AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032630 MtrunA17_Chr1g0192411 83.516 91 15 0 2 92 4 94 2.77e-52 169
Msa0032630 MtrunA17_Chr8g0354661 65.823 79 27 0 10 88 37 115 1.64e-32 119
Msa0032630 MtrunA17_Chr3g0099141 60.241 83 33 0 6 88 36 118 9.06e-32 109
Msa0032630 MtrunA17_Chr3g0099131 63.291 79 29 0 10 88 41 119 1.55e-31 117
Msa0032630 MtrunA17_Chr1g0154031 62.025 79 30 0 10 88 76 154 4.43e-31 114
Msa0032630 MtrunA17_Chr3g0080861 59.494 79 32 0 10 88 37 115 1.36e-30 114
Msa0032630 MtrunA17_Chr2g0322521 61.728 81 31 0 8 88 27 107 7.25e-29 108
Msa0032630 MtrunA17_Chr1g0187761 51.899 79 38 0 10 88 12 90 2.18e-25 96.7
Msa0032630 MtrunA17_Chr7g0274581 47.619 84 44 0 10 93 12 95 6.31e-25 94.4
Msa0032630 MtrunA17_Chr8g0346561 50.000 84 42 0 10 93 12 95 6.85e-25 96.3
Msa0032630 MtrunA17_Chr5g0425591 50.588 85 41 1 5 88 4 88 6.92e-25 90.9
Msa0032630 MtrunA17_Chr1g0167691 49.367 79 40 0 10 88 12 90 1.79e-24 94.0
Msa0032630 MtrunA17_Chr7g0275911 47.500 80 42 0 10 89 12 91 7.17e-24 92.4
Msa0032630 MtrunA17_Chr4g0042671 49.367 79 40 0 10 88 12 90 9.70e-24 94.4
Msa0032630 MtrunA17_Chr4g0042611 46.988 83 44 0 2 84 4 86 1.57e-23 87.4
Msa0032630 MtrunA17_Chr6g0453751 44.628 121 47 5 2 102 11 131 1.64e-23 88.6
Msa0032630 MtrunA17_Chr5g0440781 52.439 82 38 1 8 88 10 91 1.84e-23 90.1
Msa0032630 MtrunA17_Chr2g0327351 50.000 86 42 1 5 89 7 92 2.76e-23 92.0
Msa0032630 MtrunA17_Chr1g0186061 52.381 84 40 0 9 92 19 102 2.79e-23 90.9
Msa0032630 MtrunA17_Chr7g0261281 47.619 84 44 0 10 93 12 95 2.87e-23 91.3
Msa0032630 MtrunA17_Chr6g0452271 49.438 89 45 0 5 93 7 95 3.20e-23 92.4
Msa0032630 MtrunA17_Chr4g0039971 48.810 84 43 0 5 88 8 91 3.82e-23 92.4
Msa0032630 MtrunA17_Chr7g0228231 51.899 79 38 0 10 88 14 92 6.03e-23 89.0
Msa0032630 MtrunA17_Chr5g0440761 52.439 82 38 1 8 88 10 91 6.54e-23 90.1
Msa0032630 MtrunA17_Chr2g0323411 44.944 89 49 0 5 93 7 95 7.26e-23 91.3
Msa0032630 MtrunA17_Chr1g0168661 52.439 82 39 0 11 92 22 103 8.00e-23 89.7
Msa0032630 MtrunA17_Chr5g0441141 52.439 82 38 1 8 88 10 91 8.08e-23 90.1
Msa0032630 MtrunA17_Chr7g0264641 50.000 86 42 1 5 89 7 92 8.11e-23 90.1
Msa0032630 MtrunA17_Chr4g0072751 51.163 86 41 1 5 89 7 92 8.77e-23 91.3
Msa0032630 MtrunA17_Chr5g0400821 50.000 86 42 1 5 89 7 92 1.03e-22 90.5
Msa0032630 MtrunA17_Chr3g0115821 47.126 87 46 0 2 88 4 90 1.11e-22 90.9
Msa0032630 MtrunA17_Chr4g0022891 50.000 84 42 0 6 89 8 91 1.20e-22 89.0
Msa0032630 MtrunA17_Chr4g0070641 47.500 80 42 0 10 89 12 91 1.22e-22 87.4
Msa0032630 MtrunA17_Chr4g0054391 48.837 86 43 1 5 89 7 92 1.77e-22 89.7
Msa0032630 MtrunA17_Chr5g0410961 46.429 84 45 0 5 88 7 90 1.93e-22 90.1
Msa0032630 MtrunA17_Chr1g0167661 48.101 79 41 0 10 88 12 90 2.17e-22 88.6
Msa0032630 MtrunA17_Chr4g0028311 47.674 86 44 1 5 89 7 92 2.35e-22 89.7
Msa0032630 MtrunA17_Chr6g0450101 48.235 85 44 0 4 88 8 92 2.44e-22 87.4
Msa0032630 MtrunA17_Chr3g0121241 46.429 84 45 0 10 93 42 125 3.70e-22 89.0
Msa0032630 MtrunA17_Chr1g0194301 49.398 83 42 0 6 88 29 111 4.12e-22 88.6
Msa0032630 MtrunA17_Chr1g0152011 50.000 86 42 1 5 89 7 92 4.72e-22 89.4
Msa0032630 MtrunA17_Chr1g0151941 48.810 84 42 1 6 88 8 91 5.47e-22 87.4
Msa0032630 MtrunA17_Chr4g0070611 46.429 84 45 0 10 93 12 95 5.83e-22 88.6
Msa0032630 MtrunA17_Chr6g0453471 48.193 83 43 0 6 88 8 90 6.44e-22 89.0
Msa0032630 MtrunA17_Chr2g0281071 46.429 84 45 0 10 93 13 96 7.33e-22 88.6
Msa0032630 MtrunA17_Chr4g0068061 48.750 80 41 0 10 89 12 91 7.64e-22 88.6
Msa0032630 MtrunA17_Chr2g0311221 47.619 84 44 0 5 88 9 92 8.59e-22 88.2
Msa0032630 MtrunA17_Chr6g0453211 46.988 83 44 0 6 88 8 90 9.11e-22 88.2
Msa0032630 MtrunA17_Chr5g0395281 46.988 83 44 0 6 88 8 90 9.66e-22 87.8
Msa0032630 MtrunA17_Chr3g0135311 48.837 86 43 1 5 89 7 92 1.53e-21 87.8
Msa0032630 MtrunA17_Chr1g0194291 45.977 87 47 0 2 88 13 99 1.57e-21 86.7
Msa0032630 MtrunA17_Chr7g0217741 48.101 79 41 0 10 88 12 90 1.93e-21 87.0
Msa0032630 MtrunA17_Chr2g0294811 43.820 89 50 0 10 98 12 100 2.06e-21 82.8
Msa0032630 MtrunA17_Chr8g0360111 44.828 87 48 0 3 89 18 104 2.46e-21 85.9
Msa0032630 MtrunA17_Chr8g0349261 46.250 80 42 1 10 88 13 92 2.90e-21 86.3
Msa0032630 MtrunA17_Chr7g0217221 46.429 84 45 0 5 88 7 90 3.91e-21 85.5
Msa0032630 MtrunA17_Chr2g0330041 45.000 80 44 0 9 88 11 90 4.48e-21 87.0
Msa0032630 MtrunA17_Chr5g0435101 42.697 89 51 0 5 93 6 94 5.07e-21 84.3
Msa0032630 MtrunA17_Chr4g0048511 45.238 84 46 0 10 93 13 96 6.56e-21 86.3
Msa0032630 MtrunA17_Chr5g0417821 46.067 89 44 1 10 94 7 95 6.70e-21 85.5
Msa0032630 MtrunA17_Chr5g0441131 47.059 85 44 1 5 88 4 88 6.95e-21 83.2
Msa0032630 MtrunA17_Chr1g0193801 50.000 80 40 0 9 88 11 90 7.86e-21 86.3
Msa0032630 MtrunA17_Chr4g0022881 50.000 84 42 0 6 89 8 91 8.17e-21 84.0
Msa0032630 MtrunA17_Chr4g0037141 48.101 79 41 0 11 89 13 91 8.41e-21 85.1
Msa0032630 MtrunA17_Chr1g0209661 46.835 79 42 0 10 88 27 105 9.41e-21 85.1
Msa0032630 MtrunA17_Chr4g0060721 48.101 79 41 0 10 88 13 91 1.35e-20 85.1
Msa0032630 MtrunA17_Chr8g0385321 48.718 78 40 0 11 88 13 90 1.55e-20 84.7
Msa0032630 MtrunA17_Chr8g0343831 47.619 84 44 0 10 93 8 91 1.96e-20 83.6
Msa0032630 MtrunA17_Chr7g0270891 47.500 80 42 0 9 88 11 90 2.04e-20 85.1
Msa0032630 MtrunA17_Chr1g0194951 46.250 80 43 0 10 89 12 91 2.23e-20 85.1
Msa0032630 MtrunA17_Chr6g0487491 48.193 83 42 1 5 86 7 89 2.78e-20 83.2
Msa0032630 MtrunA17_Chr1g0203411 43.038 79 45 0 10 88 12 90 3.30e-20 83.6
Msa0032630 MtrunA17_Chr7g0271241 47.500 80 42 0 9 88 11 90 4.83e-20 84.0
Msa0032630 MtrunA17_Chr1g0193371 47.500 80 42 0 9 88 11 90 4.89e-20 84.0
Msa0032630 MtrunA17_Chr4g0022911 48.101 79 41 0 10 88 13 91 5.43e-20 82.8
Msa0032630 MtrunA17_Chr5g0395221 45.455 77 42 0 10 86 12 88 5.43e-20 78.2
Msa0032630 MtrunA17_Chr7g0228891 45.238 84 46 0 5 88 7 90 5.63e-20 82.8
Msa0032630 MtrunA17_Chr4g0022901 48.101 79 41 0 10 88 13 91 6.12e-20 82.4
Msa0032630 MtrunA17_Chr2g0323351 44.706 85 47 0 5 89 7 91 6.62e-20 82.0
Msa0032630 MtrunA17_Chr7g0254411 48.101 79 41 0 10 88 12 90 9.15e-20 82.8
Msa0032630 MtrunA17_Chr8g0342531 37.113 97 61 0 5 101 7 103 1.07e-19 79.7
Msa0032630 MtrunA17_Chr3g0092401 45.570 79 43 0 10 88 13 91 1.38e-19 82.0
Msa0032630 MtrunA17_Chr4g0032401 45.122 82 45 0 7 88 14 95 1.43e-19 82.4
Msa0032630 MtrunA17_Chr7g0228991 46.250 80 43 0 10 89 29 108 1.55e-19 81.6
Msa0032630 MtrunA17_Chr2g0323321 42.353 85 49 0 5 89 6 90 1.55e-19 77.8
Msa0032630 MtrunA17_Chr4g0057031 45.238 84 46 0 5 88 7 90 1.56e-19 81.3
Msa0032630 MtrunA17_Chr3g0110351 44.048 84 47 0 5 88 7 90 1.92e-19 81.6
Msa0032630 MtrunA17_Chr3g0131121 44.578 83 46 0 11 93 13 95 2.56e-19 81.3
Msa0032630 MtrunA17_Chr4g0022931 46.835 79 42 0 10 88 13 91 2.86e-19 80.9
Msa0032630 MtrunA17_Chr5g0434571 44.048 84 47 0 5 88 43 126 2.95e-19 81.6
Msa0032630 MtrunA17_Chr5g0434831 43.373 83 47 0 7 89 4 86 3.68e-19 79.0
Msa0032630 MtrunA17_Chr7g0220341 43.023 86 47 1 6 89 21 106 4.42e-19 80.1
Msa0032630 MtrunA17_Chr4g0068921 45.455 88 48 0 1 88 15 102 5.33e-19 78.6
Msa0032630 MtrunA17_Chr6g0460661 42.683 82 46 1 7 88 11 91 5.41e-19 77.8
Msa0032630 MtrunA17_Chr5g0434931 43.373 83 47 0 7 89 32 114 6.52e-19 80.1
Msa0032630 MtrunA17_Chr5g0434911 43.373 83 47 0 7 89 18 100 7.67e-19 79.7
Msa0032630 MtrunA17_Chr5g0397231 44.048 84 47 0 5 88 7 90 8.72e-19 80.1
Msa0032630 MtrunA17_Chr4g0055981 41.111 90 53 0 4 93 49 138 9.58e-19 78.6
Msa0032630 MtrunA17_Chr5g0434841 47.500 80 42 0 10 89 20 99 1.13e-18 79.7
Msa0032630 MtrunA17_Chr4g0013361 46.250 80 42 1 10 88 10 89 1.22e-18 79.3
Msa0032630 MtrunA17_Chr8g0342511 42.500 80 46 0 5 84 7 86 1.24e-18 75.1
Msa0032630 MtrunA17_Chr5g0417621 41.860 86 49 1 7 92 129 213 1.83e-18 80.1
Msa0032630 MtrunA17_Chr8g0334881 44.048 84 46 1 6 88 6 89 2.08e-18 79.0
Msa0032630 MtrunA17_Chr1g0211161 43.750 80 45 0 9 88 12 91 2.10e-18 77.8
Msa0032630 MtrunA17_Chr3g0117091 43.750 80 45 0 9 88 11 90 3.90e-18 78.6
Msa0032630 MtrunA17_Chr1g0180391 48.810 84 43 0 10 93 19 102 3.93e-18 77.0
Msa0032630 MtrunA17_Chr8g0387421 41.667 84 49 0 5 88 7 90 4.98e-18 78.2
Msa0032630 MtrunA17_Chr3g0103281 44.444 81 45 0 9 89 11 91 5.24e-18 78.2
Msa0032630 MtrunA17_Chr2g0327821 42.857 84 48 0 10 93 6 89 7.19e-18 76.3
Msa0032630 MtrunA17_Chr4g0058631 42.500 80 46 0 9 88 11 90 9.02e-18 77.8
Msa0032630 MtrunA17_Chr7g0269831 50.000 80 40 0 10 89 12 91 1.06e-17 77.4
Msa0032630 MtrunA17_Chr2g0328771 44.304 79 44 0 10 88 20 98 1.11e-17 77.0
Msa0032630 MtrunA17_Chr8g0342541 42.857 84 48 0 5 88 7 90 1.20e-17 77.4
Msa0032630 MtrunA17_Chr2g0309911 43.750 80 45 0 9 88 10 89 1.29e-17 76.6
Msa0032630 MtrunA17_Chr1g0203441 46.154 78 42 0 11 88 14 91 1.47e-17 76.3
Msa0032630 MtrunA17_Chr6g0470971 44.444 81 45 0 8 88 12 92 2.18e-17 75.9
Msa0032630 MtrunA17_Chr2g0293911 46.988 83 44 0 6 88 20 102 2.21e-17 76.3
Msa0032630 MtrunA17_Chr8g0342481 41.975 81 46 1 9 88 11 91 2.30e-17 76.6
Msa0032630 MtrunA17_Chr4g0044421 43.590 78 44 0 12 89 14 91 2.32e-17 74.3
Msa0032630 MtrunA17_Chr3g0088461 41.975 81 47 0 8 88 20 100 2.37e-17 76.3
Msa0032630 MtrunA17_Chr6g0454921 35.652 115 73 1 12 126 15 128 2.52e-17 74.3
Msa0032630 MtrunA17_Chr7g0240821 48.000 75 39 0 15 89 6 80 2.63e-17 74.7
Msa0032630 MtrunA17_Chr4g0042501 43.210 81 45 1 12 92 105 184 3.30e-17 76.3
Msa0032630 MtrunA17_Chr8g0342521 45.000 80 44 0 9 88 11 90 3.95e-17 75.9
Msa0032630 MtrunA17_Chr1g0193901 52.747 91 40 3 1 88 1 91 5.60e-17 71.2
Msa0032630 MtrunA17_Chr1g0193891 52.747 91 40 3 1 88 1 91 5.60e-17 71.2
Msa0032630 MtrunA17_Chr1g0193871 52.747 91 40 3 1 88 1 91 5.60e-17 71.2
Msa0032630 MtrunA17_Chr1g0193881 52.747 91 40 3 1 88 1 91 5.60e-17 71.2
Msa0032630 MtrunA17_Chr4g0030881 41.111 90 46 1 11 93 8 97 5.91e-17 74.3
Msa0032630 MtrunA17_Chr4g0008551 46.914 81 42 1 12 92 38 117 7.08e-17 75.1
Msa0032630 MtrunA17_Chr8g0342461 37.778 90 55 1 9 97 11 100 7.88e-17 71.6
Msa0032630 MtrunA17_Chr5g0401731 44.444 81 44 1 12 92 15 94 8.38e-17 74.7
Msa0032630 MtrunA17_Chr3g0133601 41.975 81 46 1 12 92 37 116 2.51e-16 72.0
Msa0032630 MtrunA17_Chr8g0342471 36.667 90 56 1 9 97 11 100 4.93e-16 69.7
Msa0032630 MtrunA17_Chr6g0480581 41.975 81 46 1 12 92 4 83 9.06e-16 70.9
Msa0032630 MtrunA17_Chr4g0053431 43.210 81 45 1 12 92 5 84 2.20e-15 70.5
Msa0032630 MtrunA17_Chr1g0157731 41.772 79 45 1 10 88 89 166 2.21e-15 71.2
Msa0032630 MtrunA17_Chr3g0125801 41.758 91 52 1 2 92 6 95 4.95e-15 69.7
Msa0032630 MtrunA17_Chr4g0058991 38.372 86 52 1 8 93 205 289 5.54e-15 70.1
Msa0032630 MtrunA17_Chr5g0429661 46.835 79 41 1 10 88 120 197 1.27e-14 68.9
Msa0032630 MtrunA17_Chr3g0139671 39.241 79 47 1 10 88 83 160 1.98e-14 68.6
Msa0032630 MtrunA17_Chr5g0437321 41.304 92 52 2 2 92 8 98 2.50e-14 67.8
Msa0032630 MtrunA17_Chr6g0460671 42.857 77 43 1 12 88 99 174 2.99e-14 67.8
Msa0032630 MtrunA17_Chr7g0238631 41.772 79 45 1 10 88 111 188 2.15e-13 65.5
Msa0032630 MtrunA17_Chr7g0238631 44.048 84 41 3 9 89 58 138 2.03e-11 60.1
Msa0032630 MtrunA17_Chr3g0117511 36.585 82 51 1 12 93 183 263 3.86e-13 64.7
Msa0032630 MtrunA17_Chr7g0254261 44.444 81 44 1 12 92 89 168 9.93e-13 63.5
Msa0032630 MtrunA17_Chr7g0247131 53.333 45 21 0 44 88 12 56 1.60e-12 62.4
Msa0032630 MtrunA17_Chr7g0238651 41.333 75 42 1 15 87 10 84 4.87e-12 61.6
Msa0032630 MtrunA17_Chr7g0228531 39.024 82 48 2 12 93 220 299 1.23e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032630 AT5G06100.1 65.060 83 29 0 6 88 28 110 1.22e-34 124
Msa0032630 AT5G06100.5 65.060 83 29 0 6 88 28 110 2.63e-34 124
Msa0032630 AT5G06100.2 65.060 83 29 0 6 88 28 110 2.63e-34 124
Msa0032630 AT5G06100.3 65.060 83 29 0 6 88 28 110 2.63e-34 124
Msa0032630 AT5G06100.4 65.060 83 29 0 6 88 28 110 2.63e-34 124
Msa0032630 AT2G32460.2 64.557 79 28 0 10 88 6 84 7.70e-34 122
Msa0032630 AT2G32460.1 64.557 79 28 0 10 88 18 96 8.66e-34 122
Msa0032630 AT3G11440.2 64.557 79 28 0 10 88 41 119 1.31e-33 122
Msa0032630 AT3G11440.3 64.557 79 28 0 10 88 41 119 2.65e-33 122
Msa0032630 AT3G11440.4 64.557 79 28 0 10 88 41 119 2.65e-33 122
Msa0032630 AT3G11440.1 64.557 79 28 0 10 88 41 119 2.65e-33 122
Msa0032630 AT5G55020.1 62.025 79 30 0 10 88 26 104 5.02e-31 115
Msa0032630 AT4G26930.1 62.025 79 30 0 10 88 19 97 9.69e-30 110
Msa0032630 AT2G26960.1 54.545 77 35 0 12 88 22 98 1.28e-27 105
Msa0032630 AT5G40330.1 50.602 83 41 0 11 93 13 95 2.85e-25 95.9
Msa0032630 AT5G14750.1 49.398 83 42 0 11 93 17 99 3.46e-24 92.4
Msa0032630 AT3G27920.1 51.807 83 40 0 11 93 15 97 3.50e-24 93.2
Msa0032630 AT3G01530.1 51.899 79 38 0 10 88 25 103 3.99e-24 92.4
Msa0032630 AT1G35515.1 51.250 80 39 0 10 89 12 91 2.05e-23 90.9
Msa0032630 AT5G40350.1 51.899 79 38 0 10 88 17 95 2.26e-23 90.9
Msa0032630 AT3G49690.1 52.326 86 40 1 5 89 7 92 3.74e-23 92.0
Msa0032630 AT3G02940.2 48.810 84 43 0 5 88 7 90 3.94e-23 92.0
Msa0032630 AT5G65790.1 51.765 85 40 1 6 89 8 92 3.97e-23 92.8
Msa0032630 AT3G23250.1 48.101 79 41 0 10 88 12 90 6.19e-23 90.9
Msa0032630 AT5G16770.4 48.193 83 43 0 6 88 8 90 6.75e-23 91.7
Msa0032630 AT5G16770.3 48.193 83 43 0 6 88 8 90 6.75e-23 91.7
Msa0032630 AT3G02940.1 48.810 84 43 0 5 88 7 90 6.83e-23 91.7
Msa0032630 AT3G02940.3 48.810 84 43 0 5 88 7 90 6.83e-23 91.7
Msa0032630 AT3G01140.1 47.727 88 46 0 1 88 46 133 7.75e-23 92.0
Msa0032630 AT3G01140.2 49.398 83 42 0 6 88 8 90 8.70e-23 91.7
Msa0032630 AT4G09460.1 49.367 79 40 0 11 89 13 91 8.96e-23 89.7
Msa0032630 AT1G79180.1 46.429 84 45 0 5 88 9 92 9.30e-23 90.9
Msa0032630 AT5G16770.1 47.619 84 44 0 5 88 7 90 9.97e-23 91.3
Msa0032630 AT5G16770.2 47.619 84 44 0 5 88 7 90 9.97e-23 91.3
Msa0032630 AT4G28110.1 45.455 88 48 0 6 93 8 95 1.09e-22 90.5
Msa0032630 AT5G23000.1 48.837 86 43 1 5 89 7 92 1.15e-22 90.9
Msa0032630 AT3G27810.1 50.633 79 39 0 10 88 20 98 1.60e-22 89.0
Msa0032630 AT2G36890.1 51.163 86 41 1 5 89 7 92 1.63e-22 90.1
Msa0032630 AT4G21440.1 38.760 129 72 1 10 131 12 140 1.63e-22 90.9
Msa0032630 AT5G15310.4 47.126 87 46 0 2 88 4 90 1.87e-22 89.0
Msa0032630 AT2G31180.1 48.101 79 41 0 10 88 12 90 1.87e-22 89.0
Msa0032630 AT4G13480.1 53.659 82 38 0 11 92 7 88 2.36e-22 89.0
Msa0032630 AT5G57620.1 50.588 85 41 1 6 89 8 92 2.44e-22 90.1
Msa0032630 AT2G36890.2 51.163 86 41 1 5 89 48 133 3.20e-22 90.1
Msa0032630 AT4G37780.1 48.837 86 43 1 5 89 7 92 3.60e-22 89.4
Msa0032630 AT5G07700.1 50.602 83 41 0 10 92 12 94 4.22e-22 89.7
Msa0032630 AT5G07700.2 50.602 83 41 0 10 92 12 94 4.22e-22 89.7
Msa0032630 AT5G15310.2 48.193 83 43 0 6 88 8 90 4.68e-22 89.4
Msa0032630 AT1G34670.1 48.193 83 43 0 6 88 8 90 4.83e-22 89.7
Msa0032630 AT3G13540.1 45.238 84 46 0 10 93 23 106 5.11e-22 87.8
Msa0032630 AT5G15310.1 48.193 83 43 0 6 88 8 90 5.46e-22 89.4
Msa0032630 AT5G49330.1 50.000 80 40 0 10 89 12 91 8.86e-22 89.0
Msa0032630 AT3G30210.1 52.439 82 39 0 11 92 28 109 9.93e-22 87.8
Msa0032630 AT4G01680.3 48.750 80 41 0 9 88 11 90 1.07e-21 87.0
Msa0032630 AT1G22640.1 44.706 85 47 0 5 89 7 91 1.08e-21 87.4
Msa0032630 AT5G65230.1 46.591 88 47 0 2 89 4 91 1.16e-21 88.2
Msa0032630 AT5G61420.2 49.398 83 42 0 10 92 12 94 1.19e-21 88.6
Msa0032630 AT5G35550.1 46.250 80 43 0 10 89 14 93 1.22e-21 87.0
Msa0032630 AT3G61250.1 43.373 83 47 0 6 88 8 90 1.51e-21 87.4
Msa0032630 AT5G07690.1 49.398 83 42 0 10 92 12 94 2.10e-21 87.8
Msa0032630 AT5G10280.1 46.429 84 45 0 5 88 7 90 2.63e-21 87.4
Msa0032630 AT1G74080.1 47.619 84 44 0 10 93 12 95 3.68e-21 87.0
Msa0032630 AT4G01680.1 48.750 80 41 0 9 88 11 90 4.12e-21 87.0
Msa0032630 AT3G28910.1 47.619 84 44 0 5 88 7 90 4.69e-21 86.7
Msa0032630 AT1G18570.1 49.398 83 42 0 10 92 13 95 6.08e-21 86.7
Msa0032630 AT3G24310.1 51.220 82 40 0 11 92 19 100 6.39e-21 85.5
Msa0032630 AT4G05100.1 48.101 79 41 0 10 88 13 91 7.69e-21 85.9
Msa0032630 AT2G47460.1 47.500 80 42 0 10 89 12 91 7.96e-21 86.7
Msa0032630 AT1G16490.1 44.578 83 46 0 6 88 10 92 8.94e-21 85.1
Msa0032630 AT1G06180.1 49.367 79 40 0 10 88 12 90 1.28e-20 84.3
Msa0032630 AT1G74650.1 46.835 79 42 0 10 88 12 90 1.40e-20 85.5
Msa0032630 AT1G25340.1 47.436 78 41 0 11 88 19 96 1.53e-20 84.7
Msa0032630 AT1G08810.1 46.429 84 45 0 5 88 7 90 2.32e-20 84.3
Msa0032630 AT3G28470.1 44.944 89 49 0 5 93 7 95 2.35e-20 84.7
Msa0032630 AT2G16720.1 45.000 80 44 0 10 89 12 91 2.46e-20 84.0
Msa0032630 AT3G62610.1 46.835 79 42 0 10 88 12 90 2.81e-20 84.7
Msa0032630 AT5G16600.1 45.238 84 46 0 5 88 7 90 3.31e-20 84.3
Msa0032630 AT5G59780.3 46.988 83 44 0 11 93 9 91 3.41e-20 82.8
Msa0032630 AT5G62470.2 48.101 79 41 0 10 88 12 90 3.72e-20 84.3
Msa0032630 AT3G12820.1 44.048 84 47 0 5 88 9 92 3.85e-20 82.8
Msa0032630 AT1G09540.1 48.235 85 44 0 9 93 11 95 4.46e-20 84.3
Msa0032630 AT5G26660.1 47.500 80 42 0 9 88 11 90 4.47e-20 84.3
Msa0032630 AT1G68320.1 48.101 79 41 0 10 88 19 97 4.50e-20 83.6
Msa0032630 AT4G38620.1 46.341 82 44 0 12 93 14 95 4.83e-20 83.2
Msa0032630 AT1G57560.2 48.750 80 41 0 9 88 11 90 5.13e-20 83.2
Msa0032630 AT5G14340.1 45.238 84 46 0 5 88 19 102 6.45e-20 82.8
Msa0032630 AT1G57560.1 48.750 80 41 0 9 88 11 90 7.97e-20 83.2
Msa0032630 AT1G18710.1 39.773 88 53 0 6 93 8 95 1.07e-19 82.0
Msa0032630 AT3G47600.1 45.783 83 45 0 6 88 8 90 1.08e-19 83.2
Msa0032630 AT3G46130.1 45.783 83 45 0 11 93 10 92 1.11e-19 82.0
Msa0032630 AT5G52600.1 45.000 80 44 0 10 89 12 91 1.22e-19 80.9
Msa0032630 AT2G26950.1 46.988 83 44 0 10 92 16 98 1.58e-19 83.2
Msa0032630 AT1G56160.1 40.476 84 50 0 5 88 9 92 2.04e-19 82.0
Msa0032630 AT5G54230.1 44.304 79 44 0 10 88 12 90 2.85e-19 81.6
Msa0032630 AT1G66230.1 42.857 84 48 0 5 88 7 90 3.10e-19 81.3
Msa0032630 AT1G48000.1 43.038 79 45 0 10 88 32 110 4.34e-19 80.1
Msa0032630 AT5G60890.1 46.835 79 42 0 10 88 12 90 4.61e-19 80.9
Msa0032630 AT4G34990.1 46.341 82 44 0 12 93 14 95 5.31e-19 80.5
Msa0032630 AT4G17785.2 48.101 79 41 0 10 88 13 91 5.79e-19 81.3
Msa0032630 AT1G74430.1 42.169 83 48 0 6 88 8 90 6.35e-19 80.1
Msa0032630 AT4G17785.1 48.101 79 41 0 10 88 13 91 6.58e-19 81.3
Msa0032630 AT5G62470.1 48.101 79 40 1 10 88 12 89 7.34e-19 80.9
Msa0032630 AT5G12870.1 43.750 80 45 0 9 88 17 96 7.60e-19 80.1
Msa0032630 AT4G22680.1 44.048 84 47 0 5 88 7 90 8.80e-19 79.7
Msa0032630 AT4G01680.2 42.391 92 41 1 9 88 11 102 1.04e-18 80.5
Msa0032630 AT3G13890.2 43.750 80 45 0 9 88 11 90 1.54e-18 80.1
Msa0032630 AT3G60460.1 38.679 106 61 2 5 109 6 108 1.56e-18 79.7
Msa0032630 AT1G63910.1 42.857 84 48 0 5 88 7 90 3.94e-18 79.0
Msa0032630 AT3G55730.1 46.154 78 41 1 12 89 56 132 4.29e-18 79.3
Msa0032630 AT3G50060.1 46.914 81 42 1 12 92 6 85 4.49e-18 78.2
Msa0032630 AT1G66370.1 41.860 86 50 0 4 89 2 87 6.10e-18 77.0
Msa0032630 AT5G62320.1 41.758 91 46 1 5 88 8 98 6.40e-18 77.0
Msa0032630 AT3G12720.1 43.750 80 45 0 9 88 21 100 9.55e-18 77.4
Msa0032630 AT2G47190.1 43.373 83 47 0 6 88 16 98 1.02e-17 77.0
Msa0032630 AT1G25340.2 44.872 78 38 1 11 88 19 91 1.21e-17 77.0
Msa0032630 AT1G25340.3 44.872 78 38 1 11 88 19 91 1.31e-17 77.0
Msa0032630 AT3G53200.1 46.429 84 45 0 10 93 9 92 1.92e-17 75.9
Msa0032630 AT3G08500.1 43.750 80 45 0 9 88 29 108 2.04e-17 77.0
Msa0032630 AT4G25560.1 46.250 80 43 0 9 88 9 88 2.40e-17 76.3
Msa0032630 AT5G58850.1 45.122 82 44 1 7 88 100 180 3.41e-17 76.6
Msa0032630 AT4G12350.1 42.857 84 48 0 5 88 7 90 3.55e-17 75.9
Msa0032630 AT3G48920.1 45.000 80 44 0 9 88 17 96 4.05e-17 75.1
Msa0032630 AT5G67300.1 45.679 81 43 1 12 92 6 85 4.25e-17 75.9
Msa0032630 AT5G56110.1 42.500 80 46 0 10 89 12 91 8.25e-17 75.1
Msa0032630 AT1G79180.2 34.188 117 44 2 5 88 9 125 1.07e-16 74.7
Msa0032630 AT4G37260.1 43.210 81 45 1 12 92 13 92 1.93e-16 73.9
Msa0032630 AT5G49620.1 46.835 79 42 0 10 88 26 104 3.30e-16 73.2
Msa0032630 AT1G66380.1 42.500 80 46 0 10 89 8 87 3.65e-16 70.1
Msa0032630 AT3G06490.1 46.988 83 44 0 6 88 15 97 4.37e-16 73.2
Msa0032630 AT2G23290.1 44.444 81 44 1 12 92 13 92 4.73e-16 72.8
Msa0032630 AT5G11050.1 45.455 77 41 1 12 88 105 180 5.60e-16 73.2
Msa0032630 AT3G13890.1 38.202 89 46 1 9 88 11 99 5.66e-16 73.2
Msa0032630 AT1G56650.1 42.500 80 46 0 10 89 8 87 9.24e-16 71.2
Msa0032630 AT1G17950.1 41.975 81 46 1 12 92 5 84 1.28e-15 70.9
Msa0032630 AT1G66380.2 37.647 85 53 0 5 89 3 87 1.93e-15 67.8
Msa0032630 AT3G09230.1 46.154 78 41 1 12 89 55 131 2.05e-15 71.6
Msa0032630 AT1G69560.2 42.169 83 47 1 10 92 121 202 2.38e-15 71.2
Msa0032630 AT1G26780.1 43.373 83 46 1 10 92 96 177 2.57e-15 70.5
Msa0032630 AT1G69560.1 42.169 83 47 1 10 92 105 186 2.73e-15 70.9
Msa0032630 AT3G29020.1 40.506 79 46 1 11 89 64 141 3.11e-15 69.7
Msa0032630 AT1G26780.2 43.373 83 46 1 10 92 96 177 4.22e-15 70.5
Msa0032630 AT5G17800.1 42.697 89 50 1 4 92 85 172 6.20e-15 70.1
Msa0032630 AT4G33450.1 39.796 98 51 3 1 92 3 98 1.41e-14 68.2
Msa0032630 AT3G29020.2 40.506 79 46 1 11 89 66 143 1.42e-14 68.9
Msa0032630 AT4G32730.1 40.506 79 46 1 10 88 85 162 1.79e-14 69.3
Msa0032630 AT4G32730.5 40.506 79 46 1 10 88 85 162 1.83e-14 69.3
Msa0032630 AT4G32730.4 40.506 79 46 1 10 88 85 162 1.83e-14 69.3
Msa0032630 AT4G32730.3 40.506 79 46 1 10 88 85 162 1.83e-14 69.3
Msa0032630 AT4G32730.2 40.506 79 46 1 10 88 85 162 1.83e-14 69.3
Msa0032630 AT1G66390.1 42.500 80 46 0 10 89 8 87 1.85e-14 67.8
Msa0032630 AT4G18770.1 37.209 86 53 1 8 93 213 297 2.63e-14 68.6
Msa0032630 AT5G49620.2 46.667 75 40 0 10 84 26 100 3.50e-14 67.8
Msa0032630 AT5G02320.1 41.772 79 45 1 10 88 125 202 5.02e-14 67.8
Msa0032630 AT5G02320.2 41.772 79 45 1 10 88 125 202 5.02e-14 67.8
Msa0032630 AT3G09370.3 40.506 79 46 1 10 88 141 218 5.42e-14 67.8
Msa0032630 AT3G09370.2 40.506 79 46 1 10 88 133 210 5.52e-14 67.8
Msa0032630 AT3G09370.1 40.506 79 46 1 10 88 128 205 5.61e-14 67.8
Msa0032630 AT5G39700.1 43.333 90 46 2 13 98 57 145 7.62e-14 65.5
Msa0032630 AT5G02320.3 41.772 79 45 1 10 88 65 142 1.06e-13 67.0
Msa0032630 AT5G52260.1 45.000 80 44 0 9 88 11 90 1.91e-13 65.5
Msa0032630 AT4G00540.2 41.463 82 44 2 10 88 101 181 4.27e-13 65.1
Msa0032630 AT5G40360.1 39.286 84 50 1 10 93 156 238 5.03e-13 64.7
Msa0032630 AT5G11510.5 36.709 79 49 1 10 88 79 156 5.68e-13 64.7
Msa0032630 AT5G11510.5 40.230 87 46 3 9 92 26 109 5.36e-11 59.3
Msa0032630 AT5G11510.2 36.709 79 49 1 10 88 79 156 5.70e-13 64.7
Msa0032630 AT5G11510.2 40.230 87 46 3 9 92 26 109 5.38e-11 59.3
Msa0032630 AT5G11510.3 36.709 79 49 1 10 88 79 156 5.79e-13 64.7
Msa0032630 AT5G11510.3 40.230 87 46 3 9 92 26 109 5.47e-11 59.3
Msa0032630 AT5G11510.1 36.709 79 49 1 10 88 79 156 5.79e-13 64.7
Msa0032630 AT5G11510.1 40.230 87 46 3 9 92 26 109 5.47e-11 59.3
Msa0032630 AT5G11510.4 36.709 79 49 1 10 88 79 156 5.79e-13 64.7
Msa0032630 AT5G11510.4 40.230 87 46 3 9 92 26 109 5.47e-11 59.3
Msa0032630 AT4G00540.1 41.463 82 44 2 10 88 99 179 6.48e-13 64.7
Msa0032630 AT1G73410.2 43.210 81 45 1 12 92 6 85 1.05e-12 62.4
Msa0032630 AT1G73410.1 43.210 81 45 1 12 92 6 85 1.56e-12 62.8
Msa0032630 AT2G39880.1 42.308 78 44 1 12 89 50 126 2.98e-12 62.8
Msa0032630 AT5G14750.3 51.020 49 24 0 45 93 17 65 3.39e-12 60.5
Msa0032630 AT5G26660.2 55.556 45 20 0 44 88 15 59 3.79e-12 62.0
Msa0032630 AT3G27785.1 35.366 82 52 1 12 93 189 269 6.90e-12 61.6
Msa0032630 AT3G53200.2 56.000 50 22 0 44 93 10 59 9.40e-12 60.1
Msa0032630 AT5G59780.2 54.000 50 23 0 44 93 21 70 2.73e-11 58.9
Msa0032630 AT2G37630.1 42.667 75 41 1 15 87 7 81 3.15e-11 59.7
Msa0032630 AT3G12820.2 56.818 44 19 0 45 88 1 44 3.22e-11 58.5
Msa0032630 AT3G46130.4 54.000 50 23 0 44 93 21 70 4.03e-11 58.5
Msa0032630 AT3G46130.3 49.091 55 28 0 39 93 6 60 4.27e-11 58.5
Msa0032630 AT5G40350.2 60.000 45 18 0 44 88 6 50 5.40e-11 57.4

Find 26 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTTCTTCTCTAGTAAT+TGG 0.206189 1_1:-59808159 None:intergenic
AAAGAATATGTGAGAAATTA+TGG 0.216509 1_1:+59808030 Msa0032630:CDS
ATGGTTAGGAATTGCTTATT+TGG 0.224051 1_1:+59808284 Msa0032630:CDS
GAAATTATGGAGAGGGTAAT+TGG 0.224804 1_1:+59808043 Msa0032630:CDS
CCTTAACCATAGAGACCATT+TGG 0.350185 1_1:-59808214 None:intergenic
TCGGACCCAAATGGTCTCTA+TGG 0.374608 1_1:+59808208 Msa0032630:CDS
AGACCATTTGGGTCCGATCT+TGG 0.400185 1_1:-59808202 None:intergenic
AAATTATGGAGAGGGTAATT+GGG 0.400713 1_1:+59808044 Msa0032630:CDS
CCAAATGGTCTCTATGGTTA+AGG 0.425714 1_1:+59808214 Msa0032630:CDS
AACAAATATATCCTATGGTT+AGG 0.447208 1_1:+59808270 Msa0032630:CDS
CGTACGGTGCTGATACTACT+AGG 0.461056 1_1:+59807965 Msa0032630:CDS
CCTACATCCTAATTTAGAAA+AGG 0.472729 1_1:+59808134 Msa0032630:CDS
GTAAAAGTTGTCGTCTAAGA+TGG 0.488070 1_1:+59808103 Msa0032630:CDS
CTTAACCATAGAGACCATTT+GGG 0.497835 1_1:-59808213 None:intergenic
GGACTGTATATCCTATGGTC+AGG 0.520231 1_1:+59808238 Msa0032630:CDS
AAGGAGGACTGTATATCCTA+TGG 0.529147 1_1:+59808233 Msa0032630:CDS
GTTGAATTGCATGCCAAGAT+CGG 0.529597 1_1:+59808189 Msa0032630:CDS
TATGTGAGAAATTATGGAGA+GGG 0.551893 1_1:+59808036 Msa0032630:CDS
TAGTTATTCATCATGTCGTA+CGG 0.558806 1_1:+59807949 None:intergenic
ATGCCAAGATCGGACCCAAA+TGG 0.560899 1_1:+59808199 Msa0032630:CDS
AATAAGCAATTCCTAACCAT+AGG 0.585656 1_1:-59808281 None:intergenic
TGGAGAGGGTAATTGGGATG+CGG 0.617793 1_1:+59808050 Msa0032630:CDS
AATGGTCTCTATGGTTAAGG+AGG 0.630284 1_1:+59808217 Msa0032630:CDS
AGGACCATGGTCATTACATG+AGG 0.640554 1_1:+59807996 Msa0032630:CDS
GCATCCTCATGTAATGACCA+TGG 0.663000 1_1:-59808000 None:intergenic
ATATGTGAGAAATTATGGAG+AGG 0.669714 1_1:+59808035 Msa0032630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAACAAATATATCCTA+TGG + chr1_1:59808265-59808284 Msa0032630:CDS 15.0%
!! AAAGAATATGTGAGAAATTA+TGG + chr1_1:59808030-59808049 Msa0032630:CDS 20.0%
!! ATTGGAACCTTTTCTAAATT+AGG - chr1_1:59808144-59808163 None:intergenic 25.0%
! AACAAATATATCCTATGGTT+AGG + chr1_1:59808270-59808289 Msa0032630:CDS 25.0%
! GATACTACTAGGTTGAAAAA+AGG + chr1_1:59807976-59807995 Msa0032630:CDS 30.0%
ATATGTGAGAAATTATGGAG+AGG + chr1_1:59808035-59808054 Msa0032630:CDS 30.0%
TATGTGAGAAATTATGGAGA+GGG + chr1_1:59808036-59808055 Msa0032630:CDS 30.0%
AAATTATGGAGAGGGTAATT+GGG + chr1_1:59808044-59808063 Msa0032630:CDS 30.0%
TTTACCACATCGAAAAAGTT+CGG - chr1_1:59808088-59808107 None:intergenic 30.0%
! CCTTTTCTAAATTAGGATGT+AGG - chr1_1:59808137-59808156 None:intergenic 30.0%
CCTACATCCTAATTTAGAAA+AGG + chr1_1:59808134-59808153 Msa0032630:CDS 30.0%
TGTTCTTCTTCTCTAGTAAT+TGG - chr1_1:59808162-59808181 None:intergenic 30.0%
! TTTTTATCAATCCTGACCAT+AGG - chr1_1:59808252-59808271 None:intergenic 30.0%
AATAAGCAATTCCTAACCAT+AGG - chr1_1:59808284-59808303 None:intergenic 30.0%
ATGGTTAGGAATTGCTTATT+TGG + chr1_1:59808284-59808303 Msa0032630:CDS 30.0%
! CCAAAAAGATTAATTTGACG+AGG - chr1_1:59808314-59808333 None:intergenic 30.0%
! CCTCGTCAAATTAATCTTTT+TGG + chr1_1:59808311-59808330 Msa0032630:CDS 30.0%
GAAATTATGGAGAGGGTAAT+TGG + chr1_1:59808043-59808062 Msa0032630:CDS 35.0%
!!! AAAACCGAACTTTTTCGATG+TGG + chr1_1:59808081-59808100 Msa0032630:CDS 35.0%
GTAAAAGTTGTCGTCTAAGA+TGG + chr1_1:59808103-59808122 Msa0032630:CDS 35.0%
CTTAACCATAGAGACCATTT+GGG - chr1_1:59808216-59808235 None:intergenic 35.0%
! CTAGGTTGAAAAAAGGACCA+TGG + chr1_1:59807983-59808002 Msa0032630:CDS 40.0%
GTTGAATTGCATGCCAAGAT+CGG + chr1_1:59808189-59808208 Msa0032630:CDS 40.0%
CCTTAACCATAGAGACCATT+TGG - chr1_1:59808217-59808236 None:intergenic 40.0%
CCAAATGGTCTCTATGGTTA+AGG + chr1_1:59808214-59808233 Msa0032630:CDS 40.0%
AATGGTCTCTATGGTTAAGG+AGG + chr1_1:59808217-59808236 Msa0032630:CDS 40.0%
AAGGAGGACTGTATATCCTA+TGG + chr1_1:59808233-59808252 Msa0032630:CDS 40.0%
AGGACCATGGTCATTACATG+AGG + chr1_1:59807996-59808015 Msa0032630:CDS 45.0%
GCATCCTCATGTAATGACCA+TGG - chr1_1:59808003-59808022 None:intergenic 45.0%
GGACTGTATATCCTATGGTC+AGG + chr1_1:59808238-59808257 Msa0032630:CDS 45.0%
!! CGTACGGTGCTGATACTACT+AGG + chr1_1:59807965-59807984 Msa0032630:CDS 50.0%
TGGAGAGGGTAATTGGGATG+CGG + chr1_1:59808050-59808069 Msa0032630:CDS 50.0%
ATGCCAAGATCGGACCCAAA+TGG + chr1_1:59808199-59808218 Msa0032630:CDS 50.0%
AGACCATTTGGGTCCGATCT+TGG - chr1_1:59808205-59808224 None:intergenic 50.0%
TCGGACCCAAATGGTCTCTA+TGG + chr1_1:59808208-59808227 Msa0032630:CDS 50.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 59807961 59808356 59807961 ID=Msa0032630;Name=Msa0032630
chr1_1 mRNA 59807961 59808356 59807961 ID=Msa0032630-mRNA-1;Parent=Msa0032630;Name=Msa0032630-mRNA-1;_AED=0.55;_eAED=0.55;_QI=0|-1|0|1|-1|1|1|0|131
chr1_1 exon 59807961 59808356 59807961 ID=Msa0032630-mRNA-1:exon:18601;Parent=Msa0032630-mRNA-1
chr1_1 CDS 59807961 59808356 59807961 ID=Msa0032630-mRNA-1:cds;Parent=Msa0032630-mRNA-1
Gene Sequence

>Msa0032630

ATGTCGTACGGTGCTGATACTACTAGGTTGAAAAAAGGACCATGGTCATTACATGAGGATGCAATATTAAAAGAATATGTGAGAAATTATGGAGAGGGTAATTGGGATGCGGTAAAAGAGAAAACCGAACTTTTTCGATGTGGTAAAAGTTGTCGTCTAAGATGGCTTAATCACCTACATCCTAATTTAGAAAAGGTTCCAATTACTAGAGAAGAAGAACAGAAAATCGTTGAATTGCATGCCAAGATCGGACCCAAATGGTCTCTATGGTTAAGGAGGACTGTATATCCTATGGTCAGGATTGATAAAAACAAATATATCCTATGGTTAGGAATTGCTTATTTGGCAATCCTCGTCAAATTAATCTTTTTGGAATTGCTTATAATTCTAGCCTAA
Protein sequence

>Msa0032630

MSYGADTTRLKKGPWSLHEDAILKEYVRNYGEGNWDAVKEKTELFRCGKSCRLRWLNHLHPNLEKVPITREEEQKIVELHAKIGPKWSLWLRRTVYPMVRIDKNKYILWLGIAYLAILVKLIFLELLIILA*