Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031380 | sp|Q9SWF9|ZFNL_PEA | 41.667 | 276 | 61 | 7 | 81 | 258 | 123 | 396 | 1.46e-52 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0031380 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031380 | MtrunA17_Chr7g0249221 | 34.783 | 276 | 81 | 8 | 81 | 258 | 123 | 397 | 3.85e-34 | 128 |
| Msa0031380 | MtrunA17_Chr4g0058011 | 33.981 | 206 | 68 | 7 | 80 | 217 | 328 | 533 | 1.82e-22 | 97.1 |
| Msa0031380 | MtrunA17_Chr5g0438891 | 31.489 | 235 | 79 | 8 | 82 | 239 | 129 | 358 | 1.91e-21 | 93.2 |
| Msa0031380 | MtrunA17_Chr3g0116431 | 31.455 | 213 | 72 | 7 | 80 | 220 | 268 | 478 | 4.15e-20 | 89.7 |
| Msa0031380 | MtrunA17_Chr8g0356241 | 30.588 | 170 | 74 | 6 | 82 | 217 | 315 | 474 | 7.61e-15 | 74.3 |
| Msa0031380 | MtrunA17_Chr8g0356241 | 27.329 | 161 | 56 | 4 | 81 | 220 | 143 | 263 | 3.70e-13 | 69.3 |
| Msa0031380 | MtrunA17_Chr1g0195891 | 28.723 | 188 | 78 | 6 | 81 | 217 | 142 | 324 | 6.74e-12 | 65.1 |
| Msa0031380 | MtrunA17_Chr4g0066941 | 28.049 | 164 | 45 | 4 | 81 | 218 | 48 | 164 | 2.38e-11 | 63.9 |
| Msa0031380 | MtrunA17_Chr4g0066941 | 35.156 | 128 | 53 | 3 | 122 | 219 | 280 | 407 | 8.68e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031380 | AT5G16540.2 | 42.342 | 222 | 83 | 7 | 81 | 260 | 135 | 353 | 4.48e-43 | 151 |
| Msa0031380 | AT5G16540.2 | 28.659 | 164 | 44 | 4 | 81 | 218 | 44 | 160 | 4.36e-13 | 69.3 |
| Msa0031380 | AT5G16540.3 | 40.611 | 229 | 84 | 7 | 81 | 260 | 114 | 339 | 1.22e-41 | 147 |
| Msa0031380 | AT5G16540.3 | 28.659 | 164 | 44 | 4 | 81 | 218 | 23 | 139 | 5.59e-13 | 68.6 |
| Msa0031380 | AT5G16540.1 | 40.611 | 229 | 84 | 7 | 81 | 260 | 135 | 360 | 1.59e-41 | 147 |
| Msa0031380 | AT5G16540.1 | 28.659 | 164 | 44 | 4 | 81 | 218 | 44 | 160 | 4.61e-13 | 68.9 |
| Msa0031380 | AT3G02830.2 | 34.914 | 232 | 74 | 6 | 81 | 235 | 113 | 344 | 2.14e-34 | 128 |
| Msa0031380 | AT3G02830.1 | 34.914 | 232 | 74 | 6 | 81 | 235 | 133 | 364 | 2.57e-34 | 128 |
| Msa0031380 | AT5G16540.4 | 43.182 | 132 | 51 | 4 | 81 | 191 | 114 | 242 | 1.13e-25 | 103 |
| Msa0031380 | AT5G16540.4 | 27.439 | 164 | 46 | 3 | 81 | 218 | 23 | 139 | 4.70e-13 | 68.2 |
| Msa0031380 | AT1G04990.4 | 31.220 | 205 | 91 | 8 | 80 | 237 | 55 | 256 | 7.34e-18 | 82.4 |
| Msa0031380 | AT5G63260.2 | 28.992 | 238 | 88 | 10 | 57 | 216 | 187 | 421 | 1.56e-17 | 82.4 |
| Msa0031380 | AT5G63260.1 | 28.992 | 238 | 88 | 10 | 57 | 216 | 171 | 405 | 1.67e-17 | 82.4 |
| Msa0031380 | AT1G04990.5 | 31.220 | 205 | 91 | 8 | 80 | 237 | 136 | 337 | 2.41e-17 | 81.6 |
| Msa0031380 | AT2G47850.4 | 42.574 | 101 | 32 | 2 | 154 | 228 | 150 | 250 | 5.87e-17 | 80.1 |
| Msa0031380 | AT2G47850.2 | 42.574 | 101 | 32 | 2 | 154 | 228 | 246 | 346 | 1.14e-16 | 80.1 |
| Msa0031380 | AT2G47850.1 | 40.594 | 101 | 34 | 2 | 154 | 228 | 272 | 372 | 1.43e-16 | 79.7 |
| Msa0031380 | AT2G47850.1 | 28.571 | 161 | 42 | 5 | 84 | 218 | 50 | 163 | 6.25e-11 | 63.2 |
| Msa0031380 | AT2G47850.3 | 40.594 | 101 | 34 | 2 | 154 | 228 | 272 | 372 | 1.43e-16 | 79.7 |
| Msa0031380 | AT2G47850.3 | 28.571 | 161 | 42 | 5 | 84 | 218 | 50 | 163 | 6.25e-11 | 63.2 |
| Msa0031380 | AT3G48440.1 | 30.516 | 213 | 68 | 8 | 82 | 216 | 207 | 417 | 1.69e-16 | 79.7 |
| Msa0031380 | AT3G12680.1 | 29.448 | 163 | 51 | 4 | 81 | 220 | 176 | 297 | 7.09e-16 | 77.8 |
| Msa0031380 | AT3G12680.1 | 29.282 | 181 | 61 | 7 | 81 | 217 | 342 | 499 | 1.82e-15 | 76.6 |
| Msa0031380 | AT1G04990.3 | 28.444 | 225 | 91 | 8 | 80 | 237 | 55 | 276 | 3.71e-15 | 74.7 |
| Msa0031380 | AT1G04990.1 | 28.444 | 225 | 91 | 8 | 80 | 237 | 136 | 357 | 7.72e-15 | 74.3 |
| Msa0031380 | AT1G04990.6 | 28.444 | 225 | 91 | 8 | 80 | 237 | 136 | 357 | 7.72e-15 | 74.3 |
| Msa0031380 | AT1G04990.2 | 28.444 | 225 | 91 | 8 | 80 | 237 | 136 | 357 | 7.72e-15 | 74.3 |
| Msa0031380 | AT5G18550.2 | 43.077 | 65 | 25 | 2 | 164 | 216 | 293 | 357 | 6.52e-11 | 62.8 |
Find 68 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACAGGAGAATGCAAATA+TGG | 0.262315 | 1_1:+58110871 | Msa0031380:CDS |
| CGCAACGGCATATGCAGATT+TGG | 0.329888 | 1_1:+58111744 | Msa0031380:CDS |
| AAGACGGGAGATTGTAAGTT+TGG | 0.336397 | 1_1:+58111426 | Msa0031380:CDS |
| CAGATCGAGGATTTGCAAAT+TGG | 0.336712 | 1_1:+58110992 | Msa0031380:CDS |
| ACCATTGATAGGCATCTATT+AGG | 0.362910 | 1_1:+58111837 | Msa0031380:CDS |
| CTCCTCTGTAATGGACTGGC+TGG | 0.386573 | 1_1:-58111355 | None:intergenic |
| TTCATGTAGAATCGGCATTC+AGG | 0.391570 | 1_1:-58111405 | None:intergenic |
| TGCAGCTATTATTTGAGAAC+AGG | 0.400875 | 1_1:+58110856 | Msa0031380:CDS |
| TCCTCTGTAATGGACTGGCT+GGG | 0.421902 | 1_1:-58111354 | None:intergenic |
| TCAGGCTGACCGGGTCTATC+GGG | 0.448558 | 1_1:-58111387 | None:intergenic |
| TTCAGGCTGACCGGGTCTAT+CGG | 0.450161 | 1_1:-58111388 | None:intergenic |
| GCATCTATTAGGATATTTGT+TGG | 0.453142 | 1_1:+58111848 | Msa0031380:CDS |
| CTTCCGCCAACACCATTGAT+AGG | 0.466503 | 1_1:+58111826 | Msa0031380:CDS |
| CTCCCGTCTTCATGTAGAAT+CGG | 0.467724 | 1_1:-58111413 | None:intergenic |
| CCTCTGTAATGGACTGGCTG+GGG | 0.474020 | 1_1:-58111353 | None:intergenic |
| TATAGCTGAAAATTCCCATT+GGG | 0.476879 | 1_1:-58111788 | None:intergenic |
| GGAAGCACTACACTGCGGTT+TGG | 0.477507 | 1_1:+58108769 | Msa0031380:CDS |
| TACAAGTTTAACCACCCAAT+GGG | 0.479859 | 1_1:+58111774 | Msa0031380:CDS |
| ATTCTTAACCATCGAGGAGT+TGG | 0.491338 | 1_1:+58108748 | Msa0031380:CDS |
| GAATCGGCATTCAGGCTGAC+CGG | 0.492319 | 1_1:-58111397 | None:intergenic |
| TAATATGATGCTTTCGCTAA+GGG | 0.493925 | 1_1:+58110927 | Msa0031380:CDS |
| CTCTGATATTGAAAGCTCCT+AGG | 0.495047 | 1_1:-58111909 | None:intergenic |
| AAATATGTACTCCTCTGTAA+TGG | 0.497326 | 1_1:-58111364 | None:intergenic |
| GATCTGGTGTTGTTGGAGAA+TGG | 0.500260 | 1_1:-58110975 | None:intergenic |
| CAATTTGCAAATCCTCGATC+TGG | 0.500935 | 1_1:-58110991 | None:intergenic |
| AGTCAAGTTCAGCGAAGCCT+AGG | 0.501453 | 1_1:+58111892 | Msa0031380:CDS |
| TGGACTGCAGTAGGGTAAAG+AGG | 0.508006 | 1_1:-58110955 | None:intergenic |
| ATGCCTATCAATGGTGTTGG+CGG | 0.523058 | 1_1:-58111829 | None:intergenic |
| AATCCTCGATCTGGTGTTGT+TGG | 0.525380 | 1_1:-58110982 | None:intergenic |
| GAACAGGAGAATGCAAATAT+GGG | 0.530420 | 1_1:+58110872 | Msa0031380:CDS |
| AATCGGCATTCAGGCTGACC+GGG | 0.530754 | 1_1:-58111396 | None:intergenic |
| AGCATCATATTACTCGGTTG+AGG | 0.532321 | 1_1:-58110916 | None:intergenic |
| GTAATATGATGCTTTCGCTA+AGG | 0.533969 | 1_1:+58110926 | Msa0031380:CDS |
| GGGTGGTTAAACTTGTAACT+AGG | 0.534372 | 1_1:-58111768 | None:intergenic |
| TCCTAATAGATGCCTATCAA+TGG | 0.535772 | 1_1:-58111838 | None:intergenic |
| CTCTGTAATGGACTGGCTGG+GGG | 0.539746 | 1_1:-58111352 | None:intergenic |
| CGTATAACTTGAAGGAACAT+AGG | 0.543430 | 1_1:-58111025 | None:intergenic |
| TGTATCTTCTATTCGCGCAA+CGG | 0.545144 | 1_1:+58111729 | Msa0031380:CDS |
| TGCCGATTCTACATGAAGAC+GGG | 0.548110 | 1_1:+58111411 | Msa0031380:CDS |
| AGCTGAAAATTCCCATTGGG+TGG | 0.554280 | 1_1:-58111785 | None:intergenic |
| TTATAGCTGAAAATTCCCAT+TGG | 0.557394 | 1_1:-58111789 | None:intergenic |
| GAGGATTTGCAAATTGGTCA+AGG | 0.558019 | 1_1:+58110998 | Msa0031380:CDS |
| AACTCCTCGATGGTTAAGAA+TGG | 0.565352 | 1_1:-58108746 | None:intergenic |
| TAGATGCCTATCAATGGTGT+TGG | 0.568057 | 1_1:-58111832 | None:intergenic |
| TTGTAAGTTTGGCAGTCTGT+CGG | 0.568628 | 1_1:+58111437 | Msa0031380:CDS |
| AGATGAGAGAAAGAGAGAGC+AGG | 0.569168 | 1_1:-58107490 | None:intergenic |
| AGCGAAAGCATCATATTACT+CGG | 0.570755 | 1_1:-58110922 | None:intergenic |
| TATTACTCGGTTGAGGATGG+TGG | 0.574101 | 1_1:-58110909 | None:intergenic |
| TTGGAGAATGGACTGCAGTA+GGG | 0.578447 | 1_1:-58110963 | None:intergenic |
| TCATATTACTCGGTTGAGGA+TGG | 0.578783 | 1_1:-58110912 | None:intergenic |
| CTATCAATGGTGTTGGCGGA+AGG | 0.580409 | 1_1:-58111825 | None:intergenic |
| ACTTTACTGAGTGTTTGCAC+TGG | 0.594828 | 1_1:-58107585 | None:intergenic |
| TGAGTCAAGTTCAGAATCTG+AGG | 0.594961 | 1_1:-58107553 | None:intergenic |
| AGGATTTGCAAATTGGTCAA+GGG | 0.595835 | 1_1:+58110999 | Msa0031380:CDS |
| TGTACTCCTCTGTAATGGAC+TGG | 0.596385 | 1_1:-58111359 | None:intergenic |
| TCCTCGATGGTTAAGAATGG+TGG | 0.598215 | 1_1:-58108743 | None:intergenic |
| GATGATGATGACACTGATGA+AGG | 0.603076 | 1_1:+58111956 | Msa0031380:CDS |
| TAGTGCTTCCAACTCCTCGA+TGG | 0.612838 | 1_1:-58108756 | None:intergenic |
| ATGCCGATTCTACATGAAGA+CGG | 0.617432 | 1_1:+58111410 | Msa0031380:CDS |
| TTACAAGTTTAACCACCCAA+TGG | 0.619799 | 1_1:+58111773 | Msa0031380:CDS |
| TACATATTTCCCGATAGACC+CGG | 0.623357 | 1_1:+58111378 | Msa0031380:CDS |
| GTTGGAGAATGGACTGCAGT+AGG | 0.623498 | 1_1:-58110964 | None:intergenic |
| GATGATGACACTGATGAAGG+TGG | 0.674036 | 1_1:+58111959 | Msa0031380:CDS |
| TCTCCAACAACACCAGATCG+AGG | 0.683122 | 1_1:+58110979 | Msa0031380:CDS |
| CGCGAATAGAAGATACACAA+AGG | 0.683716 | 1_1:-58111723 | None:intergenic |
| CCCCAGCCAGTCCATTACAG+AGG | 0.698534 | 1_1:+58111353 | Msa0031380:CDS |
| ACCACCATTCTTAACCATCG+AGG | 0.728140 | 1_1:+58108742 | Msa0031380:CDS |
| GAGTTGGAAGCACTACACTG+CGG | 0.788406 | 1_1:+58108764 | Msa0031380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGATTTTAATTAAAGAAA+TGG | + | chr1_1:58108905-58108924 | Msa0031380:intron | 10.0% |
| !!! | ATATTTTAATATATAGATCA+AGG | - | chr1_1:58109408-58109427 | None:intergenic | 10.0% |
| !!! | AATTTTATTACTATTTACAT+GGG | - | chr1_1:58109630-58109649 | None:intergenic | 10.0% |
| !!! | TATTTTTAAAAAATTGTGTT+TGG | - | chr1_1:58109713-58109732 | None:intergenic | 10.0% |
| !!! | AAATTAAATAATATTTTGCA+GGG | + | chr1_1:58111298-58111317 | Msa0031380:intron | 10.0% |
| !!! | AAGATTTTAGTTACAAATTA+TGG | - | chr1_1:58108323-58108342 | None:intergenic | 15.0% |
| !! | TTGTAACTAAAATCTTATTA+TGG | + | chr1_1:58108327-58108346 | Msa0031380:intron | 15.0% |
| !!! | ACTTTATTTTTTGAGTTTAA+AGG | - | chr1_1:58109381-58109400 | None:intergenic | 15.0% |
| !!! | CAATTTTATTACTATTTACA+TGG | - | chr1_1:58109631-58109650 | None:intergenic | 15.0% |
| !! | TAAATAATTGTCATATTCAT+GGG | - | chr1_1:58109690-58109709 | None:intergenic | 15.0% |
| !! | TGAACAAATGTTAAATATTT+AGG | - | chr1_1:58110317-58110336 | None:intergenic | 15.0% |
| !! | TTAGATATATAAATTTCTGT+TGG | + | chr1_1:58110757-58110776 | Msa0031380:intron | 15.0% |
| !!! | GAAATTAAATAATATTTTGC+AGG | + | chr1_1:58111297-58111316 | Msa0031380:intron | 15.0% |
| !!! | TTTTCCAACAATTTTTCAAT+AGG | + | chr1_1:58107859-58107878 | Msa0031380:intron | 20.0% |
| !! | AGCAAATGAAATATGATATA+AGG | + | chr1_1:58107931-58107950 | Msa0031380:intron | 20.0% |
| !! | TGAAATATGATATAAGGTTT+AGG | + | chr1_1:58107937-58107956 | Msa0031380:intron | 20.0% |
| !! | GTAAAATTGTATTATTTGCA+CGG | + | chr1_1:58108015-58108034 | Msa0031380:intron | 20.0% |
| !! | TAAAGAAATGGAAACATAAA+TGG | + | chr1_1:58108917-58108936 | Msa0031380:intron | 20.0% |
| !!! | ATGAGATGTTTGATTTTAAT+TGG | + | chr1_1:58109039-58109058 | Msa0031380:intron | 20.0% |
| !!! | ATGTTTGATTTTAATTGGTT+GGG | + | chr1_1:58109044-58109063 | Msa0031380:intron | 20.0% |
| !!! | AATTTCTCTTCAATTTTGTT+CGG | + | chr1_1:58109103-58109122 | Msa0031380:intron | 20.0% |
| !!! | TTATTTTTTGAGTTTAAAGG+TGG | - | chr1_1:58109378-58109397 | None:intergenic | 20.0% |
| !!! | TTTAACTTTGTAACAAACAT+AGG | - | chr1_1:58109511-58109530 | None:intergenic | 20.0% |
| !! | GTAAATAATTGTCATATTCA+TGG | - | chr1_1:58109691-58109710 | None:intergenic | 20.0% |
| !!! | ACAATTTTTTAAAAATACCC+AGG | + | chr1_1:58109716-58109735 | Msa0031380:intron | 20.0% |
| !! | GAAATAACCTTTCTAATAAT+GGG | - | chr1_1:58109867-58109886 | None:intergenic | 20.0% |
| !!! | AAATTTTAACCTTTCTATGT+CGG | + | chr1_1:58109779-58109798 | Msa0031380:intron | 20.0% |
| !! | GAAATAACCTTTCTAATAAT+AGG | + | chr1_1:58109867-58109886 | Msa0031380:intron | 20.0% |
| !!! | ACATTGGTTTTATATTAGAT+TGG | + | chr1_1:58110004-58110023 | Msa0031380:intron | 20.0% |
| !! | AATTCATAATTTATTCCTCT+AGG | + | chr1_1:58110357-58110376 | Msa0031380:intron | 20.0% |
| !!! | GATAATAATTTAAAAGGTGT+TGG | - | chr1_1:58110560-58110579 | None:intergenic | 20.0% |
| !! | GACATCGATAATAATTTAAA+AGG | - | chr1_1:58110566-58110585 | None:intergenic | 20.0% |
| !! | TGATTACTGAAGTAAATTAA+AGG | - | chr1_1:58111218-58111237 | None:intergenic | 20.0% |
| !! | TTAATTTACTTCAGTAATCA+TGG | + | chr1_1:58111218-58111237 | Msa0031380:intron | 20.0% |
| ! | TTGAAGGTGATAAAAACATA+GGG | - | chr1_1:58107637-58107656 | None:intergenic | 25.0% |
| ! | TTTGAAGGTGATAAAAACAT+AGG | - | chr1_1:58107638-58107657 | None:intergenic | 25.0% |
| ! | TAAAATCACCGAAAAATATG+CGG | + | chr1_1:58107665-58107684 | Msa0031380:intron | 25.0% |
| !!! | GTTATTTTCCGCATATTTTT+CGG | - | chr1_1:58107676-58107695 | None:intergenic | 25.0% |
| !!! | GGAAATATCTTTTTCTGAAA+GGG | - | chr1_1:58108268-58108287 | None:intergenic | 25.0% |
| !! | AGGAAATATCTTTTTCTGAA+AGG | - | chr1_1:58108269-58108288 | None:intergenic | 25.0% |
| ! | CATACATTAAATAGTAAGAG+AGG | - | chr1_1:58108289-58108308 | None:intergenic | 25.0% |
| ! | GAAATACTCTAATCCAAATA+TGG | + | chr1_1:58108383-58108402 | Msa0031380:intron | 25.0% |
| !!! | CTCTAGTTTTTTAGTAACAA+CGG | - | chr1_1:58108497-58108516 | None:intergenic | 25.0% |
| ! | TAAAAAGAAGCCATTTATAC+TGG | - | chr1_1:58108653-58108672 | None:intergenic | 25.0% |
| !!! | CAAGTGTTTTAAAGTTGATA+GGG | - | chr1_1:58108688-58108707 | None:intergenic | 25.0% |
| !!! | TCAAGTGTTTTAAAGTTGAT+AGG | - | chr1_1:58108689-58108708 | None:intergenic | 25.0% |
| !!! | TTGAAGATGATGATTTTGAT+TGG | + | chr1_1:58108705-58108724 | Msa0031380:CDS | 25.0% |
| !!! | GTGTCATATTTTTATTGGTT+GGG | - | chr1_1:58108864-58108883 | None:intergenic | 25.0% |
| !!! | TGTGTCATATTTTTATTGGT+TGG | - | chr1_1:58108865-58108884 | None:intergenic | 25.0% |
| !!! | AGCATGTGTCATATTTTTAT+TGG | - | chr1_1:58108869-58108888 | None:intergenic | 25.0% |
| !!! | GATGTTTGATTTTAATTGGT+TGG | + | chr1_1:58109043-58109062 | Msa0031380:intron | 25.0% |
| !!! | TATGTAAAGTTGTTTTGAAC+CGG | - | chr1_1:58109226-58109245 | None:intergenic | 25.0% |
| ! | TATTGAAAACACTAAGAAGT+GGG | + | chr1_1:58109253-58109272 | Msa0031380:intron | 25.0% |
| !!! | TGGGAATAATTTTTTAAACC+AGG | - | chr1_1:58109461-58109480 | None:intergenic | 25.0% |
| ! | TGGTTTAAAAAATTATTCCC+AGG | + | chr1_1:58109460-58109479 | Msa0031380:intron | 25.0% |
| !! | TTCTTTGGGAATAAAATCAT+GGG | - | chr1_1:58109586-58109605 | None:intergenic | 25.0% |
| !! | TTTCTTTGGGAATAAAATCA+TGG | - | chr1_1:58109587-58109606 | None:intergenic | 25.0% |
| ! | GGAAATAACCTTTCTAATAA+TGG | - | chr1_1:58109866-58109885 | None:intergenic | 25.0% |
| !! | TTATTAGAAAGGTTATTTCC+AGG | + | chr1_1:58109752-58109771 | Msa0031380:intron | 25.0% |
| ! | AAAGGTTAAAATTTCATTCC+TGG | - | chr1_1:58109773-58109792 | None:intergenic | 25.0% |
| !!! | AAATTTTAACCGACATAGAA+AGG | - | chr1_1:58109791-58109810 | None:intergenic | 25.0% |
| ! | TGTTTACTCGATCATTAAAT+AGG | + | chr1_1:58109812-58109831 | Msa0031380:intron | 25.0% |
| ! | GTTTACTCGATCATTAAATA+GGG | + | chr1_1:58109813-58109832 | Msa0031380:intron | 25.0% |
| !! | TTATTAGAAAGGTTATTTCC+AGG | - | chr1_1:58109752-58109771 | None:intergenic | 25.0% |
| ! | TAAGATGCCTATTATTAGAA+AGG | - | chr1_1:58109877-58109896 | None:intergenic | 25.0% |
| ! | AAAGCAACATCATACAAATA+AGG | - | chr1_1:58110077-58110096 | None:intergenic | 25.0% |
| ! | AACTTATAAGTCAATTTCAC+CGG | - | chr1_1:58110601-58110620 | None:intergenic | 25.0% |
| ! | GGAAAATATATATAGATGAC+AGG | - | chr1_1:58110674-58110693 | None:intergenic | 25.0% |
| ! | AGAACAAGATCACAAAAATT+TGG | - | chr1_1:58110695-58110714 | None:intergenic | 25.0% |
| !!! | TGCAAATTGGAATTAGTTTT+TGG | + | chr1_1:58111071-58111090 | Msa0031380:intron | 25.0% |
| ! | TATGACTTTACAAGTAGTTA+CGG | - | chr1_1:58111550-58111569 | None:intergenic | 25.0% |
| ! | TTAAAAGTAGAATCTGATAG+AGG | + | chr1_1:58111669-58111688 | Msa0031380:intron | 25.0% |
| TGAAGGTGATAAAAACATAG+GGG | - | chr1_1:58107636-58107655 | None:intergenic | 30.0% | |
| !!! | TGATTTTAGTTCTGGTTTGA+AGG | - | chr1_1:58107653-58107672 | None:intergenic | 30.0% |
| !!! | TTTTTCGGTGATTTTAGTTC+TGG | - | chr1_1:58107661-58107680 | None:intergenic | 30.0% |
| CATTCAACATCTCAACATAT+TGG | + | chr1_1:58107813-58107832 | Msa0031380:intron | 30.0% | |
| CACTCCTATTGAAAAATTGT+TGG | - | chr1_1:58107866-58107885 | None:intergenic | 30.0% | |
| ! | TCATTTGCTCTTTTTCTCAA+TGG | - | chr1_1:58107920-58107939 | None:intergenic | 30.0% |
| GGATTCAAACTTCTAGATTA+AGG | + | chr1_1:58108045-58108064 | Msa0031380:intron | 30.0% | |
| GTAATCTTCATAAGATTCTC+TGG | - | chr1_1:58108110-58108129 | None:intergenic | 30.0% | |
| CTTATGAAGATTACTATCAG+AGG | + | chr1_1:58108116-58108135 | Msa0031380:intron | 30.0% | |
| !!! | TGATGATTTTGATTGGATGT+TGG | + | chr1_1:58108712-58108731 | Msa0031380:CDS | 30.0% |
| AGAAATGGAAACATAAATGG+TGG | + | chr1_1:58108920-58108939 | Msa0031380:intron | 30.0% | |
| !! | GTTTTGTTGGTTAAAGAAAG+TGG | + | chr1_1:58108949-58108968 | Msa0031380:intron | 30.0% |
| ! | CACTTCTTAGTGTTTTCAAT+AGG | - | chr1_1:58109254-58109273 | None:intergenic | 30.0% |
| CTATTGAAAACACTAAGAAG+TGG | + | chr1_1:58109252-58109271 | Msa0031380:intron | 30.0% | |
| TAAAACAAGTGTTTGTTTCC+TGG | + | chr1_1:58109440-58109459 | Msa0031380:intron | 30.0% | |
| TCCTAGGAATTCTTTATTCT+CGG | - | chr1_1:58109544-58109563 | None:intergenic | 30.0% | |
| !!! | GTGGAAGTTATTTTTTTCCT+AGG | - | chr1_1:58109560-58109579 | None:intergenic | 30.0% |
| ! | GATTTTATTCCCAAAGAAAG+TGG | + | chr1_1:58109588-58109607 | Msa0031380:intron | 30.0% |
| !! | GTTTGTGATAGTGGATATAT+GGG | - | chr1_1:58109663-58109682 | None:intergenic | 30.0% |
| !! | TGTTTGTGATAGTGGATATA+TGG | - | chr1_1:58109664-58109683 | None:intergenic | 30.0% |
| TAAGATGCCCATTATTAGAA+AGG | + | chr1_1:58109741-58109760 | Msa0031380:intron | 30.0% | |
| ATCGTATCTTGACATAGAAA+TGG | + | chr1_1:58109964-58109983 | Msa0031380:intron | 30.0% | |
| TCGTATCTTGACATAGAAAT+GGG | + | chr1_1:58109965-58109984 | Msa0031380:intron | 30.0% | |
| TGAAGAATTGAGCAATACAT+TGG | + | chr1_1:58109988-58110007 | Msa0031380:intron | 30.0% | |
| CTGATGTAATATGAACAATC+TGG | - | chr1_1:58110182-58110201 | None:intergenic | 30.0% | |
| TGTTCATATTACATCAGAAC+TGG | + | chr1_1:58110185-58110204 | Msa0031380:intron | 30.0% | |
| ATTCATCTATAAGAACCTAG+AGG | - | chr1_1:58110375-58110394 | None:intergenic | 30.0% | |
| TCTATCACTCAGAATAAGAA+TGG | - | chr1_1:58110408-58110427 | None:intergenic | 30.0% | |
| AAGAATCTTCCATGTTCATT+TGG | + | chr1_1:58110634-58110653 | Msa0031380:intron | 30.0% | |
| !! | TTCATTTGGTAACGAACAAT+TGG | + | chr1_1:58110648-58110667 | Msa0031380:intron | 30.0% |
| TAATATGATGCTTTCGCTAA+GGG | + | chr1_1:58110927-58110946 | Msa0031380:CDS | 30.0% | |
| ! | ATTAAAGGCGTATAACTTGA+AGG | - | chr1_1:58111036-58111055 | None:intergenic | 30.0% |
| TATACGCCTTTAATTATGTC+TGG | + | chr1_1:58111042-58111061 | Msa0031380:intron | 30.0% | |
| ! | TCTGTTCGAATATTGGTTAT+AGG | - | chr1_1:58111167-58111186 | None:intergenic | 30.0% |
| ATGTATACATATTGCAACAC+AGG | - | chr1_1:58111267-58111286 | None:intergenic | 30.0% | |
| ! | TAATATTTTGCAGGGTCAAA+TGG | + | chr1_1:58111306-58111325 | Msa0031380:intron | 30.0% |
| ! | AATATTTTGCAGGGTCAAAT+GGG | + | chr1_1:58111307-58111326 | Msa0031380:intron | 30.0% |
| AAATATGTACTCCTCTGTAA+TGG | - | chr1_1:58111367-58111386 | None:intergenic | 30.0% | |
| TATAGCTGAAAATTCCCATT+GGG | - | chr1_1:58111791-58111810 | None:intergenic | 30.0% | |
| TTATAGCTGAAAATTCCCAT+TGG | - | chr1_1:58111792-58111811 | None:intergenic | 30.0% | |
| GCATCTATTAGGATATTTGT+TGG | + | chr1_1:58111848-58111867 | Msa0031380:CDS | 30.0% | |
| GAAGGTGATAAAAACATAGG+GGG | - | chr1_1:58107635-58107654 | None:intergenic | 35.0% | |
| GTTGAAATAGCTGAAGCTAA+AGG | - | chr1_1:58107750-58107769 | None:intergenic | 35.0% | |
| CATTCTTCAAGGTGTACAAA+AGG | - | chr1_1:58107894-58107913 | None:intergenic | 35.0% | |
| AGGTTTAGGTAAAGATTCGT+TGG | + | chr1_1:58107951-58107970 | Msa0031380:intron | 35.0% | |
| TATTATTTGCACGGTGTCTT+TGG | + | chr1_1:58108024-58108043 | Msa0031380:intron | 35.0% | |
| ACTTCTAGATTAAGGTTCGT+TGG | + | chr1_1:58108053-58108072 | Msa0031380:intron | 35.0% | |
| TCTTCATAAGATTCTCTGGA+AGG | - | chr1_1:58108106-58108125 | None:intergenic | 35.0% | |
| TCGATAAAAAGATGACCTGT+TGG | + | chr1_1:58108148-58108167 | Msa0031380:intron | 35.0% | |
| CTTGAATTACCTACGAGTAT+GGG | - | chr1_1:58108185-58108204 | None:intergenic | 35.0% | |
| ACTTGAATTACCTACGAGTA+TGG | - | chr1_1:58108186-58108205 | None:intergenic | 35.0% | |
| ! | CGTAGGTAATTCAAGTTTGA+AGG | + | chr1_1:58108190-58108209 | Msa0031380:intron | 35.0% |
| TCGATATTTCACTATGTGTG+CGG | - | chr1_1:58108244-58108263 | None:intergenic | 35.0% | |
| CTCTAATCCAAATATGGTGT+AGG | + | chr1_1:58108389-58108408 | Msa0031380:intron | 35.0% | |
| TCTTTCTCCTACACCATATT+TGG | - | chr1_1:58108399-58108418 | None:intergenic | 35.0% | |
| CAACGGAACATCTATTCATA+GGG | - | chr1_1:58108480-58108499 | None:intergenic | 35.0% | |
| ACAACGGAACATCTATTCAT+AGG | - | chr1_1:58108481-58108500 | None:intergenic | 35.0% | |
| CCATTAATACAAAACCAGAG+TGG | - | chr1_1:58108626-58108645 | None:intergenic | 35.0% | |
| !!! | CCACTCTGGTTTTGTATTAA+TGG | + | chr1_1:58108623-58108642 | Msa0031380:intron | 35.0% |
| ! | TAATGGCTTGCCAGTATAAA+TGG | + | chr1_1:58108640-58108659 | Msa0031380:intron | 35.0% |
| !!! | TGATTTTGATTGGATGTTGG+AGG | + | chr1_1:58108715-58108734 | Msa0031380:CDS | 35.0% |
| GGGTGTAAGAATAATCTCTT+AGG | - | chr1_1:58108844-58108863 | None:intergenic | 35.0% | |
| AATGGAAACATAAATGGTGG+TGG | + | chr1_1:58108923-58108942 | Msa0031380:intron | 35.0% | |
| ATGGAAACATAAATGGTGGT+GGG | + | chr1_1:58108924-58108943 | Msa0031380:intron | 35.0% | |
| ! | CTCTTCAATTTTGTTCGGTT+TGG | + | chr1_1:58109108-58109127 | Msa0031380:intron | 35.0% |
| TTATGAGTTCAAGGGTTCAT+TGG | - | chr1_1:58109166-58109185 | None:intergenic | 35.0% | |
| CAACAAGGTTATGAGTTCAA+GGG | - | chr1_1:58109174-58109193 | None:intergenic | 35.0% | |
| !! | ACAGTTTCGAGTGTTTTCAT+TGG | + | chr1_1:58109335-58109354 | Msa0031380:intron | 35.0% |
| AAAAATTATTCCCAGGAACG+TGG | + | chr1_1:58109467-58109486 | Msa0031380:intron | 35.0% | |
| CCTAGGAATTCTTTATTCTC+GGG | - | chr1_1:58109543-58109562 | None:intergenic | 35.0% | |
| GGAATAAAATCATGGGTAAG+TGG | - | chr1_1:58109579-58109598 | None:intergenic | 35.0% | |
| ATGGGAATTGTTTGTGATAG+TGG | - | chr1_1:58109672-58109691 | None:intergenic | 35.0% | |
| !! | ATAATGGGCATCTTATTCCT+GGG | - | chr1_1:58109736-58109755 | None:intergenic | 35.0% |
| !! | AATAATGGGCATCTTATTCC+TGG | - | chr1_1:58109737-58109756 | None:intergenic | 35.0% |
| ! | TAAATAGGGCGTTTGTTTGA+CGG | + | chr1_1:58109827-58109846 | Msa0031380:intron | 35.0% |
| GACGGTTAAAATTTCATTCC+TGG | + | chr1_1:58109845-58109864 | Msa0031380:intron | 35.0% | |
| ATTGAGGTCAAGTGAAACAA+TGG | + | chr1_1:58110124-58110143 | Msa0031380:intron | 35.0% | |
| TTTAACCATCCTCGTGATAT+AGG | + | chr1_1:58110236-58110255 | Msa0031380:intron | 35.0% | |
| TGTTCGTTACCAAATGAACA+TGG | - | chr1_1:58110646-58110665 | None:intergenic | 35.0% | |
| ! | TCTGAATTTTCCTGCTTCTT+TGG | + | chr1_1:58110818-58110837 | Msa0031380:intron | 35.0% |
| TGCAGCTATTATTTGAGAAC+AGG | + | chr1_1:58110856-58110875 | Msa0031380:CDS | 35.0% | |
| AGAACAGGAGAATGCAAATA+TGG | + | chr1_1:58110871-58110890 | Msa0031380:CDS | 35.0% | |
| GAACAGGAGAATGCAAATAT+GGG | + | chr1_1:58110872-58110891 | Msa0031380:CDS | 35.0% | |
| !! | AGCGAAAGCATCATATTACT+CGG | - | chr1_1:58110925-58110944 | None:intergenic | 35.0% |
| GTAATATGATGCTTTCGCTA+AGG | + | chr1_1:58110926-58110945 | Msa0031380:CDS | 35.0% | |
| AGGATTTGCAAATTGGTCAA+GGG | + | chr1_1:58110999-58111018 | Msa0031380:CDS | 35.0% | |
| CGTATAACTTGAAGGAACAT+AGG | - | chr1_1:58111028-58111047 | None:intergenic | 35.0% | |
| CTCCATCCAGACATAATTAA+AGG | - | chr1_1:58111051-58111070 | None:intergenic | 35.0% | |
| CACTGTATCTGTTCGAATAT+TGG | - | chr1_1:58111174-58111193 | None:intergenic | 35.0% | |
| ACTTCAGTAATCATGGAACA+TGG | + | chr1_1:58111225-58111244 | Msa0031380:intron | 35.0% | |
| TTACAAGTTTAACCACCCAA+TGG | + | chr1_1:58111773-58111792 | Msa0031380:CDS | 35.0% | |
| TACAAGTTTAACCACCCAAT+GGG | + | chr1_1:58111774-58111793 | Msa0031380:CDS | 35.0% | |
| ACCATTGATAGGCATCTATT+AGG | + | chr1_1:58111837-58111856 | Msa0031380:CDS | 35.0% | |
| TCCTAATAGATGCCTATCAA+TGG | - | chr1_1:58111841-58111860 | None:intergenic | 35.0% | |
| TCATCATCATCATCATCAGA+AGG | - | chr1_1:58111947-58111966 | None:intergenic | 35.0% | |
| TGAGTCAAGTTCAGAATCTG+AGG | - | chr1_1:58107556-58107575 | None:intergenic | 40.0% | |
| ACTTTACTGAGTGTTTGCAC+TGG | - | chr1_1:58107588-58107607 | None:intergenic | 40.0% | |
| GAAAATGTCAATGCCAATGC+GGG | - | chr1_1:58107844-58107863 | None:intergenic | 40.0% | |
| GGAAAATGTCAATGCCAATG+CGG | - | chr1_1:58107845-58107864 | None:intergenic | 40.0% | |
| CTCAATGGCTACATTCTTCA+AGG | - | chr1_1:58107905-58107924 | None:intergenic | 40.0% | |
| TGGGAATATGAAGATCCAAC+AGG | - | chr1_1:58108166-58108185 | None:intergenic | 40.0% | |
| CTTCATATTCCCATACTCGT+AGG | + | chr1_1:58108173-58108192 | Msa0031380:intron | 40.0% | |
| AACTCCTCGATGGTTAAGAA+TGG | - | chr1_1:58108749-58108768 | None:intergenic | 40.0% | |
| ATTCTTAACCATCGAGGAGT+TGG | + | chr1_1:58108748-58108767 | Msa0031380:CDS | 40.0% | |
| CCAACAAGGTTATGAGTTCA+AGG | - | chr1_1:58109175-58109194 | None:intergenic | 40.0% | |
| CCTTGAACTCATAACCTTGT+TGG | + | chr1_1:58109172-58109191 | Msa0031380:intron | 40.0% | |
| !! | TCATAACCTTGTTGGTTCGA+TGG | + | chr1_1:58109180-58109199 | Msa0031380:intron | 40.0% |
| !!! | CTGTCCAGCTTTTAAAACAC+CGG | + | chr1_1:58109204-58109223 | Msa0031380:intron | 40.0% |
| !!! | TGAACCGGTGTTTTAAAAGC+TGG | - | chr1_1:58109211-58109230 | None:intergenic | 40.0% |
| AAACACTAAGAAGTGGGAGA+AGG | + | chr1_1:58109259-58109278 | Msa0031380:intron | 40.0% | |
| GTTTAAAGGTGGTGAAACGT+CGG | - | chr1_1:58109367-58109386 | None:intergenic | 40.0% | |
| CCCGAGAATAAAGAATTCCT+AGG | + | chr1_1:58109540-58109559 | Msa0031380:intron | 40.0% | |
| TTATTCCCAAAGAAAGTGGC+TGG | + | chr1_1:58109592-58109611 | Msa0031380:intron | 40.0% | |
| TATTCCCAAAGAAAGTGGCT+GGG | + | chr1_1:58109593-58109612 | Msa0031380:intron | 40.0% | |
| ! | TATTCCCAGCCACTTTCTTT+GGG | - | chr1_1:58109600-58109619 | None:intergenic | 40.0% |
| ! | TTATTCCCAGCCACTTTCTT+TGG | - | chr1_1:58109601-58109620 | None:intergenic | 40.0% |
| CACTGTGGATGATGAAATTG+AGG | + | chr1_1:58110108-58110127 | Msa0031380:intron | 40.0% | |
| ! | TATGAACAATCTGGTTCACC+TGG | - | chr1_1:58110173-58110192 | None:intergenic | 40.0% |
| !! | AGAACTGGCCTTTGTAGATT+CGG | + | chr1_1:58110200-58110219 | Msa0031380:intron | 40.0% |
| AGGATGGTTAAATCGACATG+TGG | - | chr1_1:58110228-58110247 | None:intergenic | 40.0% | |
| ACAACTTCAATCCAAGGTGT+CGG | - | chr1_1:58110503-58110522 | None:intergenic | 40.0% | |
| CTAGACACAACTTCAATCCA+AGG | - | chr1_1:58110509-58110528 | None:intergenic | 40.0% | |
| ATTTCACCGGTAGTGATACT+TGG | - | chr1_1:58110588-58110607 | None:intergenic | 40.0% | |
| TCATATTACTCGGTTGAGGA+TGG | - | chr1_1:58110915-58110934 | None:intergenic | 40.0% | |
| AGCATCATATTACTCGGTTG+AGG | - | chr1_1:58110919-58110938 | None:intergenic | 40.0% | |
| CAATTTGCAAATCCTCGATC+TGG | - | chr1_1:58110994-58111013 | None:intergenic | 40.0% | |
| CAGATCGAGGATTTGCAAAT+TGG | + | chr1_1:58110992-58111011 | Msa0031380:CDS | 40.0% | |
| GAGGATTTGCAAATTGGTCA+AGG | + | chr1_1:58110998-58111017 | Msa0031380:CDS | 40.0% | |
| CGCCTTTAATTATGTCTGGA+TGG | + | chr1_1:58111046-58111065 | Msa0031380:intron | 40.0% | |
| TACATATTTCCCGATAGACC+CGG | + | chr1_1:58111378-58111397 | Msa0031380:CDS | 40.0% | |
| TTCATGTAGAATCGGCATTC+AGG | - | chr1_1:58111408-58111427 | None:intergenic | 40.0% | |
| !! | ATGCCGATTCTACATGAAGA+CGG | + | chr1_1:58111410-58111429 | Msa0031380:CDS | 40.0% |
| AAGACGGGAGATTGTAAGTT+TGG | + | chr1_1:58111426-58111445 | Msa0031380:CDS | 40.0% | |
| TTGTAAGTTTGGCAGTCTGT+CGG | + | chr1_1:58111437-58111456 | Msa0031380:CDS | 40.0% | |
| CTACCACTCGCGTAATTAAT+AGG | + | chr1_1:58111462-58111481 | Msa0031380:intron | 40.0% | |
| TTGCCTATTAATTACGCGAG+TGG | - | chr1_1:58111468-58111487 | None:intergenic | 40.0% | |
| AACTCACAGGACATAAAGGA+AGG | - | chr1_1:58111527-58111546 | None:intergenic | 40.0% | |
| CGCGAATAGAAGATACACAA+AGG | - | chr1_1:58111726-58111745 | None:intergenic | 40.0% | |
| TGTATCTTCTATTCGCGCAA+CGG | + | chr1_1:58111729-58111748 | Msa0031380:CDS | 40.0% | |
| GGGTGGTTAAACTTGTAACT+AGG | - | chr1_1:58111771-58111790 | None:intergenic | 40.0% | |
| TAGATGCCTATCAATGGTGT+TGG | - | chr1_1:58111835-58111854 | None:intergenic | 40.0% | |
| CTCTGATATTGAAAGCTCCT+AGG | - | chr1_1:58111912-58111931 | None:intergenic | 40.0% | |
| ! | GATGATGATGACACTGATGA+AGG | + | chr1_1:58111956-58111975 | Msa0031380:CDS | 40.0% |
| AGATGAGAGAAAGAGAGAGC+AGG | - | chr1_1:58107493-58107512 | None:intergenic | 45.0% | |
| CATAGGGGGTTGAATTGTGT+TGG | - | chr1_1:58107621-58107640 | None:intergenic | 45.0% | |
| TTCGCATCTAAATGCCACTC+TGG | + | chr1_1:58108609-58108628 | Msa0031380:intron | 45.0% | |
| ACCACCATTCTTAACCATCG+AGG | + | chr1_1:58108742-58108761 | Msa0031380:CDS | 45.0% | |
| TCCTCGATGGTTAAGAATGG+TGG | - | chr1_1:58108746-58108765 | None:intergenic | 45.0% | |
| !! | GAAACATAAATGGTGGTGGG+TGG | + | chr1_1:58108927-58108946 | Msa0031380:intron | 45.0% |
| !! | TTGGTGATGCAGTTCAACCA+AGG | + | chr1_1:58109127-58109146 | Msa0031380:intron | 45.0% |
| TTGGTTGAACCATGGTTCCT+TGG | - | chr1_1:58109147-58109166 | None:intergenic | 45.0% | |
| ! | AGGGTTCATTGGTTGAACCA+TGG | - | chr1_1:58109155-58109174 | None:intergenic | 45.0% |
| AATTATTCCCAGGAACGTGG+AGG | + | chr1_1:58109470-58109489 | Msa0031380:intron | 45.0% | |
| !! | CTTTTGTTTCACGCTCACTG+TGG | + | chr1_1:58110093-58110112 | Msa0031380:intron | 45.0% |
| GAATCTTATCCACAGCATCC+AGG | + | chr1_1:58110152-58110171 | Msa0031380:intron | 45.0% | |
| ! | ATGTGGCACCGAATCTACAA+AGG | - | chr1_1:58110211-58110230 | None:intergenic | 45.0% |
| AGCTTCCTATATCACGAGGA+TGG | - | chr1_1:58110244-58110263 | None:intergenic | 45.0% | |
| ATCCTCGTGATATAGGAAGC+TGG | + | chr1_1:58110243-58110262 | Msa0031380:intron | 45.0% | |
| TACCAGCTTCCTATATCACG+AGG | - | chr1_1:58110248-58110267 | None:intergenic | 45.0% | |
| CGATGTCCAAGTATCACTAC+CGG | + | chr1_1:58110579-58110598 | Msa0031380:intron | 45.0% | |
| TGTGATCTTGTTCTTGCACG+CGG | + | chr1_1:58110701-58110720 | Msa0031380:intron | 45.0% | |
| TATTACTCGGTTGAGGATGG+TGG | - | chr1_1:58110912-58110931 | None:intergenic | 45.0% | |
| !! | TTGGAGAATGGACTGCAGTA+GGG | - | chr1_1:58110966-58110985 | None:intergenic | 45.0% |
| !! | GATCTGGTGTTGTTGGAGAA+TGG | - | chr1_1:58110978-58110997 | None:intergenic | 45.0% |
| !! | AATCCTCGATCTGGTGTTGT+TGG | - | chr1_1:58110985-58111004 | None:intergenic | 45.0% |
| TGTCTGGATGGAGTGCAAAT+TGG | + | chr1_1:58111058-58111077 | Msa0031380:intron | 45.0% | |
| GAACAGATACAGTGCAGCAT+TGG | + | chr1_1:58111180-58111199 | Msa0031380:intron | 45.0% | |
| !! | TGTACTCCTCTGTAATGGAC+TGG | - | chr1_1:58111362-58111381 | None:intergenic | 45.0% |
| !! | TGCCGATTCTACATGAAGAC+GGG | + | chr1_1:58111411-58111430 | Msa0031380:CDS | 45.0% |
| CTCCCGTCTTCATGTAGAAT+CGG | - | chr1_1:58111416-58111435 | None:intergenic | 45.0% | |
| ACGGAACTCACAGGACATAA+AGG | - | chr1_1:58111531-58111550 | None:intergenic | 45.0% | |
| CAAGTAGTTACGGAACTCAC+AGG | - | chr1_1:58111540-58111559 | None:intergenic | 45.0% | |
| TATCCAATCCCATCTCCTAC+AGG | + | chr1_1:58111695-58111714 | Msa0031380:intron | 45.0% | |
| TACACAAAGGCTCTTCCTGT+AGG | - | chr1_1:58111713-58111732 | None:intergenic | 45.0% | |
| AGCTGAAAATTCCCATTGGG+TGG | - | chr1_1:58111788-58111807 | None:intergenic | 45.0% | |
| ! | ATGCCTATCAATGGTGTTGG+CGG | - | chr1_1:58111832-58111851 | None:intergenic | 45.0% |
| GATGATGACACTGATGAAGG+TGG | + | chr1_1:58111959-58111978 | Msa0031380:CDS | 45.0% | |
| TAGTGCTTCCAACTCCTCGA+TGG | - | chr1_1:58108759-58108778 | None:intergenic | 50.0% | |
| !! | GAGTTGGAAGCACTACACTG+CGG | + | chr1_1:58108764-58108783 | Msa0031380:CDS | 50.0% |
| !!! | ATGGTGGTGGGTGGTTTTGT+TGG | + | chr1_1:58108936-58108955 | Msa0031380:intron | 50.0% |
| GCAGTTCAACCAAGGAACCA+TGG | + | chr1_1:58109135-58109154 | Msa0031380:intron | 50.0% | |
| GACAGACCATCGAACCAACA+AGG | - | chr1_1:58109189-58109208 | None:intergenic | 50.0% | |
| CACTAAGAAGTGGGAGAAGG+CGG | + | chr1_1:58109262-58109281 | Msa0031380:intron | 50.0% | |
| ATTCCAACCTCCACGTTCCT+GGG | - | chr1_1:58109480-58109499 | None:intergenic | 50.0% | |
| AATTCCAACCTCCACGTTCC+TGG | - | chr1_1:58109481-58109500 | None:intergenic | 50.0% | |
| CCTCATTCTGCCAAAGAAGC+AGG | - | chr1_1:58110831-58110850 | None:intergenic | 50.0% | |
| CCTGCTTCTTTGGCAGAATG+AGG | + | chr1_1:58110828-58110847 | Msa0031380:intron | 50.0% | |
| TGGACTGCAGTAGGGTAAAG+AGG | - | chr1_1:58110958-58110977 | None:intergenic | 50.0% | |
| !! | GTTGGAGAATGGACTGCAGT+AGG | - | chr1_1:58110967-58110986 | None:intergenic | 50.0% |
| TCTCCAACAACACCAGATCG+AGG | + | chr1_1:58110979-58110998 | Msa0031380:CDS | 50.0% | |
| !! | TCCTCTGTAATGGACTGGCT+GGG | - | chr1_1:58111357-58111376 | None:intergenic | 50.0% |
| TCAAGAGAGTCAGGAGGATC+AGG | - | chr1_1:58111494-58111513 | None:intergenic | 50.0% | |
| TGAGACTCAAGAGAGTCAGG+AGG | - | chr1_1:58111500-58111519 | None:intergenic | 50.0% | |
| CTGTGAGACTCAAGAGAGTC+AGG | - | chr1_1:58111503-58111522 | None:intergenic | 50.0% | |
| CTGACTCTCTTGAGTCTCAC+AGG | + | chr1_1:58111501-58111520 | Msa0031380:intron | 50.0% | |
| CTTCCTGTAGGAGATGGGAT+TGG | - | chr1_1:58111701-58111720 | None:intergenic | 50.0% | |
| AGGCTCTTCCTGTAGGAGAT+GGG | - | chr1_1:58111706-58111725 | None:intergenic | 50.0% | |
| AAGGCTCTTCCTGTAGGAGA+TGG | - | chr1_1:58111707-58111726 | None:intergenic | 50.0% | |
| CGCAACGGCATATGCAGATT+TGG | + | chr1_1:58111744-58111763 | Msa0031380:CDS | 50.0% | |
| !! | CTATCAATGGTGTTGGCGGA+AGG | - | chr1_1:58111828-58111847 | None:intergenic | 50.0% |
| CTTCCGCCAACACCATTGAT+AGG | + | chr1_1:58111826-58111845 | Msa0031380:CDS | 50.0% | |
| AGTCAAGTTCAGCGAAGCCT+AGG | + | chr1_1:58111892-58111911 | Msa0031380:CDS | 50.0% | |
| CATATTGGCGTTGCCCGCAT+TGG | + | chr1_1:58107828-58107847 | Msa0031380:intron | 55.0% | |
| !! | GGAAGCACTACACTGCGGTT+TGG | + | chr1_1:58108769-58108788 | Msa0031380:CDS | 55.0% |
| ATTCCCAGGAACGTGGAGGT+TGG | + | chr1_1:58109474-58109493 | Msa0031380:intron | 55.0% | |
| ! | TCTGGTTCACCTGGATGCTG+TGG | - | chr1_1:58110164-58110183 | None:intergenic | 55.0% |
| !! | CCAAGGTGTCGGTGCTACAT+AGG | - | chr1_1:58110492-58110511 | None:intergenic | 55.0% |
| !! | CCTATGTAGCACCGACACCT+TGG | + | chr1_1:58110489-58110508 | Msa0031380:intron | 55.0% |
| !! | CTCTGTAATGGACTGGCTGG+GGG | - | chr1_1:58111355-58111374 | None:intergenic | 55.0% |
| !! | CCTCTGTAATGGACTGGCTG+GGG | - | chr1_1:58111356-58111375 | None:intergenic | 55.0% |
| !! | CTCCTCTGTAATGGACTGGC+TGG | - | chr1_1:58111358-58111377 | None:intergenic | 55.0% |
| TTCAGGCTGACCGGGTCTAT+CGG | - | chr1_1:58111391-58111410 | None:intergenic | 55.0% | |
| AATCGGCATTCAGGCTGACC+GGG | - | chr1_1:58111399-58111418 | None:intergenic | 55.0% | |
| GAATCGGCATTCAGGCTGAC+CGG | - | chr1_1:58111400-58111419 | None:intergenic | 55.0% | |
| CCCCAGCCAGTCCATTACAG+AGG | + | chr1_1:58111353-58111372 | Msa0031380:CDS | 60.0% | |
| TCAGGCTGACCGGGTCTATC+GGG | - | chr1_1:58111390-58111409 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 58107478 | 58112001 | 58107478 | ID=Msa0031380;Name=Msa0031380 |
| chr1_1 | mRNA | 58107478 | 58112001 | 58107478 | ID=Msa0031380-mRNA-1;Parent=Msa0031380;Name=Msa0031380-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|0.8|1|1|5|0|286 |
| chr1_1 | exon | 58107478 | 58107600 | 58107478 | ID=Msa0031380-mRNA-1:exon:17707;Parent=Msa0031380-mRNA-1 |
| chr1_1 | exon | 58108674 | 58108790 | 58108674 | ID=Msa0031380-mRNA-1:exon:17708;Parent=Msa0031380-mRNA-1 |
| chr1_1 | exon | 58110844 | 58111039 | 58110844 | ID=Msa0031380-mRNA-1:exon:17709;Parent=Msa0031380-mRNA-1 |
| chr1_1 | exon | 58111319 | 58111458 | 58111319 | ID=Msa0031380-mRNA-1:exon:17710;Parent=Msa0031380-mRNA-1 |
| chr1_1 | exon | 58111717 | 58112001 | 58111717 | ID=Msa0031380-mRNA-1:exon:17711;Parent=Msa0031380-mRNA-1 |
| chr1_1 | CDS | 58107478 | 58107600 | 58107478 | ID=Msa0031380-mRNA-1:cds;Parent=Msa0031380-mRNA-1 |
| chr1_1 | CDS | 58108674 | 58108790 | 58108674 | ID=Msa0031380-mRNA-1:cds;Parent=Msa0031380-mRNA-1 |
| chr1_1 | CDS | 58110844 | 58111039 | 58110844 | ID=Msa0031380-mRNA-1:cds;Parent=Msa0031380-mRNA-1 |
| chr1_1 | CDS | 58111319 | 58111458 | 58111319 | ID=Msa0031380-mRNA-1:cds;Parent=Msa0031380-mRNA-1 |
| chr1_1 | CDS | 58111717 | 58112001 | 58111717 | ID=Msa0031380-mRNA-1:cds;Parent=Msa0031380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
