AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0031070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031070 MtrunA17_Chr5g0418191 57.616 151 54 1 4 144 262 412 5.99e-55 178
Msa0031070 MtrunA17_Chr5g0418191 55.000 60 26 1 62 121 151 209 3.30e-16 74.3
Msa0031070 MtrunA17_Chr1g0188941 70.536 112 33 0 13 124 2 113 8.21e-51 157
Msa0031070 MtrunA17_Chr1g0188971 87.805 82 10 0 1 82 1 82 2.93e-48 150
Msa0031070 MtrunA17_Chr4g0042831 53.521 142 60 3 4 143 224 361 1.51e-44 150
Msa0031070 MtrunA17_Chr4g0042831 46.914 81 42 1 42 121 124 204 1.71e-15 72.0
Msa0031070 MtrunA17_Chr7g0218081 52.593 135 63 1 4 138 353 486 2.70e-42 146
Msa0031070 MtrunA17_Chr7g0218081 56.452 62 22 2 62 121 228 286 2.65e-15 71.6
Msa0031070 MtrunA17_Chr3g0101131 55.000 120 46 2 12 131 373 484 2.65e-37 134
Msa0031070 MtrunA17_Chr3g0101131 45.205 73 39 1 49 121 230 301 2.93e-14 68.9
Msa0031070 MtrunA17_Chr1g0188961 86.957 69 5 1 82 150 3 67 3.55e-37 122
Msa0031070 MtrunA17_Chr3g0079691 53.659 123 46 1 11 133 455 566 5.89e-37 133
Msa0031070 MtrunA17_Chr3g0079691 51.667 60 28 1 62 121 280 338 3.98e-13 65.5
Msa0031070 MtrunA17_Chr5g0445311 66.279 86 29 0 46 131 348 433 6.30e-36 129
Msa0031070 MtrunA17_Chr5g0445311 50.000 60 29 1 62 121 200 258 5.05e-13 65.5
Msa0031070 MtrunA17_Chr7g0243891 64.706 85 30 0 39 123 351 435 1.02e-34 126
Msa0031070 MtrunA17_Chr7g0243891 56.452 62 26 1 62 123 216 276 4.51e-17 77.0
Msa0031070 MtrunA17_Chr4g0004911 68.354 79 25 0 43 121 317 395 1.16e-34 125
Msa0031070 MtrunA17_Chr4g0004911 53.333 60 28 0 62 121 184 243 2.24e-16 74.7
Msa0031070 MtrunA17_Chr3g0106491 65.882 85 29 0 38 122 341 425 4.54e-34 124
Msa0031070 MtrunA17_Chr3g0106491 46.753 77 36 2 47 123 187 258 3.97e-17 77.0
Msa0031070 MtrunA17_Chr5g0432161 55.200 125 48 4 10 130 370 490 4.96e-34 124
Msa0031070 MtrunA17_Chr5g0432161 55.000 60 26 1 62 121 244 302 2.10e-16 75.1
Msa0031070 MtrunA17_Chr7g0249311 58.696 92 38 0 43 134 373 464 1.92e-32 120
Msa0031070 MtrunA17_Chr7g0249311 51.613 62 29 1 62 123 179 239 5.38e-14 68.2
Msa0031070 MtrunA17_Chr7g0249301 61.728 81 31 0 43 123 273 353 5.88e-31 114
Msa0031070 MtrunA17_Chr7g0249301 51.562 64 28 2 61 123 61 122 3.41e-14 68.6
Msa0031070 MtrunA17_Chr4g0051881 51.546 97 43 1 48 140 164 260 4.21e-29 108
Msa0031070 MtrunA17_Chr1g0194481 54.545 77 35 0 46 122 142 218 6.37e-28 105
Msa0031070 MtrunA17_Chr5g0443131 53.247 77 36 0 48 124 143 219 1.61e-26 101
Msa0031070 MtrunA17_Chr3g0129361 53.488 86 40 0 46 131 128 213 2.47e-26 99.0
Msa0031070 MtrunA17_Chr7g0270191 51.899 79 38 0 43 121 126 204 1.27e-25 98.6
Msa0031070 MtrunA17_Chr2g0294231 52.564 78 37 0 46 123 187 264 4.92e-25 98.6
Msa0031070 MtrunA17_Chr5g0418781 47.525 101 40 2 46 142 108 199 8.04e-25 96.3
Msa0031070 MtrunA17_Chr8g0335811 57.895 76 32 0 43 118 135 210 1.18e-24 94.7
Msa0031070 MtrunA17_Chr8g0383351 51.111 90 43 1 46 134 143 232 1.38e-24 94.7
Msa0031070 MtrunA17_Chr7g0263531 43.519 108 56 1 36 143 335 437 1.72e-24 97.4
Msa0031070 MtrunA17_Chr7g0263531 44.318 88 47 2 63 149 190 276 4.96e-16 73.9
Msa0031070 MtrunA17_Chr1g0150801 41.228 114 58 2 6 118 53 158 2.20e-22 87.0
Msa0031070 MtrunA17_Chr5g0447701 50.000 76 38 0 47 122 237 312 4.72e-22 90.5
Msa0031070 MtrunA17_Chr4g0074001 40.708 113 65 2 10 121 307 418 1.08e-21 90.1
Msa0031070 MtrunA17_Chr8g0383251 49.315 73 37 0 49 121 95 167 1.70e-21 85.5
Msa0031070 MtrunA17_Chr7g0270831 46.591 88 45 2 46 131 200 287 4.46e-21 88.2
Msa0031070 MtrunA17_Chr4g0051181 42.268 97 54 2 27 121 207 303 6.15e-21 87.8
Msa0031070 MtrunA17_Chr3g0129321 38.793 116 64 2 6 121 69 177 1.01e-20 84.0
Msa0031070 MtrunA17_Chr7g0224801 48.101 79 40 1 54 131 85 163 1.15e-20 83.2
Msa0031070 MtrunA17_Chr4g0068541 46.835 79 42 0 46 124 192 270 1.40e-20 86.7
Msa0031070 MtrunA17_Chr8g0386241 50.000 70 35 0 54 123 95 164 1.67e-19 80.1
Msa0031070 MtrunA17_Chr2g0333851 50.000 64 31 1 60 122 167 230 5.60e-19 81.3
Msa0031070 MtrunA17_Chr4g0060271 41.053 95 50 2 28 121 226 315 5.86e-19 82.4
Msa0031070 MtrunA17_Chr2g0302391 45.455 77 41 1 46 121 195 271 6.59e-19 82.0
Msa0031070 MtrunA17_Chr5g0401821 45.882 85 45 1 43 126 180 264 7.28e-19 80.5
Msa0031070 MtrunA17_Chr1g0147881 48.193 83 42 1 43 124 243 325 8.04e-19 81.3
Msa0031070 MtrunA17_Chr7g0216891 45.977 87 43 3 49 131 204 290 1.29e-18 81.3
Msa0031070 MtrunA17_Chr3g0136961 52.542 59 27 1 61 118 137 195 3.13e-18 79.0
Msa0031070 MtrunA17_Chr2g0288871 45.455 77 41 1 46 121 289 365 3.84e-18 80.1
Msa0031070 MtrunA17_Chr1g0189391 54.930 71 31 1 49 118 84 154 4.77e-18 79.0
Msa0031070 MtrunA17_Chr3g0099641 40.217 92 53 2 46 135 235 326 4.96e-18 79.7
Msa0031070 MtrunA17_Chr5g0432071 54.839 62 27 1 62 123 104 164 7.16e-18 76.6
Msa0031070 MtrunA17_Chr4g0075201 44.304 79 43 1 46 123 251 329 7.96e-18 79.0
Msa0031070 MtrunA17_Chr7g0238921 57.627 59 25 0 60 118 122 180 9.20e-18 77.8
Msa0031070 MtrunA17_Chr2g0322391 44.304 79 43 1 46 123 333 411 1.30e-17 78.6
Msa0031070 MtrunA17_Chr1g0184691 44.318 88 47 2 42 127 273 360 2.02e-17 77.4
Msa0031070 MtrunA17_Chr4g0053281 44.706 85 46 1 43 126 247 331 2.25e-17 77.0
Msa0031070 MtrunA17_Chr4g0025061 38.679 106 63 2 44 147 342 447 2.69e-17 77.4
Msa0031070 MtrunA17_Chr5g0447711 37.805 82 51 0 47 128 215 296 3.36e-17 76.3
Msa0031070 MtrunA17_Chr7g0248721 45.000 80 43 1 39 118 118 196 6.66e-17 74.3
Msa0031070 MtrunA17_Chr6g0485431 51.562 64 30 1 59 121 151 214 6.84e-17 75.9
Msa0031070 MtrunA17_Chr1g0150281 41.026 78 43 2 44 118 120 197 7.14e-17 75.1
Msa0031070 MtrunA17_Chr4g0001361 47.619 63 32 1 60 121 160 222 1.23e-16 74.7
Msa0031070 MtrunA17_Chr7g0270051 43.243 74 41 1 60 132 51 124 2.44e-16 73.6
Msa0031070 MtrunA17_Chr4g0025051 36.066 122 72 3 28 147 305 422 4.23e-16 74.3
Msa0031070 MtrunA17_Chr4g0071521 45.455 77 41 1 43 118 226 302 6.02e-16 73.2
Msa0031070 MtrunA17_Chr2g0319961 37.398 123 56 4 17 132 41 149 1.22e-15 71.6
Msa0031070 MtrunA17_Chr8g0379461 48.485 66 33 1 63 127 77 142 2.71e-15 70.5
Msa0031070 MtrunA17_Chr1g0150271 42.857 63 35 1 60 121 99 161 3.16e-15 70.5
Msa0031070 MtrunA17_Chr8g0387501 44.872 78 39 2 61 134 128 205 3.27e-15 70.5
Msa0031070 MtrunA17_Chr3g0139021 44.872 78 42 1 43 119 295 372 3.39e-15 71.2
Msa0031070 MtrunA17_Chr2g0293481 50.820 61 29 1 63 122 268 328 7.74e-15 70.5
Msa0031070 MtrunA17_Chr2g0284321 43.590 78 43 1 63 139 36 113 2.61e-14 67.4
Msa0031070 MtrunA17_Chr8g0348311 48.611 72 33 2 60 127 153 224 2.70e-14 68.6
Msa0031070 MtrunA17_Chr7g0248691 48.611 72 33 2 60 127 152 223 3.91e-14 68.2
Msa0031070 MtrunA17_Chr2g0289181 47.826 69 35 1 59 126 11 79 6.10e-14 66.6
Msa0031070 MtrunA17_Chr7g0228941 43.056 72 40 1 49 119 39 110 6.34e-14 64.3
Msa0031070 MtrunA17_Chr1g0202461 46.154 65 34 1 59 122 258 322 5.73e-13 65.1
Msa0031070 MtrunA17_Chr3g0126391 50.847 59 26 1 61 116 132 190 7.68e-13 64.3
Msa0031070 MtrunA17_Chr4g0024391 38.372 86 50 2 49 133 216 299 7.11e-12 62.0
Msa0031070 MtrunA17_Chr8g0387981 48.276 58 27 1 62 116 132 189 9.85e-12 61.2
Msa0031070 MtrunA17_Chr7g0275531 47.458 59 28 1 61 116 117 175 4.73e-11 59.3
Msa0031070 MtrunA17_Chr5g0419241 45.455 44 24 0 46 89 61 104 6.31e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031070 AT2G03340.1 56.923 130 55 1 2 130 354 483 1.09e-43 150
Msa0031070 AT2G03340.1 50.746 67 32 1 62 128 250 315 7.56e-16 73.9
Msa0031070 AT1G13960.2 58.197 122 49 2 2 121 194 315 5.79e-43 145
Msa0031070 AT1G13960.2 56.667 60 25 1 62 121 76 134 3.00e-17 77.4
Msa0031070 AT1G13960.1 58.197 122 49 2 2 121 347 468 3.95e-42 146
Msa0031070 AT1G13960.1 56.667 60 25 1 62 121 229 287 1.92e-17 78.2
Msa0031070 AT5G56270.1 63.265 98 35 1 26 123 452 548 2.02e-37 135
Msa0031070 AT5G56270.1 53.333 60 27 1 62 121 273 331 2.73e-14 69.3
Msa0031070 AT4G26640.5 59.434 106 41 1 22 127 167 270 2.69e-36 129
Msa0031070 AT4G26640.5 51.613 62 29 1 60 121 33 93 6.98e-14 67.8
Msa0031070 AT4G26640.6 59.434 106 41 1 22 127 167 270 2.69e-36 129
Msa0031070 AT4G26640.6 51.613 62 29 1 60 121 33 93 6.98e-14 67.8
Msa0031070 AT4G26640.4 59.434 106 41 1 22 127 167 270 2.69e-36 129
Msa0031070 AT4G26640.4 51.613 62 29 1 60 121 33 93 6.98e-14 67.8
Msa0031070 AT4G26640.3 59.434 106 41 1 22 127 167 270 2.69e-36 129
Msa0031070 AT4G26640.3 51.613 62 29 1 60 121 33 93 6.98e-14 67.8
Msa0031070 AT4G26640.1 59.434 106 41 1 22 127 271 374 7.21e-36 129
Msa0031070 AT4G26640.1 51.613 62 29 1 60 121 137 197 5.53e-14 68.6
Msa0031070 AT4G26440.1 53.913 115 52 1 14 128 325 438 8.37e-36 130
Msa0031070 AT4G26440.1 51.667 60 28 1 62 121 178 236 4.67e-14 68.6
Msa0031070 AT4G26640.7 59.434 106 41 1 22 127 303 406 9.14e-36 129
Msa0031070 AT4G26640.7 51.613 62 29 1 60 121 169 229 5.25e-14 68.6
Msa0031070 AT4G26640.2 59.434 106 41 1 22 127 343 446 1.23e-35 129
Msa0031070 AT4G26640.2 51.613 62 29 1 60 121 209 269 5.13e-14 68.6
Msa0031070 AT5G07100.2 68.831 77 24 0 46 122 125 201 1.72e-35 122
Msa0031070 AT5G07100.2 48.571 70 36 0 62 131 24 93 1.17e-17 76.6
Msa0031070 AT5G07100.4 68.831 77 24 0 46 122 125 201 1.72e-35 122
Msa0031070 AT5G07100.4 48.571 70 36 0 62 131 24 93 1.17e-17 76.6
Msa0031070 AT5G07100.5 68.831 77 24 0 46 122 125 201 1.72e-35 122
Msa0031070 AT5G07100.5 48.571 70 36 0 62 131 24 93 1.17e-17 76.6
Msa0031070 AT5G07100.3 68.831 77 24 0 46 122 125 201 1.72e-35 122
Msa0031070 AT5G07100.3 48.571 70 36 0 62 131 24 93 1.17e-17 76.6
Msa0031070 AT2G38470.1 52.381 126 51 1 7 123 298 423 4.12e-35 127
Msa0031070 AT2G38470.1 53.333 60 27 1 62 121 184 242 9.56e-16 73.6
Msa0031070 AT5G07100.1 68.831 77 24 0 46 122 218 294 7.26e-35 123
Msa0031070 AT5G07100.1 48.571 70 36 0 62 131 117 186 2.06e-17 77.4
Msa0031070 AT3G01080.1 58.696 92 38 0 30 121 274 365 3.62e-34 124
Msa0031070 AT3G01080.1 51.667 60 28 1 62 121 167 225 7.16e-13 65.1
Msa0031070 AT3G01080.2 58.696 92 38 0 30 121 312 403 4.64e-34 124
Msa0031070 AT3G01080.2 51.667 60 28 1 62 121 205 263 6.02e-13 65.5
Msa0031070 AT2G30250.1 58.537 82 34 0 46 127 312 393 1.18e-30 114
Msa0031070 AT2G30250.1 41.758 91 49 3 31 121 138 224 1.33e-11 61.6
Msa0031070 AT4G18170.1 43.590 117 52 2 8 124 132 234 4.34e-30 111
Msa0031070 AT1G29860.1 54.430 79 36 0 46 124 120 198 3.15e-28 105
Msa0031070 AT5G46350.1 53.333 75 35 0 48 122 169 243 1.84e-26 102
Msa0031070 AT2G47260.1 51.282 78 38 0 46 123 158 235 6.04e-26 100
Msa0031070 AT3G01970.1 48.913 92 47 0 49 140 52 143 8.69e-26 95.9
Msa0031070 AT5G49520.1 55.128 78 35 0 46 123 205 282 2.31e-25 100
Msa0031070 AT2G44745.1 57.895 76 32 0 43 118 126 201 5.91e-25 95.5
Msa0031070 AT4G39410.1 52.747 91 38 1 43 128 204 294 6.68e-25 97.4
Msa0031070 AT2G04880.2 40.800 125 70 2 4 128 229 349 8.13e-25 99.0
Msa0031070 AT2G04880.2 37.391 115 58 3 13 125 71 173 3.87e-16 74.7
Msa0031070 AT2G04880.1 40.800 125 70 2 4 128 253 373 9.50e-25 99.0
Msa0031070 AT2G04880.1 37.391 115 58 3 13 125 71 173 4.76e-16 74.3
Msa0031070 AT5G13080.1 45.652 92 50 0 49 140 54 145 2.43e-24 92.0
Msa0031070 AT5G26170.1 54.286 70 32 0 49 118 100 169 5.09e-24 92.0
Msa0031070 AT3G62340.1 52.703 74 35 0 48 121 104 177 2.55e-23 92.8
Msa0031070 AT1G69310.4 54.795 73 33 0 46 118 131 203 2.56e-23 92.8
Msa0031070 AT1G69310.2 54.795 73 33 0 46 118 131 203 2.56e-23 92.8
Msa0031070 AT1G69310.1 54.795 73 33 0 46 118 131 203 2.56e-23 92.8
Msa0031070 AT5G41570.1 43.564 101 57 0 43 143 79 179 4.68e-23 89.7
Msa0031070 AT1G68150.1 39.837 123 68 3 15 131 186 308 1.21e-22 92.4
Msa0031070 AT5G64810.1 54.930 71 32 0 49 119 97 167 1.31e-22 89.0
Msa0031070 AT1G64000.1 50.000 80 40 0 39 118 91 170 1.58e-21 86.3
Msa0031070 AT2G21900.1 43.750 96 50 2 31 122 74 169 1.93e-21 86.3
Msa0031070 AT4G04450.2 41.414 99 56 2 29 126 166 263 4.12e-21 88.6
Msa0031070 AT2G37260.3 55.556 72 32 0 59 130 266 337 4.66e-21 87.8
Msa0031070 AT2G37260.3 43.617 94 45 3 63 149 86 178 4.27e-15 71.2
Msa0031070 AT2G37260.2 55.556 72 32 0 59 130 264 335 4.96e-21 87.4
Msa0031070 AT2G37260.2 43.617 94 45 3 63 149 84 176 4.82e-15 71.2
Msa0031070 AT4G30935.1 42.718 103 56 2 20 121 290 390 5.99e-21 88.2
Msa0031070 AT2G37260.1 55.556 72 32 0 59 130 346 417 7.37e-21 87.8
Msa0031070 AT2G37260.1 43.617 94 45 3 63 149 166 258 5.46e-15 71.2
Msa0031070 AT1G55600.1 50.000 88 43 1 34 121 280 366 2.60e-20 86.7
Msa0031070 AT1G62300.1 46.753 77 40 1 46 121 296 372 8.26e-20 85.1
Msa0031070 AT5G15130.1 44.211 95 44 3 61 146 226 320 1.64e-19 84.3
Msa0031070 AT5G15130.2 44.211 95 44 3 61 146 184 278 1.80e-19 84.0
Msa0031070 AT2G46130.1 47.945 73 38 0 46 118 14 86 8.37e-19 77.0
Msa0031070 AT1G80840.1 42.857 77 43 1 60 135 144 220 9.16e-19 80.9
Msa0031070 AT4G04450.1 40.385 104 60 2 24 126 255 357 1.06e-18 82.0
Msa0031070 AT1G69310.3 50.685 73 32 1 46 118 131 199 2.60e-18 79.3
Msa0031070 AT2G25000.2 46.774 62 32 1 61 121 102 163 4.59e-18 77.8
Msa0031070 AT2G25000.4 46.774 62 32 1 61 121 102 163 4.59e-18 77.8
Msa0031070 AT2G25000.3 46.774 62 32 1 61 121 124 185 8.76e-18 77.4
Msa0031070 AT4G22070.4 46.753 77 40 1 46 121 281 357 1.04e-17 79.0
Msa0031070 AT4G22070.3 46.753 77 40 1 46 121 281 357 1.04e-17 79.0
Msa0031070 AT4G22070.2 46.753 77 40 1 46 121 281 357 1.04e-17 79.0
Msa0031070 AT4G22070.1 46.753 77 40 1 46 121 281 357 1.04e-17 79.0
Msa0031070 AT2G25000.1 46.774 62 32 1 61 121 145 206 1.18e-17 77.4
Msa0031070 AT4G31550.2 48.718 78 39 1 43 119 226 303 1.45e-17 77.8
Msa0031070 AT4G31550.1 48.718 78 39 1 43 119 227 304 1.47e-17 77.8
Msa0031070 AT1G18860.1 41.558 77 44 1 46 121 223 299 1.84e-17 78.6
Msa0031070 AT4G31800.2 41.772 79 38 2 61 131 110 188 2.10e-17 76.3
Msa0031070 AT3G58710.2 40.157 127 55 5 17 134 31 145 2.19e-17 76.6
Msa0031070 AT4G31800.1 41.772 79 38 2 61 131 175 253 2.85e-17 77.0
Msa0031070 AT3G58710.1 39.844 128 55 5 17 134 31 146 3.08e-17 76.3
Msa0031070 AT4G01720.1 45.455 77 41 1 46 121 223 299 1.19e-16 75.9
Msa0031070 AT4G24240.1 46.575 73 38 1 49 120 268 340 1.27e-16 75.5
Msa0031070 AT2G23320.1 49.315 73 36 1 49 120 227 299 1.82e-16 74.7
Msa0031070 AT4G23550.1 49.231 65 32 1 59 122 137 201 3.77e-16 73.9
Msa0031070 AT4G12020.11 50.000 82 40 1 2 82 580 661 3.98e-16 74.7
Msa0031070 AT4G12020.11 41.176 85 41 2 61 137 467 550 6.14e-13 65.5
Msa0031070 AT4G12020.6 50.000 82 40 1 2 82 580 661 4.80e-16 74.7
Msa0031070 AT4G12020.6 41.176 85 41 2 61 137 467 550 4.88e-13 65.9
Msa0031070 AT4G12020.8 50.000 82 40 1 2 82 580 661 4.80e-16 74.7
Msa0031070 AT4G12020.8 41.176 85 41 2 61 137 467 550 4.88e-13 65.9
Msa0031070 AT4G12020.1 50.000 82 40 1 2 82 580 661 5.39e-16 74.3
Msa0031070 AT4G12020.1 36.735 98 53 2 61 150 467 563 4.98e-13 65.9
Msa0031070 AT4G12020.9 50.000 82 40 1 2 82 580 661 5.39e-16 74.3
Msa0031070 AT4G12020.9 36.735 98 53 2 61 150 467 563 4.98e-13 65.9
Msa0031070 AT4G12020.10 50.000 82 40 1 2 82 580 661 5.40e-16 74.3
Msa0031070 AT4G12020.10 41.176 85 41 2 61 137 467 550 4.80e-13 65.9
Msa0031070 AT4G12020.7 50.000 82 40 1 2 82 580 661 5.50e-16 74.3
Msa0031070 AT4G12020.7 36.735 98 53 2 61 150 467 563 4.89e-13 65.9
Msa0031070 AT4G12020.3 50.000 82 40 1 2 82 580 661 5.56e-16 74.3
Msa0031070 AT4G12020.3 41.176 85 41 2 61 137 467 550 5.09e-13 65.9
Msa0031070 AT4G12020.2 50.000 82 40 1 2 82 580 661 5.56e-16 74.3
Msa0031070 AT4G12020.2 36.735 98 53 2 61 150 467 563 4.90e-13 65.9
Msa0031070 AT5G43290.1 54.237 59 27 0 60 118 112 170 5.57e-16 73.2
Msa0031070 AT4G12020.4 50.000 82 40 1 2 82 580 661 5.84e-16 74.3
Msa0031070 AT4G12020.4 41.176 85 41 2 61 137 467 550 4.95e-13 65.9
Msa0031070 AT2G24570.1 45.679 81 43 1 43 122 224 304 6.52e-16 73.2
Msa0031070 AT4G12020.5 50.000 82 40 1 2 82 513 594 6.67e-16 73.9
Msa0031070 AT4G12020.5 36.735 98 53 2 61 150 400 496 5.23e-13 65.9
Msa0031070 AT5G28650.1 43.182 88 49 1 43 129 243 330 6.80e-16 73.2
Msa0031070 AT2G30590.1 46.154 78 41 1 42 118 293 370 7.43e-16 73.6
Msa0031070 AT3G04670.1 43.182 88 49 1 43 129 243 330 1.01e-15 72.8
Msa0031070 AT4G01250.1 44.444 81 41 2 60 139 126 203 2.71e-15 71.2
Msa0031070 AT2G34830.1 50.820 61 29 1 63 122 216 276 1.32e-14 70.1
Msa0031070 AT2G34830.2 50.820 61 29 1 63 122 225 285 1.53e-14 70.1
Msa0031070 AT5G52830.1 45.000 80 40 2 52 127 155 234 2.33e-14 69.3
Msa0031070 AT2G46130.2 42.105 76 40 1 43 118 11 82 8.65e-14 63.9
Msa0031070 AT5G45050.4 49.180 61 30 1 63 122 1042 1102 9.36e-14 67.8
Msa0031070 AT5G45050.2 49.180 61 30 1 63 122 1153 1213 9.42e-14 67.8
Msa0031070 AT5G45050.1 49.180 61 30 1 63 122 1181 1241 9.43e-14 67.8
Msa0031070 AT1G29280.1 48.333 60 30 1 63 121 75 134 1.14e-13 66.6
Msa0031070 AT1G30650.1 50.000 60 29 1 63 121 218 277 1.18e-13 67.4
Msa0031070 AT3G01080.3 51.667 60 28 1 62 121 205 263 4.29e-13 65.5
Msa0031070 AT1G69810.2 35.556 90 54 3 46 133 129 216 5.16e-13 65.5
Msa0031070 AT1G69810.1 35.556 90 54 3 46 133 187 274 5.20e-13 65.5
Msa0031070 AT3G56400.1 34.021 97 53 3 39 128 101 193 5.42e-12 62.4
Msa0031070 AT5G45260.1 33.333 93 55 3 35 122 1181 1271 6.43e-11 59.7

Find 34 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTTATTATATTTATTCT+AGG 0.291981 1_1:+57635526 None:intergenic
AAGCAATATCACCTAGGATT+AGG 0.314028 1_1:+57635433 None:intergenic
TATATTTATTCTAGGCTCTC+TGG 0.325412 1_1:+57635534 None:intergenic
TCTTAGACGATGGGTATAAT+TGG 0.326535 1_1:-57635489 Msa0031070:CDS
AGCAATATCACCTAGGATTA+GGG 0.361293 1_1:+57635434 None:intergenic
ATCAAATAGGTTCTTCATAC+AGG 0.365999 1_1:-57635561 Msa0031070:CDS
TCATGACGTTCCAACATCTA+TGG 0.377282 1_1:-57634308 Msa0031070:CDS
GGGTATAATTGGAGAAAATA+CGG 0.415689 1_1:-57635478 Msa0031070:CDS
TTGTTGAACCTGGCCCAAAA+AGG 0.423604 1_1:-57635693 Msa0031070:CDS
GTCTAAGAGATCAATCTTGC+TGG 0.427915 1_1:+57635504 None:intergenic
TTTGACAGTATTGGTAATGA+TGG 0.429426 1_1:-57634241 Msa0031070:CDS
TACGTTGTGATGACATCTTT+AGG 0.433584 1_1:+57634346 None:intergenic
ATCGCGATCTTAAATCAAAT+AGG 0.461929 1_1:-57635574 Msa0031070:CDS
AAAACTAGGCTCCTCAGAAA+TGG 0.462177 1_1:+57634261 None:intergenic
AAGATTGATCTCTTAGACGA+TGG 0.474858 1_1:-57635499 Msa0031070:CDS
ATATTTATTCTAGGCTCTCT+GGG 0.501640 1_1:+57635535 None:intergenic
GAAAGCGTGTAGAGAGAGCT+TGG 0.508767 1_1:-57634375 Msa0031070:CDS
GCATAGGAAACCCTAATCCT+AGG 0.512114 1_1:-57635444 Msa0031070:intron
TACTACAAATGTACGGTACC+AGG 0.527593 1_1:-57634409 Msa0031070:CDS
GGTATAATTGGAGAAAATAC+GGG 0.531076 1_1:-57635477 Msa0031070:CDS
GATGTCATCACAACGTATGT+AGG 0.533158 1_1:-57634340 Msa0031070:CDS
TGGCTATTAGCCATAGATGT+TGG 0.542428 1_1:+57634298 None:intergenic
CGCTTTCGAATGCTACAACC+TGG 0.550383 1_1:+57634391 None:intergenic
CCAAGCGAAAATGAAGAACT+AGG 0.556758 1_1:-57635745 Msa0031070:CDS
AGGCTCCTCAGAAATGGTGT+TGG 0.564390 1_1:+57634267 None:intergenic
AAAGCGTGTAGAGAGAGCTT+GGG 0.573571 1_1:-57634374 Msa0031070:CDS
TTACCAATACTGTCAAAACT+AGG 0.583308 1_1:+57634247 None:intergenic
AGATTGATCTCTTAGACGAT+GGG 0.583924 1_1:-57635498 Msa0031070:CDS
TATTTCCAACACCATTTCTG+AGG 0.589759 1_1:-57634272 Msa0031070:CDS
GCGTGTAGAGAGAGCTTGGG+TGG 0.595065 1_1:-57634371 Msa0031070:CDS
TAGGAGCTACTACAAATGTA+CGG 0.634951 1_1:-57634416 Msa0031070:CDS
TACGGGCAACGAGTTTGCAT+AGG 0.651147 1_1:-57635460 Msa0031070:CDS
AAATGGTGTTGGAAATAGTG+TGG 0.703460 1_1:+57634278 None:intergenic
AGCGAAAATGAAGAACTAGG+TGG 0.762878 1_1:-57635742 Msa0031070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTGTTATTATATTTATTCT+AGG + chr1_1:57634456-57634475 None:intergenic 15.0%
!! AATCTATTGTAAATGAAATT+AGG - chr1_1:57635295-57635314 Msa0031070:intron 15.0%
!! ATCTATTGTAAATGAAATTA+GGG - chr1_1:57635296-57635315 Msa0031070:intron 15.0%
!!! GTTGTTATTATATTTATTCT+AGG + chr1_1:57634456-57634475 None:intergenic 15.0%
!! AATCTATTGTAAATGAAATT+AGG - chr1_1:57635295-57635314 Msa0031070:intron 15.0%
!! ATCTATTGTAAATGAAATTA+GGG - chr1_1:57635296-57635315 Msa0031070:intron 15.0%
!! TAGATAAAATTAAAGTGTGA+AGG + chr1_1:57634574-57634593 None:intergenic 20.0%
!!! GAATAATTGAACTCATTTTT+TGG + chr1_1:57634647-57634666 None:intergenic 20.0%
!! AATTATTCATATTCACTAGT+AGG - chr1_1:57634659-57634678 Msa0031070:intron 20.0%
!! TTATCCATGAATTATACTAT+AGG + chr1_1:57634799-57634818 None:intergenic 20.0%
!! TTTCGATAGAAAAAAATATG+TGG - chr1_1:57635261-57635280 Msa0031070:intron 20.0%
!! ATAGAAAAAAATATGTGGTT+TGG - chr1_1:57635266-57635285 Msa0031070:intron 20.0%
!! AAATAATACATGAAATTCAG+GGG + chr1_1:57635466-57635485 None:intergenic 20.0%
!! CAAATAATACATGAAATTCA+GGG + chr1_1:57635467-57635486 None:intergenic 20.0%
!! ACAAATAATACATGAAATTC+AGG + chr1_1:57635468-57635487 None:intergenic 20.0%
!! TAGATAAAATTAAAGTGTGA+AGG + chr1_1:57634574-57634593 None:intergenic 20.0%
!!! GAATAATTGAACTCATTTTT+TGG + chr1_1:57634647-57634666 None:intergenic 20.0%
!! AATTATTCATATTCACTAGT+AGG - chr1_1:57634659-57634678 Msa0031070:intron 20.0%
!! TTATCCATGAATTATACTAT+AGG + chr1_1:57634799-57634818 None:intergenic 20.0%
!! TTTCGATAGAAAAAAATATG+TGG - chr1_1:57635261-57635280 Msa0031070:intron 20.0%
!! ATAGAAAAAAATATGTGGTT+TGG - chr1_1:57635266-57635285 Msa0031070:intron 20.0%
!! AAATAATACATGAAATTCAG+GGG + chr1_1:57635466-57635485 None:intergenic 20.0%
!! CAAATAATACATGAAATTCA+GGG + chr1_1:57635467-57635486 None:intergenic 20.0%
!! ACAAATAATACATGAAATTC+AGG + chr1_1:57635468-57635487 None:intergenic 20.0%
! GACTTGTAATATTAAAACAC+CGG - chr1_1:57634830-57634849 Msa0031070:intron 25.0%
! TTGTAAATGAAATTAGGGTT+AGG - chr1_1:57635301-57635320 Msa0031070:intron 25.0%
! AATAATACATGAAATTCAGG+GGG + chr1_1:57635465-57635484 None:intergenic 25.0%
! GACTTGTAATATTAAAACAC+CGG - chr1_1:57634830-57634849 Msa0031070:intron 25.0%
! TTGTAAATGAAATTAGGGTT+AGG - chr1_1:57635301-57635320 Msa0031070:intron 25.0%
! AATAATACATGAAATTCAGG+GGG + chr1_1:57635465-57635484 None:intergenic 25.0%
! ATAAAACCTACCTCCTTTTT+GGG + chr1_1:57634302-57634321 None:intergenic 30.0%
! AATAAAACCTACCTCCTTTT+TGG + chr1_1:57634303-57634322 None:intergenic 30.0%
AAATGCAAATATGTTTGTCG+TGG - chr1_1:57634325-57634344 Msa0031070:CDS 30.0%
ATCGCGATCTTAAATCAAAT+AGG - chr1_1:57634405-57634424 Msa0031070:CDS 30.0%
ATCAAATAGGTTCTTCATAC+AGG - chr1_1:57634418-57634437 Msa0031070:intron 30.0%
ATATTTATTCTAGGCTCTCT+GGG + chr1_1:57634447-57634466 None:intergenic 30.0%
TATATTTATTCTAGGCTCTC+TGG + chr1_1:57634448-57634467 None:intergenic 30.0%
GGGTATAATTGGAGAAAATA+CGG - chr1_1:57634501-57634520 Msa0031070:intron 30.0%
GGTATAATTGGAGAAAATAC+GGG - chr1_1:57634502-57634521 Msa0031070:intron 30.0%
TGAGTTATCCATGAATGATA+TGG - chr1_1:57634595-57634614 Msa0031070:intron 30.0%
AAAGACAACCATATCATTCA+TGG + chr1_1:57634606-57634625 None:intergenic 30.0%
TCCTCCTATAGTATAATTCA+TGG - chr1_1:57634792-57634811 Msa0031070:intron 30.0%
TCCATGAATTATACTATAGG+AGG + chr1_1:57634796-57634815 None:intergenic 30.0%
CTTAGAGTTACAAATTCTAC+CGG + chr1_1:57634852-57634871 None:intergenic 30.0%
ATTTGATCACAAAGTTCAAC+AGG + chr1_1:57634913-57634932 None:intergenic 30.0%
TTACATGAGCATATCGTTTA+CGG + chr1_1:57635377-57635396 None:intergenic 30.0%
TTACCAATACTGTCAAAACT+AGG + chr1_1:57635735-57635754 None:intergenic 30.0%
!! TTTGACAGTATTGGTAATGA+TGG - chr1_1:57635738-57635757 Msa0031070:CDS 30.0%
! ATAAAACCTACCTCCTTTTT+GGG + chr1_1:57634302-57634321 None:intergenic 30.0%
! AATAAAACCTACCTCCTTTT+TGG + chr1_1:57634303-57634322 None:intergenic 30.0%
AAATGCAAATATGTTTGTCG+TGG - chr1_1:57634325-57634344 Msa0031070:CDS 30.0%
ATCGCGATCTTAAATCAAAT+AGG - chr1_1:57634405-57634424 Msa0031070:CDS 30.0%
ATCAAATAGGTTCTTCATAC+AGG - chr1_1:57634418-57634437 Msa0031070:intron 30.0%
ATATTTATTCTAGGCTCTCT+GGG + chr1_1:57634447-57634466 None:intergenic 30.0%
TATATTTATTCTAGGCTCTC+TGG + chr1_1:57634448-57634467 None:intergenic 30.0%
GGGTATAATTGGAGAAAATA+CGG - chr1_1:57634501-57634520 Msa0031070:intron 30.0%
GGTATAATTGGAGAAAATAC+GGG - chr1_1:57634502-57634521 Msa0031070:intron 30.0%
TGAGTTATCCATGAATGATA+TGG - chr1_1:57634595-57634614 Msa0031070:intron 30.0%
AAAGACAACCATATCATTCA+TGG + chr1_1:57634606-57634625 None:intergenic 30.0%
TCCTCCTATAGTATAATTCA+TGG - chr1_1:57634792-57634811 Msa0031070:intron 30.0%
TCCATGAATTATACTATAGG+AGG + chr1_1:57634796-57634815 None:intergenic 30.0%
CTTAGAGTTACAAATTCTAC+CGG + chr1_1:57634852-57634871 None:intergenic 30.0%
ATTTGATCACAAAGTTCAAC+AGG + chr1_1:57634913-57634932 None:intergenic 30.0%
TTACATGAGCATATCGTTTA+CGG + chr1_1:57635377-57635396 None:intergenic 30.0%
TTACCAATACTGTCAAAACT+AGG + chr1_1:57635735-57635754 None:intergenic 30.0%
!! TTTGACAGTATTGGTAATGA+TGG - chr1_1:57635738-57635757 Msa0031070:CDS 30.0%
GATCGAAAAATTGTTGAACC+TGG - chr1_1:57634276-57634295 Msa0031070:CDS 35.0%
AAGATTGATCTCTTAGACGA+TGG - chr1_1:57634480-57634499 Msa0031070:intron 35.0%
AGATTGATCTCTTAGACGAT+GGG - chr1_1:57634481-57634500 Msa0031070:intron 35.0%
TCTTAGACGATGGGTATAAT+TGG - chr1_1:57634490-57634509 Msa0031070:intron 35.0%
AGCAATATCACCTAGGATTA+GGG + chr1_1:57634548-57634567 None:intergenic 35.0%
AAGCAATATCACCTAGGATT+AGG + chr1_1:57634549-57634568 None:intergenic 35.0%
! CCACTTGTTGGTAAACTATA+TGG + chr1_1:57634733-57634752 None:intergenic 35.0%
CCATATAGTTTACCAACAAG+TGG - chr1_1:57634730-57634749 Msa0031070:intron 35.0%
ATGTCTCTTAAGCTGACAAT+GGG - chr1_1:57634755-57634774 Msa0031070:intron 35.0%
ATCCACACAAGAATCGAAAT+CGG - chr1_1:57635046-57635065 Msa0031070:intron 35.0%
TGATTGTGAAAATGTGGGTT+GGG + chr1_1:57635168-57635187 None:intergenic 35.0%
TTGATTGTGAAAATGTGGGT+TGG + chr1_1:57635169-57635188 None:intergenic 35.0%
GGGTTTGATTGTGAAAATGT+GGG + chr1_1:57635173-57635192 None:intergenic 35.0%
!! ACAAATGGGTTGATTAGGTT+CGG + chr1_1:57635194-57635213 None:intergenic 35.0%
CTAATCAACCCATTTGTGAA+CGG - chr1_1:57635197-57635216 Msa0031070:intron 35.0%
!! TATTTTAGACGCAAAATCCG+CGG + chr1_1:57635230-57635249 None:intergenic 35.0%
ATACCTGAAACCAAACTTTG+TGG - chr1_1:57635334-57635353 Msa0031070:intron 35.0%
TACCTGAAACCAAACTTTGT+GGG - chr1_1:57635335-57635354 Msa0031070:intron 35.0%
TACATGAGCATATCGTTTAC+GGG + chr1_1:57635376-57635395 None:intergenic 35.0%
CGATATGCTCATGTAATTAG+TGG - chr1_1:57635381-57635400 Msa0031070:intron 35.0%
TGCTTGCCTGTATAATGTTT+AGG - chr1_1:57635544-57635563 Msa0031070:CDS 35.0%
GTAGCTCCTAAACATTATAC+AGG + chr1_1:57635553-57635572 None:intergenic 35.0%
TAGGAGCTACTACAAATGTA+CGG - chr1_1:57635563-57635582 Msa0031070:CDS 35.0%
TACGTTGTGATGACATCTTT+AGG + chr1_1:57635636-57635655 None:intergenic 35.0%
! AAATGGTGTTGGAAATAGTG+TGG + chr1_1:57635704-57635723 None:intergenic 35.0%
TATTTCCAACACCATTTCTG+AGG - chr1_1:57635707-57635726 Msa0031070:CDS 35.0%
GATCGAAAAATTGTTGAACC+TGG - chr1_1:57634276-57634295 Msa0031070:CDS 35.0%
AAGATTGATCTCTTAGACGA+TGG - chr1_1:57634480-57634499 Msa0031070:intron 35.0%
AGATTGATCTCTTAGACGAT+GGG - chr1_1:57634481-57634500 Msa0031070:intron 35.0%
TCTTAGACGATGGGTATAAT+TGG - chr1_1:57634490-57634509 Msa0031070:intron 35.0%
AGCAATATCACCTAGGATTA+GGG + chr1_1:57634548-57634567 None:intergenic 35.0%
AAGCAATATCACCTAGGATT+AGG + chr1_1:57634549-57634568 None:intergenic 35.0%
! CCACTTGTTGGTAAACTATA+TGG + chr1_1:57634733-57634752 None:intergenic 35.0%
CCATATAGTTTACCAACAAG+TGG - chr1_1:57634730-57634749 Msa0031070:intron 35.0%
ATGTCTCTTAAGCTGACAAT+GGG - chr1_1:57634755-57634774 Msa0031070:intron 35.0%
ATCCACACAAGAATCGAAAT+CGG - chr1_1:57635046-57635065 Msa0031070:intron 35.0%
TGATTGTGAAAATGTGGGTT+GGG + chr1_1:57635168-57635187 None:intergenic 35.0%
TTGATTGTGAAAATGTGGGT+TGG + chr1_1:57635169-57635188 None:intergenic 35.0%
GGGTTTGATTGTGAAAATGT+GGG + chr1_1:57635173-57635192 None:intergenic 35.0%
!! ACAAATGGGTTGATTAGGTT+CGG + chr1_1:57635194-57635213 None:intergenic 35.0%
CTAATCAACCCATTTGTGAA+CGG - chr1_1:57635197-57635216 Msa0031070:intron 35.0%
!! TATTTTAGACGCAAAATCCG+CGG + chr1_1:57635230-57635249 None:intergenic 35.0%
ATACCTGAAACCAAACTTTG+TGG - chr1_1:57635334-57635353 Msa0031070:intron 35.0%
TACCTGAAACCAAACTTTGT+GGG - chr1_1:57635335-57635354 Msa0031070:intron 35.0%
TACATGAGCATATCGTTTAC+GGG + chr1_1:57635376-57635395 None:intergenic 35.0%
CGATATGCTCATGTAATTAG+TGG - chr1_1:57635381-57635400 Msa0031070:intron 35.0%
TGCTTGCCTGTATAATGTTT+AGG - chr1_1:57635544-57635563 Msa0031070:CDS 35.0%
GTAGCTCCTAAACATTATAC+AGG + chr1_1:57635553-57635572 None:intergenic 35.0%
TAGGAGCTACTACAAATGTA+CGG - chr1_1:57635563-57635582 Msa0031070:CDS 35.0%
TACGTTGTGATGACATCTTT+AGG + chr1_1:57635636-57635655 None:intergenic 35.0%
! AAATGGTGTTGGAAATAGTG+TGG + chr1_1:57635704-57635723 None:intergenic 35.0%
TATTTCCAACACCATTTCTG+AGG - chr1_1:57635707-57635726 Msa0031070:CDS 35.0%
!! CCTAGTTCTTCATTTTCGCT+TGG + chr1_1:57634237-57634256 None:intergenic 40.0%
CCAAGCGAAAATGAAGAACT+AGG - chr1_1:57634234-57634253 Msa0031070:CDS 40.0%
AGCGAAAATGAAGAACTAGG+TGG - chr1_1:57634237-57634256 Msa0031070:CDS 40.0%
GTCTAAGAGATCAATCTTGC+TGG + chr1_1:57634478-57634497 None:intergenic 40.0%
AAGGAGAAGCAATATCACCT+AGG + chr1_1:57634555-57634574 None:intergenic 40.0%
TAAGAGACATGTCCACTTGT+TGG + chr1_1:57634745-57634764 None:intergenic 40.0%
CATGTCTCTTAAGCTGACAA+TGG - chr1_1:57634754-57634773 Msa0031070:intron 40.0%
TGTCTCTTAAGCTGACAATG+GGG - chr1_1:57634756-57634775 Msa0031070:intron 40.0%
ACCCTCTAGATTTCAAGAGA+AGG - chr1_1:57634970-57634989 Msa0031070:intron 40.0%
CCCTTCTCTTGAAATCTAGA+GGG + chr1_1:57634974-57634993 None:intergenic 40.0%
CCCTCTAGATTTCAAGAGAA+GGG - chr1_1:57634971-57634990 Msa0031070:intron 40.0%
CCTCTAGATTTCAAGAGAAG+GGG - chr1_1:57634972-57634991 Msa0031070:intron 40.0%
CACGGCAGACTCAAATTATT+GGG + chr1_1:57634999-57635018 None:intergenic 40.0%
ACACGGCAGACTCAAATTAT+TGG + chr1_1:57635000-57635019 None:intergenic 40.0%
AATAATTTGAGTCTGCCGTG+TGG - chr1_1:57634999-57635018 Msa0031070:intron 40.0%
ATAATTTGAGTCTGCCGTGT+GGG - chr1_1:57635000-57635019 Msa0031070:intron 40.0%
TCCACACAAGAATCGAAATC+GGG - chr1_1:57635047-57635066 Msa0031070:intron 40.0%
CGTTAAAAGTTGAACGGGAT+GGG + chr1_1:57635131-57635150 None:intergenic 40.0%
! CCATCCCGTTCAACTTTTAA+CGG - chr1_1:57635129-57635148 Msa0031070:intron 40.0%
! CATCCCGTTCAACTTTTAAC+GGG - chr1_1:57635130-57635149 Msa0031070:intron 40.0%
CATCCCGTTAAAAGTTGAAC+GGG + chr1_1:57635136-57635155 None:intergenic 40.0%
CCATCCCGTTAAAAGTTGAA+CGG + chr1_1:57635137-57635156 None:intergenic 40.0%
! CGTTCAACTTTTAACGGGAT+GGG - chr1_1:57635135-57635154 Msa0031070:intron 40.0%
CGGGTTTGATTGTGAAAATG+TGG + chr1_1:57635174-57635193 None:intergenic 40.0%
!! CAAATGGGTTGATTAGGTTC+GGG + chr1_1:57635193-57635212 None:intergenic 40.0%
!! CGTTCACAAATGGGTTGATT+AGG + chr1_1:57635199-57635218 None:intergenic 40.0%
AACCCATTTGTGAACGGTTT+GGG - chr1_1:57635203-57635222 Msa0031070:intron 40.0%
! ATGTAATTAGTGGACCTGGT+CGG - chr1_1:57635391-57635410 Msa0031070:intron 40.0%
ATACATGAAATTCAGGGGGT+CGG + chr1_1:57635461-57635480 None:intergenic 40.0%
TACTACAAATGTACGGTACC+AGG - chr1_1:57635570-57635589 Msa0031070:CDS 40.0%
GATGTCATCACAACGTATGT+AGG - chr1_1:57635639-57635658 Msa0031070:intron 40.0%
TCATGACGTTCCAACATCTA+TGG - chr1_1:57635671-57635690 Msa0031070:intron 40.0%
TGGCTATTAGCCATAGATGT+TGG + chr1_1:57635684-57635703 None:intergenic 40.0%
AAAACTAGGCTCCTCAGAAA+TGG + chr1_1:57635721-57635740 None:intergenic 40.0%
!!! GAGCCTAGTTTTGACAGTAT+TGG - chr1_1:57635729-57635748 Msa0031070:CDS 40.0%
!! CCTAGTTCTTCATTTTCGCT+TGG + chr1_1:57634237-57634256 None:intergenic 40.0%
CCAAGCGAAAATGAAGAACT+AGG - chr1_1:57634234-57634253 Msa0031070:CDS 40.0%
AGCGAAAATGAAGAACTAGG+TGG - chr1_1:57634237-57634256 Msa0031070:CDS 40.0%
GTCTAAGAGATCAATCTTGC+TGG + chr1_1:57634478-57634497 None:intergenic 40.0%
AAGGAGAAGCAATATCACCT+AGG + chr1_1:57634555-57634574 None:intergenic 40.0%
TAAGAGACATGTCCACTTGT+TGG + chr1_1:57634745-57634764 None:intergenic 40.0%
CATGTCTCTTAAGCTGACAA+TGG - chr1_1:57634754-57634773 Msa0031070:intron 40.0%
TGTCTCTTAAGCTGACAATG+GGG - chr1_1:57634756-57634775 Msa0031070:intron 40.0%
ACCCTCTAGATTTCAAGAGA+AGG - chr1_1:57634970-57634989 Msa0031070:intron 40.0%
CCCTTCTCTTGAAATCTAGA+GGG + chr1_1:57634974-57634993 None:intergenic 40.0%
CCCTCTAGATTTCAAGAGAA+GGG - chr1_1:57634971-57634990 Msa0031070:intron 40.0%
CCTCTAGATTTCAAGAGAAG+GGG - chr1_1:57634972-57634991 Msa0031070:intron 40.0%
CACGGCAGACTCAAATTATT+GGG + chr1_1:57634999-57635018 None:intergenic 40.0%
ACACGGCAGACTCAAATTAT+TGG + chr1_1:57635000-57635019 None:intergenic 40.0%
AATAATTTGAGTCTGCCGTG+TGG - chr1_1:57634999-57635018 Msa0031070:intron 40.0%
ATAATTTGAGTCTGCCGTGT+GGG - chr1_1:57635000-57635019 Msa0031070:intron 40.0%
TCCACACAAGAATCGAAATC+GGG - chr1_1:57635047-57635066 Msa0031070:intron 40.0%
CGTTAAAAGTTGAACGGGAT+GGG + chr1_1:57635131-57635150 None:intergenic 40.0%
! CCATCCCGTTCAACTTTTAA+CGG - chr1_1:57635129-57635148 Msa0031070:intron 40.0%
! CATCCCGTTCAACTTTTAAC+GGG - chr1_1:57635130-57635149 Msa0031070:intron 40.0%
CATCCCGTTAAAAGTTGAAC+GGG + chr1_1:57635136-57635155 None:intergenic 40.0%
CCATCCCGTTAAAAGTTGAA+CGG + chr1_1:57635137-57635156 None:intergenic 40.0%
! CGTTCAACTTTTAACGGGAT+GGG - chr1_1:57635135-57635154 Msa0031070:intron 40.0%
CGGGTTTGATTGTGAAAATG+TGG + chr1_1:57635174-57635193 None:intergenic 40.0%
!! CAAATGGGTTGATTAGGTTC+GGG + chr1_1:57635193-57635212 None:intergenic 40.0%
!! CGTTCACAAATGGGTTGATT+AGG + chr1_1:57635199-57635218 None:intergenic 40.0%
AACCCATTTGTGAACGGTTT+GGG - chr1_1:57635203-57635222 Msa0031070:intron 40.0%
! ATGTAATTAGTGGACCTGGT+CGG - chr1_1:57635391-57635410 Msa0031070:intron 40.0%
ATACATGAAATTCAGGGGGT+CGG + chr1_1:57635461-57635480 None:intergenic 40.0%
TACTACAAATGTACGGTACC+AGG - chr1_1:57635570-57635589 Msa0031070:CDS 40.0%
GATGTCATCACAACGTATGT+AGG - chr1_1:57635639-57635658 Msa0031070:intron 40.0%
TCATGACGTTCCAACATCTA+TGG - chr1_1:57635671-57635690 Msa0031070:intron 40.0%
TGGCTATTAGCCATAGATGT+TGG + chr1_1:57635684-57635703 None:intergenic 40.0%
AAAACTAGGCTCCTCAGAAA+TGG + chr1_1:57635721-57635740 None:intergenic 40.0%
!!! GAGCCTAGTTTTGACAGTAT+TGG - chr1_1:57635729-57635748 Msa0031070:CDS 40.0%
TTGTTGAACCTGGCCCAAAA+AGG - chr1_1:57634286-57634305 Msa0031070:CDS 45.0%
GCATAGGAAACCCTAATCCT+AGG - chr1_1:57634535-57634554 Msa0031070:intron 45.0%
CCCCTTCTCTTGAAATCTAG+AGG + chr1_1:57634975-57634994 None:intergenic 45.0%
ACCCGATTTCGATTCTTGTG+TGG + chr1_1:57635051-57635070 None:intergenic 45.0%
AAATCGGGTTCCCCTGAATA+GGG - chr1_1:57635062-57635081 Msa0031070:intron 45.0%
AACGGGATGGGTAACTAGTT+TGG + chr1_1:57635119-57635138 None:intergenic 45.0%
CCGTTAAAAGTTGAACGGGA+TGG + chr1_1:57635132-57635151 None:intergenic 45.0%
! CCGTTCAACTTTTAACGGGA+TGG - chr1_1:57635134-57635153 Msa0031070:intron 45.0%
CAACCCATTTGTGAACGGTT+TGG - chr1_1:57635202-57635221 Msa0031070:intron 45.0%
GACCCAAACCGTTCACAAAT+GGG + chr1_1:57635208-57635227 None:intergenic 45.0%
! GACCCACAAAGTTTGGTTTC+AGG + chr1_1:57635340-57635359 None:intergenic 45.0%
! GCTCATGTAATTAGTGGACC+TGG - chr1_1:57635387-57635406 Msa0031070:intron 45.0%
AAAGCGTGTAGAGAGAGCTT+GGG - chr1_1:57635605-57635624 Msa0031070:intron 45.0%
TTGTTGAACCTGGCCCAAAA+AGG - chr1_1:57634286-57634305 Msa0031070:CDS 45.0%
GCATAGGAAACCCTAATCCT+AGG - chr1_1:57634535-57634554 Msa0031070:intron 45.0%
CCCCTTCTCTTGAAATCTAG+AGG + chr1_1:57634975-57634994 None:intergenic 45.0%
ACCCGATTTCGATTCTTGTG+TGG + chr1_1:57635051-57635070 None:intergenic 45.0%
AAATCGGGTTCCCCTGAATA+GGG - chr1_1:57635062-57635081 Msa0031070:intron 45.0%
AACGGGATGGGTAACTAGTT+TGG + chr1_1:57635119-57635138 None:intergenic 45.0%
CCGTTAAAAGTTGAACGGGA+TGG + chr1_1:57635132-57635151 None:intergenic 45.0%
! CCGTTCAACTTTTAACGGGA+TGG - chr1_1:57635134-57635153 Msa0031070:intron 45.0%
CAACCCATTTGTGAACGGTT+TGG - chr1_1:57635202-57635221 Msa0031070:intron 45.0%
GACCCAAACCGTTCACAAAT+GGG + chr1_1:57635208-57635227 None:intergenic 45.0%
! GACCCACAAAGTTTGGTTTC+AGG + chr1_1:57635340-57635359 None:intergenic 45.0%
! GCTCATGTAATTAGTGGACC+TGG - chr1_1:57635387-57635406 Msa0031070:intron 45.0%
AAAGCGTGTAGAGAGAGCTT+GGG - chr1_1:57635605-57635624 Msa0031070:intron 45.0%
TTGAACCTGGCCCAAAAAGG+AGG - chr1_1:57634289-57634308 Msa0031070:CDS 50.0%
TACGGGCAACGAGTTTGCAT+AGG - chr1_1:57634519-57634538 Msa0031070:intron 50.0%
TTAAGCTGACAATGGGGTGC+AGG - chr1_1:57634762-57634781 Msa0031070:intron 50.0%
TAAGCTGACAATGGGGTGCA+GGG - chr1_1:57634763-57634782 Msa0031070:intron 50.0%
GCCATGCTATACTTCCCACA+CGG + chr1_1:57635017-57635036 None:intergenic 50.0%
GAAATCGGGTTCCCCTGAAT+AGG - chr1_1:57635061-57635080 Msa0031070:intron 50.0%
AATCGGGTTCCCCTGAATAG+GGG - chr1_1:57635063-57635082 Msa0031070:intron 50.0%
! AATAGGGGTGTACACGGGTT+GGG - chr1_1:57635078-57635097 Msa0031070:intron 50.0%
GGACCCAAACCGTTCACAAA+TGG + chr1_1:57635209-57635228 None:intergenic 50.0%
CCAAACTTTGTGGGTCGAGT+CGG - chr1_1:57635344-57635363 Msa0031070:intron 50.0%
CAAACTTTGTGGGTCGAGTC+GGG - chr1_1:57635345-57635364 Msa0031070:intron 50.0%
GTTTCAGTCACCAGGTTCGT+GGG - chr1_1:57635413-57635432 Msa0031070:intron 50.0%
CGCTTTCGAATGCTACAACC+TGG + chr1_1:57635591-57635610 None:intergenic 50.0%
! GAAAGCGTGTAGAGAGAGCT+TGG - chr1_1:57635604-57635623 Msa0031070:intron 50.0%
AGGCTCCTCAGAAATGGTGT+TGG + chr1_1:57635715-57635734 None:intergenic 50.0%
TTGAACCTGGCCCAAAAAGG+AGG - chr1_1:57634289-57634308 Msa0031070:CDS 50.0%
TACGGGCAACGAGTTTGCAT+AGG - chr1_1:57634519-57634538 Msa0031070:intron 50.0%
TTAAGCTGACAATGGGGTGC+AGG - chr1_1:57634762-57634781 Msa0031070:intron 50.0%
TAAGCTGACAATGGGGTGCA+GGG - chr1_1:57634763-57634782 Msa0031070:intron 50.0%
GCCATGCTATACTTCCCACA+CGG + chr1_1:57635017-57635036 None:intergenic 50.0%
GAAATCGGGTTCCCCTGAAT+AGG - chr1_1:57635061-57635080 Msa0031070:intron 50.0%
AATCGGGTTCCCCTGAATAG+GGG - chr1_1:57635063-57635082 Msa0031070:intron 50.0%
! AATAGGGGTGTACACGGGTT+GGG - chr1_1:57635078-57635097 Msa0031070:intron 50.0%
GGACCCAAACCGTTCACAAA+TGG + chr1_1:57635209-57635228 None:intergenic 50.0%
CCAAACTTTGTGGGTCGAGT+CGG - chr1_1:57635344-57635363 Msa0031070:intron 50.0%
CAAACTTTGTGGGTCGAGTC+GGG - chr1_1:57635345-57635364 Msa0031070:intron 50.0%
GTTTCAGTCACCAGGTTCGT+GGG - chr1_1:57635413-57635432 Msa0031070:intron 50.0%
CGCTTTCGAATGCTACAACC+TGG + chr1_1:57635591-57635610 None:intergenic 50.0%
! GAAAGCGTGTAGAGAGAGCT+TGG - chr1_1:57635604-57635623 Msa0031070:intron 50.0%
AGGCTCCTCAGAAATGGTGT+TGG + chr1_1:57635715-57635734 None:intergenic 50.0%
ACCTGGCCCAAAAAGGAGGT+AGG - chr1_1:57634293-57634312 Msa0031070:CDS 55.0%
!! ACCTACCTCCTTTTTGGGCC+AGG + chr1_1:57634297-57634316 None:intergenic 55.0%
AAGCTGACAATGGGGTGCAG+GGG - chr1_1:57634764-57634783 Msa0031070:intron 55.0%
! GCCGTGTGGGAAGTATAGCA+TGG - chr1_1:57635013-57635032 Msa0031070:intron 55.0%
CCGTGTACACCCCTATTCAG+GGG + chr1_1:57635075-57635094 None:intergenic 55.0%
! CCCCTGAATAGGGGTGTACA+CGG - chr1_1:57635072-57635091 Msa0031070:intron 55.0%
CCCGTGTACACCCCTATTCA+GGG + chr1_1:57635076-57635095 None:intergenic 55.0%
! CCCTGAATAGGGGTGTACAC+GGG - chr1_1:57635073-57635092 Msa0031070:intron 55.0%
ACCCGTGTACACCCCTATTC+AGG + chr1_1:57635077-57635096 None:intergenic 55.0%
! GAATAGGGGTGTACACGGGT+TGG - chr1_1:57635077-57635096 Msa0031070:intron 55.0%
!! TACACGGGTTGGGTTGGATC+AGG - chr1_1:57635088-57635107 Msa0031070:intron 55.0%
! TTGTGAACGGTTTGGGTCCG+CGG - chr1_1:57635210-57635229 Msa0031070:intron 55.0%
! CCGACTCGACCCACAAAGTT+TGG + chr1_1:57635347-57635366 None:intergenic 55.0%
GGTTTCAGTCACCAGGTTCG+TGG - chr1_1:57635412-57635431 Msa0031070:intron 55.0%
! GTCGGAGTGTTCATGGGTGT+GGG + chr1_1:57635443-57635462 None:intergenic 55.0%
ACCTGGCCCAAAAAGGAGGT+AGG - chr1_1:57634293-57634312 Msa0031070:CDS 55.0%
!! ACCTACCTCCTTTTTGGGCC+AGG + chr1_1:57634297-57634316 None:intergenic 55.0%
AAGCTGACAATGGGGTGCAG+GGG - chr1_1:57634764-57634783 Msa0031070:intron 55.0%
! GCCGTGTGGGAAGTATAGCA+TGG - chr1_1:57635013-57635032 Msa0031070:intron 55.0%
CCGTGTACACCCCTATTCAG+GGG + chr1_1:57635075-57635094 None:intergenic 55.0%
! CCCCTGAATAGGGGTGTACA+CGG - chr1_1:57635072-57635091 Msa0031070:intron 55.0%
CCCGTGTACACCCCTATTCA+GGG + chr1_1:57635076-57635095 None:intergenic 55.0%
! CCCTGAATAGGGGTGTACAC+GGG - chr1_1:57635073-57635092 Msa0031070:intron 55.0%
ACCCGTGTACACCCCTATTC+AGG + chr1_1:57635077-57635096 None:intergenic 55.0%
! GAATAGGGGTGTACACGGGT+TGG - chr1_1:57635077-57635096 Msa0031070:intron 55.0%
!! TACACGGGTTGGGTTGGATC+AGG - chr1_1:57635088-57635107 Msa0031070:intron 55.0%
! TTGTGAACGGTTTGGGTCCG+CGG - chr1_1:57635210-57635229 Msa0031070:intron 55.0%
! CCGACTCGACCCACAAAGTT+TGG + chr1_1:57635347-57635366 None:intergenic 55.0%
GGTTTCAGTCACCAGGTTCG+TGG - chr1_1:57635412-57635431 Msa0031070:intron 55.0%
! GTCGGAGTGTTCATGGGTGT+GGG + chr1_1:57635443-57635462 None:intergenic 55.0%
AGCTGACAATGGGGTGCAGG+GGG - chr1_1:57634765-57634784 Msa0031070:intron 60.0%
CCTGGTGACTGAAACCGACC+AGG + chr1_1:57635408-57635427 None:intergenic 60.0%
! CCTGGTCGGTTTCAGTCACC+AGG - chr1_1:57635405-57635424 Msa0031070:intron 60.0%
! TGTGGGTTGACCCACGAACC+TGG + chr1_1:57635426-57635445 None:intergenic 60.0%
! GGTCGGAGTGTTCATGGGTG+TGG + chr1_1:57635444-57635463 None:intergenic 60.0%
! CAGGGGGTCGGAGTGTTCAT+GGG + chr1_1:57635449-57635468 None:intergenic 60.0%
! TCAGGGGGTCGGAGTGTTCA+TGG + chr1_1:57635450-57635469 None:intergenic 60.0%
GCGTGTAGAGAGAGCTTGGG+TGG - chr1_1:57635608-57635627 Msa0031070:intron 60.0%
AGCTGACAATGGGGTGCAGG+GGG - chr1_1:57634765-57634784 Msa0031070:intron 60.0%
CCTGGTGACTGAAACCGACC+AGG + chr1_1:57635408-57635427 None:intergenic 60.0%
! CCTGGTCGGTTTCAGTCACC+AGG - chr1_1:57635405-57635424 Msa0031070:intron 60.0%
! TGTGGGTTGACCCACGAACC+TGG + chr1_1:57635426-57635445 None:intergenic 60.0%
! GGTCGGAGTGTTCATGGGTG+TGG + chr1_1:57635444-57635463 None:intergenic 60.0%
! CAGGGGGTCGGAGTGTTCAT+GGG + chr1_1:57635449-57635468 None:intergenic 60.0%
! TCAGGGGGTCGGAGTGTTCA+TGG + chr1_1:57635450-57635469 None:intergenic 60.0%
GCGTGTAGAGAGAGCTTGGG+TGG - chr1_1:57635608-57635627 Msa0031070:intron 60.0%
!! GGGGTGTACACGGGTTGGGT+TGG - chr1_1:57635082-57635101 Msa0031070:intron 65.0%
!! GGGGTGTACACGGGTTGGGT+TGG - chr1_1:57635082-57635101 Msa0031070:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 57634228 57635773 57634228 ID=Msa0031070;Name=Msa0031070
chr1_1 mRNA 57634228 57635773 57634228 ID=Msa0031070-mRNA-1;Parent=Msa0031070;Name=Msa0031070-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|3|0|150
chr1_1 exon 57635691 57635773 57635691 ID=Msa0031070-mRNA-1:exon:17451;Parent=Msa0031070-mRNA-1
chr1_1 exon 57635445 57635606 57635445 ID=Msa0031070-mRNA-1:exon:17450;Parent=Msa0031070-mRNA-1
chr1_1 exon 57634228 57634435 57634228 ID=Msa0031070-mRNA-1:exon:17449;Parent=Msa0031070-mRNA-1
chr1_1 CDS 57635691 57635773 57635691 ID=Msa0031070-mRNA-1:cds;Parent=Msa0031070-mRNA-1
chr1_1 CDS 57635445 57635606 57635445 ID=Msa0031070-mRNA-1:cds;Parent=Msa0031070-mRNA-1
chr1_1 CDS 57634228 57634435 57634228 ID=Msa0031070-mRNA-1:cds;Parent=Msa0031070-mRNA-1
Gene Sequence

>Msa0031070

ATGGAACCAAGCGAAAATGAAGAACTAGGTGGTGATGAAATTGAACTTGATCGAAAAATTGTTGAACCTGGCCCAAAAAGGAGAAATGCAGAGATCGCGATCTTAAATCAAATAGGTTCTTCATACAGGTCTCCCAGAGAGCCTAGAATAAATATAATAACAACCAGCAAGATTGATCTCTTAGACGATGGGTATAATTGGAGAAAATACGGGCAACGAGTTTGCATAGGAAACCCTAATCCTAGGAGCTACTACAAATGTACGGTACCAGGTTGTAGCATTCGAAAGCGTGTAGAGAGAGCTTGGGTGGATCCTAAAGATGTCATCACAACGTATGTAGGAAGACATAATCATGACGTTCCAACATCTATGGCTAATAGCCACACTATTTCCAACACCATTTCTGAGGAGCCTAGTTTTGACAGTATTGGTAATGATGGCGACAATATTTAA
Protein sequence

>Msa0031070

MEPSENEELGGDEIELDRKIVEPGPKRRNAEIAILNQIGSSYRSPREPRINIITTSKIDLLDDGYNWRKYGQRVCIGNPNPRSYYKCTVPGCSIRKRVERAWVDPKDVITTYVGRHNHDVPTSMANSHTISNTISEEPSFDSIGNDGDNI*