AlfalfaGEDB | Msa0031840

M. sativa cultivar zhongmu-4 / Msa0031840

KEGG: K14509
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532
PFAM: PF01590.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0031840	XP_003590928.2	98.950	762	8	0	1	762	1	762	0.0	1554

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0031840	sp\|Q9ZTP3\|EIN4_ARATH	59.546	749	288	7	23	760	22	766	0.0	867

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0031840	G7I672	98.950	762	8	0	1	762	1	762	0.0	1554

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TFs/TRs:

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Gene ID	Type	Classification
Msa0031840	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0031840	MtrunA17_Chr1g0190021	98.950	762	8	0	1	762	1	762	0.0	1554
Msa0031840	MtrunA17_Chr7g0274831	71.255	741	206	6	24	762	30	765	0.0	1085
Msa0031840	MtrunA17_Chr1g0186431	55.614	766	322	8	1	758	2	757	0.0	860
Msa0031840	MtrunA17_Chr1g0168161	51.915	757	347	9	8	755	9	757	0.0	770
Msa0031840	MtrunA17_Chr4g0013831	38.286	747	431	17	26	757	3	734	4.10e-160	482
Msa0031840	MtrunA17_Chr7g0269631	38.050	636	361	15	26	643	3	623	8.58e-112	353
Msa0031840	MtrunA17_Chr4g0077091	56.164	73	31	1	687	758	1	73	1.04e-19	84.0
Msa0031840	MtrunA17_Chr8g0377481	33.835	133	78	3	634	758	840	970	4.50e-16	82.8
Msa0031840	MtrunA17_Chr8g0377481	25.595	168	125	0	350	517	371	538	2.61e-12	70.9
Msa0031840	MtrunA17_Chr8g0371601	23.544	395	246	15	360	715	460	837	1.95e-13	74.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0031840	AT3G04580.2	59.546	749	288	7	23	760	22	766	0.0	867
Msa0031840	AT3G04580.1	59.546	749	288	7	23	760	22	766	0.0	867
Msa0031840	AT3G23150.1	50.824	789	344	14	1	762	2	773	0.0	732
Msa0031840	AT3G23150.2	52.073	603	259	10	1	587	2	590	0.0	578
Msa0031840	AT1G04310.1	46.698	636	306	10	1	617	2	623	1.04e-178	526
Msa0031840	AT1G04310.2	46.698	636	306	10	1	617	2	623	1.04e-178	526
Msa0031840	AT1G66340.1	40.701	742	410	15	28	755	4	729	6.89e-172	512
Msa0031840	AT2G40940.1	37.914	604	345	15	29	616	3	592	6.10e-112	353
Msa0031840	AT5G35750.1	23.611	360	226	8	351	666	567	921	3.52e-17	87.0
Msa0031840	AT2G01830.5	26.136	176	130	0	350	525	440	615	2.59e-15	80.9

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Find 208 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTACGAAAGGAAAG+TGG	0.540084	1_1:-58656127	None:intergenic
AAAATAGCTTATAGAGAACT+TGG	0.454392	1_1:+58659989	Msa0031840:three_prime_UTR
AAACTAGGAGCTGCGAGTAG+TGG	0.589890	1_1:+58657186	Msa0031840:CDS
AAAGAAGCTACTCGAGAGGC+TGG	0.477400	1_1:+58659613	Msa0031840:CDS
AAAGATTACGAAAGGAAAGT+GGG	0.622654	1_1:-58656126	None:intergenic
AAATTCGAAACATGAAGCAT+CGG	0.568829	1_1:-58657255	None:intergenic
AACACATCAGGGTCAATCAC+AGG	0.564986	1_1:-58657117	None:intergenic
AACATGGAATGTAGAAGGAA+AGG	0.568366	1_1:-58657741	None:intergenic
AACATGTATCTTTCAAGCGA+TGG	0.555713	1_1:-58659506	None:intergenic
AACTATCTCCATCTCTGGAG+CGG	0.592322	1_1:-58657361	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAACATAGTACTTTGACA+AGG	+	chr1_1:58656051-58656070	Msa0031840:five_prime_UTR	30.0%
AAAGATTACGAAAGGAAAGT+GGG	-	chr1_1:58656129-58656148	None:intergenic	30.0%
AAAAGATTACGAAAGGAAAG+TGG	-	chr1_1:58656130-58656149	None:intergenic	30.0%
AAAGGGAAAAAGATTACGAA+AGG	-	chr1_1:58656137-58656156	None:intergenic	30.0%
CGAATAAGACAATAGGAAAA+GGG	-	chr1_1:58656154-58656173	None:intergenic	30.0%
ACAAAGTAAAGAAGCTCAAT+TGG	-	chr1_1:58656595-58656614	None:intergenic	30.0%
TGAAGAAACAGCAATTTGAA+AGG	-	chr1_1:58656634-58656653	None:intergenic	30.0%
GAAAGCAATAGTTGAAAAGA+AGG	-	chr1_1:58656724-58656743	None:intergenic	30.0%
TGGGATTATGAAGAAACAAA+AGG	+	chr1_1:58656885-58656904	Msa0031840:CDS	30.0%
TCATGAATTGAAATCGGATT+CGG	+	chr1_1:58657068-58657087	Msa0031840:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	58656019	58660331	58656019	ID=Msa0031840;Name=Msa0031840
chr1_1	mRNA	58656019	58660331	58656019	ID=Msa0031840-mRNA-1;Parent=Msa0031840;Name=Msa0031840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=393\|1\|1\|1\|1\|1\|2\|379\|762
chr1_1	exon	58656019	58658169	58656019	ID=Msa0031840-mRNA-1:exon:17923;Parent=Msa0031840-mRNA-1
chr1_1	exon	58659422	58660331	58659422	ID=Msa0031840-mRNA-1:exon:17924;Parent=Msa0031840-mRNA-1
chr1_1	five_prime_UTR	58656019	58656411	58656019	ID=Msa0031840-mRNA-1:five_prime_utr;Parent=Msa0031840-mRNA-1
chr1_1	CDS	58656412	58658169	58656412	ID=Msa0031840-mRNA-1:cds;Parent=Msa0031840-mRNA-1
chr1_1	CDS	58659422	58659952	58659422	ID=Msa0031840-mRNA-1:cds;Parent=Msa0031840-mRNA-1
chr1_1	three_prime_UTR	58659953	58660331	58659953	ID=Msa0031840-mRNA-1:three_prime_utr;Parent=Msa0031840-mRNA-1

Gene Sequence

>Msa0031840

ATGAAAACTCTTATTCTGTTGTTACTGCTTTTTAACCTTACTCTTTATGCTTCTGCTACTGATTCTGATGAATATGACCACTGTAACTGTGATGATGAGGAAGCACTTTTCAGCATACACACAATCCTTGTTGGTCAAAAAGTCAGTGATTTTTTCATTGCAATTGCATATTTTTCAATACCAATTGAGCTTCTTTACTTTGTTAGTCGTTCAAATGTTCCTTTCAAATTGCTGTTTCTTCAATTCATAGCCTTCATAGTTCTATGTGGTATGACTCATTTACTCAATGCTTATTCTTATCATAGTCATCCTTCTTTTCAACTATTGCTTTCCCTTACTGTTGCTAAATTCCTCACTGCTCTTGTGTCGTGTGCAACGGCATTGACACTTCCGCCGTTGATCCCTCTCCTTCTTAGAATTAAGGTGAGGGAGATTTTCTTGAGGCAGAATGTGATGGAATTGGGGCAAGAAGTTGGGATTATGAAGAAACAAAAGGAAGCTAGTTGGCATGTTAGGATGCTTACTAGGGAAATTAGGAAGTCTCTTGATAAACATACAATTTTGTATACTACTCTTGTTGAGCTTTCTAAGGCTTTGGATTTGCATAATTGTGCTGTTTGGATGCCGAATGATGATAGGAGAGAGATGTATTTGACTCATGAATTGAAATCGGATTCGGGTAAGAGTTTTCATCATAATTCTATTCCTGTGATTGACCCTGATGTGTTGGAGATAAGGAAAACTAAAGGGGTTAGGATTTTGAGGCCTGAATCTAAACTAGGAGCTGCGAGTAGTGGCGGTGGGGGTACTGAGGAGTTGGGTGCTGTCGCGGCTATTCGTATGCCGATGCTTCATGTTTCGAATTTCAAAGGAGGGACGCCGGAGTTGGTTGATACATGTTATGCTATACTAGTTTTGGTTCTTCCAGGTTCGGACTCTAGGGTTTGGACCGCTCCAGAGATGGAGATAGTTGAGGTGGTGGCTGATCAGGTGGCCGTAGCCCTTTCTCATGCGTCGGTTCTCGAAGAGTCTCATTTAATGAGAGAGAAACTCGAAGAGCAAAACCGAGCTTTGCAACAGTCTCAAAAGAACGCGATGATGGCTAGCCAGGCTAGGAAGTCATTCCAAACAGTGATGAGCCACGGACTGAGGAGGCCAATGCATTCAGTTGTGGGGATGCTTTCATTGTTTCAAGAGGGTAATATGAGGCCTGAACAAAAGATTATTGGTGACACGATGTTGAAAGTCGGCAACGTGCTCTCGAGTTTAGTAAACGATGTAATGGATATTTCTGAAAATAAAAAGGGTGGCCTTCAGTTAGAGATGAAACCTTTCCTTCTACATTCCATGTTGAGGGAAGCCGCTTGCATTGCTAAGTGCTTGTGTGTGTATCAAGGGTTTGGTTTTCAAATTGATGTCGAAAAGTCTTTGCCTGAAAAAGTTTTAGGCGACGAAGCAAGAACTTTTCAAGTAATTATGCATATTGTTGGCTATTTGTTGAACACGCGTGACCGAGGGAATCTTGTTTTTCGGGTTTTTGTTACAAGTGAGGGTGGTGATAAGGATGACAAAAAATTTGGTGTTTGGAGATCGAGCAGCCCAGTTGAGTATGTAGACATAAAATTTGATTTTCAGATTACTGGTAATTCTCAGTCAGATGAACCGGTTTCAACTAAACAACAGATTGGTAGGAGGCTGAATCACAACAGTGAATCTAAGGAGGGCTTGAGCTTCAATATGTGCAGGAGGTTGGTACAGATAATGCAAGGTAATATATGGATATTACCAAACTCTCAGGGTTTGGTGCAAGGCGTGTCACTTCTTCTAAAGTTTCAGATAGGACCATCGCTTGAAAGATACATGTTTGCACCTAAAGATTATTCAAATTCACAGTTTGGAGGCCTCAAGATTTTGTTAGCAGATGATGATGGTTTAAATAGGATCGTGACAAAGAAGCTACTCGAGAGGCTGGGCTGTCTAGTAACAGCAGTTTCATCAGGGTTTGAGTGCCTGGGTGCTATAAGTGGCTCTGGTGGTAACTCATTCAAAATTATCATGTTAGACATTCACATGCCTGAAATGGATGGTTTTGAAGTGGCGGCAAGGATCAGGAAATTCAATGGCCCTAATTGGCCTTTGATCATAGCTCTTATAGCTAATGCAGAAGAGCAAGTTAAGGATAGATGCATGCTGGCGGGAATGAATGGTGTGATCCGGAAACCAATCCTCCTTAAACAGATAGCGGATGAACTTAGATCGGTCCTACTTCGTGCAGGTGAAAAACTGTGA

Protein sequence

>Msa0031840

MKTLILLLLLFNLTLYASATDSDEYDHCNCDDEEALFSIHTILVGQKVSDFFIAIAYFSIPIELLYFVSRSNVPFKLLFLQFIAFIVLCGMTHLLNAYSYHSHPSFQLLLSLTVAKFLTALVSCATALTLPPLIPLLLRIKVREIFLRQNVMELGQEVGIMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALDLHNCAVWMPNDDRREMYLTHELKSDSGKSFHHNSIPVIDPDVLEIRKTKGVRILRPESKLGAASSGGGGTEELGAVAAIRMPMLHVSNFKGGTPELVDTCYAILVLVLPGSDSRVWTAPEMEIVEVVADQVAVALSHASVLEESHLMREKLEEQNRALQQSQKNAMMASQARKSFQTVMSHGLRRPMHSVVGMLSLFQEGNMRPEQKIIGDTMLKVGNVLSSLVNDVMDISENKKGGLQLEMKPFLLHSMLREAACIAKCLCVYQGFGFQIDVEKSLPEKVLGDEARTFQVIMHIVGYLLNTRDRGNLVFRVFVTSEGGDKDDKKFGVWRSSSPVEYVDIKFDFQITGNSQSDEPVSTKQQIGRRLNHNSESKEGLSFNMCRRLVQIMQGNIWILPNSQGLVQGVSLLLKFQIGPSLERYMFAPKDYSNSQFGGLKILLADDDGLNRIVTKKLLERLGCLVTAVSSGFECLGAISGSGGNSFKIIMLDIHMPEMDGFEVAARIRKFNGPNWPLIIALIANAEEQVKDRCMLAGMNGVIRKPILLKQIADELRSVLLRAGEKL*