAGTATAT+AGG 0.330247 1_1:-56827080 None:intergenic
GGCAGTGGCGGCGGTGGCGA+TGG 0.333214 1_1:+56829627 Msa0030460:CDS
AATGAGTATAGTAAAAGAAT+TGG 0.336174 1_1:+56826423 Msa0030460:CDS
GGCGGCGGCGGCAGTGGCGG+CGG 0.340548 1_1:+56829618 Msa0030460:CDS
TGGAACTCCTCAAATATTCT+AGG 0.341058 1_1:-56826839 None:intergenic
CATTGTACCGCTTCATGAAA+TGG 0.342244 1_1:-56827168 None:intergenic
ATGAGTTTCTGAAGCTTTGT+TGG 0.343120 1_1:-56827218 None:intergenic
TTCACCAGATCTCTTTCTCT+TGG 0.356018 1_1:-56827494 None:intergenic
GTGGCGGCGGTGGCGATGGG+AGG 0.358436 1_1:+56829631 Msa0030460:CDS
GGAAATAAAAGCAGAGTTGA+TGG 0.361988 1_1:+56826468 Msa0030460:CDS
GATATTCTTCATATTCCTCT+TGG 0.370740 1_1:-56826859 None:intergenic
GCAGTGGCGGCGGTGGCGAT+GGG 0.386640 1_1:+56829628 Msa0030460:CDS
GAGAGGTGCGGTGGCGGCGG+CGG 0.390968 1_1:+56829606 Msa0030460:CDS
TGGAGGGAGAGGTGCGGTGG+CGG 0.392665 1_1:+56829600 Msa0030460:CDS
TATAGTAAAAGAATTGGATT+TGG 0.393932 1_1:+56826429 Msa0030460:CDS
TGCGTAAAAGATTTGAAAGA+AGG 0.394307 1_1:+56826890 Msa0030460:CDS
AGAAATTAGAACAGGATGTT+TGG 0.398022 1_1:+56826578 Msa0030460:CDS
AGGGAGAGGTGCGGTGGCGG+CGG 0.402744 1_1:+56829603 Msa0030460:CDS
TTACACTCCTAGAATATTTG+AGG 0.404149 1_1:+56826832 Msa0030460:CDS
GCTGGACTCTTCATAAACTT+TGG 0.408472 1_1:-56827260 None:intergenic
CCTGTTCTAATTTCTGCTCT+AGG 0.415588 1_1:-56826570 None:intergenic
GGCGGCGGCAGTGGCGGCGG+TGG 0.421669 1_1:+56829621 Msa0030460:CDS
AACAGGATGTTTGGCGCGTA+TGG 0.429347 1_1:+56826587 Msa0030460:CDS
AAATTTAGTACAGTCGTTAC+CGG 0.437312 1_1:+56827516 Msa0030460:CDS
ATTGTACCGCTTCATGAAAT+GGG 0.445421 1_1:-56827167 None:intergenic
GGGGAGAGTGCGCCAGTGGA+TGG 0.445875 1_1:+56829580 Msa0030460:CDS
GAGGTGGCTTCGATGATTAT+GGG 0.448721 1_1:-56825657 None:intergenic
AACAACAATGGCAGCGGCGC+AGG 0.452252 1_1:-56825816 None:intergenic
GGATGGTCGGAGACGGCGGC+GGG 0.454411 1_1:-56825794 None:intergenic
GACAAAAGACGTCAACCAAA+AGG 0.461065 1_1:+56826543 Msa0030460:CDS
GGGATGGTCGGAGACGGCGG+CGG 0.462743 1_1:-56825795 None:intergenic
TAGTGTTGGTAGCAGGATGA+TGG 0.465525 1_1:-56825766 None:intergenic
CCAACGGAGAGGATAGTTAT+GGG 0.468436 1_1:+56826941 Msa0030460:CDS
GGTTCGTTAGTGTTGGTAGC+AGG 0.468658 1_1:-56825773 None:intergenic
CCCATAACTATCCTCTCCGT+TGG 0.473881 1_1:-56826941 None:intergenic
TCCAACGGAGAGGATAGTTA+TGG 0.475548 1_1:+56826940 Msa0030460:CDS
ATGGACAAAGGTGCAACAAC+AGG 0.480107 1_1:-56824780 None:intergenic
GCTGCCATTGTTGTTGATCA+AGG 0.480338 1_1:+56825824 Msa0030460:CDS
TCTTTGTTCATGGAACGAAA+TGG 0.481622 1_1:-56824705 None:intergenic
GGTTGGGAAGTGATCAAGAT+TGG 0.482271 1_1:+56827113 Msa0030460:CDS
GCACCTCTCCCTCCATCCAC+TGG 0.485321 1_1:-56829592 None:intergenic
CAAAATAATTGATGATATGT+TGG 0.486221 1_1:+56827282 Msa0030460:CDS
TTGGTTAACTTAACCATTCG+AGG 0.487402 1_1:-56827199 None:intergenic
GCGCCAGTGGATGGAGGGAG+AGG 0.488813 1_1:+56829589 Msa0030460:CDS
AGTGTTGGTAGCAGGATGAT+GGG 0.490017 1_1:-56825765 None:intergenic
GGTGGCGGCGGCGGCAGTGG+CGG 0.493480 1_1:+56829615 Msa0030460:CDS
ACAAAAGACGTCAACCAAAA+GGG 0.496414 1_1:+56826544 Msa0030460:CDS
GATAGTTATGGGAAATGCTA+TGG 0.498511 1_1:+56826952 Msa0030460:CDS
TGCCAACAATGTACCTCACT+TGG 0.498928 1_1:+56826359 Msa0030460:CDS
TTCCAAGTGAGGTACATTGT+TGG 0.502644 1_1:-56826361 None:intergenic
AGGTGCAGCGGCGAGAGAGA+AGG 0.503028 1_1:-56825709 None:intergenic
AGAGGTGACGGCGGAGCCGA+TGG 0.506282 1_1:-56825686 None:intergenic
GACACCGTTGGTATGGCAAA+AGG 0.506522 1_1:+56827385 Msa0030460:CDS
CGAATCATATGAACATGCTC+AGG 0.508001 1_1:-56826684 None:intergenic
TGCTCCAAGAGAAAGAGATC+TGG 0.508313 1_1:+56827490 Msa0030460:CDS
CCTAGAGCAGAAATTAGAAC+AGG 0.510209 1_1:+56826570 Msa0030460:CDS
GGCAGCGGCGCAGGGATGGT+CGG 0.512257 1_1:-56825807 None:intergenic
TGGACAAGAAATGCAAGGTT+GGG 0.513978 1_1:+56827097 Msa0030460:CDS
ATGGACAAGAAATGCAAGGT+TGG 0.517510 1_1:+56827096 Msa0030460:CDS
CGAGAGAGAAGGAGAGGTGA+CGG 0.518457 1_1:-56825698 None:intergenic
GAGAGTGCGCCAGTGGATGG+AGG 0.519995 1_1:+56829583 Msa0030460:CDS
TGGCGGCGGTGGCGATGGGA+GGG 0.521534 1_1:+56829632 Msa0030460:CDS
GGAAATGAAGTTTGATTCTG+AGG 0.525153 1_1:+56826380 Msa0030460:CDS
CAATGGCAGCGGCGCAGGGA+TGG 0.526019 1_1:-56825811 None:intergenic
ATCGAGAAAGTTCACGCAAG+CGG 0.527366 1_1:+56827416 Msa0030460:CDS
GGGTTCGCTCATGACGTTGA+CGG 0.529975 1_1:-56825744 None:intergenic
AGAGTGCGCCAGTGGATGGA+GGG 0.530025 1_1:+56829584 Msa0030460:CDS
GGCGCAGGGATGGTCGGAGA+CGG 0.533543 1_1:-56825801 None:intergenic
GTGCTATCTGAGAAGGAAGA+AGG 0.533932 1_1:+56829663 Msa0030460:CDS
GGATGGAGGGAGAGGTGCGG+TGG 0.541907 1_1:+56829597 Msa0030460:CDS
GAGCCGATGGGAAGGAGAGG+TGG 0.542092 1_1:-56825673 None:intergenic
GAAGTTTGATTCTGAGGCAG+CGG 0.545649 1_1:+56826386 Msa0030460:CDS
TGGCGATGGGAGGGAGAGAG+AGG 0.545990 1_1:+56829641 Msa0030460:CDS
GCGACACAATCAAGTCAAGT+TGG 0.547894 1_1:+56827647 Msa0030460:CDS
CAATGTGGACACCGTTGGTA+TGG 0.550134 1_1:+56827378 Msa0030460:CDS
GAAGTGATCAAGATTGGAAA+GGG 0.552959 1_1:+56827119 Msa0030460:CDS
GAGAGAGGTGCTATCTGAGA+AGG 0.554300 1_1:+56829656 Msa0030460:CDS
TGACGGCGGAGCCGATGGGA+AGG 0.554360 1_1:-56825681 None:intergenic
GCAGGGATGGTCGGAGACGG+CGG 0.559162 1_1:-56825798 None:intergenic
GAGGTGACGGCGGAGCCGAT+GGG 0.566590 1_1:-56825685 None:intergenic
AGGTGGCTTCGATGATTATG+GGG 0.574034 1_1:-56825656 None:intergenic
ACAACAATGGCAGCGGCGCA+GGG 0.575609 1_1:-56825815 None:intergenic
GGCGGCGGGTTCGTTAGTGT+TGG 0.578521 1_1:-56825780 None:intergenic
CAAAATGTGCAACACGGACA+AGG 0.581561 1_1:+56826330 Msa0030460:CDS
GTGTTGGTAGCAGGATGATG+GGG 0.582430 1_1:-56825764 None:intergenic
ATATTCTTTGGTTATTCAGG+AGG 0.583347 1_1:+56824728 Msa0030460:CDS
GGAAGTGATCAAGATTGGAA+AGG 0.584639 1_1:+56827118 Msa0030460:CDS
GCGGAGCCGATGGGAAGGAG+AGG 0.584685 1_1:-56825676 None:intergenic
AGTGGATGGAGGGAGAGGTG+CGG 0.584829 1_1:+56829594 Msa0030460:CDS
GTATGGTTATTTCACTCGAT+CGG 0.586251 1_1:+56826604 Msa0030460:CDS
TTCTTTCTTAATCAGAAGGG+GGG 0.587337 1_1:+56829561 Msa0030460:intron
CAATGAGTTATGTCCTCGAA+TGG 0.589590 1_1:+56827186 Msa0030460:CDS
AAACCTATATACTTAAGCGA+TGG 0.590891 1_1:+56827077 Msa0030460:CDS
CAGCGGCGAGAGAGAAGGAG+AGG 0.595013 1_1:-56825704 None:intergenic
GAGAGAAGGAGAGGTGACGG+CGG 0.598157 1_1:-56825695 None:intergenic
AGGCAAAGAGAGAGGTGCAG+CGG 0.599075 1_1:-56825721 None:intergenic
CATGCTCAGGTTGAAGTTGG+TGG 0.600927 1_1:-56826671 None:intergenic
TCAAACTTCATTTCCAAGTG+AGG 0.602359 1_1:-56826372 None:intergenic
AAGGAGAGTTTGCAAGCGCG+TGG 0.605662 1_1:+56829682 Msa0030460:CDS
CAAAAGACGTCAACCAAAAG+GGG 0.607006 1_1:+56826545 Msa0030460:CDS
GAACATGCTCAGGTTGAAGT+TGG 0.607804 1_1:-56826674 None:intergenic
TAAAAGCCCATTTCATGAAG+CGG 0.608976 1_1:+56827161 Msa0030460:CDS
TGTCGTAAATTTGAGACACA+TGG 0.610330 1_1:+56826995 Msa0030460:CDS
CAATCAAGTCAAGTTGGCAA+TGG 0.617634 1_1:+56827653 Msa0030460:CDS
AAGATTCACATGCTACAAAG+AGG 0.619398 1_1:+56826506 Msa0030460:CDS
TTGATCAACAACAATGGCAG+CGG 0.627743 1_1:-56825822 None:intergenic
TTTCAGAGTAGAGAGCGCGT+AGG 0.628284 1_1:+56829711 Msa0030460:CDS
GTGATCAAGATTGGAAAGGG+AGG 0.630069 1_1:+56827122 Msa0030460:CDS
AGTATGTGGATGGAGAATCA+GGG 0.630721 1_1:+56827311 Msa0030460:CDS
CATGAACAAAATGTGCAACA+CGG 0.636597 1_1:+56826324 Msa0030460:CDS
TGCTACAAAGAGGGTGTACG+AGG 0.638548 1_1:+56826516 Msa0030460:CDS
AGCGATGGACAAGAAATGCA+AGG 0.640628 1_1:+56827092 Msa0030460:CDS
GTTGACGGAGGCAAAGAGAG+AGG 0.651480 1_1:-56825729 None:intergenic
GTATGTGGATGGAGAATCAG+GGG 0.652149 1_1:+56827312 Msa0030460:CDS
AGATTCACATGCTACAAAGA+GGG 0.654496 1_1:+56826507 Msa0030460:CDS
CACAAACTATGATAATCCAA+CGG 0.657053 1_1:+56826925 Msa0030460:CDS
AAGCCACCTCTCCTTCCCAT+CGG 0.662631 1_1:+56825670 Msa0030460:CDS
TTCGCTCATGACGTTGACGG+AGG 0.669621 1_1:-56825741 None:intergenic
ATTGACAATGTGGACACCGT+TGG 0.671830 1_1:+56827373 Msa0030460:CDS
ATTACCTTGATCAACAACAA+TGG 0.673823 1_1:-56825828 None:intergenic
GGTGGCTTCGATGATTATGG+GGG 0.689530 1_1:-56825655 None:intergenic
AATATTTGAGGAGTTCCAAG+AGG 0.693235 1_1:+56826844 Msa0030460:CDS
AAATGATGAAATTGACAATG+TGG 0.705740 1_1:+56827363 Msa0030460:CDS
ACTATGATAATCCAACGGAG+AGG 0.733483 1_1:+56826930 Msa0030460:CDS
TATGTGGATGGAGAATCAGG+GGG 0.769238 1_1:+56827313 Msa0030460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATTTTTTCATCTTTA+TGG + chr1_1:56824897-56824916 Msa0030460:intron 10.0%
!! TACTAAAATGAAAAAAAATA+TGG + chr1_1:56825227-56825246 Msa0030460:intron 10.0%
!! ATTACTATTAAAAAAACATT+GGG - chr1_1:56826034-56826053 None:intergenic 10.0%
!! TATTACTATTAAAAAAACAT+TGG - chr1_1:56826035-56826054 None:intergenic 10.0%
!! GAAAAGATAAATAAATAATA+TGG - chr1_1:56827596-56827615 None:intergenic 10.0%
!!! ATGTTATTAAAATTTTATGT+TGG - chr1_1:56828514-56828533 None:intergenic 10.0%
!!! AAATAATTTTTTTTATGGAA+TGG + chr1_1:56829537-56829556 Msa0030460:intron 10.0%
!! ATATTTAAATTTATGGACAA+AGG - chr1_1:56824795-56824814 None:intergenic 15.0%
!! AAAAAATATTTATGCATTGT+AGG - chr1_1:56824889-56824908 None:intergenic 15.0%
!!! TAGTAGTTATAATTTTATGA+AGG + chr1_1:56825105-56825124 Msa0030460:intron 15.0%
!!! AGTAGTTATAATTTTATGAA+GGG + chr1_1:56825106-56825125 Msa0030460:intron 15.0%
!!! AAAAACTATATACTTTTTGT+AGG + chr1_1:56825151-56825170 Msa0030460:intron 15.0%
!! ACAAAAAATAAGAATAGAAA+AGG - chr1_1:56825285-56825304 None:intergenic 15.0%
!! TAAAGAAGTAAATTTGAAAA+AGG - chr1_1:56825345-56825364 None:intergenic 15.0%
!!! TATACATATATATAGCTTTA+TGG + chr1_1:56825969-56825988 Msa0030460:intron 15.0%
!! TTACTATTAAAAAAACATTG+GGG - chr1_1:56826033-56826052 None:intergenic 15.0%
!! AAAACCAAAATTTACAATTA+AGG - chr1_1:56826270-56826289 None:intergenic 15.0%
!!! TTATTATGAATTCTTTTGTA+TGG + chr1_1:56828597-56828616 Msa0030460:intron 15.0%
!!! TATTATGAATTCTTTTGTAT+GGG + chr1_1:56828598-56828617 Msa0030460:intron 15.0%
!! TTGCGTGATATTTAAATTTA+TGG - chr1_1:56824802-56824821 None:intergenic 20.0%
!!! GTAGTTATAATTTTATGAAG+GGG + chr1_1:56825107-56825126 Msa0030460:intron 20.0%
!!! GGTATACACATTTTTTTATA+AGG + chr1_1:56825375-56825394 Msa0030460:intron 20.0%
!! GAAAAATCAATTCTTTAATG+AGG + chr1_1:56825563-56825582 Msa0030460:intron 20.0%
!!! TTGATGAAAAATTAGTTTCT+AGG + chr1_1:56825914-56825933 Msa0030460:intron 20.0%
!! TACTATTAAAAAAACATTGG+GGG - chr1_1:56826032-56826051 None:intergenic 20.0%
!!! AATAGTAATAGATAGCTTTA+TGG + chr1_1:56826045-56826064 Msa0030460:intron 20.0%
!! AATGAGTATAGTAAAAGAAT+TGG + chr1_1:56826423-56826442 Msa0030460:CDS 20.0%
!! TATAGTAAAAGAATTGGATT+TGG + chr1_1:56826429-56826448 Msa0030460:CDS 20.0%
!!! CAAAATAATTGATGATATGT+TGG + chr1_1:56827282-56827301 Msa0030460:CDS 20.0%
!! TAAATAATATGGTTTCTTAC+CGG - chr1_1:56827585-56827604 None:intergenic 20.0%
!! AATTTGTCATATAATGATTC+AGG - chr1_1:56827929-56827948 None:intergenic 20.0%
!! AATCATTATATGACAAATTG+CGG + chr1_1:56827930-56827949 Msa0030460:intron 20.0%
!! TTATGAACAAACATATTTCT+TGG - chr1_1:56828314-56828333 None:intergenic 20.0%
!! AAGAAATATGTTTGTTCATA+AGG + chr1_1:56828313-56828332 Msa0030460:intron 20.0%
!! AGAAATATGTTTGTTCATAA+GGG + chr1_1:56828314-56828333 Msa0030460:intron 20.0%
!! GAACATACATAATTAATCAT+AGG - chr1_1:56828404-56828423 None:intergenic 20.0%
!!! ATTTTAATCAATTTGAAGAC+AGG + chr1_1:56828429-56828448 Msa0030460:intron 20.0%
!!! TTAAAATTTTATGTTGGTCT+TGG - chr1_1:56828508-56828527 None:intergenic 20.0%
!! GAAATTAAGAACGTAAAATA+TGG + chr1_1:56828625-56828644 Msa0030460:intron 20.0%
!! AACAAATGAAGAATAAAAGA+TGG + chr1_1:56828832-56828851 Msa0030460:intron 20.0%
!!! CAAATATTTTGAAGAAAACT+TGG - chr1_1:56829034-56829053 None:intergenic 20.0%
!! TCAGTGTTAAAAAATTCATA+TGG + chr1_1:56829368-56829387 Msa0030460:intron 20.0%
!! GAATTGAGATTCATTATTAT+TGG + chr1_1:56829431-56829450 Msa0030460:intron 20.0%
! CAAAGAATATTCTTTGTTCA+TGG - chr1_1:56824718-56824737 None:intergenic 25.0%
! CATGAACAAAGAATATTCTT+TGG + chr1_1:56824716-56824735 Msa0030460:CDS 25.0%
! AGAATATTCTTTGGTTATTC+AGG + chr1_1:56824725-56824744 Msa0030460:CDS 25.0%
! TAACCTTTCAAAACAGTAAA+GGG - chr1_1:56824970-56824989 None:intergenic 25.0%
! GTACGTAATGAATGTAAAAT+TGG + chr1_1:56825435-56825454 Msa0030460:intron 25.0%
! CGTGGAAAAAATAAAATCAA+TGG + chr1_1:56825522-56825541 Msa0030460:intron 25.0%
! GGCAAATAATAAAATAGAGA+AGG - chr1_1:56825862-56825881 None:intergenic 25.0%
! AACATCATGTAATAAAGAGA+CGG - chr1_1:56825883-56825902 None:intergenic 25.0%
! TTCAGATTGTGTCAATAAAT+TGG + chr1_1:56826290-56826309 Msa0030460:intron 25.0%
!!! CATATCATCAATTATTTTGC+TGG - chr1_1:56827281-56827300 None:intergenic 25.0%
! TTCATCATTTGCAATTGATA+TGG - chr1_1:56827353-56827372 None:intergenic 25.0%
! AAATGATGAAATTGACAATG+TGG + chr1_1:56827363-56827382 Msa0030460:CDS 25.0%
! CATAGATAAAAACTACTTAC+CGG - chr1_1:56827538-56827557 None:intergenic 25.0%
!!! ACTTATAGGTGTTTTTGTAA+GGG + chr1_1:56827826-56827845 Msa0030460:intron 25.0%
!!! ATGATTCAGGTTTTGAATTA+AGG - chr1_1:56827916-56827935 None:intergenic 25.0%
! GAAATATGTTTGTTCATAAG+GGG + chr1_1:56828315-56828334 Msa0030460:intron 25.0%
! CATACATAATTAATCATAGG+TGG - chr1_1:56828401-56828420 None:intergenic 25.0%
! TATCAGTATAATCTTGATTC+AGG + chr1_1:56828679-56828698 Msa0030460:intron 25.0%
!! AATGTGATAACTTTTGTCAA+GGG - chr1_1:56828774-56828793 None:intergenic 25.0%
!! TAATGTGATAACTTTTGTCA+AGG - chr1_1:56828775-56828794 None:intergenic 25.0%
! TCACATTACAACCTATAATA+AGG + chr1_1:56828787-56828806 Msa0030460:intron 25.0%
!! CTTCATTTGTTTCTTATAGA+TGG - chr1_1:56828823-56828842 None:intergenic 25.0%
! AAATGAAGAATAAAAGATGG+AGG + chr1_1:56828835-56828854 Msa0030460:intron 25.0%
! AATGAAGAATAAAAGATGGA+GGG + chr1_1:56828836-56828855 Msa0030460:intron 25.0%
!!! TTTTGAAGAAAACTTGGTTA+AGG - chr1_1:56829028-56829047 None:intergenic 25.0%
! CTATTATTTGTGCTAACTAA+TGG - chr1_1:56829324-56829343 None:intergenic 25.0%
! CATTAGTTAGCACAAATAAT+AGG + chr1_1:56829322-56829341 Msa0030460:intron 25.0%
! ATTCATATGGATTCCATATT+AGG + chr1_1:56829381-56829400 Msa0030460:intron 25.0%
! TTCATATGGATTCCATATTA+GGG + chr1_1:56829382-56829401 Msa0030460:intron 25.0%
ATATTCTTTGGTTATTCAGG+AGG + chr1_1:56824728-56824747 Msa0030460:CDS 30.0%
!! TTTCCCTTTACTGTTTTGAA+AGG + chr1_1:56824964-56824983 Msa0030460:intron 30.0%
CTAACCTTTCAAAACAGTAA+AGG - chr1_1:56824971-56824990 None:intergenic 30.0%
TTACTTCTTTACTACGTAGT+TGG + chr1_1:56825354-56825373 Msa0030460:intron 30.0%
GTAAATTGAGCAAAGTGAAA+TGG - chr1_1:56825475-56825494 None:intergenic 30.0%
AATCAATGGCTGTGATTAAA+TGG + chr1_1:56825536-56825555 Msa0030460:intron 30.0%
ATTACCTTGATCAACAACAA+TGG - chr1_1:56825831-56825850 None:intergenic 30.0%
!! GTGGCCTTAATTGTAAATTT+TGG + chr1_1:56826263-56826282 Msa0030460:intron 30.0%
AGAAATTAGAACAGGATGTT+TGG + chr1_1:56826578-56826597 Msa0030460:CDS 30.0%
TTACACTCCTAGAATATTTG+AGG + chr1_1:56826832-56826851 Msa0030460:CDS 30.0%
GATATTCTTCATATTCCTCT+TGG - chr1_1:56826862-56826881 None:intergenic 30.0%
TGCGTAAAAGATTTGAAAGA+AGG + chr1_1:56826890-56826909 Msa0030460:CDS 30.0%
CACAAACTATGATAATCCAA+CGG + chr1_1:56826925-56826944 Msa0030460:CDS 30.0%
AAACCTATATACTTAAGCGA+TGG + chr1_1:56827077-56827096 Msa0030460:CDS 30.0%
GGAAAAAGCGATATAAATCT+TGG + chr1_1:56827437-56827456 Msa0030460:CDS 30.0%
AAATTTAGTACAGTCGTTAC+CGG + chr1_1:56827516-56827535 Msa0030460:CDS 30.0%
!! AATTTTAGTACAGTCGTTAC+CGG + chr1_1:56827563-56827582 Msa0030460:intron 30.0%
!! CACTTATAGGTGTTTTTGTA+AGG + chr1_1:56827825-56827844 Msa0030460:intron 30.0%
!! CAATTGCTTTTGTCAAATTG+CGG + chr1_1:56828006-56828025 Msa0030460:intron 30.0%
ATAATAGTGATGCCTATCAA+TGG + chr1_1:56828248-56828267 Msa0030460:intron 30.0%
! ATGAAAATTTCGAGTAGTGA+AGG + chr1_1:56828371-56828390 Msa0030460:intron 30.0%
!! ATGAAAAGCATTAAACTGAC+AGG + chr1_1:56828736-56828755 Msa0030460:intron 30.0%
! TTGTTTCTTATAGATGGTTC+TGG - chr1_1:56828817-56828836 None:intergenic 30.0%
! ATTTGTGCTAACTAATGGAT+GGG - chr1_1:56829319-56829338 None:intergenic 30.0%
TATTTGTGCTAACTAATGGA+TGG - chr1_1:56829320-56829339 None:intergenic 30.0%
TTAGCACAAATAATAGGAGA+TGG + chr1_1:56829328-56829347 Msa0030460:intron 30.0%
! TATGTAGTTTGTCCCTAATA+TGG - chr1_1:56829397-56829416 None:intergenic 30.0%
AACTACATAGTTGCCAAAAT+TGG + chr1_1:56829408-56829427 Msa0030460:intron 30.0%
ACTACATAGTTGCCAAAATT+GGG + chr1_1:56829409-56829428 Msa0030460:intron 30.0%
! TGAATCTCAATTCCCAATTT+TGG - chr1_1:56829424-56829443 None:intergenic 30.0%
! AATTGAGTTGCTTCATTTCA+TGG - chr1_1:56829511-56829530 None:intergenic 30.0%
TGGATTCTTTCTTAATCAGA+AGG + chr1_1:56829557-56829576 Msa0030460:intron 30.0%
GGATTCTTTCTTAATCAGAA+GGG + chr1_1:56829558-56829577 Msa0030460:intron 30.0%
GATTCTTTCTTAATCAGAAG+GGG + chr1_1:56829559-56829578 Msa0030460:intron 30.0%
ATTCTTTCTTAATCAGAAGG+GGG + chr1_1:56829560-56829579 Msa0030460:intron 30.0%
TCTTTGTTCATGGAACGAAA+TGG - chr1_1:56824708-56824727 None:intergenic 35.0%
ATTTACCCCATTTGAAGACA+TGG + chr1_1:56825489-56825508 Msa0030460:intron 35.0%
ACACATCCATGTCTTCAAAT+GGG - chr1_1:56825498-56825517 None:intergenic 35.0%
!! AAGTTTTCTGAGAAAGGAAG+AGG - chr1_1:56825624-56825643 None:intergenic 35.0%
! ATGCAGTCTAAGTTTTCTAG+TGG + chr1_1:56826081-56826100 Msa0030460:intron 35.0%
!! AAAACAACATTCTGAAGTCG+CGG - chr1_1:56826189-56826208 None:intergenic 35.0%
! ATGTCTGAAATCGTCACTTA+TGG + chr1_1:56826241-56826260 Msa0030460:intron 35.0%
CATGAACAAAATGTGCAACA+CGG + chr1_1:56826324-56826343 Msa0030460:CDS 35.0%
TCAAACTTCATTTCCAAGTG+AGG - chr1_1:56826375-56826394 None:intergenic 35.0%
GGAAATGAAGTTTGATTCTG+AGG + chr1_1:56826380-56826399 Msa0030460:CDS 35.0%
TTTGGTATTCGTCGAGAATA+TGG + chr1_1:56826447-56826466 Msa0030460:CDS 35.0%
GGAAATAAAAGCAGAGTTGA+TGG + chr1_1:56826468-56826487 Msa0030460:CDS 35.0%
AAGATTCACATGCTACAAAG+AGG + chr1_1:56826506-56826525 Msa0030460:CDS 35.0%
AGATTCACATGCTACAAAGA+GGG + chr1_1:56826507-56826526 Msa0030460:CDS 35.0%
ACAAAAGACGTCAACCAAAA+GGG + chr1_1:56826544-56826563 Msa0030460:CDS 35.0%
! GTATGGTTATTTCACTCGAT+CGG + chr1_1:56826604-56826623 Msa0030460:CDS 35.0%
GCCTAGATTGAAAATGAAGA+AGG + chr1_1:56826781-56826800 Msa0030460:intron 35.0%
! GCCTTCTTCATTTTCAATCT+AGG - chr1_1:56826785-56826804 None:intergenic 35.0%
TGGAACTCCTCAAATATTCT+AGG - chr1_1:56826842-56826861 None:intergenic 35.0%
AATATTTGAGGAGTTCCAAG+AGG + chr1_1:56826844-56826863 Msa0030460:CDS 35.0%
GATAGTTATGGGAAATGCTA+TGG + chr1_1:56826952-56826971 Msa0030460:CDS 35.0%
! TGTCGTAAATTTGAGACACA+TGG + chr1_1:56826995-56827014 Msa0030460:CDS 35.0%
CGCTTAAGTATATAGGTTTC+AGG - chr1_1:56827076-56827095 None:intergenic 35.0%
TGTCCATCGCTTAAGTATAT+AGG - chr1_1:56827083-56827102 None:intergenic 35.0%
GAAGTGATCAAGATTGGAAA+GGG + chr1_1:56827119-56827138 Msa0030460:CDS 35.0%
TAAAAGCCCATTTCATGAAG+CGG + chr1_1:56827161-56827180 Msa0030460:CDS 35.0%
ATTGTACCGCTTCATGAAAT+GGG - chr1_1:56827170-56827189 None:intergenic 35.0%
TTGGTTAACTTAACCATTCG+AGG - chr1_1:56827202-56827221 None:intergenic 35.0%
!! ATGAGTTTCTGAAGCTTTGT+TGG - chr1_1:56827221-56827240 None:intergenic 35.0%
! TATGTTGGCCAAAAAGTATG+TGG + chr1_1:56827297-56827316 Msa0030460:CDS 35.0%
! TTCTCCATCCACATACTTTT+TGG - chr1_1:56827308-56827327 None:intergenic 35.0%
!! CTTGACTTGGTTATTACTCT+TGG - chr1_1:56827700-56827719 None:intergenic 35.0%
CACATACATTCACATTCGAT+TGG + chr1_1:56827724-56827743 Msa0030460:intron 35.0%
!!! TGTTGAACTGTTTTTGTTCC+TGG + chr1_1:56827748-56827767 Msa0030460:intron 35.0%
!! TGTTCCTGGTTTTTATTTGC+TGG + chr1_1:56827762-56827781 Msa0030460:intron 35.0%
!! GTTCCTGGTTTTTATTTGCT+GGG + chr1_1:56827763-56827782 Msa0030460:intron 35.0%
AAAGGTAACGACATAGTAGA+AGG - chr1_1:56827800-56827819 None:intergenic 35.0%
TTACCTTTGTGGACACTTAT+AGG + chr1_1:56827812-56827831 Msa0030460:intron 35.0%
!!! CAGGTTTTGAATTAAGGTCT+TGG - chr1_1:56827910-56827929 None:intergenic 35.0%
! GCTGCTAGTATTTTCAATTG+CGG + chr1_1:56828129-56828148 Msa0030460:intron 35.0%
ATTAGTAACGTCGTCGTAAT+TGG - chr1_1:56828177-56828196 None:intergenic 35.0%
ATGCCTATCAATGGAAAGAA+AGG + chr1_1:56828257-56828276 Msa0030460:intron 35.0%
TGCCTATCAATGGAAAGAAA+GGG + chr1_1:56828258-56828277 Msa0030460:intron 35.0%
TTCCCTTTCTTTCCATTGAT+AGG - chr1_1:56828263-56828282 None:intergenic 35.0%
TCAACCATAACCACCATAAA+GGG + chr1_1:56828549-56828568 Msa0030460:intron 35.0%
AAGCATTAAACTGACAGGAT+TGG + chr1_1:56828741-56828760 Msa0030460:intron 35.0%
AGCATTAAACTGACAGGATT+GGG + chr1_1:56828742-56828761 Msa0030460:intron 35.0%
! ATAACTTTTGTCAAGGGTTC+AGG - chr1_1:56828768-56828787 None:intergenic 35.0%
!! GTTCTGGTTTGCCTTATTAT+AGG - chr1_1:56828801-56828820 None:intergenic 35.0%
ATCCACATTCTCATCACAAT+GGG - chr1_1:56828869-56828888 None:intergenic 35.0%
TATCCACATTCTCATCACAA+TGG - chr1_1:56828870-56828889 None:intergenic 35.0%
! ATGGGAAAGAACATGTGTTT+TGG + chr1_1:56828912-56828931 Msa0030460:intron 35.0%
AACAGGACAATAGTAAGGAA+GGG - chr1_1:56828951-56828970 None:intergenic 35.0%
AAACAGGACAATAGTAAGGA+AGG - chr1_1:56828952-56828971 None:intergenic 35.0%
ACAGAAACAGGACAATAGTA+AGG - chr1_1:56828956-56828975 None:intergenic 35.0%
!!! TCAGGTTCTGAAGAAGTTTT+GGG - chr1_1:56829121-56829140 None:intergenic 35.0%
!!! TTCAGGTTCTGAAGAAGTTT+TGG - chr1_1:56829122-56829141 None:intergenic 35.0%
!! ATGCTAAGTCAAAAGTGTTC+AGG - chr1_1:56829139-56829158 None:intergenic 35.0%
AGCATGCTGAGATTGAAATT+TGG + chr1_1:56829154-56829173 Msa0030460:intron 35.0%
TGCATATTGTTCTCACTGTA+AGG - chr1_1:56829255-56829274 None:intergenic 35.0%
TTCTTTCTTAATCAGAAGGG+GGG + chr1_1:56829561-56829580 Msa0030460:intron 35.0%
TTTGTTGCAGCAGAAGTTGA+TGG + chr1_1:56825300-56825319 Msa0030460:intron 40.0%
CACATCCATGTCTTCAAATG+GGG - chr1_1:56825497-56825516 None:intergenic 40.0%
CACACATCCATGTCTTCAAA+TGG - chr1_1:56825499-56825518 None:intergenic 40.0%
ATGGCTGTGATTAAATGGCT+TGG + chr1_1:56825541-56825560 Msa0030460:intron 40.0%
!! GGTGGAAAGTTTTCTGAGAA+AGG - chr1_1:56825630-56825649 None:intergenic 40.0%
TTGATCAACAACAATGGCAG+CGG - chr1_1:56825825-56825844 None:intergenic 40.0%
! TCTGAAATCGTCACTTATGG+TGG + chr1_1:56826244-56826263 Msa0030460:intron 40.0%
TTCCAAGTGAGGTACATTGT+TGG - chr1_1:56826364-56826383 None:intergenic 40.0%
GACAAAAGACGTCAACCAAA+AGG + chr1_1:56826543-56826562 Msa0030460:CDS 40.0%
CAAAAGACGTCAACCAAAAG+GGG + chr1_1:56826545-56826564 Msa0030460:CDS 40.0%
CCTGTTCTAATTTCTGCTCT+AGG - chr1_1:56826573-56826592 None:intergenic 40.0%
CCTAGAGCAGAAATTAGAAC+AGG + chr1_1:56826570-56826589 Msa0030460:CDS 40.0%
CGAATCATATGAACATGCTC+AGG - chr1_1:56826687-56826706 None:intergenic 40.0%
ACTATGATAATCCAACGGAG+AGG + chr1_1:56826930-56826949 Msa0030460:CDS 40.0%
ATGGACAAGAAATGCAAGGT+TGG + chr1_1:56827096-56827115 Msa0030460:CDS 40.0%
TGGACAAGAAATGCAAGGTT+GGG + chr1_1:56827097-56827116 Msa0030460:CDS 40.0%
GGAAGTGATCAAGATTGGAA+AGG + chr1_1:56827118-56827137 Msa0030460:CDS 40.0%
CATTGTACCGCTTCATGAAA+TGG - chr1_1:56827171-56827190 None:intergenic 40.0%
CAATGAGTTATGTCCTCGAA+TGG + chr1_1:56827186-56827205 Msa0030460:CDS 40.0%
GCTGGACTCTTCATAAACTT+TGG - chr1_1:56827263-56827282 None:intergenic 40.0%
! TTGGCCAAAAAGTATGTGGA+TGG + chr1_1:56827301-56827320 Msa0030460:CDS 40.0%
AAGTATGTGGATGGAGAATC+AGG + chr1_1:56827310-56827329 Msa0030460:CDS 40.0%
AGTATGTGGATGGAGAATCA+GGG + chr1_1:56827311-56827330 Msa0030460:CDS 40.0%
! TATGCCTTTTGCCATACCAA+CGG - chr1_1:56827392-56827411 None:intergenic 40.0%
TTCACCAGATCTCTTTCTCT+TGG - chr1_1:56827497-56827516 None:intergenic 40.0%
!! CAATCAAGTCAAGTTGGCAA+TGG + chr1_1:56827653-56827672 Msa0030460:CDS 40.0%
ATGTATGTGTCAGCTTGACT+TGG - chr1_1:56827713-56827732 None:intergenic 40.0%
CTACTATGTCGTTACCTTTG+TGG + chr1_1:56827801-56827820 Msa0030460:intron 40.0%
ACACCTATAAGTGTCCACAA+AGG - chr1_1:56827818-56827837 None:intergenic 40.0%
TCAATTTGAAGACAGGACAG+AGG + chr1_1:56828436-56828455 Msa0030460:intron 40.0%
CAATTTGAAGACAGGACAGA+GGG + chr1_1:56828437-56828456 Msa0030460:intron 40.0%
TATGGTGGTTATGGTTGACA+AGG - chr1_1:56828547-56828566 None:intergenic 40.0%
GTCAACCATAACCACCATAA+AGG + chr1_1:56828548-56828567 Msa0030460:intron 40.0%
CAACCATAACCACCATAAAG+GGG + chr1_1:56828550-56828569 Msa0030460:intron 40.0%
TGATTCAGTTTGCCCCTTTA+TGG - chr1_1:56828565-56828584 None:intergenic 40.0%
TCCACATTCTCATCACAATG+GGG - chr1_1:56828868-56828887 None:intergenic 40.0%
ATCAGTCTCATGTAGAGCTA+TGG + chr1_1:56828893-56828912 Msa0030460:intron 40.0%
TCAGTCTCATGTAGAGCTAT+GGG + chr1_1:56828894-56828913 Msa0030460:intron 40.0%
!! CTATTGTCCTGTTTCTGTCT+AGG + chr1_1:56828958-56828977 Msa0030460:intron 40.0%
AAAGAGTCCTAGACAGAAAC+AGG - chr1_1:56828968-56828987 None:intergenic 40.0%
!!! AGGTTCTGAAGAAGTTTTGG+GGG - chr1_1:56829119-56829138 None:intergenic 40.0%
!!! CAGGTTCTGAAGAAGTTTTG+GGG - chr1_1:56829120-56829139 None:intergenic 40.0%
! ATGGACAAAGGTGCAACAAC+AGG - chr1_1:56824783-56824802 None:intergenic 45.0%
ACCTTTCTACGTGTGCTCAA+TGG + chr1_1:56825043-56825062 Msa0030460:intron 45.0%
TCCATTGAGCACACGTAGAA+AGG - chr1_1:56825047-56825066 None:intergenic 45.0%
AGGTGGCTTCGATGATTATG+GGG - chr1_1:56825659-56825678 None:intergenic 45.0%
GAGGTGGCTTCGATGATTAT+GGG - chr1_1:56825660-56825679 None:intergenic 45.0%
AGAGGTGGCTTCGATGATTA+TGG - chr1_1:56825661-56825680 None:intergenic 45.0%
!! AGTGTTGGTAGCAGGATGAT+GGG - chr1_1:56825768-56825787 None:intergenic 45.0%
!! TAGTGTTGGTAGCAGGATGA+TGG - chr1_1:56825769-56825788 None:intergenic 45.0%
! GCTGCCATTGTTGTTGATCA+AGG + chr1_1:56825824-56825843 Msa0030460:CDS 45.0%
CAAAATGTGCAACACGGACA+AGG + chr1_1:56826330-56826349 Msa0030460:CDS 45.0%
TGCCAACAATGTACCTCACT+TGG + chr1_1:56826359-56826378 Msa0030460:CDS 45.0%
!! GAAGTTTGATTCTGAGGCAG+CGG + chr1_1:56826386-56826405 Msa0030460:CDS 45.0%
!! GAACATGCTCAGGTTGAAGT+TGG - chr1_1:56826677-56826696 None:intergenic 45.0%
TCCAACGGAGAGGATAGTTA+TGG + chr1_1:56826940-56826959 Msa0030460:CDS 45.0%
CCAACGGAGAGGATAGTTAT+GGG + chr1_1:56826941-56826960 Msa0030460:CDS 45.0%
AGCGATGGACAAGAAATGCA+AGG + chr1_1:56827092-56827111 Msa0030460:CDS 45.0%
GGTTGGGAAGTGATCAAGAT+TGG + chr1_1:56827113-56827132 Msa0030460:CDS 45.0%
GTGATCAAGATTGGAAAGGG+AGG + chr1_1:56827122-56827141 Msa0030460:CDS 45.0%
GTATGTGGATGGAGAATCAG+GGG + chr1_1:56827312-56827331 Msa0030460:CDS 45.0%
TATGTGGATGGAGAATCAGG+GGG + chr1_1:56827313-56827332 Msa0030460:CDS 45.0%
ATTGACAATGTGGACACCGT+TGG + chr1_1:56827373-56827392 Msa0030460:CDS 45.0%
ATCGAGAAAGTTCACGCAAG+CGG + chr1_1:56827416-56827435 Msa0030460:CDS 45.0%
TGCTCCAAGAGAAAGAGATC+TGG + chr1_1:56827490-56827509 Msa0030460:CDS 45.0%
GCGACACAATCAAGTCAAGT+TGG + chr1_1:56827647-56827666 Msa0030460:CDS 45.0%
CAGCCCAGCAAATAAAAACC+AGG - chr1_1:56827769-56827788 None:intergenic 45.0%
!! GGGTGCTGATTTAAGAGTCA+TGG + chr1_1:56827846-56827865 Msa0030460:intron 45.0%
GCTGTTAGCAACATGTTGCA+AGG - chr1_1:56827872-56827891 None:intergenic 45.0%
!! ACATTCTGAAGTCGCAGCAT+TGG - chr1_1:56828208-56828227 None:intergenic 45.0%
!! TGTTGGTCTTGGTTTGTAGC+TGG - chr1_1:56828497-56828516 None:intergenic 45.0%
TTGCCCCTTTATGGTGGTTA+TGG - chr1_1:56828556-56828575 None:intergenic 45.0%
TTCAGTTTGCCCCTTTATGG+TGG - chr1_1:56828562-56828581 None:intergenic 45.0%
ACAATTGCACTTCCTTGAGC+TGG + chr1_1:56828648-56828667 Msa0030460:intron 45.0%
GATACAACAACACCAGCTCA+AGG - chr1_1:56828663-56828682 None:intergenic 45.0%
CCACATTCTCATCACAATGG+GGG - chr1_1:56828867-56828886 None:intergenic 45.0%
!! CTTTTGCTGCTTGCTAGCTT+TGG + chr1_1:56828993-56829012 Msa0030460:intron 45.0%
CTTCCATCTGTGTTGTCAGT+GGG + chr1_1:56829057-56829076 Msa0030460:intron 45.0%
TTTCCCACTGACAACACAGA+TGG - chr1_1:56829063-56829082 None:intergenic 45.0%
!!! GGTTCTGAAGAAGTTTTGGG+GGG - chr1_1:56829118-56829137 None:intergenic 45.0%
! TGTTCTCACTGTAAGGTGCT+AGG - chr1_1:56829248-56829267 None:intergenic 45.0%
AGCCAGCGTTAATCCAATGA+AGG + chr1_1:56829458-56829477 Msa0030460:intron 45.0%
GACCTTCATTGGATTAACGC+TGG - chr1_1:56829463-56829482 None:intergenic 45.0%
CTCTGCAAAGTGACCTTCAT+TGG - chr1_1:56829474-56829493 None:intergenic 45.0%
GTGCTATCTGAGAAGGAAGA+AGG + chr1_1:56829663-56829682 Msa0030460:CDS 45.0%
!! GAAAAAAATATAATAAATAA+TGG - chr1_1:56825409-56825428 None:intergenic 5.0%
!!! TTCTTAAATAATTTTTTTTA+TGG + chr1_1:56829532-56829551 Msa0030460:intron 5.0%
!! GTTGCAGCAGAAGTTGATGG+AGG + chr1_1:56825303-56825322 Msa0030460:intron 50.0%
AGACATGGATGTGTGACACG+TGG + chr1_1:56825504-56825523 Msa0030460:intron 50.0%
ATGATTATGGGGGAGGAAGG+TGG - chr1_1:56825648-56825667 None:intergenic 50.0%
TCGATGATTATGGGGGAGGA+AGG - chr1_1:56825651-56825670 None:intergenic 50.0%
GGTGGCTTCGATGATTATGG+GGG - chr1_1:56825658-56825677 None:intergenic 50.0%
!! GTGTTGGTAGCAGGATGATG+GGG - chr1_1:56825767-56825786 None:intergenic 50.0%
!! GGTTCGTTAGTGTTGGTAGC+AGG - chr1_1:56825776-56825795 None:intergenic 50.0%
! TGCTACAAAGAGGGTGTACG+AGG + chr1_1:56826516-56826535 Msa0030460:CDS 50.0%
AACAGGATGTTTGGCGCGTA+TGG + chr1_1:56826587-56826606 Msa0030460:CDS 50.0%
!! CATGCTCAGGTTGAAGTTGG+TGG - chr1_1:56826674-56826693 None:intergenic 50.0%
CCCATAACTATCCTCTCCGT+TGG - chr1_1:56826944-56826963 None:intergenic 50.0%
CAATGTGGACACCGTTGGTA+TGG + chr1_1:56827378-56827397 Msa0030460:CDS 50.0%
GACACCGTTGGTATGGCAAA+AGG + chr1_1:56827385-56827404 Msa0030460:CDS 50.0%
! CAGCTGCGTTTGTCAAGTTG+CGG + chr1_1:56828080-56828099 Msa0030460:intron 50.0%
CCCCCATTGTGATGAGAATG+TGG + chr1_1:56828864-56828883 Msa0030460:intron 50.0%
!! TTGCTGCTTGCTAGCTTTGG+AGG + chr1_1:56828996-56829015 Msa0030460:intron 50.0%
GCTTCCATCTGTGTTGTCAG+TGG + chr1_1:56829056-56829075 Msa0030460:intron 50.0%
!!! GAAGTTTTGGGGGGATGAAG+TGG - chr1_1:56829109-56829128 None:intergenic 50.0%
!! GAGAGAGGTGCTATCTGAGA+AGG + chr1_1:56829656-56829675 Msa0030460:CDS 50.0%
GGCTTCGATGATTATGGGGG+AGG - chr1_1:56825655-56825674 None:intergenic 55.0%
AAGCCACCTCTCCTTCCCAT+CGG + chr1_1:56825670-56825689 Msa0030460:CDS 55.0%
CGAGAGAGAAGGAGAGGTGA+CGG - chr1_1:56825701-56825720 None:intergenic 55.0%
! AGGCAAAGAGAGAGGTGCAG+CGG - chr1_1:56825724-56825743 None:intergenic 55.0%
GTTGACGGAGGCAAAGAGAG+AGG - chr1_1:56825732-56825751 None:intergenic 55.0%
TTCGCTCATGACGTTGACGG+AGG - chr1_1:56825744-56825763 None:intergenic 55.0%
GGGTTCGCTCATGACGTTGA+CGG - chr1_1:56825747-56825766 None:intergenic 55.0%
!! TCTGCTCTAGGCTCCCCTTT+TGG - chr1_1:56826561-56826580 None:intergenic 55.0%
!! CTTGCTAGCTTTGGAGGAGC+AGG + chr1_1:56829002-56829021 Msa0030460:intron 55.0%
TTGGGGGGATGAAGTGGATG+AGG - chr1_1:56829103-56829122 None:intergenic 55.0%
AAGGAGAGTTTGCAAGCGCG+TGG + chr1_1:56829682-56829701 Msa0030460:CDS 55.0%
! GAGAGAAGGAGAGGTGACGG+CGG - chr1_1:56825698-56825717 None:intergenic 60.0%
ACAACAATGGCAGCGGCGCA+GGG - chr1_1:56825818-56825837 None:intergenic 60.0%
AACAACAATGGCAGCGGCGC+AGG - chr1_1:56825819-56825838 None:intergenic 60.0%
GGATGGAGAATCAGGGGGCA+TGG + chr1_1:56827318-56827337 Msa0030460:CDS 60.0%
AGAGTGCGCCAGTGGATGGA+GGG + chr1_1:56829584-56829603 Msa0030460:CDS 60.0%
AGTGGATGGAGGGAGAGGTG+CGG + chr1_1:56829594-56829613 Msa0030460:CDS 60.0%
GAGCCGATGGGAAGGAGAGG+TGG - chr1_1:56825676-56825695 None:intergenic 65.0%
CAGCGGCGAGAGAGAAGGAG+AGG - chr1_1:56825707-56825726 None:intergenic 65.0%
AGGTGCAGCGGCGAGAGAGA+AGG - chr1_1:56825712-56825731 None:intergenic 65.0%
! GGCGGCGGGTTCGTTAGTGT+TGG - chr1_1:56825783-56825802 None:intergenic 65.0%
! GAGAGTGCGCCAGTGGATGG+AGG + chr1_1:56829583-56829602 Msa0030460:CDS 65.0%
GCACCTCTCCCTCCATCCAC+TGG - chr1_1:56829595-56829614 None:intergenic 65.0%
TGGCGATGGGAGGGAGAGAG+AGG + chr1_1:56829641-56829660 Msa0030460:CDS 65.0%
GCGGAGCCGATGGGAAGGAG+AGG - chr1_1:56825679-56825698 None:intergenic 70.0%
TGACGGCGGAGCCGATGGGA+AGG - chr1_1:56825684-56825703 None:intergenic 70.0%
! GAGGTGACGGCGGAGCCGAT+GGG - chr1_1:56825688-56825707 None:intergenic 70.0%
! AGAGGTGACGGCGGAGCCGA+TGG - chr1_1:56825689-56825708 None:intergenic 70.0%
GCAGGGATGGTCGGAGACGG+CGG - chr1_1:56825801-56825820 None:intergenic 70.0%
GGCGCAGGGATGGTCGGAGA+CGG - chr1_1:56825804-56825823 None:intergenic 70.0%
CAATGGCAGCGGCGCAGGGA+TGG - chr1_1:56825814-56825833 None:intergenic 70.0%
! AAGGGGGGAGAGTGCGCCAG+TGG + chr1_1:56829576-56829595 Msa0030460:CDS 70.0%
! GGGGAGAGTGCGCCAGTGGA+TGG + chr1_1:56829580-56829599 Msa0030460:CDS 70.0%
GCGCCAGTGGATGGAGGGAG+AGG + chr1_1:56829589-56829608 Msa0030460:CDS 70.0%
! GGATGGAGGGAGAGGTGCGG+TGG + chr1_1:56829597-56829616 Msa0030460:CDS 70.0%
! TGGAGGGAGAGGTGCGGTGG+CGG + chr1_1:56829600-56829619 Msa0030460:CDS 70.0%
GGATGGTCGGAGACGGCGGC+GGG - chr1_1:56825797-56825816 None:intergenic 75.0%
GGGATGGTCGGAGACGGCGG+CGG - chr1_1:56825798-56825817 None:intergenic 75.0%
GGCAGCGGCGCAGGGATGGT+CGG - chr1_1:56825810-56825829 None:intergenic 75.0%
! AGGGAGAGGTGCGGTGGCGG+CGG + chr1_1:56829603-56829622 Msa0030460:CDS 75.0%
GCAGTGGCGGCGGTGGCGAT+GGG + chr1_1:56829628-56829647 Msa0030460:CDS 75.0%
TGGCGGCGGTGGCGATGGGA+GGG + chr1_1:56829632-56829651 Msa0030460:CDS 75.0%
!! GAGAGGTGCGGTGGCGGCGG+CGG + chr1_1:56829606-56829625 Msa0030460:CDS 80.0%
! GGCAGTGGCGGCGGTGGCGA+TGG + chr1_1:56829627-56829646 Msa0030460:CDS 80.0%
! GTGGCGGCGGTGGCGATGGG+AGG + chr1_1:56829631-56829650 Msa0030460:CDS 80.0%
!! TGCGGTGGCGGCGGCGGCAG+TGG + chr1_1:56829612-56829631 Msa0030460:CDS 85.0%
!! GGTGGCGGCGGCGGCAGTGG+CGG + chr1_1:56829615-56829634 Msa0030460:CDS 85.0%
! GGCGGCGGCGGCAGTGGCGG+CGG + chr1_1:56829618-56829637 Msa0030460:CDS 90.0%
! GGCGGCGGCAGTGGCGGCGG+TGG + chr1_1:56829621-56829640 Msa0030460:CDS 90.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 56824699 56829732 56824699 ID=Msa0030460;Name=Msa0030460
chr1_1 mRNA 56824699 56829732 56824699 ID=Msa0030460-mRNA-1;Parent=Msa0030460;Name=Msa0030460-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.66|1|1|6|0|557
chr1_1 exon 56824699 56824796 56824699 ID=Msa0030460-mRNA-1:exon:17036;Parent=Msa0030460-mRNA-1
chr1_1 exon 56825637 56825845 56825637 ID=Msa0030460-mRNA-1:exon:17037;Parent=Msa0030460-mRNA-1
chr1_1 exon 56826295 56826692 56826295 ID=Msa0030460-mRNA-1:exon:17038;Parent=Msa0030460-mRNA-1
chr1_1 exon 56826800 56827537 56826800 ID=Msa0030460-mRNA-1:exon:17039;Parent=Msa0030460-mRNA-1
chr1_1 exon 56827629 56827702 56827629 ID=Msa0030460-mRNA-1:exon:17040;Parent=Msa0030460-mRNA-1
chr1_1 exon 56829576 56829732 56829576 ID=Msa0030460-mRNA-1:exon:17041;Parent=Msa0030460-mRNA-1
chr1_1 CDS 56824699 56824796 56824699 ID=Msa0030460-mRNA-1:cds;Parent=Msa0030460-mRNA-1
chr1_1 CDS 56825637 56825845 56825637 ID=Msa0030460-mRNA-1:cds;Parent=Msa0030460-mRNA-1
chr1_1 CDS 56826295 56826692 56826295 ID=Msa0030460-mRNA-1:cds;Parent=Msa0030460-mRNA-1
chr1_1 CDS 56826800 56827537 56826800 ID=Msa0030460-mRNA-1:cds;Parent=Msa0030460-mRNA-1
chr1_1 CDS 56827629 56827702 56827629 ID=Msa0030460-mRNA-1:cds;Parent=Msa0030460-mRNA-1
chr1_1 CDS 56829576 56829732 56829576 ID=Msa0030460-mRNA-1:cds;Parent=Msa0030460-mRNA-1
Gene Sequence

>Msa0030460

ATGGATCCATTTCGTTCCATGAACAAAGAATATTCTTTGGTTATTCAGGAGGAGTGTAATAATAATAGTTCTATTCATGTTCCTGTTGTTGCACCTTTAAAACTTTCCACCTTCCTCCCCCATAATCATCGAAGCCACCTCTCCTTCCCATCGGCTCCGCCGTCACCTCTCCTTCTCTCTCGCCGCTGCACCTCTCTCTTTGCCTCCGTCAACGTCATGAGCGAACCCCATCATCCTGCTACCAACACTAACGAACCCGCCGCCGTCTCCGACCATCCCTGCGCCGCTGCCATTGTTGTTGATCAAGATTGTGTCAATAAATTGGTTAACAATATTCATGAACAAAATGTGCAACACGGACAAGGAAGTATTGCCAACAATGTACCTCACTTGGAAATGAAGTTTGATTCTGAGGCAGCGGCTTATGACTTTTATAATGAGTATAGTAAAAGAATTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAGTTGATGGAGTTTTGACTTCAAGAAGATTCACATGCTACAAAGAGGGTGTACGAGGTGTTGACAAAAGACGTCAACCAAAAGGGGAGCCTAGAGCAGAAATTAGAACAGGATGTTTGGCGCGTATGGTTATTTCACTCGATCGGAAGATAGAGAAATATAAAGTTGTTGACTTTATAGCTGAACATAACCACCAACTTCAACCTGAGCATAAGGCTCGTATGCTCATACAAGCTGCAAATGTTTACACTCCTAGAATATTTGAGGAGTTCCAAGAGGAATATGAAGAATATCAAGACACTTGCGTAAAAGATTTGAAAGAAGGTTTGTATACTGTCACAAACTATGATAATCCAACGGAGAGGATAGTTATGGGAAATGCTATGGAACAAAAAGTTTCATGTGATTGTCGTAAATTTGAGACACATGGCATCTTATGCAGTCATGCTTTGAAAGTTTTAGATGTCATGAACATTAAGTTAATTCCTGAAACCTATATACTTAAGCGATGGACAAGAAATGCAAGGTTGGGAAGTGATCAAGATTGGAAAGGGAGGCATGTTGAATTAGACATAAAAGCCCATTTCATGAAGCGGTACAATGAGTTATGTCCTCGAATGGTTAAGTTAACCAACAAAGCTTCAGAAACTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAGCAAAATAATTGATGATATGTTGGCCAAAAAGTATGTGGATGGAGAATCAGGGGGCATGGTTCATGTATCCATATCAATTGCAAATGATGAAATTGACAATGTGGACACCGTTGGTATGGCAAAAGGCATAGCTAATCGAGAAAGTTCACGCAAGCGGAAAAAGCGATATAAATCTTGGATTGAGAAAAAAGATAAAAAGACAAAGATGTGCTCCAAGAGAAAGAGATCTGGTGAAAATTTAGTACAGTCGTTACCGCAAGAAACTACAGTTCAAGCGACACAATCAAGTCAAGTTGGCAATGGAACTCAACATCAAGCTACAATCCAAGAAAGGGGGGAGAGTGCGCCAGTGGATGGAGGGAGAGGTGCGGTGGCGGCGGCGGCAGTGGCGGCGGTGGCGATGGGAGGGAGAGAGAGGTGCTATCTGAGAAGGAAGAAGGAGAGTTTGCAAGCGCGTGGAATTTGTTTCAGAGTAGAGAGCGCGTAG
Protein sequence

>Msa0030460

MDPFRSMNKEYSLVIQEECNNNSSIHVPVVAPLKLSTFLPHNHRSHLSFPSAPPSPLLLSRRCTSLFASVNVMSEPHHPATNTNEPAAVSDHPCAAAIVVDQDCVNKLVNNIHEQNVQHGQGSIANNVPHLEMKFDSEAAAYDFYNEYSKRIGFGIRREYGNKSRVDGVLTSRRFTCYKEGVRGVDKRRQPKGEPRAEIRTGCLARMVISLDRKIEKYKVVDFIAEHNHQLQPEHKARMLIQAANVYTPRIFEEFQEEYEEYQDTCVKDLKEGLYTVTNYDNPTERIVMGNAMEQKVSCDCRKFETHGILCSHALKVLDVMNIKLIPETYILKRWTRNARLGSDQDWKGRHVELDIKAHFMKRYNELCPRMVKLTNKASETHETYTFLSKVYEESSKIIDDMLAKKYVDGESGGMVHVSISIANDEIDNVDTVGMAKGIANRESSRKRKKRYKSWIEKKDKKTKMCSKRKRSGENLVQSLPQETTVQATQSSQVGNGTQHQATIQERGESAPVDGGRGAVAAAAVAAVAMGGRERCYLRRKKESLQARGICFRVESA*