Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0032440 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032440 | MtrunA17_Chr1g0192841 | 81.938 | 227 | 27 | 1 | 174 | 386 | 17 | 243 | 8.24e-121 | 349 |
| Msa0032440 | MtrunA17_Chr5g0435401 | 49.745 | 392 | 132 | 10 | 37 | 386 | 44 | 412 | 1.06e-100 | 304 |
| Msa0032440 | MtrunA17_Chr5g0445971 | 66.272 | 169 | 47 | 4 | 2 | 170 | 5 | 163 | 1.77e-65 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCGTTGGATATGTTAAA+TGG | 0.182684 | 1_1:-59571646 | Msa0032440:CDS |
| GGTGCTTATGCTGCAATATT+TGG | 0.183459 | 1_1:-59572323 | Msa0032440:CDS |
| CACAATTCCATTGGTGAGTT+TGG | 0.209381 | 1_1:+59574263 | None:intergenic |
| TACTGGTTTATCTCAATTAA+TGG | 0.258551 | 1_1:-59572687 | Msa0032440:CDS |
| TCCCTTCTTCCCAGTTGATT+TGG | 0.271998 | 1_1:-59571677 | Msa0032440:CDS |
| CCTTGGGCGCTGCCGGTTGC+AGG | 0.289338 | 1_1:+59573063 | None:intergenic |
| GATTTGTTAAATGAGTTTAA+AGG | 0.306346 | 1_1:-59572365 | Msa0032440:CDS |
| TGTCAAACTAACTGAAGTTT+TGG | 0.307954 | 1_1:-59574187 | Msa0032440:CDS |
| AGTTGTCTCTGCACTCAAAT+TGG | 0.316435 | 1_1:-59573175 | Msa0032440:CDS |
| TTCTTGCTTTCCTCCACATA+TGG | 0.365771 | 1_1:+59571928 | None:intergenic |
| TTTGTAAAGGTACGCGTAAA+AGG | 0.367652 | 1_1:-59572724 | Msa0032440:intron |
| TTCAGTTAGTTTGACATAGA+AGG | 0.372838 | 1_1:+59574194 | None:intergenic |
| CAGTAAGTATCCAAATCAAC+TGG | 0.378693 | 1_1:+59571667 | None:intergenic |
| TTCTACAGGTTTCCTGCAAC+CGG | 0.391216 | 1_1:-59573075 | Msa0032440:CDS |
| GAAGAGCACTCAAGATCTTA+AGG | 0.392322 | 1_1:-59571827 | Msa0032440:CDS |
| AGGTTGGTCTTCAAAACAAA+TGG | 0.395740 | 1_1:-59573203 | Msa0032440:CDS |
| TTGAGAAATTGTACTTCTAC+AGG | 0.399495 | 1_1:-59573089 | Msa0032440:CDS |
| AATCCTTATAACCTGTCATT+TGG | 0.408344 | 1_1:+59572615 | None:intergenic |
| CAACCGCTAGTATAGTCATT+TGG | 0.413628 | 1_1:+59571618 | None:intergenic |
| GGAGGAAAGCAAGAAGATAA+AGG | 0.418994 | 1_1:-59571920 | Msa0032440:CDS |
| AATGGAAGGCAACAAAACTA+TGG | 0.422265 | 1_1:-59574307 | Msa0032440:CDS |
| GTCTCTATCTCTAAGTCATC+AGG | 0.427299 | 1_1:+59574216 | None:intergenic |
| TGGTGACTTCCAAGTAAAAC+AGG | 0.431064 | 1_1:+59573490 | None:intergenic |
| TTAGATACCTTGGGCGCTGC+CGG | 0.439165 | 1_1:+59573056 | None:intergenic |
| CTGGTGAAAACCTCCTCTTC+TGG | 0.440306 | 1_1:+59573470 | None:intergenic |
| CCCATTGGACACAATTCCAT+TGG | 0.444629 | 1_1:+59574254 | None:intergenic |
| ATCCAAATCAACTGGGAAGA+AGG | 0.454997 | 1_1:+59571675 | None:intergenic |
| GCTCAAGATCCGGACATTGA+TGG | 0.455328 | 1_1:-59572128 | Msa0032440:CDS |
| AACTCATTTAACAAATCACT+TGG | 0.455632 | 1_1:+59572371 | None:intergenic |
| TTTGGATTCTTAATTAAAGC+AGG | 0.456560 | 1_1:-59572305 | Msa0032440:CDS |
| GTTCGTTGGATATGTTAAAT+GGG | 0.459203 | 1_1:-59571645 | Msa0032440:CDS |
| GGTGTATCTTGTGAATTTAG+AGG | 0.459768 | 1_1:-59572344 | Msa0032440:CDS |
| TATTTGATATCCACTTTGTC+CGG | 0.459963 | 1_1:+59572181 | None:intergenic |
| AAGACAAAGAAAAGAAGAAA+CGG | 0.466286 | 1_1:-59572217 | Msa0032440:CDS |
| TACGCATGGCTGTTGATGCT+TGG | 0.488165 | 1_1:-59572094 | Msa0032440:CDS |
| CACCCGAGGTTCTTGACAGC+CGG | 0.488188 | 1_1:+59572280 | None:intergenic |
| TTTGGATACTTACTGTTCGT+TGG | 0.489477 | 1_1:-59571659 | Msa0032440:CDS |
| AGCCGGCTGTCAAGAACCTC+GGG | 0.489585 | 1_1:-59572282 | Msa0032440:CDS |
| ACAGAAGAATAGTTTGGTAG+TGG | 0.492096 | 1_1:+59571754 | None:intergenic |
| CCAATGGAATTGTGTCCAAT+GGG | 0.492590 | 1_1:-59574254 | Msa0032440:CDS |
| TTCTTAATTAAAGCAGGAGC+CGG | 0.497515 | 1_1:-59572299 | Msa0032440:CDS |
| AGGAAGCAGAACTCGACTAC+TGG | 0.510036 | 1_1:-59572704 | Msa0032440:CDS |
| CCTGCAACCGGCAGCGCCCA+AGG | 0.510627 | 1_1:-59573063 | Msa0032440:intron |
| ACCAATGGAATTGTGTCCAA+TGG | 0.516036 | 1_1:-59574255 | Msa0032440:CDS |
| ATCGAGCACATTCATGCTTG+AGG | 0.516753 | 1_1:+59572156 | None:intergenic |
| CAACAATGCAGCTGTGGAGT+TGG | 0.523389 | 1_1:-59571731 | Msa0032440:CDS |
| TTGTTGACAGAAGAATAGTT+TGG | 0.526138 | 1_1:+59571748 | None:intergenic |
| TCCAAATCAACTGGGAAGAA+GGG | 0.526508 | 1_1:+59571676 | None:intergenic |
| TTCTGTCAACAATGCAGCTG+TGG | 0.527890 | 1_1:-59571737 | Msa0032440:CDS |
| CATTTGGCTAGAGTAGTCCT+TGG | 0.531068 | 1_1:+59572631 | None:intergenic |
| TTGGCATCTGAAGGTGATGA+TGG | 0.536024 | 1_1:+59574282 | None:intergenic |
| TACTTGGAAGTCACCAGAAG+AGG | 0.540823 | 1_1:-59573483 | Msa0032440:CDS |
| GATCATTGACAATAAACAGA+TGG | 0.543332 | 1_1:-59571878 | Msa0032440:CDS |
| GGTTGGTCTTCAAAACAAAT+GGG | 0.543380 | 1_1:-59573202 | Msa0032440:CDS |
| TCGATTAAAAGCTCAAGATC+CGG | 0.550386 | 1_1:-59572138 | Msa0032440:CDS |
| TGATATCCACTTTGTCCGGT+AGG | 0.555314 | 1_1:+59572185 | None:intergenic |
| GAGCCGGCTGTCAAGAACCT+CGG | 0.562075 | 1_1:-59572283 | Msa0032440:CDS |
| GACTACTCTAGCCAAATGAC+AGG | 0.564216 | 1_1:-59572626 | Msa0032440:intron |
| AGAAGAGTACTGTTTCCCAT+TGG | 0.564784 | 1_1:+59574239 | None:intergenic |
| GTCTCTGCACTCAAATTGGA+AGG | 0.566571 | 1_1:-59573171 | Msa0032440:CDS |
| AAGATCTTAAGGAGGAAAAG+AGG | 0.571062 | 1_1:-59571816 | Msa0032440:CDS |
| AAACGGCGAGGTCCTCCTAC+CGG | 0.572639 | 1_1:-59572200 | Msa0032440:CDS |
| TTCCTAGCTCAAACAATGGA+AGG | 0.574513 | 1_1:-59574321 | None:intergenic |
| TAGTCGTAACCGCACACACT+AGG | 0.575038 | 1_1:+59571793 | None:intergenic |
| GAATGTGGCAAAGGTTTCCA+AGG | 0.580859 | 1_1:-59572648 | Msa0032440:CDS |
| GGGCACTGAAGATCTTAAGA+AGG | 0.581617 | 1_1:-59571857 | Msa0032440:CDS |
| ATCATTGACAATAAACAGAT+GGG | 0.586725 | 1_1:-59571877 | Msa0032440:CDS |
| AGATAATCTGAATGTGGCAA+AGG | 0.590122 | 1_1:-59572657 | Msa0032440:CDS |
| TTGGAAGTCACCAGAAGAGG+AGG | 0.590853 | 1_1:-59573480 | Msa0032440:CDS |
| TATCCACTTTGTCCGGTAGG+AGG | 0.594215 | 1_1:+59572188 | None:intergenic |
| TTGGTGAGTTTGGCATCTGA+AGG | 0.614422 | 1_1:+59574273 | None:intergenic |
| TCAGATGCCAAACTCACCAA+TGG | 0.618895 | 1_1:-59574270 | Msa0032440:CDS |
| TTTCATGTAGCCATATGTGG+AGG | 0.619171 | 1_1:-59571938 | Msa0032440:intron |
| GGTCCTCCTACCGGACAAAG+TGG | 0.623840 | 1_1:-59572191 | Msa0032440:CDS |
| ACAAGTCTAAGATTGTCTCT+CGG | 0.631739 | 1_1:+59573514 | None:intergenic |
| AAGCATCAACAGCCATGCGT+AGG | 0.637247 | 1_1:+59572096 | None:intergenic |
| GAAAAGAGGCCTAGTGTGTG+CGG | 0.639000 | 1_1:-59571802 | Msa0032440:CDS |
| AGTAAGTATCCAAATCAACT+GGG | 0.663991 | 1_1:+59571668 | None:intergenic |
| GAGCACTCAAGATCTTAAGG+AGG | 0.665195 | 1_1:-59571824 | Msa0032440:CDS |
| GGTGCTTGTAGAAGCACCCG+AGG | 0.679117 | 1_1:+59572266 | None:intergenic |
| TGATGAAGATAATCTGAATG+TGG | 0.680646 | 1_1:-59572663 | Msa0032440:CDS |
| AAAGAAAAGAAGAAACGGCG+AGG | 0.681943 | 1_1:-59572212 | Msa0032440:CDS |
| AGACATGAGATTGAACCCAG+AGG | 0.774697 | 1_1:+59574161 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTTTATGAGATAATAA+AGG | - | chr1_1:59572353-59572372 | Msa0032440:CDS | 15.0% |
| !!! | AAGTTTTATGAGATAATAAA+GGG | - | chr1_1:59572354-59572373 | Msa0032440:CDS | 15.0% |
| !! | TCAGATTTAATATATTGTAA+TGG | - | chr1_1:59572695-59572714 | Msa0032440:CDS | 15.0% |
| !! | CATGAAAAAGTAATTATAAA+TGG | + | chr1_1:59573988-59574007 | None:intergenic | 15.0% |
| !! | TTTATACCAAACATTTAAAG+AGG | + | chr1_1:59572240-59572259 | None:intergenic | 20.0% |
| !! | AAATTAAATCATGTGATCAT+GGG | + | chr1_1:59572525-59572544 | None:intergenic | 20.0% |
| !! | ATTATATAGACACAACATAT+TGG | + | chr1_1:59572624-59572643 | None:intergenic | 20.0% |
| !! | TAATATAAATTAGTCAAGAG+AGG | - | chr1_1:59572640-59572659 | Msa0032440:CDS | 20.0% |
| !! | TGAAATGAAATTAAATCACT+CGG | - | chr1_1:59573076-59573095 | Msa0032440:CDS | 20.0% |
| !!! | GATTTGTTAAATGAGTTTAA+AGG | - | chr1_1:59573574-59573593 | Msa0032440:intron | 20.0% |
| ! | TGTTTGGATATTTGGATTTA+CGG | - | chr1_1:59571958-59571977 | Msa0032440:intron | 25.0% |
| !! | TTTTTCTTTTAGTGCATGTT+TGG | + | chr1_1:59572054-59572073 | None:intergenic | 25.0% |
| ! | AAACATGCACTAAAAGAAAA+AGG | - | chr1_1:59572053-59572072 | Msa0032440:intron | 25.0% |
| ! | TTGTGGATAAAAAATGTAGT+TGG | - | chr1_1:59572091-59572110 | Msa0032440:CDS | 25.0% |
| !! | TACAACACATTTCAGTTTTA+AGG | + | chr1_1:59572210-59572229 | None:intergenic | 25.0% |
| ! | TTTGTTCCTCTTTAAATGTT+TGG | - | chr1_1:59572231-59572250 | Msa0032440:CDS | 25.0% |
| ! | CAAATTAAATCATGTGATCA+TGG | + | chr1_1:59572526-59572545 | None:intergenic | 25.0% |
| ! | ATGCTTGATATGTAGATATT+TGG | - | chr1_1:59572965-59572984 | Msa0032440:intron | 25.0% |
| ! | AAATGCCTTGTAAAAAACAT+TGG | - | chr1_1:59573032-59573051 | Msa0032440:intron | 25.0% |
| !!! | TACTGGTTTATCTCAATTAA+TGG | - | chr1_1:59573252-59573271 | Msa0032440:intron | 25.0% |
| !! | ATAAAGTAACAAACCTGTTT+TGG | + | chr1_1:59573504-59573523 | None:intergenic | 25.0% |
| ! | AACTCATTTAACAAATCACT+TGG | + | chr1_1:59573571-59573590 | None:intergenic | 25.0% |
| ! | TTTGGATTCTTAATTAAAGC+AGG | - | chr1_1:59573634-59573653 | Msa0032440:intron | 25.0% |
| !!! | TTGTTTTCTTTGTCATTTGA+GGG | + | chr1_1:59573697-59573716 | None:intergenic | 25.0% |
| ! | AAGACAAAGAAAAGAAGAAA+CGG | - | chr1_1:59573722-59573741 | Msa0032440:intron | 25.0% |
| ! | ATTTCAAACAAACAAAGTAG+AGG | + | chr1_1:59573962-59573981 | None:intergenic | 25.0% |
| ! | GAAGATAAAGGAAAAAAAGA+AGG | - | chr1_1:59574031-59574050 | Msa0032440:intron | 25.0% |
| ! | ATCATTGACAATAAACAGAT+GGG | - | chr1_1:59574062-59574081 | Msa0032440:intron | 25.0% |
| ! | TTCAGTTAGTTTGACATAGA+AGG | + | chr1_1:59571748-59571767 | None:intergenic | 30.0% |
| ! | TGTCAAACTAACTGAAGTTT+TGG | - | chr1_1:59571752-59571771 | Msa0032440:CDS | 30.0% |
| TTGTGGCAAAAACTACAAAT+TGG | + | chr1_1:59572025-59572044 | None:intergenic | 30.0% | |
| TGGATAAAAAATGTAGTTGG+AGG | - | chr1_1:59572094-59572113 | Msa0032440:CDS | 30.0% | |
| GGATAAAAAATGTAGTTGGA+GGG | - | chr1_1:59572095-59572114 | Msa0032440:CDS | 30.0% | |
| GATAAAAAATGTAGTTGGAG+GGG | - | chr1_1:59572096-59572115 | Msa0032440:CDS | 30.0% | |
| ! | ATGTCTCGATTTTTCTTTTG+TGG | + | chr1_1:59572169-59572188 | None:intergenic | 30.0% |
| AGACATGCATTTAGTCATAT+TGG | - | chr1_1:59572183-59572202 | Msa0032440:CDS | 30.0% | |
| AGAATGTGCTTCAATTTAGA+AGG | - | chr1_1:59572278-59572297 | Msa0032440:CDS | 30.0% | |
| GAATGTGCTTCAATTTAGAA+GGG | - | chr1_1:59572279-59572298 | Msa0032440:CDS | 30.0% | |
| TTGAGAAATTGTACTTCTAC+AGG | - | chr1_1:59572850-59572869 | Msa0032440:intron | 30.0% | |
| ATTGATCTCTTAGATACCTT+GGG | + | chr1_1:59572895-59572914 | None:intergenic | 30.0% | |
| AATTGATCTCTTAGATACCT+TGG | + | chr1_1:59572896-59572915 | None:intergenic | 30.0% | |
| GTATCTAAGAGATCAATTTG+TGG | - | chr1_1:59572898-59572917 | Msa0032440:intron | 30.0% | |
| ! | GTAGATATCTTGTTTCATTC+TGG | - | chr1_1:59572930-59572949 | Msa0032440:intron | 30.0% |
| !!! | CTAGACCAATGTTTTTTACA+AGG | + | chr1_1:59573040-59573059 | None:intergenic | 30.0% |
| ! | CTTGTAAAAAACATTGGTCT+AGG | - | chr1_1:59573038-59573057 | Msa0032440:intron | 30.0% |
| ! | ATTGGTCTAGGAAAATGTAT+TGG | - | chr1_1:59573050-59573069 | Msa0032440:intron | 30.0% |
| AATGAAATTAAATCACTCGG+TGG | - | chr1_1:59573079-59573098 | Msa0032440:CDS | 30.0% | |
| AGAAAAGAAAGGAGACTTTA+AGG | + | chr1_1:59573181-59573200 | None:intergenic | 30.0% | |
| TGATGAAGATAATCTGAATG+TGG | - | chr1_1:59573276-59573295 | Msa0032440:intron | 30.0% | |
| AATCCTTATAACCTGTCATT+TGG | + | chr1_1:59573327-59573346 | None:intergenic | 30.0% | |
| TTGATCCACTGATATGTAAA+AGG | - | chr1_1:59573370-59573389 | Msa0032440:intron | 30.0% | |
| GATTACTAAAGTTCCAAAAC+AGG | - | chr1_1:59573488-59573507 | Msa0032440:CDS | 30.0% | |
| !! | CTTGTTTTCTTTGTCATTTG+AGG | + | chr1_1:59573698-59573717 | None:intergenic | 30.0% |
| TATTTGATATCCACTTTGTC+CGG | + | chr1_1:59573761-59573780 | None:intergenic | 30.0% | |
| !! | TTATCATACCTGTTTTTCAG+TGG | + | chr1_1:59573884-59573903 | None:intergenic | 30.0% |
| GATCATTGACAATAAACAGA+TGG | - | chr1_1:59574061-59574080 | Msa0032440:intron | 30.0% | |
| TTGTTGACAGAAGAATAGTT+TGG | + | chr1_1:59574194-59574213 | None:intergenic | 30.0% | |
| AGTAAGTATCCAAATCAACT+GGG | + | chr1_1:59574274-59574293 | None:intergenic | 30.0% | |
| TGTTCGTTGGATATGTTAAA+TGG | - | chr1_1:59574293-59574312 | Msa0032440:CDS | 30.0% | |
| GTTCGTTGGATATGTTAAAT+GGG | - | chr1_1:59574294-59574313 | Msa0032440:CDS | 30.0% | |
| TGTGTGCATTATGCTATGTT+TGG | - | chr1_1:59571875-59571894 | Msa0032440:CDS | 35.0% | |
| TTCCTGCATGTTTGGATATT+TGG | - | chr1_1:59571950-59571969 | Msa0032440:intron | 35.0% | |
| ATCCAAATATCCAAACATGC+AGG | + | chr1_1:59571955-59571974 | None:intergenic | 35.0% | |
| TGCATGTTTGGATGAATTTG+TGG | + | chr1_1:59572042-59572061 | None:intergenic | 35.0% | |
| TGCTTCAATTTAGAAGGGAA+AGG | - | chr1_1:59572284-59572303 | Msa0032440:CDS | 35.0% | |
| GTCAAGTAGAATTGAAACAG+AGG | + | chr1_1:59572394-59572413 | None:intergenic | 35.0% | |
| ! | ACAAGTCTAAGATTGTCTCT+CGG | + | chr1_1:59572428-59572447 | None:intergenic | 35.0% |
| ! | AGACTTGTACCTGTTTTACT+TGG | - | chr1_1:59572440-59572459 | Msa0032440:intron | 35.0% |
| AGGTCAATATGTGGATAACA+GGG | + | chr1_1:59572502-59572521 | None:intergenic | 35.0% | |
| TTAAATCATGTGATCATGGG+AGG | + | chr1_1:59572522-59572541 | None:intergenic | 35.0% | |
| TCACTTCTCATTAATGCATG+TGG | - | chr1_1:59572563-59572582 | Msa0032440:intron | 35.0% | |
| ACATATTGGATCGATAGACT+TGG | + | chr1_1:59572610-59572629 | None:intergenic | 35.0% | |
| !!! | ATTTGTTTTGAAGACCAACC+TGG | + | chr1_1:59572737-59572756 | None:intergenic | 35.0% |
| !! | AGGTTGGTCTTCAAAACAAA+TGG | - | chr1_1:59572736-59572755 | Msa0032440:intron | 35.0% |
| !! | GGTTGGTCTTCAAAACAAAT+GGG | - | chr1_1:59572737-59572756 | Msa0032440:intron | 35.0% |
| CTTTACAAAATGTAGGTGTG+AGG | + | chr1_1:59573204-59573223 | None:intergenic | 35.0% | |
| ! | CTCACACCTACATTTTGTAA+AGG | - | chr1_1:59573202-59573221 | Msa0032440:CDS | 35.0% |
| ! | TTTGTAAAGGTACGCGTAAA+AGG | - | chr1_1:59573215-59573234 | Msa0032440:intron | 35.0% |
| AGATAATCTGAATGTGGCAA+AGG | - | chr1_1:59573282-59573301 | Msa0032440:intron | 35.0% | |
| TAGCCAAATGACAGGTTATA+AGG | - | chr1_1:59573321-59573340 | Msa0032440:intron | 35.0% | |
| ! | TGCAACCTTTTACATATCAG+TGG | + | chr1_1:59573378-59573397 | None:intergenic | 35.0% |
| TGTACTTATTAGCTGCAATG+TGG | - | chr1_1:59573523-59573542 | Msa0032440:CDS | 35.0% | |
| GGTGTATCTTGTGAATTTAG+AGG | - | chr1_1:59573595-59573614 | Msa0032440:intron | 35.0% | |
| TTCTTAATTAAAGCAGGAGC+CGG | - | chr1_1:59573640-59573659 | Msa0032440:intron | 35.0% | |
| TCGATTAAAAGCTCAAGATC+CGG | - | chr1_1:59573801-59573820 | Msa0032440:intron | 35.0% | |
| !!! | ACTTTTTTGCCATCAATGTC+CGG | + | chr1_1:59573823-59573842 | None:intergenic | 35.0% |
| !! | CTTTTTCATGTAGCCATATG+TGG | - | chr1_1:59573998-59574017 | Msa0032440:intron | 35.0% |
| AAGATCTTAAGGAGGAAAAG+AGG | - | chr1_1:59574123-59574142 | Msa0032440:intron | 35.0% | |
| ACAGAAGAATAGTTTGGTAG+TGG | + | chr1_1:59574188-59574207 | None:intergenic | 35.0% | |
| !! | AATGACTGAAAAAGCACTCA+AGG | - | chr1_1:59574238-59574257 | Msa0032440:CDS | 35.0% |
| CAGTAAGTATCCAAATCAAC+TGG | + | chr1_1:59574275-59574294 | None:intergenic | 35.0% | |
| TTTGGATACTTACTGTTCGT+TGG | - | chr1_1:59574280-59574299 | Msa0032440:CDS | 35.0% | |
| CACAATTCCATTGGTGAGTT+TGG | + | chr1_1:59571679-59571698 | None:intergenic | 40.0% | |
| ACCAATGGAATTGTGTCCAA+TGG | - | chr1_1:59571684-59571703 | Msa0032440:CDS | 40.0% | |
| CCAATGGAATTGTGTCCAAT+GGG | - | chr1_1:59571685-59571704 | Msa0032440:CDS | 40.0% | |
| !! | AGAAGAGTACTGTTTCCCAT+TGG | + | chr1_1:59571703-59571722 | None:intergenic | 40.0% |
| GTCTCTATCTCTAAGTCATC+AGG | + | chr1_1:59571726-59571745 | None:intergenic | 40.0% | |
| ATATCCAAACATGCAGGAAG+TGG | + | chr1_1:59571949-59571968 | None:intergenic | 40.0% | |
| ! | GGAAAAAGTGTGTGTACTTG+TGG | - | chr1_1:59572074-59572093 | Msa0032440:CDS | 40.0% |
| ACTAGCTAGTGACCTTTAGT+GGG | + | chr1_1:59572126-59572145 | None:intergenic | 40.0% | |
| CACTAGCTAGTCATAGTCAT+CGG | - | chr1_1:59572135-59572154 | Msa0032440:CDS | 40.0% | |
| ! | AGAATTGAAACAGAGGTGCA+TGG | + | chr1_1:59572387-59572406 | None:intergenic | 40.0% |
| TGGTGACTTCCAAGTAAAAC+AGG | + | chr1_1:59572452-59572471 | None:intergenic | 40.0% | |
| GAGGTCAATATGTGGATAAC+AGG | + | chr1_1:59572503-59572522 | None:intergenic | 40.0% | |
| GGATTCTCTTGAATTTGTCC+AGG | - | chr1_1:59572716-59572735 | Msa0032440:CDS | 40.0% | |
| TCTCTTGAATTTGTCCAGGT+TGG | - | chr1_1:59572720-59572739 | Msa0032440:intron | 40.0% | |
| AGTTGTCTCTGCACTCAAAT+TGG | - | chr1_1:59572764-59572783 | Msa0032440:intron | 40.0% | |
| TAGGTGTGAGGAGAAAAGAA+AGG | + | chr1_1:59573192-59573211 | None:intergenic | 40.0% | |
| CGCGTACCTTTACAAAATGT+AGG | + | chr1_1:59573211-59573230 | None:intergenic | 40.0% | |
| GGTGCTTATGCTGCAATATT+TGG | - | chr1_1:59573616-59573635 | Msa0032440:intron | 40.0% | |
| AAAGAAAAGAAGAAACGGCG+AGG | - | chr1_1:59573727-59573746 | Msa0032440:intron | 40.0% | |
| TTTCATGTAGCCATATGTGG+AGG | - | chr1_1:59574001-59574020 | Msa0032440:intron | 40.0% | |
| TTCTTGCTTTCCTCCACATA+TGG | + | chr1_1:59574014-59574033 | None:intergenic | 40.0% | |
| GGAGGAAAGCAAGAAGATAA+AGG | - | chr1_1:59574019-59574038 | Msa0032440:intron | 40.0% | |
| !! | GAAGAGCACTCAAGATCTTA+AGG | - | chr1_1:59574112-59574131 | Msa0032440:intron | 40.0% |
| TCCAAATCAACTGGGAAGAA+GGG | + | chr1_1:59574266-59574285 | None:intergenic | 40.0% | |
| ATCCAAATCAACTGGGAAGA+AGG | + | chr1_1:59574267-59574286 | None:intergenic | 40.0% | |
| TTGGCATCTGAAGGTGATGA+TGG | + | chr1_1:59571660-59571679 | None:intergenic | 45.0% | |
| TTGGTGAGTTTGGCATCTGA+AGG | + | chr1_1:59571669-59571688 | None:intergenic | 45.0% | |
| TCAGATGCCAAACTCACCAA+TGG | - | chr1_1:59571669-59571688 | Msa0032440:CDS | 45.0% | |
| CCCATTGGACACAATTCCAT+TGG | + | chr1_1:59571688-59571707 | None:intergenic | 45.0% | |
| !!! | ACTGAAGTTTTGGACTCCTC+TGG | - | chr1_1:59571762-59571781 | Msa0032440:CDS | 45.0% |
| !!! | CTGAAGTTTTGGACTCCTCT+GGG | - | chr1_1:59571763-59571782 | Msa0032440:CDS | 45.0% |
| AGACATGAGATTGAACCCAG+AGG | + | chr1_1:59571781-59571800 | None:intergenic | 45.0% | |
| ! | ATTGCCACTTCCTGCATGTT+TGG | - | chr1_1:59571942-59571961 | Msa0032440:intron | 45.0% |
| CTAGCTAGTGACCTTTAGTG+GGG | + | chr1_1:59572125-59572144 | None:intergenic | 45.0% | |
| ! | GACTAGCTAGTGACCTTTAG+TGG | + | chr1_1:59572127-59572146 | None:intergenic | 45.0% |
| TACTTGGAAGTCACCAGAAG+AGG | - | chr1_1:59572456-59572475 | Msa0032440:intron | 45.0% | |
| TGGATAACAGGGCAAATACC+TGG | + | chr1_1:59572491-59572510 | None:intergenic | 45.0% | |
| GATCATGGGAGGTCAATATG+TGG | + | chr1_1:59572511-59572530 | None:intergenic | 45.0% | |
| GTCTCTGCACTCAAATTGGA+AGG | - | chr1_1:59572768-59572787 | Msa0032440:intron | 45.0% | |
| TTCTACAGGTTTCCTGCAAC+CGG | - | chr1_1:59572864-59572883 | Msa0032440:intron | 45.0% | |
| GTGGTGACACAAGTGTACAT+CGG | - | chr1_1:59573098-59573117 | Msa0032440:CDS | 45.0% | |
| GAATGTGGCAAAGGTTTCCA+AGG | - | chr1_1:59573291-59573310 | Msa0032440:intron | 45.0% | |
| CATTTGGCTAGAGTAGTCCT+TGG | + | chr1_1:59573311-59573330 | None:intergenic | 45.0% | |
| GACTACTCTAGCCAAATGAC+AGG | - | chr1_1:59573313-59573332 | Msa0032440:intron | 45.0% | |
| TGATATCCACTTTGTCCGGT+AGG | + | chr1_1:59573757-59573776 | None:intergenic | 45.0% | |
| ATCGAGCACATTCATGCTTG+AGG | + | chr1_1:59573786-59573805 | None:intergenic | 45.0% | |
| TGGCAAAAAAGTCCTACGCA+TGG | - | chr1_1:59573831-59573850 | Msa0032440:intron | 45.0% | |
| GATGTCTGCCACTGAAAAAC+AGG | - | chr1_1:59573873-59573892 | Msa0032440:intron | 45.0% | |
| !! | GGGCACTGAAGATCTTAAGA+AGG | - | chr1_1:59574082-59574101 | Msa0032440:intron | 45.0% |
| GAGCACTCAAGATCTTAAGG+AGG | - | chr1_1:59574115-59574134 | Msa0032440:intron | 45.0% | |
| TTCTGTCAACAATGCAGCTG+TGG | - | chr1_1:59574202-59574221 | Msa0032440:CDS | 45.0% | |
| TCCCTTCTTCCCAGTTGATT+TGG | - | chr1_1:59574262-59574281 | Msa0032440:CDS | 45.0% | |
| TTGGAAGTCACCAGAAGAGG+AGG | - | chr1_1:59572459-59572478 | Msa0032440:intron | 50.0% | |
| CTGGTGAAAACCTCCTCTTC+TGG | + | chr1_1:59572472-59572491 | None:intergenic | 50.0% | |
| ! | CAGAAGAGGAGGTTTTCACC+AGG | - | chr1_1:59572470-59572489 | Msa0032440:intron | 50.0% |
| AGGAAGCAGAACTCGACTAC+TGG | - | chr1_1:59573235-59573254 | Msa0032440:intron | 50.0% | |
| TATCCACTTTGTCCGGTAGG+AGG | + | chr1_1:59573754-59573773 | None:intergenic | 50.0% | |
| GCTCAAGATCCGGACATTGA+TGG | - | chr1_1:59573811-59573830 | Msa0032440:intron | 50.0% | |
| AAGCATCAACAGCCATGCGT+AGG | + | chr1_1:59573846-59573865 | None:intergenic | 50.0% | |
| TACGCATGGCTGTTGATGCT+TGG | - | chr1_1:59573845-59573864 | Msa0032440:intron | 50.0% | |
| GAAAAGAGGCCTAGTGTGTG+CGG | - | chr1_1:59574137-59574156 | Msa0032440:intron | 50.0% | |
| TAGTCGTAACCGCACACACT+AGG | + | chr1_1:59574149-59574168 | None:intergenic | 50.0% | |
| CAACAATGCAGCTGTGGAGT+TGG | - | chr1_1:59574208-59574227 | Msa0032440:CDS | 50.0% | |
| ! | TTAGATACCTTGGGCGCTGC+CGG | + | chr1_1:59572886-59572905 | None:intergenic | 55.0% |
| TGGAGGGGAGACCCCACTAA+AGG | - | chr1_1:59572111-59572130 | Msa0032440:CDS | 60.0% | |
| GAGCCGGCTGTCAAGAACCT+CGG | - | chr1_1:59573656-59573675 | Msa0032440:intron | 60.0% | |
| AGCCGGCTGTCAAGAACCTC+GGG | - | chr1_1:59573657-59573676 | Msa0032440:intron | 60.0% | |
| CACCCGAGGTTCTTGACAGC+CGG | + | chr1_1:59573662-59573681 | None:intergenic | 60.0% | |
| !! | GGTGCTTGTAGAAGCACCCG+AGG | + | chr1_1:59573676-59573695 | None:intergenic | 60.0% |
| AAACGGCGAGGTCCTCCTAC+CGG | - | chr1_1:59573739-59573758 | Msa0032440:intron | 60.0% | |
| GGTCCTCCTACCGGACAAAG+TGG | - | chr1_1:59573748-59573767 | Msa0032440:intron | 60.0% | |
| ! | CCTTGGGCGCTGCCGGTTGC+AGG | + | chr1_1:59572879-59572898 | None:intergenic | 75.0% |
| CCTGCAACCGGCAGCGCCCA+AGG | - | chr1_1:59572876-59572895 | Msa0032440:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 59571633 | 59574328 | 59571633 | ID=Msa0032440;Name=Msa0032440 |
| chr1_1 | mRNA | 59571633 | 59574328 | 59571633 | ID=Msa0032440-mRNA-1;Parent=Msa0032440;Name=Msa0032440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|6|0|386 |
| chr1_1 | exon | 59574165 | 59574328 | 59574165 | ID=Msa0032440-mRNA-1:exon:18403;Parent=Msa0032440-mRNA-1 |
| chr1_1 | exon | 59573470 | 59573545 | 59573470 | ID=Msa0032440-mRNA-1:exon:18402;Parent=Msa0032440-mRNA-1 |
| chr1_1 | exon | 59573064 | 59573223 | 59573064 | ID=Msa0032440-mRNA-1:exon:18401;Parent=Msa0032440-mRNA-1 |
| chr1_1 | exon | 59572627 | 59572737 | 59572627 | ID=Msa0032440-mRNA-1:exon:18400;Parent=Msa0032440-mRNA-1 |
| chr1_1 | exon | 59572067 | 59572398 | 59572067 | ID=Msa0032440-mRNA-1:exon:18399;Parent=Msa0032440-mRNA-1 |
| chr1_1 | exon | 59571633 | 59571950 | 59571633 | ID=Msa0032440-mRNA-1:exon:18398;Parent=Msa0032440-mRNA-1 |
| chr1_1 | CDS | 59574165 | 59574328 | 59574165 | ID=Msa0032440-mRNA-1:cds;Parent=Msa0032440-mRNA-1 |
| chr1_1 | CDS | 59573470 | 59573545 | 59573470 | ID=Msa0032440-mRNA-1:cds;Parent=Msa0032440-mRNA-1 |
| chr1_1 | CDS | 59573064 | 59573223 | 59573064 | ID=Msa0032440-mRNA-1:cds;Parent=Msa0032440-mRNA-1 |
| chr1_1 | CDS | 59572627 | 59572737 | 59572627 | ID=Msa0032440-mRNA-1:cds;Parent=Msa0032440-mRNA-1 |
| chr1_1 | CDS | 59572067 | 59572398 | 59572067 | ID=Msa0032440-mRNA-1:cds;Parent=Msa0032440-mRNA-1 |
| chr1_1 | CDS | 59571633 | 59571950 | 59571633 | ID=Msa0032440-mRNA-1:cds;Parent=Msa0032440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
