AlfalfaGEDB | Msa0032310

M. sativa cultivar zhongmu-4 / Msa0032310

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0031974 GO:0031981 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051276 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0140096 GO:1901564
PFAM: PF05033.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032310	XP_024629421.2	64.792	480	19	4	1	330	7	486	0.0	561
Msa0032310	XP_024629421.2	68.116	345	43	3	530	807	229	573	1.99e-140	441
Msa0032310	XP_024629421.2	92.778	180	13	0	359	538	229	408	2.59e-100	336

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032310	sp\|Q8W595\|SUVR4_ARATH	43.038	237	68	4	618	788	135	370	1.35e-51	191
Msa0032310	sp\|Q8W595\|SUVR4_ARATH	47.368	171	59	2	191	330	135	305	1.92e-44	171
Msa0032310	sp\|Q8W595\|SUVR4_ARATH	54.839	93	41	1	447	538	135	227	4.06e-26	116

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0032310	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032310	MtrunA17_Chr1g0190311	64.792	480	19	4	1	330	7	486	0.0	561
Msa0032310	MtrunA17_Chr1g0190311	68.116	345	43	3	530	807	229	573	1.83e-144	441
Msa0032310	MtrunA17_Chr1g0190311	92.778	180	13	0	359	538	229	408	2.38e-104	336
Msa0032310	MtrunA17_Chr1g0190311	86.486	37	5	0	333	369	374	410	5.89e-12	69.3
Msa0032310	MtrunA17_Chr8g0392541	81.673	251	15	2	112	331	29	279	7.23e-134	400
Msa0032310	MtrunA17_Chr8g0392541	71.277	282	34	3	534	768	24	305	3.51e-123	373
Msa0032310	MtrunA17_Chr8g0392541	92.090	177	13	1	363	538	24	200	3.33e-103	321
Msa0032310	MtrunA17_Chr8g0392541	83.784	37	6	0	333	369	166	202	7.79e-12	67.4
Msa0032310	MtrunA17_Chr7g0262001	37.805	246	85	5	628	807	388	631	3.72e-41	161
Msa0032310	MtrunA17_Chr7g0262001	45.570	158	58	1	201	330	388	545	3.42e-37	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0032310	AT3G04380.3	43.038	237	68	4	618	788	119	354	9.49e-53	191
Msa0032310	AT3G04380.3	47.368	171	59	2	191	330	119	289	1.74e-45	171
Msa0032310	AT3G04380.3	54.839	93	41	1	447	538	119	211	3.43e-27	116
Msa0032310	AT3G04380.5	43.038	237	68	4	618	788	92	327	1.32e-52	190
Msa0032310	AT3G04380.5	47.368	171	59	2	191	330	92	262	1.71e-45	170
Msa0032310	AT3G04380.5	54.839	93	41	1	447	538	92	184	3.36e-27	116
Msa0032310	AT3G04380.1	43.038	237	68	4	618	788	135	370	1.37e-52	191
Msa0032310	AT3G04380.1	47.368	171	59	2	191	330	135	305	1.95e-45	171
Msa0032310	AT3G04380.1	54.839	93	41	1	447	538	135	227	4.13e-27	116
Msa0032310	AT3G04380.2	43.038	237	68	4	618	788	108	343	1.53e-52	190

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Find 192 sgRNAs with CRISPR-Local

Find 596 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCTGGAAGATTGGAAA+TGG	0.469184	1_1:+59335942	Msa0032310:CDS
AACACTAGAAGATTTGTCCA+AGG	0.586159	1_1:+59335701	Msa0032310:CDS
AACCAATTCGCAGGCATTCA+TGG	0.426552	1_1:+59328063	Msa0032310:CDS
AACTCTCCACCAGTTTCTTG+AGG	0.517959	1_1:-59334827	None:intergenic
AAGACAGTCGCCTGAACAAT+CGG	0.467464	1_1:-59331678	None:intergenic
AAGACAGTCGCCTGAACAAT+CGG	0.467464	1_1:-59334780	None:intergenic
AATAACACCAGAACCAGTAA+GGG	0.617172	1_1:+59328764	Msa0032310:CDS
AATAACACCAGAACCAGTAA+GGG	0.617172	1_1:+59331347	Msa0032310:CDS
AATAACACCAGAACCAGTAA+GGG	0.617172	1_1:+59334449	Msa0032310:CDS
AATAGTTTACCTGCAATTTA+CGG	0.316922	1_1:-59329405	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATACAACTTTGACAACAC+CGG	-	chr1_1:59327500-59327519	None:intergenic	30.0%
ACAACAGATCAAATCAATGT+GGG	-	chr1_1:59327691-59327710	None:intergenic	30.0%
TATAAGGACAAAATGTTAGC+AGG	-	chr1_1:59327746-59327765	None:intergenic	30.0%
GTTTCCTGTTTAAAAGTCTT+GGG	-	chr1_1:59328001-59328020	None:intergenic	30.0%
AGTTTCCTGTTTAAAAGTCT+TGG	-	chr1_1:59328002-59328021	None:intergenic	30.0%
AGAGATAGAAAGATTTATCC+TGG	+	chr1_1:59328091-59328110	Msa0032310:CDS	30.0%
GAGATAGAAAGATTTATCCT+GGG	+	chr1_1:59328092-59328111	Msa0032310:CDS	30.0%
AGATAGAAAGATTTATCCTG+GGG	+	chr1_1:59328093-59328112	Msa0032310:CDS	30.0%
CGTTGTAAAAATCCAATTGA+TGG	+	chr1_1:59328133-59328152	Msa0032310:intron	30.0%
AGGACAAATGAAAGAAAAAC+GGG	-	chr1_1:59328375-59328394	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	59327440	59335995	59327440	ID=Msa0032310;Name=Msa0032310
chr1_1	mRNA	59327440	59335995	59327440	ID=Msa0032310-mRNA-1;Parent=Msa0032310;Name=Msa0032310-mRNA-1;_AED=0.18;_eAED=0.21;_QI=0\|0\|0\|1\|0.85\|0.75\|8\|0\|832
chr1_1	exon	59327440	59327490	59327440	ID=Msa0032310-mRNA-1:exon:18275;Parent=Msa0032310-mRNA-1
chr1_1	exon	59327851	59328130	59327851	ID=Msa0032310-mRNA-1:exon:18276;Parent=Msa0032310-mRNA-1
chr1_1	exon	59328669	59329181	59328669	ID=Msa0032310-mRNA-1:exon:18277;Parent=Msa0032310-mRNA-1
chr1_1	exon	59329272	59329417	59329272	ID=Msa0032310-mRNA-1:exon:18278;Parent=Msa0032310-mRNA-1
chr1_1	exon	59330300	59330408	59330300	ID=Msa0032310-mRNA-1:exon:18279;Parent=Msa0032310-mRNA-1
chr1_1	exon	59331252	59331764	59331252	ID=Msa0032310-mRNA-1:exon:18280;Parent=Msa0032310-mRNA-1
chr1_1	exon	59334354	59334907	59334354	ID=Msa0032310-mRNA-1:exon:18281;Parent=Msa0032310-mRNA-1
chr1_1	exon	59335663	59335995	59335663	ID=Msa0032310-mRNA-1:exon:18282;Parent=Msa0032310-mRNA-1
chr1_1	CDS	59327440	59327490	59327440	ID=Msa0032310-mRNA-1:cds;Parent=Msa0032310-mRNA-1
chr1_1	CDS	59327851	59328130	59327851	ID=Msa0032310-mRNA-1:cds;Parent=Msa0032310-mRNA-1
chr1_1	CDS	59328669	59329181	59328669	ID=Msa0032310-mRNA-1:cds;Parent=Msa0032310-mRNA-1
chr1_1	CDS	59329272	59329417	59329272	ID=Msa0032310-mRNA-1:cds;Parent=Msa0032310-mRNA-1
chr1_1	CDS	59330300	59330408	59330300	ID=Msa0032310-mRNA-1:cds;Parent=Msa0032310-mRNA-1
chr1_1	CDS	59331252	59331764	59331252	ID=Msa0032310-mRNA-1:cds;Parent=Msa0032310-mRNA-1
chr1_1	CDS	59334354	59334907	59334354	ID=Msa0032310-mRNA-1:cds;Parent=Msa0032310-mRNA-1
chr1_1	CDS	59335663	59335995	59335663	ID=Msa0032310-mRNA-1:cds;Parent=Msa0032310-mRNA-1

Gene Sequence

>Msa0032310

GCAATTAAAGCCCTTGAAGCTATGAAGGCTGTAGGAATCTCAGAGGTCGAGCAAGAAGAACATAAGAGAAAAGCTCCAGTAAGTTGTCATGATGGAGAGAAACCTAAACAGAAACTTCACTTGGTAGATATAGACAACCAGGTTTTGTCAGCTGGCAACTCAAGACAAGTGTTGTCTGTAGAAGACACTGGCATACCTCCCAAGACTTTTAAACAGGAAACTATGAAACCCTCTCAAATTTCCAGGCAAGACATGAAGCTCACAACCAATTCGCAGGCATTCATGGCTGCTAGAGATAGAAAGATTTATCCTGGGGCAGCATCATCTGAAGGCTCACTAAAAGCTTCCAATGGAAATCTTACTGTCAAATCCCTGTCAGATGTGTATCAGAATACACACAAGATAGAAGCTACTCCCACATGCAATAATAACACCAGAACCAGTAAGGGTAATATTGATATTGGTTCTTCTTCACCCTTGGGAGAAGTTAAATCTTCTTTAAATTGTGATGCTGCATTAAGGACTGGCTTGAATTTTAATCGAAATGGGTCAAGGCAAACTCTTTCTGAGGATAAAAAGAAATCCTTTCGATATGTCGAAGACATAACAAAAGGTTCTGAAAACATTAAAATATCATTATTAGACGAAACCAACAGTGAGGATTTTCCAAAATTTAATTACATTCCATGTAACACAATGTATCAAAGTGCAAATGTTAATATTTCACTTGCTCGGATTACGGATGAGGATTGCTGCTCTGATTGTTCAGGCGACTGTCTTTCCTTGTCAGTTCCTTGTGCATGCTCTCAAGAAACTGGTGGAGAGTTTGCTTACACTTCACAAGTTGAGAGGACTAAGAATGAGACCAAACTTGAACCATGCAAGGGACATCTGGTTAGGACGTTTATAAATGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAACTCGGGTAGTGCAACGAGGTTTAAGCCGTAAATTGCAGAAACCGGATGAGGATTGCAGCTCCGATTGTTCTGGCGACTGTCTGTCCTTGTCATTTTCTTGTGCGTGCTCTCAAGAAACTGGAGGAGAGTTTGCTTACACTTCACAAGGCTCACTAATAGCTTCCAATGGAAATCTTACTGTCAAATCCCTGTCAGATGTGTATCAGAATACACACAAGATAGAAGCTACTCCCACATGCAATAATAACACCAGAACCAGTAAGGGTAATATTGATATTGGTTCTTCTTCACCCTTGGGAGAAGTTAAATCTTCTTTAAATTGTGATGCTGCATTAAGGACTGGCTTGAATTTAAATCGAAATGGGTCAAGGCAAACTCTTTCTGAGGATAAAAAGAAATCCTTTCGATATGTCGAAGACATAACAAAAGGTTCTGAAAACATTAAAATATCATTATTAGACGAAACCAACAGTGAGGATTTTCCAAAATTTAATTACATTCCATGTAACACAATGTATCAAAGTGCAAATGTTAATATTTCACTTGCTCGGATTGCGGATGAGGATTGCTGCTCCGATTGTTCAGGCGACTGTCTTTCCTTGTCAGTTCCTTCTGCATGCTCTCAAGAAACTGGTGGAGAGTTTGCTTACACTTCTCAAGGCTCACCAAAAGCTTCCAATGGAAATCTTACTGTCAAATCCCTGTCAGATGTGTATCAGAATAGACACAAGATAGAAGCTACTCCCACATGCAATAATAACACCAGAACCAGTAAGGGTAATATTGATATTGGTTCTTCTTCACCCTTGGGAGAAGTTAAATCTTCTTTAAATTGTGATGCTGCATTAAGGACTGGCTTGAATTTAAATCGAAATGGGTCAAGGCAAACTCTTTCTGAGGATAAAAAGAAATCCTTTCGATATGTCGAAGACATAACAAAAGGTTCTGAAAACATTAAAATATCATTATTAGACGAAACCAACAGTGAGGATTTTCCAAAATTTAATTACATTCCATGTAACACAATGTATCAAAGTGCAAATGTTAATATTTCACTTGCTCGGATTGCGGATGAGGATTGCTGCTCCGATTGTTCAGGCGACTGTCTTTCCTTGACAGTTCCTTGTGCATGCCCTCAAGAAACTGGTGGAGAGTTTGCTTACACTTCACAAGGTTTGTTGAGTGAAAAGTTTTTAACAGATTGCATGTCTATGGTGTTTTTGACTCAAGAAGGAAAGGGCTGGGGCGTTATAACACTAGAAGATTTGTCCAAGGGATCCTTTGTCTGTGAATATGCATGGGAGATTTTAACCAATTCAGAATTATATGACAGGATTGTGCATAGTACCGGCAATGATAGACATACATATCCTGTAACACTTGATGCAGACTGGGGCTCGAAAGTGGGATTAATGATAATTAATAAATTGGGGCTAAGCCAGGCTTCACATGGAGAAGCATACATCAATCTATATGTATCAATGATAATTAATAAAGGCTGGAAGATTGGAAATGGCAATTCAATCAAGGTTTGGAAGGATAATTGA

Protein sequence

>Msa0032310

AIKALEAMKAVGISEVEQEEHKRKAPVSCHDGEKPKQKLHLVDIDNQVLSAGNSRQVLSVEDTGIPPKTFKQETMKPSQISRQDMKLTTNSQAFMAARDRKIYPGAASSEGSLKASNGNLTVKSLSDVYQNTHKIEATPTCNNNTRTSKGNIDIGSSSPLGEVKSSLNCDAALRTGLNFNRNGSRQTLSEDKKKSFRYVEDITKGSENIKISLLDETNSEDFPKFNYIPCNTMYQSANVNISLARITDEDCCSDCSGDCLSLSVPCACSQETGGEFAYTSQVERTKNETKLEPCKGHLVRTFINECWRKCGCDMQCGTRVVQRGLSRKLQKPDEDCSSDCSGDCLSLSFSCACSQETGGEFAYTSQGSLIASNGNLTVKSLSDVYQNTHKIEATPTCNNNTRTSKGNIDIGSSSPLGEVKSSLNCDAALRTGLNLNRNGSRQTLSEDKKKSFRYVEDITKGSENIKISLLDETNSEDFPKFNYIPCNTMYQSANVNISLARIADEDCCSDCSGDCLSLSVPSACSQETGGEFAYTSQGSPKASNGNLTVKSLSDVYQNRHKIEATPTCNNNTRTSKGNIDIGSSSPLGEVKSSLNCDAALRTGLNLNRNGSRQTLSEDKKKSFRYVEDITKGSENIKISLLDETNSEDFPKFNYIPCNTMYQSANVNISLARIADEDCCSDCSGDCLSLTVPCACPQETGGEFAYTSQGLLSEKFLTDCMSMVFLTQEGKGWGVITLEDLSKGSFVCEYAWEILTNSELYDRIVHSTGNDRHTYPVTLDADWGSKVGLMIINKLGLSQASHGEAYINLYVSMIINKGWKIGNGNSIKVWKDN*