AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0031110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031110 MtrunA17_Chr5g0418191 58.278 151 53 1 4 144 262 412 3.33e-55 179
Msa0031110 MtrunA17_Chr5g0418191 55.000 60 26 1 62 121 151 209 3.36e-16 74.3
Msa0031110 MtrunA17_Chr1g0188971 87.805 82 10 0 1 82 1 82 2.66e-48 150
Msa0031110 MtrunA17_Chr1g0188941 76.042 96 23 0 29 124 18 113 5.12e-48 150
Msa0031110 MtrunA17_Chr4g0042831 55.814 129 53 2 4 132 224 348 7.62e-44 148
Msa0031110 MtrunA17_Chr4g0042831 46.914 81 42 1 42 121 124 204 7.80e-16 73.2
Msa0031110 MtrunA17_Chr7g0218081 53.333 135 62 1 4 138 353 486 1.53e-42 147
Msa0031110 MtrunA17_Chr7g0218081 56.452 62 22 2 62 121 228 286 3.41e-15 71.6
Msa0031110 MtrunA17_Chr3g0101131 54.167 120 47 2 12 131 373 484 3.61e-36 130
Msa0031110 MtrunA17_Chr3g0101131 45.205 73 39 1 49 121 230 301 1.26e-14 70.1
Msa0031110 MtrunA17_Chr1g0188961 84.058 69 7 1 82 150 3 67 4.29e-36 119
Msa0031110 MtrunA17_Chr3g0079691 52.846 123 47 1 11 133 455 566 4.88e-36 130
Msa0031110 MtrunA17_Chr3g0079691 51.667 60 28 1 62 121 280 338 1.82e-13 66.6
Msa0031110 MtrunA17_Chr5g0445311 65.882 85 29 0 47 131 349 433 7.52e-35 127
Msa0031110 MtrunA17_Chr5g0445311 50.000 60 29 1 62 121 200 258 2.08e-13 66.2
Msa0031110 MtrunA17_Chr7g0243891 57.426 101 43 0 23 123 335 435 7.29e-34 124
Msa0031110 MtrunA17_Chr7g0243891 56.452 62 26 1 62 123 216 276 1.98e-17 77.8
Msa0031110 MtrunA17_Chr4g0004911 68.354 79 25 0 43 121 317 395 1.04e-33 123
Msa0031110 MtrunA17_Chr4g0004911 47.561 82 41 1 40 121 164 243 2.77e-17 77.4
Msa0031110 MtrunA17_Chr3g0106491 64.706 85 30 0 38 122 341 425 9.46e-33 120
Msa0031110 MtrunA17_Chr3g0106491 47.436 78 36 2 46 123 186 258 4.95e-18 79.7
Msa0031110 MtrunA17_Chr5g0432161 53.600 125 48 4 10 130 372 490 9.70e-33 121
Msa0031110 MtrunA17_Chr5g0432161 55.000 60 26 1 62 121 244 302 9.53e-17 75.9
Msa0031110 MtrunA17_Chr7g0249311 57.609 92 39 0 43 134 373 464 4.34e-31 117
Msa0031110 MtrunA17_Chr7g0249311 51.613 62 29 1 62 123 179 239 4.15e-14 68.6
Msa0031110 MtrunA17_Chr7g0249301 60.494 81 32 0 43 123 273 353 1.04e-29 110
Msa0031110 MtrunA17_Chr7g0249301 51.562 64 28 2 61 123 61 122 2.26e-14 68.9
Msa0031110 MtrunA17_Chr4g0051881 51.546 97 43 1 48 140 164 260 6.60e-29 108
Msa0031110 MtrunA17_Chr1g0194481 53.947 76 35 0 47 122 143 218 6.37e-27 102
Msa0031110 MtrunA17_Chr5g0443131 53.247 77 36 0 48 124 143 219 2.81e-26 100
Msa0031110 MtrunA17_Chr3g0129361 51.765 85 41 0 47 131 129 213 1.24e-24 94.4
Msa0031110 MtrunA17_Chr7g0263531 48.837 86 44 0 36 121 335 420 2.24e-24 97.1
Msa0031110 MtrunA17_Chr7g0263531 44.318 88 47 2 63 149 190 276 4.45e-16 73.9
Msa0031110 MtrunA17_Chr7g0270191 50.633 79 39 0 43 121 126 204 3.01e-24 95.1
Msa0031110 MtrunA17_Chr2g0294231 51.948 77 37 0 47 123 188 264 4.56e-24 95.9
Msa0031110 MtrunA17_Chr5g0418781 46.939 98 39 2 47 140 109 197 1.52e-23 92.8
Msa0031110 MtrunA17_Chr8g0335811 55.263 76 34 0 43 118 135 210 6.09e-23 90.1
Msa0031110 MtrunA17_Chr8g0383351 49.438 89 44 1 47 134 144 232 7.06e-23 90.1
Msa0031110 MtrunA17_Chr1g0150801 49.351 77 39 0 42 118 82 158 1.14e-22 87.8
Msa0031110 MtrunA17_Chr5g0447701 50.000 76 38 0 47 122 237 312 8.47e-22 89.7
Msa0031110 MtrunA17_Chr8g0383251 49.315 73 37 0 49 121 95 167 1.25e-21 85.9
Msa0031110 MtrunA17_Chr3g0129321 38.793 116 64 2 6 121 69 177 3.49e-21 85.1
Msa0031110 MtrunA17_Chr4g0074001 42.453 106 58 3 17 121 315 418 4.66e-21 88.2
Msa0031110 MtrunA17_Chr7g0270831 48.235 85 42 2 49 131 203 287 6.25e-21 87.8
Msa0031110 MtrunA17_Chr7g0224801 48.101 79 40 1 54 131 85 163 7.89e-21 83.6
Msa0031110 MtrunA17_Chr4g0051181 39.316 117 62 4 7 121 194 303 1.91e-20 86.7
Msa0031110 MtrunA17_Chr4g0068541 47.368 76 40 0 49 124 195 270 5.03e-20 85.1
Msa0031110 MtrunA17_Chr8g0386241 50.000 70 35 0 54 123 95 164 1.74e-19 80.1
Msa0031110 MtrunA17_Chr4g0060271 54.839 62 27 1 61 121 254 315 3.06e-19 83.2
Msa0031110 MtrunA17_Chr4g0025051 35.211 142 82 4 12 147 285 422 6.16e-19 82.4
Msa0031110 MtrunA17_Chr7g0216891 45.977 87 43 3 49 131 204 290 6.32e-19 82.4
Msa0031110 MtrunA17_Chr2g0333851 50.000 64 31 1 60 122 167 230 6.87e-19 80.9
Msa0031110 MtrunA17_Chr2g0302391 45.946 74 39 1 49 121 198 271 1.39e-18 80.9
Msa0031110 MtrunA17_Chr1g0147881 49.351 77 38 1 49 124 249 325 1.46e-18 80.5
Msa0031110 MtrunA17_Chr5g0401821 46.835 79 41 1 49 126 186 264 1.57e-18 79.3
Msa0031110 MtrunA17_Chr3g0136961 52.542 59 27 1 61 118 137 195 3.26e-18 79.0
Msa0031110 MtrunA17_Chr5g0432071 54.839 62 27 1 62 123 104 164 3.77e-18 77.4
Msa0031110 MtrunA17_Chr4g0025061 44.444 81 44 1 44 123 342 422 4.16e-18 79.7
Msa0031110 MtrunA17_Chr1g0189391 54.930 71 31 1 49 118 84 154 8.74e-18 78.2
Msa0031110 MtrunA17_Chr7g0238921 57.627 59 25 0 60 118 122 180 1.14e-17 77.8
Msa0031110 MtrunA17_Chr2g0288871 40.404 99 53 2 29 121 267 365 1.33e-17 78.6
Msa0031110 MtrunA17_Chr3g0099641 34.615 130 78 3 13 135 197 326 1.94e-17 77.8
Msa0031110 MtrunA17_Chr5g0447711 37.805 82 51 0 47 128 215 296 3.79e-17 76.3
Msa0031110 MtrunA17_Chr4g0053281 45.570 79 42 1 49 126 253 331 3.84e-17 76.6
Msa0031110 MtrunA17_Chr4g0075201 44.737 76 41 1 49 123 254 329 4.06e-17 77.0
Msa0031110 MtrunA17_Chr1g0150281 49.123 57 28 1 63 118 141 197 9.60e-17 74.7
Msa0031110 MtrunA17_Chr7g0270051 43.243 74 41 1 60 132 51 124 1.24e-16 74.3
Msa0031110 MtrunA17_Chr1g0184691 45.679 81 42 2 49 127 280 360 1.26e-16 75.1
Msa0031110 MtrunA17_Chr2g0319961 38.655 119 52 4 17 128 41 145 1.27e-16 74.3
Msa0031110 MtrunA17_Chr4g0001361 47.619 63 32 1 60 121 160 222 1.33e-16 74.7
Msa0031110 MtrunA17_Chr6g0485431 51.562 64 30 1 59 121 151 214 1.35e-16 75.1
Msa0031110 MtrunA17_Chr7g0248721 49.296 71 35 1 48 118 127 196 1.39e-16 73.6
Msa0031110 MtrunA17_Chr2g0322391 44.737 76 41 1 49 123 336 411 1.68e-16 75.5
Msa0031110 MtrunA17_Chr4g0071521 46.479 71 37 1 49 118 232 302 9.28e-16 72.4
Msa0031110 MtrunA17_Chr8g0379461 51.613 62 29 1 63 123 77 138 1.76e-15 70.9
Msa0031110 MtrunA17_Chr1g0150271 42.857 63 35 1 60 121 99 161 2.71e-15 70.5
Msa0031110 MtrunA17_Chr8g0387501 44.872 78 39 2 61 134 128 205 3.81e-15 70.5
Msa0031110 MtrunA17_Chr2g0293481 41.975 81 43 2 63 142 268 345 7.97e-15 70.5
Msa0031110 MtrunA17_Chr2g0284321 44.595 74 40 1 63 135 36 109 2.10e-14 67.4
Msa0031110 MtrunA17_Chr7g0228941 42.308 78 44 1 43 119 33 110 2.88e-14 65.1
Msa0031110 MtrunA17_Chr8g0348311 48.611 72 33 2 60 127 153 224 2.98e-14 68.6
Msa0031110 MtrunA17_Chr3g0139021 44.595 74 40 1 47 119 299 372 3.31e-14 68.6
Msa0031110 MtrunA17_Chr7g0248691 48.611 72 33 2 60 127 152 223 4.67e-14 67.8
Msa0031110 MtrunA17_Chr2g0289181 47.826 69 35 1 59 126 11 79 7.72e-14 66.2
Msa0031110 MtrunA17_Chr1g0202461 46.154 65 34 1 59 122 258 322 4.45e-13 65.5
Msa0031110 MtrunA17_Chr3g0126391 50.847 59 26 1 61 116 132 190 5.39e-13 65.1
Msa0031110 MtrunA17_Chr4g0024391 31.707 123 81 2 12 133 179 299 2.32e-12 63.2
Msa0031110 MtrunA17_Chr8g0387981 48.276 58 27 1 62 116 132 189 2.31e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031110 AT2G03340.1 58.462 130 53 1 2 130 354 483 2.35e-44 152
Msa0031110 AT2G03340.1 50.746 67 32 1 62 128 250 315 1.23e-15 73.2
Msa0031110 AT1G13960.2 59.836 122 47 2 2 121 194 315 5.71e-44 148
Msa0031110 AT1G13960.2 56.667 60 25 1 62 121 76 134 3.13e-17 77.4
Msa0031110 AT1G13960.1 59.836 122 47 2 2 121 347 468 4.28e-43 149
Msa0031110 AT1G13960.1 56.667 60 25 1 62 121 229 287 2.35e-17 78.2
Msa0031110 AT5G56270.1 62.245 98 36 1 26 123 452 548 3.83e-36 131
Msa0031110 AT5G56270.1 53.333 60 27 1 62 121 273 331 1.14e-14 70.5
Msa0031110 AT4G26640.5 58.491 106 42 1 22 127 167 270 2.81e-35 126
Msa0031110 AT4G26640.5 51.613 62 29 1 60 121 33 93 2.76e-14 68.9
Msa0031110 AT4G26640.6 58.491 106 42 1 22 127 167 270 2.81e-35 126
Msa0031110 AT4G26640.6 51.613 62 29 1 60 121 33 93 2.76e-14 68.9
Msa0031110 AT4G26640.4 58.491 106 42 1 22 127 167 270 2.81e-35 126
Msa0031110 AT4G26640.4 51.613 62 29 1 60 121 33 93 2.76e-14 68.9
Msa0031110 AT4G26640.3 58.491 106 42 1 22 127 167 270 2.81e-35 126
Msa0031110 AT4G26640.3 51.613 62 29 1 60 121 33 93 2.76e-14 68.9
Msa0031110 AT5G07100.2 69.737 76 23 0 47 122 126 201 5.71e-35 121
Msa0031110 AT5G07100.2 50.000 70 35 0 62 131 24 93 1.81e-18 78.6
Msa0031110 AT5G07100.4 69.737 76 23 0 47 122 126 201 5.71e-35 121
Msa0031110 AT5G07100.4 50.000 70 35 0 62 131 24 93 1.81e-18 78.6
Msa0031110 AT5G07100.5 69.737 76 23 0 47 122 126 201 5.71e-35 121
Msa0031110 AT5G07100.5 50.000 70 35 0 62 131 24 93 1.81e-18 78.6
Msa0031110 AT5G07100.3 69.737 76 23 0 47 122 126 201 5.71e-35 121
Msa0031110 AT5G07100.3 50.000 70 35 0 62 131 24 93 1.81e-18 78.6
Msa0031110 AT4G26440.1 53.913 115 52 1 14 128 325 438 6.46e-35 127
Msa0031110 AT4G26440.1 51.667 60 28 1 62 121 178 236 3.30e-14 68.9
Msa0031110 AT4G26640.1 58.491 106 42 1 22 127 271 374 8.75e-35 126
Msa0031110 AT4G26640.1 51.613 62 29 1 60 121 137 197 2.36e-14 69.3
Msa0031110 AT3G01080.1 59.783 92 37 0 30 121 274 365 1.04e-34 125
Msa0031110 AT3G01080.1 51.667 60 28 1 62 121 167 225 7.81e-13 65.1
Msa0031110 AT4G26640.7 58.491 106 42 1 22 127 303 406 1.22e-34 126
Msa0031110 AT4G26640.7 51.613 62 29 1 60 121 169 229 2.38e-14 69.3
Msa0031110 AT4G26640.2 58.491 106 42 1 22 127 343 446 1.44e-34 126
Msa0031110 AT4G26640.2 51.613 62 29 1 60 121 209 269 2.15e-14 69.7
Msa0031110 AT3G01080.2 59.783 92 37 0 30 121 312 403 1.80e-34 125
Msa0031110 AT3G01080.2 51.667 60 28 1 62 121 205 263 8.36e-13 65.1
Msa0031110 AT5G07100.1 69.737 76 23 0 47 122 219 294 3.43e-34 121
Msa0031110 AT5G07100.1 50.000 70 35 0 62 131 117 186 4.17e-18 79.3
Msa0031110 AT2G38470.1 48.872 133 59 1 7 130 298 430 7.55e-34 124
Msa0031110 AT2G38470.1 55.000 60 26 1 62 121 184 242 2.04e-16 75.5
Msa0031110 AT2G30250.1 58.025 81 34 0 47 127 313 393 1.66e-29 110
Msa0031110 AT2G30250.1 50.000 60 29 1 62 121 166 224 1.39e-11 61.6
Msa0031110 AT4G18170.1 42.735 117 53 2 8 124 132 234 5.11e-29 108
Msa0031110 AT1G29860.1 53.846 78 36 0 47 124 121 198 5.38e-27 102
Msa0031110 AT5G46350.1 53.333 75 35 0 48 122 169 243 3.00e-26 101
Msa0031110 AT3G01970.1 48.913 92 47 0 49 140 52 143 4.84e-26 96.7
Msa0031110 AT2G47260.1 52.000 75 36 0 47 121 159 233 6.25e-25 97.8
Msa0031110 AT5G26170.1 55.714 70 31 0 49 118 100 169 9.41e-25 94.0
Msa0031110 AT2G04880.2 44.340 106 57 1 23 128 246 349 1.00e-24 98.6
Msa0031110 AT2G04880.2 38.938 113 59 3 13 125 71 173 4.53e-17 77.4
Msa0031110 AT2G04880.1 40.800 125 70 2 4 128 253 373 1.10e-24 99.0
Msa0031110 AT2G04880.1 38.938 113 59 3 13 125 71 173 5.65e-17 77.0
Msa0031110 AT5G13080.1 45.652 92 50 0 49 140 54 145 1.72e-24 92.4
Msa0031110 AT5G49520.1 54.545 77 35 0 47 123 206 282 2.17e-24 97.4
Msa0031110 AT5G41570.1 44.554 101 56 0 43 143 79 179 1.07e-23 91.3
Msa0031110 AT3G62340.1 52.703 74 35 0 48 121 104 177 3.69e-23 92.4
Msa0031110 AT4G39410.1 50.549 91 40 1 43 128 204 294 4.52e-23 92.4
Msa0031110 AT2G44745.1 55.263 76 34 0 43 118 126 201 4.87e-23 90.5
Msa0031110 AT5G64810.1 54.054 74 34 0 46 119 94 167 6.60e-23 89.7
Msa0031110 AT1G69310.4 54.167 72 33 0 47 118 132 203 2.23e-22 90.5
Msa0031110 AT1G69310.2 54.167 72 33 0 47 118 132 203 2.23e-22 90.5
Msa0031110 AT1G69310.1 54.167 72 33 0 47 118 132 203 2.23e-22 90.5
Msa0031110 AT1G68150.1 39.024 123 69 3 15 131 186 308 4.69e-22 90.5
Msa0031110 AT1G64000.1 50.000 80 40 0 39 118 91 170 6.10e-22 87.4
Msa0031110 AT4G30935.1 42.105 114 56 3 16 121 279 390 3.22e-21 89.0
Msa0031110 AT2G37260.2 55.556 72 32 0 59 130 264 335 9.71e-21 86.7
Msa0031110 AT2G37260.2 53.333 60 27 1 63 122 84 142 8.90e-15 70.5
Msa0031110 AT2G37260.3 55.556 72 32 0 59 130 266 337 1.06e-20 86.7
Msa0031110 AT2G37260.3 53.333 60 27 1 63 122 86 144 9.43e-15 70.5
Msa0031110 AT2G37260.1 55.556 72 32 0 59 130 346 417 1.31e-20 87.0
Msa0031110 AT2G37260.1 53.333 60 27 1 63 122 166 224 9.87e-15 70.5
Msa0031110 AT1G55600.1 51.136 88 42 1 34 121 280 366 1.55e-20 87.0
Msa0031110 AT4G04450.2 46.835 79 41 1 49 126 185 263 2.11e-20 86.7
Msa0031110 AT2G21900.1 42.708 96 51 2 31 122 74 169 2.59e-20 83.2
Msa0031110 AT4G04450.1 46.835 79 41 1 49 126 279 357 3.83e-20 86.3
Msa0031110 AT5G15130.1 44.211 95 44 3 61 146 226 320 1.16e-19 84.7
Msa0031110 AT5G15130.2 44.211 95 44 3 61 146 184 278 1.43e-19 84.3
Msa0031110 AT1G62300.1 46.053 76 40 1 47 121 297 372 2.56e-19 83.6
Msa0031110 AT2G46130.1 49.296 71 36 0 48 118 16 86 8.73e-19 76.6
Msa0031110 AT1G80840.1 42.857 77 43 1 60 135 144 220 8.88e-19 80.9
Msa0031110 AT2G25000.2 46.774 62 32 1 61 121 102 163 1.84e-18 79.0
Msa0031110 AT2G25000.4 46.774 62 32 1 61 121 102 163 1.84e-18 79.0
Msa0031110 AT2G25000.3 46.774 62 32 1 61 121 124 185 3.47e-18 78.6
Msa0031110 AT3G58710.2 40.157 127 55 5 17 134 31 145 4.06e-18 78.6
Msa0031110 AT2G25000.1 46.774 62 32 1 61 121 145 206 5.05e-18 78.6
Msa0031110 AT3G58710.1 39.844 128 55 5 17 134 31 146 5.44e-18 78.6
Msa0031110 AT4G31800.2 41.772 79 38 2 61 131 110 188 8.48e-18 77.4
Msa0031110 AT4G31800.1 41.772 79 38 2 61 131 175 253 1.18e-17 78.2
Msa0031110 AT1G18860.1 43.243 74 41 1 49 121 226 299 1.45e-17 78.6
Msa0031110 AT1G69310.3 50.000 72 32 1 47 118 132 199 2.35e-17 77.0
Msa0031110 AT4G31550.1 50.000 72 35 1 49 119 233 304 3.77e-17 76.6
Msa0031110 AT4G31550.2 50.000 72 35 1 49 119 232 303 3.86e-17 76.6
Msa0031110 AT4G22070.4 47.297 74 38 1 49 121 284 357 4.29e-17 77.4
Msa0031110 AT4G22070.3 47.297 74 38 1 49 121 284 357 4.29e-17 77.4
Msa0031110 AT4G22070.2 47.297 74 38 1 49 121 284 357 4.29e-17 77.4
Msa0031110 AT4G22070.1 47.297 74 38 1 49 121 284 357 4.29e-17 77.4
Msa0031110 AT4G24240.1 46.575 73 38 1 49 120 268 340 8.69e-17 75.9
Msa0031110 AT2G23320.1 49.315 73 36 1 49 120 227 299 1.20e-16 75.5
Msa0031110 AT5G43290.1 44.706 85 35 1 46 118 86 170 3.78e-16 73.6
Msa0031110 AT4G23550.1 47.945 73 34 2 59 127 137 209 4.76e-16 73.6
Msa0031110 AT4G01720.1 45.946 74 39 1 49 121 226 299 6.76e-16 73.9
Msa0031110 AT2G24570.1 46.667 75 39 1 49 122 230 304 1.63e-15 72.4
Msa0031110 AT4G12020.11 48.780 82 41 1 2 82 580 661 1.65e-15 72.8
Msa0031110 AT4G12020.11 40.000 85 42 2 61 137 467 550 5.36e-12 62.8
Msa0031110 AT4G12020.6 48.780 82 41 1 2 82 580 661 1.84e-15 72.8
Msa0031110 AT4G12020.6 35.714 98 54 2 61 150 467 563 3.99e-12 63.2
Msa0031110 AT4G12020.8 48.780 82 41 1 2 82 580 661 1.84e-15 72.8
Msa0031110 AT4G12020.8 35.714 98 54 2 61 150 467 563 3.99e-12 63.2
Msa0031110 AT4G12020.7 48.780 82 41 1 2 82 580 661 1.95e-15 72.8
Msa0031110 AT4G12020.7 35.714 98 54 2 61 150 467 563 3.69e-12 63.5
Msa0031110 AT4G12020.3 48.780 82 41 1 2 82 580 661 2.03e-15 72.8
Msa0031110 AT4G12020.3 40.000 85 42 2 61 137 467 550 3.85e-12 63.2
Msa0031110 AT4G12020.1 48.780 82 41 1 2 82 580 661 2.06e-15 72.8
Msa0031110 AT4G12020.1 35.714 98 54 2 61 150 467 563 3.84e-12 63.2
Msa0031110 AT4G12020.9 48.780 82 41 1 2 82 580 661 2.06e-15 72.8
Msa0031110 AT4G12020.9 35.714 98 54 2 61 150 467 563 3.84e-12 63.2
Msa0031110 AT4G12020.4 48.780 82 41 1 2 82 580 661 2.09e-15 72.8
Msa0031110 AT4G12020.4 35.714 98 54 2 61 150 467 563 3.89e-12 63.2
Msa0031110 AT4G12020.2 48.780 82 41 1 2 82 580 661 2.13e-15 72.8
Msa0031110 AT4G12020.2 35.714 98 54 2 61 150 467 563 4.00e-12 63.2
Msa0031110 AT4G12020.10 48.780 82 41 1 2 82 580 661 2.17e-15 72.8
Msa0031110 AT4G12020.10 40.000 85 42 2 61 137 467 550 3.85e-12 63.2
Msa0031110 AT4G12020.5 48.780 82 41 1 2 82 513 594 2.36e-15 72.4
Msa0031110 AT4G12020.5 40.000 85 42 2 61 137 400 483 4.19e-12 63.2
Msa0031110 AT4G01250.1 44.444 81 41 2 60 139 126 203 2.42e-15 71.6
Msa0031110 AT2G30590.1 47.887 71 36 1 49 118 300 370 2.47e-15 72.0
Msa0031110 AT5G28650.1 43.902 82 45 1 49 129 249 330 2.49e-15 71.6
Msa0031110 AT3G04670.1 43.902 82 45 1 49 129 249 330 3.75e-15 71.2
Msa0031110 AT2G34830.1 50.820 61 29 1 63 122 216 276 1.49e-14 70.1
Msa0031110 AT2G34830.2 50.820 61 29 1 63 122 225 285 1.50e-14 70.1
Msa0031110 AT5G52830.1 45.000 80 40 2 52 127 155 234 2.62e-14 68.9
Msa0031110 AT5G45050.2 50.820 61 29 1 63 122 1153 1213 5.93e-14 68.6
Msa0031110 AT5G45050.4 50.820 61 29 1 63 122 1042 1102 6.00e-14 68.6
Msa0031110 AT5G45050.1 50.820 61 29 1 63 122 1181 1241 6.05e-14 68.6
Msa0031110 AT2G46130.2 45.070 71 35 1 48 118 16 82 9.22e-14 63.5
Msa0031110 AT1G29280.1 48.333 60 30 1 63 121 75 134 1.16e-13 66.6
Msa0031110 AT1G30650.1 50.000 60 29 1 63 121 218 277 1.33e-13 67.4
Msa0031110 AT1G69810.1 41.333 75 40 3 61 133 202 274 3.89e-13 65.9
Msa0031110 AT1G69810.2 41.333 75 40 3 61 133 144 216 5.92e-13 65.1
Msa0031110 AT3G01080.3 51.667 60 28 1 62 121 205 263 6.36e-13 65.1
Msa0031110 AT3G56400.1 38.158 76 40 2 60 128 118 193 2.76e-12 63.2
Msa0031110 AT5G45260.1 33.333 93 55 3 35 122 1181 1271 2.34e-11 60.8
Msa0031110 AT2G46400.1 30.189 106 61 2 14 116 66 161 6.33e-11 59.3

Find 34 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAAAACCTACCTCCTTT+TGG 0.210912 1_1:+57688743 None:intergenic
ATGTTGGAACGTCATGATTA+TGG 0.288202 1_1:+57687380 None:intergenic
GTTGTTATTATATTTATTCT+AGG 0.291981 1_1:+57688591 None:intergenic
AAGCAATATCACCTAGGATT+AGG 0.314028 1_1:+57688498 None:intergenic
TCTTAGACGATGGATATAAT+TGG 0.347263 1_1:-57688554 Msa0031110:CDS
AGCAATATCACCTAGGATTA+GGG 0.361293 1_1:+57688499 None:intergenic
TCATGACGTTCCAACATCTA+TGG 0.377282 1_1:-57687374 Msa0031110:CDS
GGATATAATTGGAGAAAATA+CGG 0.397885 1_1:-57688543 Msa0031110:CDS
TTTGACAATATTGGTAATGA+TGG 0.414983 1_1:-57687307 Msa0031110:CDS
ATCAAATAGGTTCTTCATAT+AGG 0.420582 1_1:-57688626 Msa0031110:CDS
TACGTTGTGATGACATCTTT+AGG 0.421165 1_1:+57687412 None:intergenic
GTCTAAGAGATCAATCTTGC+TGG 0.427915 1_1:+57688569 None:intergenic
GATGTCATCACAACGTATAT+AGG 0.437134 1_1:-57687406 Msa0031110:CDS
ATCGCGATCTTAAATCAAAT+AGG 0.461929 1_1:-57688639 Msa0031110:CDS
AAAACTAGGCTCCTCAGAAA+TGG 0.462177 1_1:+57687327 None:intergenic
GAAAGCGTGTAGAGAGAGCT+TGG 0.508767 1_1:-57687441 Msa0031110:CDS
GCATAGGAAACCCTAATCCT+AGG 0.512114 1_1:-57688509 Msa0031110:intron
TACTACAAATGTACGGTACC+AGG 0.527593 1_1:-57687475 Msa0031110:CDS
ATATTTATTCTAGGCTCTGT+GGG 0.530035 1_1:+57688600 None:intergenic
GATATAATTGGAGAAAATAC+GGG 0.530666 1_1:-57688542 Msa0031110:CDS
TGGCTATTAGCCATAGATGT+TGG 0.542428 1_1:+57687364 None:intergenic
AAGATTGATCTCTTAGACGA+TGG 0.544254 1_1:-57688564 Msa0031110:CDS
TATATTTATTCTAGGCTCTG+TGG 0.546550 1_1:+57688599 None:intergenic
CGCTTTCGAATGCTACAACC+TGG 0.550383 1_1:+57687457 None:intergenic
CCAAGCGAAAATGAAGAACT+AGG 0.556758 1_1:-57688810 Msa0031110:CDS
AGGCTCCTCAGAAATGGTGT+TGG 0.564390 1_1:+57687333 None:intergenic
AAAGCGTGTAGAGAGAGCTT+GGG 0.573571 1_1:-57687440 Msa0031110:CDS
TATTTCCAACACCATTTCTG+AGG 0.589759 1_1:-57687338 Msa0031110:CDS
GCGTGTAGAGAGAGCTTGGG+TGG 0.595065 1_1:-57687437 Msa0031110:CDS
TTACCAATATTGTCAAAACT+AGG 0.612412 1_1:+57687313 None:intergenic
TAGGAGCTACTACAAATGTA+CGG 0.634951 1_1:-57687482 Msa0031110:CDS
TACGGGCAACGAGTTTGCAT+AGG 0.651147 1_1:-57688525 Msa0031110:CDS
AAATGGTGTTGGAAATAGTG+TGG 0.703460 1_1:+57687344 None:intergenic
AGCGAAAATGAAGAACTAGG+TGG 0.762878 1_1:-57688807 Msa0031110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTGTTATTATATTTATTCT+AGG + chr1_1:57687522-57687541 None:intergenic 15.0%
!! AAACTATTGTAATTGAAATT+AGG - chr1_1:57688360-57688379 Msa0031110:intron 15.0%
!! AACTATTGTAATTGAAATTA+GGG - chr1_1:57688361-57688380 Msa0031110:intron 15.0%
!!! GTTGTTATTATATTTATTCT+AGG + chr1_1:57687522-57687541 None:intergenic 15.0%
!! AAACTATTGTAATTGAAATT+AGG - chr1_1:57688360-57688379 Msa0031110:intron 15.0%
!! AACTATTGTAATTGAAATTA+GGG - chr1_1:57688361-57688380 Msa0031110:intron 15.0%
!! TAGATAAAATTAAAGTGTGA+AGG + chr1_1:57687640-57687659 None:intergenic 20.0%
!!! GAATAATTGAACTCATTTTT+TGG + chr1_1:57687713-57687732 None:intergenic 20.0%
!! TAAGCTGAAAAATATGTAAA+AGG - chr1_1:57687934-57687953 Msa0031110:intron 20.0%
!! TTTCGATAGAAAAAAATATG+TGG - chr1_1:57688326-57688345 Msa0031110:intron 20.0%
!! ATAGAAAAAAATATGTGGTT+TGG - chr1_1:57688331-57688350 Msa0031110:intron 20.0%
!! AACAAATAATACGTGAAATT+CGG + chr1_1:57688534-57688553 None:intergenic 20.0%
!! TAGATAAAATTAAAGTGTGA+AGG + chr1_1:57687640-57687659 None:intergenic 20.0%
!!! GAATAATTGAACTCATTTTT+TGG + chr1_1:57687713-57687732 None:intergenic 20.0%
!! TAAGCTGAAAAATATGTAAA+AGG - chr1_1:57687934-57687953 Msa0031110:intron 20.0%
!! TTTCGATAGAAAAAAATATG+TGG - chr1_1:57688326-57688345 Msa0031110:intron 20.0%
!! ATAGAAAAAAATATGTGGTT+TGG - chr1_1:57688331-57688350 Msa0031110:intron 20.0%
!! AACAAATAATACGTGAAATT+CGG + chr1_1:57688534-57688553 None:intergenic 20.0%
! AAATGTAAATATGTTTGTCG+TGG - chr1_1:57687391-57687410 Msa0031110:CDS 25.0%
! ATCAAATAGGTTCTTCATAT+AGG - chr1_1:57687484-57687503 Msa0031110:intron 25.0%
! GGATATAATTGGAGAAAATA+CGG - chr1_1:57687567-57687586 Msa0031110:intron 25.0%
! GATATAATTGGAGAAAATAC+GGG - chr1_1:57687568-57687587 Msa0031110:intron 25.0%
! AATTATTCAGATTCACAAGT+AGG - chr1_1:57687725-57687744 Msa0031110:intron 25.0%
! TTATCCATGAATTGTACTAT+AGG + chr1_1:57687865-57687884 None:intergenic 25.0%
! TTGTAATTGAAATTAGGGTT+AGG - chr1_1:57688366-57688385 Msa0031110:intron 25.0%
! ACAAATAATACGTGAAATTC+GGG + chr1_1:57688533-57688552 None:intergenic 25.0%
! TTACCAATATTGTCAAAACT+AGG + chr1_1:57688800-57688819 None:intergenic 25.0%
!!! TTTGACAATATTGGTAATGA+TGG - chr1_1:57688803-57688822 Msa0031110:CDS 25.0%
! AAATGTAAATATGTTTGTCG+TGG - chr1_1:57687391-57687410 Msa0031110:CDS 25.0%
! ATCAAATAGGTTCTTCATAT+AGG - chr1_1:57687484-57687503 Msa0031110:intron 25.0%
! GGATATAATTGGAGAAAATA+CGG - chr1_1:57687567-57687586 Msa0031110:intron 25.0%
! GATATAATTGGAGAAAATAC+GGG - chr1_1:57687568-57687587 Msa0031110:intron 25.0%
! AATTATTCAGATTCACAAGT+AGG - chr1_1:57687725-57687744 Msa0031110:intron 25.0%
! TTATCCATGAATTGTACTAT+AGG + chr1_1:57687865-57687884 None:intergenic 25.0%
! TTGTAATTGAAATTAGGGTT+AGG - chr1_1:57688366-57688385 Msa0031110:intron 25.0%
! ACAAATAATACGTGAAATTC+GGG + chr1_1:57688533-57688552 None:intergenic 25.0%
! TTACCAATATTGTCAAAACT+AGG + chr1_1:57688800-57688819 None:intergenic 25.0%
!!! TTTGACAATATTGGTAATGA+TGG - chr1_1:57688803-57688822 Msa0031110:CDS 25.0%
! AATAAAACCTACCTCCTTTT+GGG + chr1_1:57687369-57687388 None:intergenic 30.0%
ATCGCGATCTTAAATCAAAT+AGG - chr1_1:57687471-57687490 Msa0031110:CDS 30.0%
ATATTTATTCTAGGCTCTGT+GGG + chr1_1:57687513-57687532 None:intergenic 30.0%
TATATTTATTCTAGGCTCTG+TGG + chr1_1:57687514-57687533 None:intergenic 30.0%
TCTTAGACGATGGATATAAT+TGG - chr1_1:57687556-57687575 Msa0031110:intron 30.0%
CTTAGAGTTACAAATTCTAC+TGG + chr1_1:57687918-57687937 None:intergenic 30.0%
ATTTGATCACAAAGTTCAAC+AGG + chr1_1:57687979-57687998 None:intergenic 30.0%
AAATAATACGTGAAATTCGG+GGG + chr1_1:57688531-57688550 None:intergenic 30.0%
CAAATAATACGTGAAATTCG+GGG + chr1_1:57688532-57688551 None:intergenic 30.0%
! AATAAAACCTACCTCCTTTT+GGG + chr1_1:57687369-57687388 None:intergenic 30.0%
ATCGCGATCTTAAATCAAAT+AGG - chr1_1:57687471-57687490 Msa0031110:CDS 30.0%
ATATTTATTCTAGGCTCTGT+GGG + chr1_1:57687513-57687532 None:intergenic 30.0%
TATATTTATTCTAGGCTCTG+TGG + chr1_1:57687514-57687533 None:intergenic 30.0%
TCTTAGACGATGGATATAAT+TGG - chr1_1:57687556-57687575 Msa0031110:intron 30.0%
CTTAGAGTTACAAATTCTAC+TGG + chr1_1:57687918-57687937 None:intergenic 30.0%
ATTTGATCACAAAGTTCAAC+AGG + chr1_1:57687979-57687998 None:intergenic 30.0%
AAATAATACGTGAAATTCGG+GGG + chr1_1:57688531-57688550 None:intergenic 30.0%
CAAATAATACGTGAAATTCG+GGG + chr1_1:57688532-57688551 None:intergenic 30.0%
! ATAAAACCTACCTCCTTTTG+GGG + chr1_1:57687368-57687387 None:intergenic 35.0%
! CAATAAAACCTACCTCCTTT+TGG + chr1_1:57687370-57687389 None:intergenic 35.0%
AAGATTGATCTCTTAGACGA+TGG - chr1_1:57687546-57687565 Msa0031110:intron 35.0%
AGCAATATCACCTAGGATTA+GGG + chr1_1:57687614-57687633 None:intergenic 35.0%
AAGCAATATCACCTAGGATT+AGG + chr1_1:57687615-57687634 None:intergenic 35.0%
TGAGTTATCCATGAATGCTA+TGG - chr1_1:57687661-57687680 Msa0031110:intron 35.0%
AAAGACAACCATAGCATTCA+TGG + chr1_1:57687672-57687691 None:intergenic 35.0%
! CCACTTGTTGGTAAACTATA+TGG + chr1_1:57687799-57687818 None:intergenic 35.0%
CCATATAGTTTACCAACAAG+TGG - chr1_1:57687796-57687815 Msa0031110:intron 35.0%
ATGTCTCTTAAGCTGACAAT+GGG - chr1_1:57687821-57687840 Msa0031110:intron 35.0%
TCCTCCTATAGTACAATTCA+TGG - chr1_1:57687858-57687877 Msa0031110:intron 35.0%
TCCATGAATTGTACTATAGG+AGG + chr1_1:57687862-57687881 None:intergenic 35.0%
ATCCACACAAGAATCGAAAT+CGG - chr1_1:57688111-57688130 Msa0031110:intron 35.0%
! TGATAGTGAAAATGTGGGTT+GGG + chr1_1:57688233-57688252 None:intergenic 35.0%
!! TTGATAGTGAAAATGTGGGT+TGG + chr1_1:57688234-57688253 None:intergenic 35.0%
!! GGGTTTGATAGTGAAAATGT+GGG + chr1_1:57688238-57688257 None:intergenic 35.0%
!! ACAAATGGGTTGATTAGGTT+CGG + chr1_1:57688259-57688278 None:intergenic 35.0%
CTAATCAACCCATTTGTGAA+CGG - chr1_1:57688262-57688281 Msa0031110:intron 35.0%
ATACCTGAAACCAAACTTTG+TGG - chr1_1:57688399-57688418 Msa0031110:intron 35.0%
TACCTGAAACCAAACTTTGT+GGG - chr1_1:57688400-57688419 Msa0031110:intron 35.0%
TTACATGAGCATATCGTTGA+CGG + chr1_1:57688442-57688461 None:intergenic 35.0%
CGATATGCTCATGTAATTAG+TGG - chr1_1:57688446-57688465 Msa0031110:intron 35.0%
AATAATACGTGAAATTCGGG+GGG + chr1_1:57688530-57688549 None:intergenic 35.0%
TGCTTGCCTGTATAATGTTT+AGG - chr1_1:57688609-57688628 Msa0031110:CDS 35.0%
GTAGCTCCTAAACATTATAC+AGG + chr1_1:57688618-57688637 None:intergenic 35.0%
TAGGAGCTACTACAAATGTA+CGG - chr1_1:57688628-57688647 Msa0031110:CDS 35.0%
TACGTTGTGATGACATCTTT+AGG + chr1_1:57688701-57688720 None:intergenic 35.0%
GATGTCATCACAACGTATAT+AGG - chr1_1:57688704-57688723 Msa0031110:intron 35.0%
ATGTTGGAACGTCATGATTA+TGG + chr1_1:57688733-57688752 None:intergenic 35.0%
! AAATGGTGTTGGAAATAGTG+TGG + chr1_1:57688769-57688788 None:intergenic 35.0%
TATTTCCAACACCATTTCTG+AGG - chr1_1:57688772-57688791 Msa0031110:CDS 35.0%
!!! GAGCCTAGTTTTGACAATAT+TGG - chr1_1:57688794-57688813 Msa0031110:CDS 35.0%
! ATAAAACCTACCTCCTTTTG+GGG + chr1_1:57687368-57687387 None:intergenic 35.0%
! CAATAAAACCTACCTCCTTT+TGG + chr1_1:57687370-57687389 None:intergenic 35.0%
AAGATTGATCTCTTAGACGA+TGG - chr1_1:57687546-57687565 Msa0031110:intron 35.0%
AGCAATATCACCTAGGATTA+GGG + chr1_1:57687614-57687633 None:intergenic 35.0%
AAGCAATATCACCTAGGATT+AGG + chr1_1:57687615-57687634 None:intergenic 35.0%
TGAGTTATCCATGAATGCTA+TGG - chr1_1:57687661-57687680 Msa0031110:intron 35.0%
AAAGACAACCATAGCATTCA+TGG + chr1_1:57687672-57687691 None:intergenic 35.0%
! CCACTTGTTGGTAAACTATA+TGG + chr1_1:57687799-57687818 None:intergenic 35.0%
CCATATAGTTTACCAACAAG+TGG - chr1_1:57687796-57687815 Msa0031110:intron 35.0%
ATGTCTCTTAAGCTGACAAT+GGG - chr1_1:57687821-57687840 Msa0031110:intron 35.0%
TCCTCCTATAGTACAATTCA+TGG - chr1_1:57687858-57687877 Msa0031110:intron 35.0%
TCCATGAATTGTACTATAGG+AGG + chr1_1:57687862-57687881 None:intergenic 35.0%
ATCCACACAAGAATCGAAAT+CGG - chr1_1:57688111-57688130 Msa0031110:intron 35.0%
! TGATAGTGAAAATGTGGGTT+GGG + chr1_1:57688233-57688252 None:intergenic 35.0%
!! TTGATAGTGAAAATGTGGGT+TGG + chr1_1:57688234-57688253 None:intergenic 35.0%
!! GGGTTTGATAGTGAAAATGT+GGG + chr1_1:57688238-57688257 None:intergenic 35.0%
!! ACAAATGGGTTGATTAGGTT+CGG + chr1_1:57688259-57688278 None:intergenic 35.0%
CTAATCAACCCATTTGTGAA+CGG - chr1_1:57688262-57688281 Msa0031110:intron 35.0%
ATACCTGAAACCAAACTTTG+TGG - chr1_1:57688399-57688418 Msa0031110:intron 35.0%
TACCTGAAACCAAACTTTGT+GGG - chr1_1:57688400-57688419 Msa0031110:intron 35.0%
TTACATGAGCATATCGTTGA+CGG + chr1_1:57688442-57688461 None:intergenic 35.0%
CGATATGCTCATGTAATTAG+TGG - chr1_1:57688446-57688465 Msa0031110:intron 35.0%
AATAATACGTGAAATTCGGG+GGG + chr1_1:57688530-57688549 None:intergenic 35.0%
TGCTTGCCTGTATAATGTTT+AGG - chr1_1:57688609-57688628 Msa0031110:CDS 35.0%
GTAGCTCCTAAACATTATAC+AGG + chr1_1:57688618-57688637 None:intergenic 35.0%
TAGGAGCTACTACAAATGTA+CGG - chr1_1:57688628-57688647 Msa0031110:CDS 35.0%
TACGTTGTGATGACATCTTT+AGG + chr1_1:57688701-57688720 None:intergenic 35.0%
GATGTCATCACAACGTATAT+AGG - chr1_1:57688704-57688723 Msa0031110:intron 35.0%
ATGTTGGAACGTCATGATTA+TGG + chr1_1:57688733-57688752 None:intergenic 35.0%
! AAATGGTGTTGGAAATAGTG+TGG + chr1_1:57688769-57688788 None:intergenic 35.0%
TATTTCCAACACCATTTCTG+AGG - chr1_1:57688772-57688791 Msa0031110:CDS 35.0%
!!! GAGCCTAGTTTTGACAATAT+TGG - chr1_1:57688794-57688813 Msa0031110:CDS 35.0%
!! CCTAGTTCTTCATTTTCGCT+TGG + chr1_1:57687303-57687322 None:intergenic 40.0%
CCAAGCGAAAATGAAGAACT+AGG - chr1_1:57687300-57687319 Msa0031110:CDS 40.0%
AGCGAAAATGAAGAACTAGG+TGG - chr1_1:57687303-57687322 Msa0031110:CDS 40.0%
! TAAAACCTACCTCCTTTTGG+GGG + chr1_1:57687367-57687386 None:intergenic 40.0%
GTCTAAGAGATCAATCTTGC+TGG + chr1_1:57687544-57687563 None:intergenic 40.0%
AAGGAGAAGCAATATCACCT+AGG + chr1_1:57687621-57687640 None:intergenic 40.0%
TAAGAGACATGTCCACTTGT+TGG + chr1_1:57687811-57687830 None:intergenic 40.0%
CATGTCTCTTAAGCTGACAA+TGG - chr1_1:57687820-57687839 Msa0031110:intron 40.0%
TGTCTCTTAAGCTGACAATG+GGG - chr1_1:57687822-57687841 Msa0031110:intron 40.0%
ACCCTCTAGATTTCAAGAGA+AGG - chr1_1:57688035-57688054 Msa0031110:intron 40.0%
CCCTTCTCTTGAAATCTAGA+GGG + chr1_1:57688039-57688058 None:intergenic 40.0%
CCCTCTAGATTTCAAGAGAA+GGG - chr1_1:57688036-57688055 Msa0031110:intron 40.0%
CCTCTAGATTTCAAGAGAAG+GGG - chr1_1:57688037-57688056 Msa0031110:intron 40.0%
CACGGCAGACTCAAATTATT+GGG + chr1_1:57688064-57688083 None:intergenic 40.0%
ACACGGCAGACTCAAATTAT+TGG + chr1_1:57688065-57688084 None:intergenic 40.0%
AATAATTTGAGTCTGCCGTG+TGG - chr1_1:57688064-57688083 Msa0031110:intron 40.0%
ATAATTTGAGTCTGCCGTGT+GGG - chr1_1:57688065-57688084 Msa0031110:intron 40.0%
TCCACACAAGAATCGAAATC+GGG - chr1_1:57688112-57688131 Msa0031110:intron 40.0%
! CGTTAAAAGTTGAACGGGTT+GGG + chr1_1:57688196-57688215 None:intergenic 40.0%
! CCAACCCGTTCAACTTTTAA+CGG - chr1_1:57688194-57688213 Msa0031110:intron 40.0%
! CAACCCGTTCAACTTTTAAC+GGG - chr1_1:57688195-57688214 Msa0031110:intron 40.0%
CAACCCGTTAAAAGTTGAAC+GGG + chr1_1:57688201-57688220 None:intergenic 40.0%
CCAACCCGTTAAAAGTTGAA+CGG + chr1_1:57688202-57688221 None:intergenic 40.0%
!!! CGTTCAACTTTTAACGGGTT+GGG - chr1_1:57688200-57688219 Msa0031110:intron 40.0%
!! CGGGTTTGATAGTGAAAATG+TGG + chr1_1:57688239-57688258 None:intergenic 40.0%
!! CAAATGGGTTGATTAGGTTC+GGG + chr1_1:57688258-57688277 None:intergenic 40.0%
!! CGTTCACAAATGGGTTGATT+AGG + chr1_1:57688264-57688283 None:intergenic 40.0%
AACCCATTTGTGAACGGTTT+GGG - chr1_1:57688268-57688287 Msa0031110:intron 40.0%
AACCCAAACCGTTCACAAAT+GGG + chr1_1:57688273-57688292 None:intergenic 40.0%
TACATGAGCATATCGTTGAC+GGG + chr1_1:57688441-57688460 None:intergenic 40.0%
! ATGTAATTAGTGGACCTGGT+CGG - chr1_1:57688456-57688475 Msa0031110:intron 40.0%
GTTTCAATCACCAGTTTCGT+GGG - chr1_1:57688478-57688497 Msa0031110:intron 40.0%
TACTACAAATGTACGGTACC+AGG - chr1_1:57688635-57688654 Msa0031110:CDS 40.0%
TCATGACGTTCCAACATCTA+TGG - chr1_1:57688736-57688755 Msa0031110:intron 40.0%
TGGCTATTAGCCATAGATGT+TGG + chr1_1:57688749-57688768 None:intergenic 40.0%
AAAACTAGGCTCCTCAGAAA+TGG + chr1_1:57688786-57688805 None:intergenic 40.0%
!! CCTAGTTCTTCATTTTCGCT+TGG + chr1_1:57687303-57687322 None:intergenic 40.0%
CCAAGCGAAAATGAAGAACT+AGG - chr1_1:57687300-57687319 Msa0031110:CDS 40.0%
AGCGAAAATGAAGAACTAGG+TGG - chr1_1:57687303-57687322 Msa0031110:CDS 40.0%
! TAAAACCTACCTCCTTTTGG+GGG + chr1_1:57687367-57687386 None:intergenic 40.0%
GTCTAAGAGATCAATCTTGC+TGG + chr1_1:57687544-57687563 None:intergenic 40.0%
AAGGAGAAGCAATATCACCT+AGG + chr1_1:57687621-57687640 None:intergenic 40.0%
TAAGAGACATGTCCACTTGT+TGG + chr1_1:57687811-57687830 None:intergenic 40.0%
CATGTCTCTTAAGCTGACAA+TGG - chr1_1:57687820-57687839 Msa0031110:intron 40.0%
TGTCTCTTAAGCTGACAATG+GGG - chr1_1:57687822-57687841 Msa0031110:intron 40.0%
ACCCTCTAGATTTCAAGAGA+AGG - chr1_1:57688035-57688054 Msa0031110:intron 40.0%
CCCTTCTCTTGAAATCTAGA+GGG + chr1_1:57688039-57688058 None:intergenic 40.0%
CCCTCTAGATTTCAAGAGAA+GGG - chr1_1:57688036-57688055 Msa0031110:intron 40.0%
CCTCTAGATTTCAAGAGAAG+GGG - chr1_1:57688037-57688056 Msa0031110:intron 40.0%
CACGGCAGACTCAAATTATT+GGG + chr1_1:57688064-57688083 None:intergenic 40.0%
ACACGGCAGACTCAAATTAT+TGG + chr1_1:57688065-57688084 None:intergenic 40.0%
AATAATTTGAGTCTGCCGTG+TGG - chr1_1:57688064-57688083 Msa0031110:intron 40.0%
ATAATTTGAGTCTGCCGTGT+GGG - chr1_1:57688065-57688084 Msa0031110:intron 40.0%
TCCACACAAGAATCGAAATC+GGG - chr1_1:57688112-57688131 Msa0031110:intron 40.0%
! CGTTAAAAGTTGAACGGGTT+GGG + chr1_1:57688196-57688215 None:intergenic 40.0%
! CCAACCCGTTCAACTTTTAA+CGG - chr1_1:57688194-57688213 Msa0031110:intron 40.0%
! CAACCCGTTCAACTTTTAAC+GGG - chr1_1:57688195-57688214 Msa0031110:intron 40.0%
CAACCCGTTAAAAGTTGAAC+GGG + chr1_1:57688201-57688220 None:intergenic 40.0%
CCAACCCGTTAAAAGTTGAA+CGG + chr1_1:57688202-57688221 None:intergenic 40.0%
!!! CGTTCAACTTTTAACGGGTT+GGG - chr1_1:57688200-57688219 Msa0031110:intron 40.0%
!! CGGGTTTGATAGTGAAAATG+TGG + chr1_1:57688239-57688258 None:intergenic 40.0%
!! CAAATGGGTTGATTAGGTTC+GGG + chr1_1:57688258-57688277 None:intergenic 40.0%
!! CGTTCACAAATGGGTTGATT+AGG + chr1_1:57688264-57688283 None:intergenic 40.0%
AACCCATTTGTGAACGGTTT+GGG - chr1_1:57688268-57688287 Msa0031110:intron 40.0%
AACCCAAACCGTTCACAAAT+GGG + chr1_1:57688273-57688292 None:intergenic 40.0%
TACATGAGCATATCGTTGAC+GGG + chr1_1:57688441-57688460 None:intergenic 40.0%
! ATGTAATTAGTGGACCTGGT+CGG - chr1_1:57688456-57688475 Msa0031110:intron 40.0%
GTTTCAATCACCAGTTTCGT+GGG - chr1_1:57688478-57688497 Msa0031110:intron 40.0%
TACTACAAATGTACGGTACC+AGG - chr1_1:57688635-57688654 Msa0031110:CDS 40.0%
TCATGACGTTCCAACATCTA+TGG - chr1_1:57688736-57688755 Msa0031110:intron 40.0%
TGGCTATTAGCCATAGATGT+TGG + chr1_1:57688749-57688768 None:intergenic 40.0%
AAAACTAGGCTCCTCAGAAA+TGG + chr1_1:57688786-57688805 None:intergenic 40.0%
GCATAGGAAACCCTAATCCT+AGG - chr1_1:57687601-57687620 Msa0031110:intron 45.0%
CCCCTTCTCTTGAAATCTAG+AGG + chr1_1:57688040-57688059 None:intergenic 45.0%
ACCCGATTTCGATTCTTGTG+TGG + chr1_1:57688116-57688135 None:intergenic 45.0%
AAATCGGGTTCCCCTGAATA+GGG - chr1_1:57688127-57688146 Msa0031110:intron 45.0%
!! AACGGGTTGGGTAACTAGTT+TGG + chr1_1:57688184-57688203 None:intergenic 45.0%
CCGTTAAAAGTTGAACGGGT+TGG + chr1_1:57688197-57688216 None:intergenic 45.0%
!! CCGTTCAACTTTTAACGGGT+TGG - chr1_1:57688199-57688218 Msa0031110:intron 45.0%
CAACCCATTTGTGAACGGTT+TGG - chr1_1:57688267-57688286 Msa0031110:intron 45.0%
GAACCCAAACCGTTCACAAA+TGG + chr1_1:57688274-57688293 None:intergenic 45.0%
! GACCCACAAAGTTTGGTTTC+AGG + chr1_1:57688405-57688424 None:intergenic 45.0%
! GCTCATGTAATTAGTGGACC+TGG - chr1_1:57688452-57688471 Msa0031110:intron 45.0%
GGTTTCAATCACCAGTTTCG+TGG - chr1_1:57688477-57688496 Msa0031110:intron 45.0%
AAAGCGTGTAGAGAGAGCTT+GGG - chr1_1:57688670-57688689 Msa0031110:intron 45.0%
GCATAGGAAACCCTAATCCT+AGG - chr1_1:57687601-57687620 Msa0031110:intron 45.0%
CCCCTTCTCTTGAAATCTAG+AGG + chr1_1:57688040-57688059 None:intergenic 45.0%
ACCCGATTTCGATTCTTGTG+TGG + chr1_1:57688116-57688135 None:intergenic 45.0%
AAATCGGGTTCCCCTGAATA+GGG - chr1_1:57688127-57688146 Msa0031110:intron 45.0%
!! AACGGGTTGGGTAACTAGTT+TGG + chr1_1:57688184-57688203 None:intergenic 45.0%
CCGTTAAAAGTTGAACGGGT+TGG + chr1_1:57688197-57688216 None:intergenic 45.0%
!! CCGTTCAACTTTTAACGGGT+TGG - chr1_1:57688199-57688218 Msa0031110:intron 45.0%
CAACCCATTTGTGAACGGTT+TGG - chr1_1:57688267-57688286 Msa0031110:intron 45.0%
GAACCCAAACCGTTCACAAA+TGG + chr1_1:57688274-57688293 None:intergenic 45.0%
! GACCCACAAAGTTTGGTTTC+AGG + chr1_1:57688405-57688424 None:intergenic 45.0%
! GCTCATGTAATTAGTGGACC+TGG - chr1_1:57688452-57688471 Msa0031110:intron 45.0%
GGTTTCAATCACCAGTTTCG+TGG - chr1_1:57688477-57688496 Msa0031110:intron 45.0%
AAAGCGTGTAGAGAGAGCTT+GGG - chr1_1:57688670-57688689 Msa0031110:intron 45.0%
TTGTTGAACCTGCCCCCAAA+AGG - chr1_1:57687352-57687371 Msa0031110:CDS 50.0%
TACGGGCAACGAGTTTGCAT+AGG - chr1_1:57687585-57687604 Msa0031110:intron 50.0%
TTAAGCTGACAATGGGGTGC+AGG - chr1_1:57687828-57687847 Msa0031110:intron 50.0%
TAAGCTGACAATGGGGTGCA+GGG - chr1_1:57687829-57687848 Msa0031110:intron 50.0%
GCCATGCTATACTTCCCACA+CGG + chr1_1:57688082-57688101 None:intergenic 50.0%
GAAATCGGGTTCCCCTGAAT+AGG - chr1_1:57688126-57688145 Msa0031110:intron 50.0%
AATCGGGTTCCCCTGAATAG+GGG - chr1_1:57688128-57688147 Msa0031110:intron 50.0%
! AATAGGGGTGTACACGGGTT+GGG - chr1_1:57688143-57688162 Msa0031110:intron 50.0%
! TTGTGAACGGTTTGGGTTCG+CGG - chr1_1:57688275-57688294 Msa0031110:intron 50.0%
CCAAACTTTGTGGGTCGAGT+CGG - chr1_1:57688409-57688428 Msa0031110:intron 50.0%
CAAACTTTGTGGGTCGAGTC+GGG - chr1_1:57688410-57688429 Msa0031110:intron 50.0%
ACTGGTGATTGAAACCGACC+AGG + chr1_1:57688473-57688492 None:intergenic 50.0%
ATACGTGAAATTCGGGGGGT+CGG + chr1_1:57688526-57688545 None:intergenic 50.0%
CGCTTTCGAATGCTACAACC+TGG + chr1_1:57688656-57688675 None:intergenic 50.0%
! GAAAGCGTGTAGAGAGAGCT+TGG - chr1_1:57688669-57688688 Msa0031110:intron 50.0%
AGGCTCCTCAGAAATGGTGT+TGG + chr1_1:57688780-57688799 None:intergenic 50.0%
TTGTTGAACCTGCCCCCAAA+AGG - chr1_1:57687352-57687371 Msa0031110:CDS 50.0%
TACGGGCAACGAGTTTGCAT+AGG - chr1_1:57687585-57687604 Msa0031110:intron 50.0%
TTAAGCTGACAATGGGGTGC+AGG - chr1_1:57687828-57687847 Msa0031110:intron 50.0%
TAAGCTGACAATGGGGTGCA+GGG - chr1_1:57687829-57687848 Msa0031110:intron 50.0%
GCCATGCTATACTTCCCACA+CGG + chr1_1:57688082-57688101 None:intergenic 50.0%
GAAATCGGGTTCCCCTGAAT+AGG - chr1_1:57688126-57688145 Msa0031110:intron 50.0%
AATCGGGTTCCCCTGAATAG+GGG - chr1_1:57688128-57688147 Msa0031110:intron 50.0%
! AATAGGGGTGTACACGGGTT+GGG - chr1_1:57688143-57688162 Msa0031110:intron 50.0%
! TTGTGAACGGTTTGGGTTCG+CGG - chr1_1:57688275-57688294 Msa0031110:intron 50.0%
CCAAACTTTGTGGGTCGAGT+CGG - chr1_1:57688409-57688428 Msa0031110:intron 50.0%
CAAACTTTGTGGGTCGAGTC+GGG - chr1_1:57688410-57688429 Msa0031110:intron 50.0%
ACTGGTGATTGAAACCGACC+AGG + chr1_1:57688473-57688492 None:intergenic 50.0%
ATACGTGAAATTCGGGGGGT+CGG + chr1_1:57688526-57688545 None:intergenic 50.0%
CGCTTTCGAATGCTACAACC+TGG + chr1_1:57688656-57688675 None:intergenic 50.0%
! GAAAGCGTGTAGAGAGAGCT+TGG - chr1_1:57688669-57688688 Msa0031110:intron 50.0%
AGGCTCCTCAGAAATGGTGT+TGG + chr1_1:57688780-57688799 None:intergenic 50.0%
TTGAACCTGCCCCCAAAAGG+AGG - chr1_1:57687355-57687374 Msa0031110:CDS 55.0%
AAGCTGACAATGGGGTGCAG+GGG - chr1_1:57687830-57687849 Msa0031110:intron 55.0%
! GCCGTGTGGGAAGTATAGCA+TGG - chr1_1:57688078-57688097 Msa0031110:intron 55.0%
CCGTGTACACCCCTATTCAG+GGG + chr1_1:57688140-57688159 None:intergenic 55.0%
! CCCCTGAATAGGGGTGTACA+CGG - chr1_1:57688137-57688156 Msa0031110:intron 55.0%
CCCGTGTACACCCCTATTCA+GGG + chr1_1:57688141-57688160 None:intergenic 55.0%
! CCCTGAATAGGGGTGTACAC+GGG - chr1_1:57688138-57688157 Msa0031110:intron 55.0%
ACCCGTGTACACCCCTATTC+AGG + chr1_1:57688142-57688161 None:intergenic 55.0%
! GAATAGGGGTGTACACGGGT+TGG - chr1_1:57688142-57688161 Msa0031110:intron 55.0%
!! TACACGGGTTGGGTTGGATC+AGG - chr1_1:57688153-57688172 Msa0031110:intron 55.0%
! CCGACTCGACCCACAAAGTT+TGG + chr1_1:57688412-57688431 None:intergenic 55.0%
! TGTGGGTTGACCCACGAAAC+TGG + chr1_1:57688491-57688510 None:intergenic 55.0%
! GTCGGAGTGTTCATGGGTGT+GGG + chr1_1:57688508-57688527 None:intergenic 55.0%
TTGAACCTGCCCCCAAAAGG+AGG - chr1_1:57687355-57687374 Msa0031110:CDS 55.0%
AAGCTGACAATGGGGTGCAG+GGG - chr1_1:57687830-57687849 Msa0031110:intron 55.0%
! GCCGTGTGGGAAGTATAGCA+TGG - chr1_1:57688078-57688097 Msa0031110:intron 55.0%
CCGTGTACACCCCTATTCAG+GGG + chr1_1:57688140-57688159 None:intergenic 55.0%
! CCCCTGAATAGGGGTGTACA+CGG - chr1_1:57688137-57688156 Msa0031110:intron 55.0%
CCCGTGTACACCCCTATTCA+GGG + chr1_1:57688141-57688160 None:intergenic 55.0%
! CCCTGAATAGGGGTGTACAC+GGG - chr1_1:57688138-57688157 Msa0031110:intron 55.0%
ACCCGTGTACACCCCTATTC+AGG + chr1_1:57688142-57688161 None:intergenic 55.0%
! GAATAGGGGTGTACACGGGT+TGG - chr1_1:57688142-57688161 Msa0031110:intron 55.0%
!! TACACGGGTTGGGTTGGATC+AGG - chr1_1:57688153-57688172 Msa0031110:intron 55.0%
! CCGACTCGACCCACAAAGTT+TGG + chr1_1:57688412-57688431 None:intergenic 55.0%
! TGTGGGTTGACCCACGAAAC+TGG + chr1_1:57688491-57688510 None:intergenic 55.0%
! GTCGGAGTGTTCATGGGTGT+GGG + chr1_1:57688508-57688527 None:intergenic 55.0%
ACCTGCCCCCAAAAGGAGGT+AGG - chr1_1:57687359-57687378 Msa0031110:CDS 60.0%
!! ACCTACCTCCTTTTGGGGGC+AGG + chr1_1:57687363-57687382 None:intergenic 60.0%
AGCTGACAATGGGGTGCAGG+GGG - chr1_1:57687831-57687850 Msa0031110:intron 60.0%
! GGTCGGAGTGTTCATGGGTG+TGG + chr1_1:57688509-57688528 None:intergenic 60.0%
GCGTGTAGAGAGAGCTTGGG+TGG - chr1_1:57688673-57688692 Msa0031110:intron 60.0%
ACCTGCCCCCAAAAGGAGGT+AGG - chr1_1:57687359-57687378 Msa0031110:CDS 60.0%
!! ACCTACCTCCTTTTGGGGGC+AGG + chr1_1:57687363-57687382 None:intergenic 60.0%
AGCTGACAATGGGGTGCAGG+GGG - chr1_1:57687831-57687850 Msa0031110:intron 60.0%
! GGTCGGAGTGTTCATGGGTG+TGG + chr1_1:57688509-57688528 None:intergenic 60.0%
GCGTGTAGAGAGAGCTTGGG+TGG - chr1_1:57688673-57688692 Msa0031110:intron 60.0%
!! GGGGTGTACACGGGTTGGGT+TGG - chr1_1:57688147-57688166 Msa0031110:intron 65.0%
! CGGGGGGTCGGAGTGTTCAT+GGG + chr1_1:57688514-57688533 None:intergenic 65.0%
! TCGGGGGGTCGGAGTGTTCA+TGG + chr1_1:57688515-57688534 None:intergenic 65.0%
!! GGGGTGTACACGGGTTGGGT+TGG - chr1_1:57688147-57688166 Msa0031110:intron 65.0%
! CGGGGGGTCGGAGTGTTCAT+GGG + chr1_1:57688514-57688533 None:intergenic 65.0%
! TCGGGGGGTCGGAGTGTTCA+TGG + chr1_1:57688515-57688534 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 57687294 57688838 57687294 ID=Msa0031110;Name=Msa0031110
chr1_1 mRNA 57687294 57688838 57687294 ID=Msa0031110-mRNA-1;Parent=Msa0031110;Name=Msa0031110-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|150
chr1_1 exon 57688756 57688838 57688756 ID=Msa0031110-mRNA-1:exon:17436;Parent=Msa0031110-mRNA-1
chr1_1 exon 57688510 57688671 57688510 ID=Msa0031110-mRNA-1:exon:17435;Parent=Msa0031110-mRNA-1
chr1_1 exon 57687294 57687501 57687294 ID=Msa0031110-mRNA-1:exon:17434;Parent=Msa0031110-mRNA-1
chr1_1 CDS 57688756 57688838 57688756 ID=Msa0031110-mRNA-1:cds;Parent=Msa0031110-mRNA-1
chr1_1 CDS 57688510 57688671 57688510 ID=Msa0031110-mRNA-1:cds;Parent=Msa0031110-mRNA-1
chr1_1 CDS 57687294 57687501 57687294 ID=Msa0031110-mRNA-1:cds;Parent=Msa0031110-mRNA-1
Gene Sequence

>Msa0031110

ATGGAACCAAGCGAAAATGAAGAACTAGGTGGTGATGAAATTGAAGTTGATCGAAAAATTGTTGAACCTGCCCCCAAAAGGAGAAATGCAGAGATCGCGATCTTAAATCAAATAGGTTCTTCATATAGGTCTCCCACAGAGCCTAGAATAAATATAATAACAACCAGCAAGATTGATCTCTTAGACGATGGATATAATTGGAGAAAATACGGGCAACGAGTTTGCATAGGAAACCCTAATCCTAGGAGCTACTACAAATGTACGGTACCAGGTTGTAGCATTCGAAAGCGTGTAGAGAGAGCTTGGGTGGATCCTAAAGATGTCATCACAACGTATATAGGAAGCCATAATCATGACGTTCCAACATCTATGGCTAATAGCCACACTATTTCCAACACCATTTCTGAGGAGCCTAGTTTTGACAATATTGGTAATGATGGCGACAATATTTAA
Protein sequence

>Msa0031110

MEPSENEELGGDEIEVDRKIVEPAPKRRNAEIAILNQIGSSYRSPTEPRINIITTSKIDLLDDGYNWRKYGQRVCIGNPNPRSYYKCTVPGCSIRKRVERAWVDPKDVITTYIGSHNHDVPTSMANSHTISNTISEEPSFDNIGNDGDNI*