AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032640 MtrunA17_Chr1g0192411 62.873 369 71 13 3 318 15 370 5.38e-136 392
Msa0032640 MtrunA17_Chr1g0154031 50.000 132 50 2 3 124 79 204 9.64e-35 130
Msa0032640 MtrunA17_Chr8g0354661 53.982 113 42 1 3 105 40 152 4.38e-33 128
Msa0032640 MtrunA17_Chr3g0099131 53.571 112 42 1 3 104 44 155 1.67e-32 126
Msa0032640 MtrunA17_Chr3g0080861 49.558 113 47 1 3 105 40 152 1.43e-31 124
Msa0032640 MtrunA17_Chr2g0322521 52.174 115 45 1 3 107 32 146 5.53e-30 117
Msa0032640 MtrunA17_Chr5g0440781 39.227 181 87 6 3 171 15 184 1.53e-29 111
Msa0032640 MtrunA17_Chr5g0441141 39.227 181 87 6 3 171 15 184 5.33e-29 112
Msa0032640 MtrunA17_Chr5g0440761 39.227 181 87 6 3 171 15 184 5.41e-29 112
Msa0032640 MtrunA17_Chr3g0099141 60.759 79 31 0 3 81 43 121 6.87e-27 103
Msa0032640 MtrunA17_Chr5g0441131 38.636 176 79 6 3 167 12 169 2.86e-26 102
Msa0032640 MtrunA17_Chr5g0410961 36.313 179 89 5 3 162 15 187 3.00e-26 106
Msa0032640 MtrunA17_Chr6g0453471 41.593 113 55 2 3 104 15 127 9.01e-25 102
Msa0032640 MtrunA17_Chr7g0274581 43.689 103 48 1 3 95 15 117 1.21e-24 99.4
Msa0032640 MtrunA17_Chr4g0042671 36.170 141 78 3 3 131 15 155 2.23e-24 102
Msa0032640 MtrunA17_Chr1g0151941 36.496 137 72 3 3 124 15 151 2.91e-24 99.4
Msa0032640 MtrunA17_Chr1g0209661 43.689 103 48 1 3 95 30 132 5.59e-24 99.8
Msa0032640 MtrunA17_Chr5g0435101 41.228 114 56 2 3 105 14 127 6.46e-24 97.4
Msa0032640 MtrunA17_Chr6g0453751 55.682 88 30 3 3 81 23 110 8.83e-24 94.7
Msa0032640 MtrunA17_Chr2g0330041 34.731 167 88 4 3 157 15 172 9.01e-24 100
Msa0032640 MtrunA17_Chr1g0152011 47.059 102 43 2 3 93 15 116 9.85e-24 99.8
Msa0032640 MtrunA17_Chr2g0281071 41.964 112 54 2 3 103 16 127 1.20e-23 99.4
Msa0032640 MtrunA17_Chr1g0167661 29.767 215 132 4 3 201 15 226 1.20e-23 97.8
Msa0032640 MtrunA17_Chr1g0187761 53.165 79 37 0 3 81 15 93 1.22e-23 97.8
Msa0032640 MtrunA17_Chr1g0203411 40.566 106 53 1 3 98 15 120 1.31e-23 98.6
Msa0032640 MtrunA17_Chr8g0385321 41.129 124 57 2 3 116 15 132 1.32e-23 99.0
Msa0032640 MtrunA17_Chr7g0228231 44.660 103 47 1 3 95 17 119 1.50e-23 96.3
Msa0032640 MtrunA17_Chr7g0217741 40.708 113 56 2 3 104 15 127 1.73e-23 98.6
Msa0032640 MtrunA17_Chr4g0048511 29.665 209 103 5 3 176 16 215 1.98e-23 99.0
Msa0032640 MtrunA17_Chr1g0193801 43.902 123 54 3 3 110 15 137 2.42e-23 99.4
Msa0032640 MtrunA17_Chr6g0450101 45.631 103 46 1 3 95 17 119 2.99e-23 95.5
Msa0032640 MtrunA17_Chr5g0425591 52.439 82 38 1 3 83 12 93 3.69e-23 91.7
Msa0032640 MtrunA17_Chr8g0346561 42.718 103 49 1 3 95 15 117 4.10e-23 97.1
Msa0032640 MtrunA17_Chr1g0167691 42.574 101 48 1 3 93 15 115 4.16e-23 96.3
Msa0032640 MtrunA17_Chr6g0452271 41.270 126 63 2 3 117 15 140 5.12e-23 97.4
Msa0032640 MtrunA17_Chr5g0400821 46.078 102 44 2 3 93 15 116 5.49e-23 97.1
Msa0032640 MtrunA17_Chr3g0115821 38.400 125 66 2 3 116 15 139 5.84e-23 97.4
Msa0032640 MtrunA17_Chr4g0054391 48.958 96 38 2 3 87 15 110 8.11e-23 96.3
Msa0032640 MtrunA17_Chr7g0261281 42.105 114 52 2 3 106 15 124 9.04e-23 95.9
Msa0032640 MtrunA17_Chr5g0417821 39.823 113 57 2 3 104 10 122 9.10e-23 95.9
Msa0032640 MtrunA17_Chr4g0037141 42.574 101 48 1 3 93 15 115 1.39e-22 95.5
Msa0032640 MtrunA17_Chr3g0131121 38.806 134 70 3 3 125 15 147 1.77e-22 95.5
Msa0032640 MtrunA17_Chr4g0044421 36.424 151 80 4 3 142 15 160 2.24e-22 92.8
Msa0032640 MtrunA17_Chr3g0121241 42.574 101 48 1 3 93 45 145 2.63e-22 95.1
Msa0032640 MtrunA17_Chr3g0135311 44.118 102 46 2 3 93 15 116 3.13e-22 95.5
Msa0032640 MtrunA17_Chr7g0275911 41.748 103 50 1 3 95 15 117 3.23e-22 94.0
Msa0032640 MtrunA17_Chr4g0022911 45.098 102 46 1 3 94 16 117 3.30e-22 94.4
Msa0032640 MtrunA17_Chr4g0022901 45.098 102 46 1 3 94 16 117 3.52e-22 94.0
Msa0032640 MtrunA17_Chr4g0022931 43.689 103 48 1 3 95 16 118 3.63e-22 94.0
Msa0032640 MtrunA17_Chr1g0193371 44.660 103 47 1 3 95 15 117 4.14e-22 95.5
Msa0032640 MtrunA17_Chr4g0028311 40.351 114 56 3 3 104 15 128 6.02e-22 94.4
Msa0032640 MtrunA17_Chr7g0264641 44.118 102 46 2 3 93 15 116 6.57e-22 93.2
Msa0032640 MtrunA17_Chr7g0270891 43.689 103 48 1 3 95 15 117 6.89e-22 94.7
Msa0032640 MtrunA17_Chr1g0211161 40.984 122 61 2 3 113 16 137 6.97e-22 92.4
Msa0032640 MtrunA17_Chr7g0228891 42.478 113 54 2 3 104 15 127 7.80e-22 93.2
Msa0032640 MtrunA17_Chr7g0271241 50.617 81 40 0 3 83 15 95 9.66e-22 94.7
Msa0032640 MtrunA17_Chr1g0168661 44.660 103 47 1 3 95 24 126 1.22e-21 92.4
Msa0032640 MtrunA17_Chr3g0103281 34.146 164 84 3 3 142 15 178 1.22e-21 93.6
Msa0032640 MtrunA17_Chr1g0186061 44.660 103 47 1 3 95 23 125 1.35e-21 92.0
Msa0032640 MtrunA17_Chr4g0039971 41.964 112 54 2 3 103 16 127 1.50e-21 93.6
Msa0032640 MtrunA17_Chr2g0323411 43.564 101 47 1 3 93 15 115 1.62e-21 93.2
Msa0032640 MtrunA17_Chr1g0194291 41.748 103 50 1 3 95 24 126 1.66e-21 92.0
Msa0032640 MtrunA17_Chr4g0032401 43.333 120 56 3 3 112 20 137 1.79e-21 93.2
Msa0032640 MtrunA17_Chr8g0342541 44.554 101 46 1 3 93 15 115 2.08e-21 93.2
Msa0032640 MtrunA17_Chr3g0117091 43.564 101 47 1 3 93 15 115 2.47e-21 93.2
Msa0032640 MtrunA17_Chr2g0327351 45.833 96 41 2 3 87 15 110 3.02e-21 92.4
Msa0032640 MtrunA17_Chr4g0022891 50.617 81 40 0 3 83 15 95 3.08e-21 90.9
Msa0032640 MtrunA17_Chr4g0022881 43.689 103 48 1 3 95 15 117 3.54e-21 90.5
Msa0032640 MtrunA17_Chr4g0057031 40.708 113 56 2 3 104 15 127 3.60e-21 91.3
Msa0032640 MtrunA17_Chr7g0217221 41.748 103 50 1 3 95 15 117 4.19e-21 91.3
Msa0032640 MtrunA17_Chr1g0194301 39.806 103 52 1 3 95 36 138 6.17e-21 90.9
Msa0032640 MtrunA17_Chr8g0349261 39.474 114 57 3 3 104 16 129 7.06e-21 90.9
Msa0032640 MtrunA17_Chr4g0042611 47.297 74 39 0 3 76 15 88 7.10e-21 85.5
Msa0032640 MtrunA17_Chr8g0342521 44.554 101 46 1 3 93 15 115 7.41e-21 91.7
Msa0032640 MtrunA17_Chr1g0203441 41.071 112 56 1 3 104 16 127 8.18e-21 90.5
Msa0032640 MtrunA17_Chr2g0328771 42.718 103 49 1 3 95 23 125 9.32e-21 90.9
Msa0032640 MtrunA17_Chr3g0110351 38.983 118 61 2 3 109 15 132 1.22e-20 90.5
Msa0032640 MtrunA17_Chr4g0060721 41.584 101 49 1 3 93 16 116 1.25e-20 90.9
Msa0032640 MtrunA17_Chr5g0434571 37.692 130 70 2 3 121 51 180 1.47e-20 90.9
Msa0032640 MtrunA17_Chr2g0323351 50.000 78 39 0 3 80 15 92 1.67e-20 89.0
Msa0032640 MtrunA17_Chr4g0068061 41.584 101 49 1 3 93 15 115 1.86e-20 90.5
Msa0032640 MtrunA17_Chr4g0058631 41.584 101 49 1 3 93 15 115 2.37e-20 90.5
Msa0032640 MtrunA17_Chr6g0453211 43.158 95 44 1 3 87 15 109 3.10e-20 89.4
Msa0032640 MtrunA17_Chr2g0311221 53.947 76 35 0 3 78 17 92 3.19e-20 89.7
Msa0032640 MtrunA17_Chr3g0092401 33.108 148 81 2 3 140 16 155 3.45e-20 89.4
Msa0032640 MtrunA17_Chr5g0395281 37.692 130 67 3 3 121 15 141 3.89e-20 89.0
Msa0032640 MtrunA17_Chr4g0070641 40.777 103 51 1 3 95 15 117 4.27e-20 85.9
Msa0032640 MtrunA17_Chr4g0070611 40.777 103 51 1 3 95 15 117 5.00e-20 88.6
Msa0032640 MtrunA17_Chr8g0387421 39.806 103 52 1 3 95 15 117 6.52e-20 88.6
Msa0032640 MtrunA17_Chr8g0342511 52.778 72 34 0 3 74 15 86 6.53e-20 83.2
Msa0032640 MtrunA17_Chr8g0343831 41.748 103 50 1 3 95 11 113 7.23e-20 87.4
Msa0032640 MtrunA17_Chr3g0088461 41.748 103 50 1 3 95 25 127 7.42e-20 89.0
Msa0032640 MtrunA17_Chr1g0180391 40.708 113 57 1 3 105 22 134 8.69e-20 86.7
Msa0032640 MtrunA17_Chr2g0309911 40.351 114 57 2 3 105 14 127 8.94e-20 88.2
Msa0032640 MtrunA17_Chr8g0342531 39.048 105 63 1 3 106 15 119 9.24e-20 84.7
Msa0032640 MtrunA17_Chr7g0254411 41.584 101 49 1 3 93 15 115 1.01e-19 88.2
Msa0032640 MtrunA17_Chr4g0072751 45.833 96 41 2 3 87 15 110 1.23e-19 88.2
Msa0032640 MtrunA17_Chr8g0360111 46.835 79 42 0 3 81 28 106 1.37e-19 86.7
Msa0032640 MtrunA17_Chr5g0397231 43.158 95 44 1 3 87 15 109 2.48e-19 87.4
Msa0032640 MtrunA17_Chr7g0228991 39.216 102 52 1 3 94 32 133 3.47e-19 85.9
Msa0032640 MtrunA17_Chr7g0240821 43.000 100 47 1 4 93 5 104 5.32e-19 84.3
Msa0032640 MtrunA17_Chr8g0342481 43.137 102 47 2 3 93 15 116 6.21e-19 86.7
Msa0032640 MtrunA17_Chr5g0434841 41.176 102 50 1 3 94 23 124 6.59e-19 85.9
Msa0032640 MtrunA17_Chr1g0194951 48.101 79 41 0 3 81 15 93 7.85e-19 86.3
Msa0032640 MtrunA17_Chr5g0434931 38.614 101 52 1 3 93 38 138 8.67e-19 84.7
Msa0032640 MtrunA17_Chr2g0323321 46.154 78 42 0 3 80 14 91 9.51e-19 80.5
Msa0032640 MtrunA17_Chr6g0470971 42.574 101 48 1 3 93 17 117 9.61e-19 84.7
Msa0032640 MtrunA17_Chr4g0055981 43.158 95 44 1 3 87 58 152 9.66e-19 83.6
Msa0032640 MtrunA17_Chr6g0487491 36.429 140 62 4 3 123 15 146 1.20e-18 84.0
Msa0032640 MtrunA17_Chr2g0327821 38.835 103 53 1 3 95 9 111 1.55e-18 83.2
Msa0032640 MtrunA17_Chr4g0013361 43.519 108 49 3 3 99 13 119 1.57e-18 84.3
Msa0032640 MtrunA17_Chr5g0395221 47.297 74 39 0 3 76 15 88 2.68e-18 78.6
Msa0032640 MtrunA17_Chr5g0434911 38.614 101 52 1 3 93 24 124 3.49e-18 83.2
Msa0032640 MtrunA17_Chr8g0342461 50.000 76 37 1 3 77 15 90 3.68e-18 79.7
Msa0032640 MtrunA17_Chr4g0030881 37.963 108 50 2 3 93 10 117 3.81e-18 82.8
Msa0032640 MtrunA17_Chr8g0334881 41.905 105 50 2 3 96 13 117 9.70e-18 82.4
Msa0032640 MtrunA17_Chr8g0342471 48.684 76 38 1 3 77 15 90 1.39e-17 78.2
Msa0032640 MtrunA17_Chr5g0434831 38.235 102 53 1 3 94 10 111 1.86e-17 79.3
Msa0032640 MtrunA17_Chr7g0220341 37.500 104 53 2 3 94 28 131 2.56e-17 80.5
Msa0032640 MtrunA17_Chr2g0294811 45.570 79 43 0 3 81 15 93 2.82e-17 76.6
Msa0032640 MtrunA17_Chr2g0293911 41.748 103 50 1 3 95 27 129 3.11e-17 81.3
Msa0032640 MtrunA17_Chr4g0068921 41.748 103 50 1 3 95 27 129 4.24e-17 78.2
Msa0032640 MtrunA17_Chr4g0008551 37.500 152 74 5 3 140 39 183 9.78e-17 80.1
Msa0032640 MtrunA17_Chr7g0247131 43.902 82 35 2 34 104 12 93 4.75e-16 77.0
Msa0032640 MtrunA17_Chr7g0269831 45.263 95 42 1 3 87 15 109 4.88e-16 77.8
Msa0032640 MtrunA17_Chr6g0460661 43.243 74 41 1 5 78 19 91 2.40e-15 72.8
Msa0032640 MtrunA17_Chr1g0193901 53.659 82 37 1 5 85 17 98 2.45e-15 71.2
Msa0032640 MtrunA17_Chr1g0193891 53.659 82 37 1 5 85 17 98 2.45e-15 71.2
Msa0032640 MtrunA17_Chr1g0193871 53.659 82 37 1 5 85 17 98 2.45e-15 71.2
Msa0032640 MtrunA17_Chr1g0193881 53.659 82 37 1 5 85 17 98 2.45e-15 71.2
Msa0032640 MtrunA17_Chr6g0454921 39.583 96 47 2 3 88 16 110 3.73e-15 73.2
Msa0032640 MtrunA17_Chr5g0429661 40.594 101 49 2 3 93 123 222 9.73e-15 74.3
Msa0032640 MtrunA17_Chr6g0480581 41.250 80 46 1 3 82 5 83 1.73e-14 72.0
Msa0032640 MtrunA17_Chr5g0401731 42.500 80 45 1 3 82 16 94 3.43e-14 72.4
Msa0032640 MtrunA17_Chr3g0125801 45.000 80 43 1 3 82 17 95 5.57e-14 71.2
Msa0032640 MtrunA17_Chr3g0133601 34.286 105 58 2 3 97 38 141 5.89e-14 70.1
Msa0032640 MtrunA17_Chr4g0053431 41.250 80 46 1 3 82 6 84 2.59e-13 68.9
Msa0032640 MtrunA17_Chr5g0417621 40.000 80 47 1 3 82 135 213 3.12e-13 70.1
Msa0032640 MtrunA17_Chr7g0238651 48.000 75 37 1 5 77 10 84 5.82e-13 68.9
Msa0032640 MtrunA17_Chr7g0238631 37.624 101 52 2 3 93 114 213 6.30e-13 69.3
Msa0032640 MtrunA17_Chr7g0238631 48.193 83 37 3 3 82 62 141 3.95e-12 67.0
Msa0032640 MtrunA17_Chr3g0139671 30.994 171 96 6 3 159 86 248 8.42e-13 69.3
Msa0032640 MtrunA17_Chr4g0042501 38.750 80 48 1 3 82 106 184 1.54e-12 67.8
Msa0032640 MtrunA17_Chr1g0157731 35.644 101 54 2 3 93 92 191 2.86e-12 67.8
Msa0032640 MtrunA17_Chr4g0058991 35.644 101 54 2 3 93 210 309 8.34e-12 65.9
Msa0032640 MtrunA17_Chr6g0460671 37.500 80 49 1 3 82 100 178 3.36e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032640 AT5G06100.1 52.991 117 45 1 3 109 35 151 2.27e-35 133
Msa0032640 AT5G06100.5 53.913 115 43 1 3 107 35 149 6.04e-35 133
Msa0032640 AT5G06100.2 53.913 115 43 1 3 107 35 149 6.04e-35 133
Msa0032640 AT5G06100.3 53.913 115 43 1 3 107 35 149 6.04e-35 133
Msa0032640 AT5G06100.4 53.913 115 43 1 3 107 35 149 6.04e-35 133
Msa0032640 AT2G32460.1 51.282 117 47 1 3 109 21 137 1.07e-34 132
Msa0032640 AT2G32460.2 51.282 117 47 1 3 109 9 125 1.26e-34 132
Msa0032640 AT4G26930.1 50.862 116 47 1 3 108 22 137 1.57e-34 130
Msa0032640 AT3G11440.2 53.097 113 43 1 3 105 44 156 8.56e-34 129
Msa0032640 AT3G11440.3 53.097 113 43 1 3 105 44 156 2.33e-33 129
Msa0032640 AT3G11440.4 53.097 113 43 1 3 105 44 156 2.33e-33 129
Msa0032640 AT3G11440.1 53.097 113 43 1 3 105 44 156 2.33e-33 129
Msa0032640 AT2G26960.1 46.923 130 54 2 3 117 23 152 1.97e-32 125
Msa0032640 AT5G55020.1 52.294 109 42 1 3 101 29 137 7.09e-32 125
Msa0032640 AT2G26950.1 33.929 224 122 7 5 215 21 231 4.05e-26 107
Msa0032640 AT3G01530.1 39.683 126 65 2 3 117 28 153 2.49e-25 101
Msa0032640 AT3G01140.2 37.589 141 76 3 3 132 15 154 1.51e-24 102
Msa0032640 AT3G01140.1 37.589 141 76 3 3 132 58 197 1.91e-24 102
Msa0032640 AT4G01680.3 40.625 128 65 2 3 119 15 142 2.43e-24 99.8
Msa0032640 AT3G13540.1 36.842 152 77 5 3 142 26 170 2.49e-24 99.8
Msa0032640 AT5G15310.4 36.620 142 76 4 3 132 15 154 3.82e-24 99.4
Msa0032640 AT5G15310.2 36.620 142 76 4 3 132 15 154 5.19e-24 100
Msa0032640 AT5G15310.1 36.620 142 76 4 3 132 15 154 5.78e-24 100
Msa0032640 AT4G01680.1 43.860 114 53 2 3 105 15 128 8.59e-24 100
Msa0032640 AT4G38620.1 38.971 136 62 3 3 123 15 144 1.79e-23 98.2
Msa0032640 AT5G14750.1 44.340 106 47 2 3 98 19 122 2.20e-23 95.9
Msa0032640 AT4G21440.1 41.964 112 54 2 3 103 15 126 2.24e-23 99.4
Msa0032640 AT1G34670.1 39.200 125 65 2 3 116 15 139 2.28e-23 99.4
Msa0032640 AT3G27810.1 44.660 103 47 1 3 95 23 125 2.41e-23 96.7
Msa0032640 AT1G48000.1 42.308 104 50 1 3 96 35 138 2.46e-23 97.1
Msa0032640 AT5G23000.1 47.059 102 43 2 3 93 15 116 2.80e-23 98.6
Msa0032640 AT5G40330.1 42.857 105 50 1 3 97 15 119 2.87e-23 96.3
Msa0032640 AT5G40350.1 45.000 100 45 1 3 92 20 119 3.92e-23 95.5
Msa0032640 AT3G61250.1 35.333 150 78 4 3 133 15 164 5.14e-23 97.4
Msa0032640 AT4G05100.1 42.857 112 53 2 3 103 16 127 6.10e-23 97.4
Msa0032640 AT5G16770.4 41.071 112 55 2 3 103 15 126 7.56e-23 97.4
Msa0032640 AT5G16770.3 41.071 112 55 2 3 103 15 126 7.56e-23 97.4
Msa0032640 AT1G74080.1 32.836 201 112 7 3 185 15 210 8.12e-23 97.4
Msa0032640 AT4G28110.1 44.554 101 46 1 3 93 15 115 1.30e-22 95.9
Msa0032640 AT4G17785.2 39.683 126 65 2 3 117 16 141 1.32e-22 97.1
Msa0032640 AT5G16770.1 41.071 112 55 2 3 103 15 126 1.39e-22 96.7
Msa0032640 AT5G16770.2 41.071 112 55 2 3 103 15 126 1.39e-22 96.7
Msa0032640 AT5G57620.1 45.098 102 45 2 3 93 15 116 1.46e-22 96.7
Msa0032640 AT1G25340.1 43.689 103 48 1 3 95 21 123 1.58e-22 95.5
Msa0032640 AT3G02940.2 41.071 112 55 2 3 103 15 126 1.63e-22 96.3
Msa0032640 AT4G17785.1 39.683 126 65 2 3 117 16 141 1.67e-22 97.1
Msa0032640 AT5G26660.1 44.660 103 47 1 3 95 15 117 2.02e-22 96.7
Msa0032640 AT5G60890.1 29.592 196 109 5 3 182 15 197 2.29e-22 95.5
Msa0032640 AT3G02940.1 41.071 112 55 2 3 103 15 126 2.92e-22 95.5
Msa0032640 AT3G02940.3 41.071 112 55 2 3 103 15 126 2.92e-22 95.5
Msa0032640 AT3G49690.1 46.078 102 44 2 3 93 15 116 3.29e-22 95.1
Msa0032640 AT4G37780.1 43.137 102 47 2 3 93 15 116 3.44e-22 95.1
Msa0032640 AT5G61420.2 43.564 101 47 1 3 93 15 115 3.49e-22 96.3
Msa0032640 AT2G16720.1 36.170 141 78 2 3 131 15 155 3.69e-22 94.4
Msa0032640 AT1G18570.1 39.098 133 68 3 3 124 16 146 3.76e-22 95.9
Msa0032640 AT5G65230.1 40.708 113 56 2 3 104 15 127 4.18e-22 95.1
Msa0032640 AT5G10280.1 36.552 145 78 3 3 133 15 159 4.38e-22 95.5
Msa0032640 AT1G68320.1 43.689 103 48 1 3 95 22 124 4.94e-22 94.4
Msa0032640 AT1G57560.2 42.188 128 62 3 3 118 15 142 5.33e-22 94.0
Msa0032640 AT3G13890.2 43.564 101 47 1 3 93 15 115 5.70e-22 95.5
Msa0032640 AT5G56110.1 37.778 135 71 3 3 126 15 147 5.95e-22 94.7
Msa0032640 AT5G07700.1 43.564 101 47 1 3 93 15 115 6.02e-22 95.1
Msa0032640 AT5G07700.2 43.564 101 47 1 3 93 15 115 6.02e-22 95.1
Msa0032640 AT1G35515.1 42.574 101 48 1 3 93 15 115 6.13e-22 92.4
Msa0032640 AT3G30210.1 45.631 103 46 1 3 95 30 132 7.26e-22 93.6
Msa0032640 AT1G16490.1 33.333 171 100 3 3 163 17 183 9.30e-22 93.2
Msa0032640 AT5G07690.1 43.000 100 47 1 3 92 15 114 9.35e-22 94.4
Msa0032640 AT1G09540.1 45.631 103 46 1 3 95 15 117 9.98e-22 94.7
Msa0032640 AT4G09460.1 40.594 101 50 1 3 93 15 115 1.05e-21 92.4
Msa0032640 AT1G74430.1 40.708 113 56 2 3 104 15 127 1.23e-21 92.8
Msa0032640 AT4G22680.1 39.310 145 71 5 3 132 15 157 1.50e-21 92.4
Msa0032640 AT5G65790.1 45.098 102 45 2 3 93 15 116 1.53e-21 94.4
Msa0032640 AT1G18710.1 38.938 113 58 2 3 104 15 127 1.67e-21 92.4
Msa0032640 AT1G57560.1 43.363 113 53 2 3 104 15 127 2.06e-21 93.2
Msa0032640 AT1G79180.1 43.564 101 47 1 3 93 17 117 2.09e-21 92.8
Msa0032640 AT3G24310.1 45.631 103 46 1 3 95 21 123 2.09e-21 92.4
Msa0032640 AT3G27920.1 42.574 101 48 1 3 93 17 117 2.48e-21 91.3
Msa0032640 AT3G23250.1 41.584 101 49 1 3 93 15 115 3.02e-21 92.0
Msa0032640 AT4G01680.2 39.683 126 53 3 3 105 15 140 3.17e-21 93.2
Msa0032640 AT2G36890.1 45.098 102 45 2 3 93 15 116 3.37e-21 92.4
Msa0032640 AT3G12820.1 45.545 101 45 1 3 93 17 117 4.34e-21 90.9
Msa0032640 AT4G13480.1 45.631 103 46 1 3 95 9 111 5.50e-21 90.9
Msa0032640 AT2G36890.2 42.105 114 53 3 3 103 56 169 5.69e-21 92.4
Msa0032640 AT2G31180.1 33.766 154 85 3 3 142 15 165 6.76e-21 90.5
Msa0032640 AT5G54230.1 39.286 112 57 2 3 103 15 126 7.69e-21 91.7
Msa0032640 AT3G28910.1 42.574 101 48 1 3 93 15 115 8.18e-21 91.7
Msa0032640 AT1G22640.1 39.370 127 66 2 3 118 15 141 8.38e-21 90.5
Msa0032640 AT4G34990.1 41.584 101 49 1 3 93 15 115 1.00e-20 90.5
Msa0032640 AT1G74650.1 41.584 101 49 1 3 93 15 115 1.14e-20 91.3
Msa0032640 AT5G16600.1 38.017 121 64 2 3 112 15 135 1.22e-20 91.3
Msa0032640 AT5G14340.1 40.708 113 56 2 3 104 27 139 1.54e-20 90.1
Msa0032640 AT5G49330.1 46.316 95 41 1 3 87 15 109 2.40e-20 90.5
Msa0032640 AT1G08810.1 41.584 101 49 1 3 93 15 115 2.75e-20 89.4
Msa0032640 AT5G62470.2 41.748 103 50 1 3 95 15 117 2.76e-20 90.5
Msa0032640 AT1G06180.1 42.574 101 48 1 3 93 15 115 5.14e-20 87.8
Msa0032640 AT3G47600.1 40.777 103 51 1 3 95 15 117 5.40e-20 89.4
Msa0032640 AT3G53200.1 44.554 101 46 1 3 93 12 112 5.88e-20 87.8
Msa0032640 AT1G25340.2 41.748 103 45 2 3 95 21 118 8.72e-20 87.8
Msa0032640 AT5G12870.1 42.718 103 49 1 3 95 21 123 1.04e-19 87.8
Msa0032640 AT3G12720.1 41.584 101 49 1 3 93 25 125 1.10e-19 88.2
Msa0032640 AT1G25340.3 41.748 103 45 2 3 95 21 118 1.55e-19 87.8
Msa0032640 AT3G08500.1 41.748 103 50 1 3 95 33 135 1.75e-19 88.2
Msa0032640 AT3G13890.1 39.091 110 48 2 3 93 15 124 1.99e-19 88.2
Msa0032640 AT3G48920.1 39.837 123 60 2 3 115 21 139 2.50e-19 86.3
Msa0032640 AT1G56160.1 39.604 101 51 1 3 93 17 117 2.77e-19 87.0
Msa0032640 AT1G63910.1 39.806 103 52 1 3 95 15 117 2.87e-19 87.8
Msa0032640 AT2G47190.1 39.806 103 52 1 3 95 23 125 4.12e-19 85.9
Msa0032640 AT5G62470.1 41.748 103 49 2 3 95 15 116 4.14e-19 87.0
Msa0032640 AT5G35550.1 41.584 101 49 1 3 93 17 117 4.20e-19 85.5
Msa0032640 AT2G47460.1 36.364 132 72 2 3 122 15 146 4.34e-19 87.4
Msa0032640 AT3G62610.1 43.158 95 44 1 3 87 15 109 8.40e-19 86.3
Msa0032640 AT1G66230.1 38.053 113 59 2 3 104 15 127 9.63e-19 85.1
Msa0032640 AT3G28470.1 46.914 81 43 0 3 83 15 95 1.15e-18 85.5
Msa0032640 AT5G59780.3 40.777 103 51 1 3 95 11 113 1.19e-18 84.0
Msa0032640 AT3G46130.1 39.806 103 52 1 3 95 12 114 2.13e-18 83.6
Msa0032640 AT1G66370.1 40.594 101 50 1 3 93 11 111 2.47e-18 83.2
Msa0032640 AT5G52600.1 28.500 200 115 4 3 188 15 200 3.07e-18 82.0
Msa0032640 AT5G49620.1 43.689 103 48 1 3 95 29 131 3.45e-18 84.0
Msa0032640 AT4G25560.1 41.584 101 49 1 3 93 13 113 7.97e-18 82.4
Msa0032640 AT4G12350.1 39.604 101 51 1 3 93 15 115 1.08e-17 82.4
Msa0032640 AT3G06490.1 43.689 103 48 1 3 95 22 124 2.02e-17 82.0
Msa0032640 AT3G60460.1 39.048 105 53 2 3 96 14 118 2.71e-17 81.3
Msa0032640 AT5G62320.1 37.815 119 56 3 3 103 16 134 2.81e-16 77.4
Msa0032640 AT3G50060.1 38.679 106 54 2 3 98 7 111 3.81e-16 78.2
Msa0032640 AT1G66380.1 39.604 101 51 1 3 93 11 111 4.92e-16 74.3
Msa0032640 AT1G17950.1 38.889 108 51 3 3 96 6 112 5.03e-16 77.0
Msa0032640 AT1G66390.1 39.604 101 51 1 3 93 11 111 5.08e-16 77.0
Msa0032640 AT5G67300.1 45.000 80 43 1 3 82 7 85 8.43e-16 77.0
Msa0032640 AT1G56650.1 39.604 101 51 1 3 93 11 111 9.95e-16 75.9
Msa0032640 AT5G52260.1 34.965 143 79 2 3 131 15 157 1.29e-15 75.9
Msa0032640 AT1G79180.2 32.836 134 47 2 3 93 17 150 2.68e-15 75.9
Msa0032640 AT5G49620.2 38.462 117 48 2 3 95 29 145 5.24e-15 75.1
Msa0032640 AT1G66380.2 50.000 60 30 0 3 62 11 70 9.61e-15 69.7
Msa0032640 AT5G58850.1 39.604 101 50 2 3 93 106 205 2.11e-14 73.9
Msa0032640 AT5G11050.1 38.614 101 51 2 3 93 106 205 2.69e-14 73.6
Msa0032640 AT5G17800.1 35.922 103 55 2 3 95 94 195 3.59e-14 72.8
Msa0032640 AT1G73410.1 37.864 103 53 2 3 95 7 108 7.34e-14 70.5
Msa0032640 AT1G73410.2 37.864 103 53 2 3 95 7 108 1.40e-13 68.9
Msa0032640 AT3G55730.1 37.624 101 52 2 3 93 57 156 1.42e-13 71.2
Msa0032640 AT3G27810.2 47.222 72 28 1 34 95 5 76 1.45e-13 68.6
Msa0032640 AT3G09230.1 38.614 101 51 2 3 93 56 155 1.54e-13 71.2
Msa0032640 AT4G33450.1 41.250 80 46 1 3 82 20 98 2.99e-13 68.9
Msa0032640 AT2G39880.1 35.897 117 60 3 3 105 51 166 6.26e-13 69.3
Msa0032640 AT3G09370.2 34.906 106 58 2 3 98 136 240 8.20e-13 69.3
Msa0032640 AT5G40350.2 46.377 69 27 1 34 92 6 74 8.62e-13 66.2
Msa0032640 AT3G09370.1 34.906 106 58 2 3 98 131 235 8.68e-13 69.3
Msa0032640 AT3G09370.3 34.906 106 58 2 3 98 144 248 1.03e-12 68.9
Msa0032640 AT1G69560.1 38.750 80 48 1 3 82 108 186 1.18e-12 68.2
Msa0032640 AT5G14750.3 33.636 110 59 3 35 134 17 122 1.19e-12 65.9
Msa0032640 AT5G26660.2 39.744 78 37 1 28 95 9 86 1.33e-12 67.8
Msa0032640 AT4G37260.1 41.026 78 45 1 3 80 14 90 1.40e-12 67.8
Msa0032640 AT2G23290.1 41.250 80 46 1 3 82 14 92 1.42e-12 67.8
Msa0032640 AT3G29020.1 29.167 120 74 2 3 112 66 184 1.45e-12 66.6
Msa0032640 AT3G29020.2 29.167 120 74 2 3 112 68 186 1.51e-12 67.8
Msa0032640 AT1G69560.2 38.750 80 48 1 3 82 124 202 1.52e-12 68.2
Msa0032640 AT1G26780.1 40.000 80 47 1 3 82 99 177 1.70e-12 67.4
Msa0032640 AT1G26780.2 40.000 80 47 1 3 82 99 177 2.37e-12 67.4
Msa0032640 AT3G53200.2 45.714 70 28 1 34 93 10 79 2.91e-12 65.5
Msa0032640 AT4G32730.5 35.644 101 54 2 3 93 88 187 4.37e-12 67.4
Msa0032640 AT4G32730.4 35.644 101 54 2 3 93 88 187 4.37e-12 67.4
Msa0032640 AT4G32730.3 35.644 101 54 2 3 93 88 187 4.37e-12 67.4
Msa0032640 AT4G32730.2 35.644 101 54 2 3 93 88 187 4.37e-12 67.4
Msa0032640 AT4G32730.1 35.644 101 54 2 3 93 88 187 4.72e-12 67.4
Msa0032640 AT5G02320.1 34.545 110 61 2 3 102 128 236 7.36e-12 66.6
Msa0032640 AT5G02320.1 46.988 83 38 3 3 82 76 155 5.35e-11 63.9
Msa0032640 AT5G02320.2 34.545 110 61 2 3 102 128 236 7.36e-12 66.6
Msa0032640 AT5G02320.2 46.988 83 38 3 3 82 76 155 5.35e-11 63.9
Msa0032640 AT5G02320.3 34.545 110 61 2 3 102 68 176 7.53e-12 66.2
Msa0032640 AT5G02320.3 46.988 83 38 3 3 82 16 95 5.49e-11 63.9
Msa0032640 AT3G12820.2 46.377 69 27 1 35 93 1 69 9.09e-12 63.5
Msa0032640 AT3G46130.3 40.260 77 36 1 29 95 6 82 1.48e-11 63.5
Msa0032640 AT5G39700.1 43.421 76 42 1 3 78 57 131 1.70e-11 62.8
Msa0032640 AT2G37630.1 44.444 81 43 1 5 83 7 87 2.15e-11 64.7
Msa0032640 AT5G59780.2 41.667 72 32 1 34 95 21 92 3.25e-11 62.4
Msa0032640 AT3G46130.4 41.667 72 32 1 34 95 21 92 3.75e-11 62.8
Msa0032640 AT5G11510.2 37.500 80 49 1 3 82 82 160 6.73e-11 63.9
Msa0032640 AT5G11510.5 37.500 80 49 1 3 82 82 160 6.96e-11 63.9
Msa0032640 AT5G11510.3 37.500 80 49 1 3 82 82 160 7.18e-11 63.9
Msa0032640 AT5G11510.1 37.500 80 49 1 3 82 82 160 7.18e-11 63.9
Msa0032640 AT5G11510.4 37.500 80 49 1 3 82 82 160 7.18e-11 63.9
Msa0032640 AT5G40360.1 35.000 100 54 2 3 92 159 257 9.92e-11 62.8

Find 47 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCTTCTTCTTTAGTAAT+TGG 0.202533 1_1:-59813909 None:intergenic
ATCTCATTTCCTCTTCTTGC+AGG 0.265231 1_1:-59816211 None:intergenic
ATAATGAGATAAAGAACTTC+TGG 0.302026 1_1:+59815161 Msa0032640:intron
GTTTCTTTGTTCTTATATTA+TGG 0.303720 1_1:-59816243 None:intergenic
GTCAATATGGAGAAGGCAAC+TGG 0.317251 1_1:+59813793 Msa0032640:CDS
TTGAACCATTAGAGACCATT+TGG 0.355616 1_1:-59813964 None:intergenic
TCCGTGGCTTTGGTCCTAAA+AGG 0.369266 1_1:-59815580 None:intergenic
AGAGTATACGTAAGTCAATA+TGG 0.375867 1_1:+59813780 Msa0032640:CDS
AAGATCTGATTCCGTGGCTT+TGG 0.389101 1_1:-59815590 None:intergenic
AGACCATTTGGGTCCGATCT+TGG 0.399025 1_1:-59813952 None:intergenic
TTAAAAGTTGTCGTTTAAGA+TGG 0.437337 1_1:+59813853 Msa0032640:CDS
ACAAGGAAACGCACAAAACT+TGG 0.439340 1_1:+59815193 Msa0032640:CDS
TGAACCATTAGAGACCATTT+GGG 0.447530 1_1:-59813963 None:intergenic
CGGACCCAAATGGTCTCTAA+TGG 0.449767 1_1:+59813959 Msa0032640:CDS
AATGGAGAAACTTGTCTGAT+TGG 0.452375 1_1:+59816295 Msa0032640:CDS
GTGCTATAAAATTGTTGAAG+AGG 0.454116 1_1:+59815639 Msa0032640:CDS
TGTGAGACATCAGCTTGCTC+CGG 0.459162 1_1:-59815280 None:intergenic
ACTTCCACTTCGATCACCTA+TGG 0.464348 1_1:+59816501 Msa0032640:CDS
TCAGATCTTCCACAATTTCA+AGG 0.465760 1_1:+59815604 Msa0032640:CDS
ACTCAGACTACTTTCTCCAT+TGG 0.498643 1_1:-59815245 None:intergenic
CTTGCTTTAATGATCTCCAT+AGG 0.506843 1_1:-59816517 None:intergenic
GTGAGACATCAGCTTGCTCC+GGG 0.507053 1_1:-59815279 None:intergenic
ATGCCAAGATCGGACCCAAA+TGG 0.529660 1_1:+59813949 Msa0032640:CDS
AATCATGAATTGAATGCCAA+TGG 0.537217 1_1:+59815229 Msa0032640:CDS
TGTTAGTTGCCTGCAAGAAG+AGG 0.541435 1_1:+59816202 Msa0032640:intron
GGTGATCGAAGTGGAAGTAA+AGG 0.543153 1_1:-59816496 None:intergenic
TCATCTTCCTCAAGTGACCA+TGG 0.543429 1_1:-59813750 None:intergenic
TCAGACAAATCCGACATACA+TGG 0.547147 1_1:+59816352 Msa0032640:CDS
GAAGTTCACTCCATGTATGT+CGG 0.550634 1_1:-59816362 None:intergenic
GAGTTGCACCCTTGAAATTG+TGG 0.560638 1_1:-59815613 None:intergenic
TTGAGACATCAGCTTGATGT+TGG 0.561942 1_1:-59816327 None:intergenic
GTGCAAGAGCTGATGACGAA+TGG 0.570076 1_1:+59816266 Msa0032640:CDS
GTTGAACTTCATGCCAAGAT+CGG 0.571441 1_1:+59813939 Msa0032640:CDS
TACGTAAGTCAATATGGAGA+AGG 0.579347 1_1:+59813786 Msa0032640:CDS
ACTTACGTGATTGTTAATGT+TGG 0.581736 1_1:-59815466 None:intergenic
CAGATCTTCCACAATTTCAA+GGG 0.584405 1_1:+59815605 Msa0032640:CDS
TTCAATTCATGATTGTAGAG+TGG 0.589972 1_1:-59815220 None:intergenic
ATGGTCTCTAATGGTTCAAG+AGG 0.592027 1_1:+59813968 Msa0032640:CDS
AAAAGGACCATGGTCACTTG+AGG 0.594806 1_1:+59813743 Msa0032640:intron
TCTGAGTACTTTGAGCAACC+CGG 0.601606 1_1:+59815261 Msa0032640:CDS
CATTGCATGTCTCAATTACA+CGG 0.603342 1_1:+59815380 Msa0032640:CDS
TCAATATGGAGAAGGCAACT+GGG 0.626854 1_1:+59813794 Msa0032640:CDS
TTGTGGAAGATCTGATTCCG+TGG 0.637087 1_1:-59815596 None:intergenic
ACTTCTGGAATATAAGAACA+AGG 0.663405 1_1:+59815176 Msa0032640:CDS
ATCTCCATAGGTGATCGAAG+TGG 0.675143 1_1:-59816505 None:intergenic
AAATATGCTATGCAACAATG+TGG 0.683001 1_1:+59815414 Msa0032640:CDS
GATGACGAATGGAATGACAA+TGG 0.694058 1_1:+59816277 Msa0032640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATACATG+GGG + chr1_1:59814580-59814599 Msa0032640:intron 10.0%
!!! TTTATTTCATTCAAAATTTT+TGG - chr1_1:59816415-59816434 None:intergenic 10.0%
!!! AAAATTTTGAATGAAATAAA+TGG + chr1_1:59816415-59816434 Msa0032640:CDS 10.0%
!! CTAAATCCTAATTTAAAAAA+GGG + chr1_1:59813885-59813904 Msa0032640:CDS 15.0%
!! GTTTATAATAGAAAAAACAT+GGG - chr1_1:59814681-59814700 None:intergenic 15.0%
!! TGTTTATAATAGAAAAAACA+TGG - chr1_1:59814682-59814701 None:intergenic 15.0%
!! TGTTTATAATAGAAAAACAT+GGG - chr1_1:59814928-59814947 None:intergenic 15.0%
!! TTGTTTATAATAGAAAAACA+TGG - chr1_1:59814929-59814948 None:intergenic 15.0%
!! AACAAATACATAATAAGTAT+AGG - chr1_1:59815112-59815131 None:intergenic 15.0%
!! TAACATATATTAATTCTTTG+AGG - chr1_1:59816055-59816074 None:intergenic 15.0%
!!! CTGCAAATCTTTTTAATAAA+GGG - chr1_1:59813520-59813539 None:intergenic 20.0%
!!! CCTTTTTTAAATTAGGATTT+AGG - chr1_1:59813887-59813906 None:intergenic 20.0%
!! CCTAAATCCTAATTTAAAAA+AGG + chr1_1:59813884-59813903 Msa0032640:CDS 20.0%
!! GAATCATAATAGCATAATAA+AGG - chr1_1:59814266-59814285 None:intergenic 20.0%
!! AAAGTTTAATAGAGACAAAA+TGG + chr1_1:59814746-59814765 Msa0032640:intron 20.0%
!!! TGTTTTGATAAATAACTAGT+AGG - chr1_1:59814905-59814924 None:intergenic 20.0%
!! AATGCTTAAAATCATTTACA+TGG - chr1_1:59815925-59815944 None:intergenic 20.0%
!! TCAAAAGTTTGATATCTAAT+AGG - chr1_1:59816099-59816118 None:intergenic 20.0%
!! GTTTCTTTGTTCTTATATTA+TGG - chr1_1:59816246-59816265 None:intergenic 20.0%
!!! AACTTCAAAAAAGACATTTT+TGG + chr1_1:59816379-59816398 Msa0032640:CDS 20.0%
! CATAACCATTATAAATAGCA+CGG + chr1_1:59813320-59813339 Msa0032640:intron 25.0%
!!! AATTTTAGGAGAAAATTCCT+GGG + chr1_1:59813439-59813458 Msa0032640:intron 25.0%
!! GCTGCAAATCTTTTTAATAA+AGG - chr1_1:59813521-59813540 None:intergenic 25.0%
! AATTCAATCTTGATACTGTT+AGG - chr1_1:59813660-59813679 None:intergenic 25.0%
! GATGCTAATACATTGAAAAA+AGG + chr1_1:59813726-59813745 Msa0032640:intron 25.0%
! TTTAACACATCGAAAAAGTT+CGG - chr1_1:59813838-59813857 None:intergenic 25.0%
!! TTAAAAGTTGTCGTTTAAGA+TGG + chr1_1:59813853-59813872 Msa0032640:CDS 25.0%
!!! ATTGGACCCTTTTTTAAATT+AGG - chr1_1:59813894-59813913 None:intergenic 25.0%
! AGTTCTTCTTCTTTAGTAAT+TGG - chr1_1:59813912-59813931 None:intergenic 25.0%
! GCATAATAAAGGTAAATGAT+AGG - chr1_1:59814255-59814274 None:intergenic 25.0%
!! AACTAATGTATTTTCATGTG+AGG + chr1_1:59814350-59814369 Msa0032640:intron 25.0%
! TCATGTGAGGTTTATTTAAT+TGG + chr1_1:59814363-59814382 Msa0032640:intron 25.0%
! AGCACATATTGAAATAGATT+TGG - chr1_1:59814402-59814421 None:intergenic 25.0%
! TAGTCAACAATTCTCATTTA+AGG + chr1_1:59814481-59814500 Msa0032640:intron 25.0%
! TACATGCATGTAAACTATAT+TGG - chr1_1:59814544-59814563 None:intergenic 25.0%
!!! TGTTTTGGTAAATAACTAGT+AGG - chr1_1:59814658-59814677 None:intergenic 25.0%
!!! TGTTTTAGTAAAGTACAAGT+AGG + chr1_1:59814769-59814788 Msa0032640:intron 25.0%
!!! TGTTTTAGTAAAGTACAAGT+AGG + chr1_1:59814769-59814788 Msa0032640:intron 25.0%
! TATAGGAGACGATATATATA+GGG - chr1_1:59815095-59815114 None:intergenic 25.0%
! ATAATGAGATAAAGAACTTC+TGG + chr1_1:59815161-59815180 Msa0032640:intron 25.0%
! CATAGCATATTTGAAAAATG+AGG - chr1_1:59815406-59815425 None:intergenic 25.0%
! AGTTTCATTTGTCAAATTTC+AGG + chr1_1:59815548-59815567 Msa0032640:intron 25.0%
! GTTTCATTTGTCAAATTTCA+GGG + chr1_1:59815549-59815568 Msa0032640:intron 25.0%
!! TTCAACAATTTTATAGCACT+TGG - chr1_1:59815638-59815657 None:intergenic 25.0%
! TCCTCAAAATAAAATAAACG+TGG + chr1_1:59815824-59815843 Msa0032640:intron 25.0%
!!! TCCACGTTTATTTTATTTTG+AGG - chr1_1:59815828-59815847 None:intergenic 25.0%
!!! TTCAAAAAAGACATTTTTGG+CGG + chr1_1:59816382-59816401 Msa0032640:CDS 25.0%
! CATGAAATGAAAGTTGCTTT+CGG + chr1_1:59813260-59813279 Msa0032640:intron 30.0%
!! AATTGCCGTGCTATTTATAA+TGG - chr1_1:59813328-59813347 None:intergenic 30.0%
! AAACTCAGTGTGAGAATTTT+AGG + chr1_1:59813425-59813444 Msa0032640:intron 30.0%
!! GAATTTTAGGAGAAAATTCC+TGG + chr1_1:59813438-59813457 Msa0032640:intron 30.0%
ACAAGATTGTTAACGAAGTT+CGG - chr1_1:59813572-59813591 None:intergenic 30.0%
AAGTAGAAGTGGAATAAATG+CGG - chr1_1:59813606-59813625 None:intergenic 30.0%
AAGCAAGAAAAATGTAACGA+TGG + chr1_1:59813702-59813721 Msa0032640:intron 30.0%
ATACATTGAAAAAAGGACCA+TGG + chr1_1:59813733-59813752 Msa0032640:intron 30.0%
AGAGTATACGTAAGTCAATA+TGG + chr1_1:59813780-59813799 Msa0032640:CDS 30.0%
TAATTAAGTACGTACGGAAT+AGG - chr1_1:59814140-59814159 None:intergenic 30.0%
ATTCCGTACGTACTTAATTA+TGG + chr1_1:59814140-59814159 Msa0032640:intron 30.0%
GAACCATAATTAAGTACGTA+CGG - chr1_1:59814146-59814165 None:intergenic 30.0%
GTACTTAATTATGGTTCAAG+AGG + chr1_1:59814149-59814168 Msa0032640:intron 30.0%
TAATCCAAAATAACAGTGTG+TGG - chr1_1:59814452-59814471 None:intergenic 30.0%
! TAGAAAAAACATGGGTGTTT+TGG - chr1_1:59814673-59814692 None:intergenic 30.0%
ATAGGAGACGATATATATAG+GGG - chr1_1:59815094-59815113 None:intergenic 30.0%
GTATAGGAGACGATATATAT+AGG - chr1_1:59815096-59815115 None:intergenic 30.0%
!! ACTTCTGGAATATAAGAACA+AGG + chr1_1:59815176-59815195 Msa0032640:CDS 30.0%
TTCAATTCATGATTGTAGAG+TGG - chr1_1:59815223-59815242 None:intergenic 30.0%
AATCATGAATTGAATGCCAA+TGG + chr1_1:59815229-59815248 Msa0032640:CDS 30.0%
TCAAACTCATTTGAATCTGA+AGG - chr1_1:59815346-59815365 None:intergenic 30.0%
AAATATGCTATGCAACAATG+TGG + chr1_1:59815414-59815433 Msa0032640:CDS 30.0%
ACTTACGTGATTGTTAATGT+TGG - chr1_1:59815469-59815488 None:intergenic 30.0%
GTGCTATAAAATTGTTGAAG+AGG + chr1_1:59815639-59815658 Msa0032640:CDS 30.0%
! ATATTTGTCTGTCGTTGATT+TGG + chr1_1:59815699-59815718 Msa0032640:intron 30.0%
! AATATGTGACTTTTGATGCA+TGG - chr1_1:59815737-59815756 None:intergenic 30.0%
TTATAAACGTTATGCAAGTC+CGG + chr1_1:59815755-59815774 Msa0032640:intron 30.0%
! CCTTATAGTTCTATTCTACT+GGG + chr1_1:59815778-59815797 Msa0032640:intron 30.0%
! AGAGTTACAAGTCAGTTTTA+TGG + chr1_1:59815983-59816002 Msa0032640:intron 30.0%
!! GAGTTACAAGTCAGTTTTAT+GGG + chr1_1:59815984-59816003 Msa0032640:intron 30.0%
!! AGTTACAAGTCAGTTTTATG+GGG + chr1_1:59815985-59816004 Msa0032640:intron 30.0%
ATACACTAATCTGTGTGTTG+TGG - chr1_1:59813386-59813405 None:intergenic 35.0%
AGAAAATTCCTGGGTGTAAT+TGG + chr1_1:59813448-59813467 Msa0032640:intron 35.0%
GAAAATTCCTGGGTGTAATT+GGG + chr1_1:59813449-59813468 Msa0032640:intron 35.0%
ATGGTCAGATTAAGTAGAAG+TGG - chr1_1:59813617-59813636 None:intergenic 35.0%
ACTTCTACTTAATCTGACCA+TGG + chr1_1:59813616-59813635 Msa0032640:intron 35.0%
CTTCTACTTAATCTGACCAT+GGG + chr1_1:59813617-59813636 Msa0032640:intron 35.0%
TACGTAAGTCAATATGGAGA+AGG + chr1_1:59813786-59813805 Msa0032640:CDS 35.0%
TGAACCATTAGAGACCATTT+GGG - chr1_1:59813966-59813985 None:intergenic 35.0%
TTGAACCATTAGAGACCATT+TGG - chr1_1:59813967-59813986 None:intergenic 35.0%
TCAGTTGCCTATCATTTATG+CGG + chr1_1:59814068-59814087 Msa0032640:intron 35.0%
GTCAAAACCGCATAAATGAT+AGG - chr1_1:59814078-59814097 None:intergenic 35.0%
! TTCTCATTTAAGGTGAACGA+CGG + chr1_1:59814491-59814510 Msa0032640:intron 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG - chr1_1:59814804-59814823 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG + chr1_1:59814804-59814823 Msa0032640:intron 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG - chr1_1:59814804-59814823 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG + chr1_1:59814804-59814823 Msa0032640:intron 35.0%
TAGGAGACGATATATATAGG+GGG - chr1_1:59815093-59815112 None:intergenic 35.0%
TTTCATTTGTGTTAGTTGCC+TGG + chr1_1:59815130-59815149 Msa0032640:intron 35.0%
ATCTCATTATCTGTTCTTCC+AGG - chr1_1:59815151-59815170 None:intergenic 35.0%
CATTGCATGTCTCAATTACA+CGG + chr1_1:59815380-59815399 Msa0032640:CDS 35.0%
CATTTGTCAAATTTCAGGGA+TGG + chr1_1:59815553-59815572 Msa0032640:intron 35.0%
TCAGATCTTCCACAATTTCA+AGG + chr1_1:59815604-59815623 Msa0032640:CDS 35.0%
CAGATCTTCCACAATTTCAA+GGG + chr1_1:59815605-59815624 Msa0032640:CDS 35.0%
GTAGAATAGAACTATAAGGC+CGG - chr1_1:59815777-59815796 None:intergenic 35.0%
! GCCTTATAGTTCTATTCTAC+TGG + chr1_1:59815777-59815796 Msa0032640:intron 35.0%
CCCAGTAGAATAGAACTATA+AGG - chr1_1:59815781-59815800 None:intergenic 35.0%
!! CAGTTTTATGGGGTTGTTTT+AGG + chr1_1:59815995-59816014 Msa0032640:intron 35.0%
CTTAAGCACAATTGTGTACA+TGG - chr1_1:59816122-59816141 None:intergenic 35.0%
AATGGAGAAACTTGTCTGAT+TGG + chr1_1:59816295-59816314 Msa0032640:CDS 35.0%
CTTGCTTTAATGATCTCCAT+AGG - chr1_1:59816520-59816539 None:intergenic 35.0%
GCATAGTTCAACGCGTTATT+TGG + chr1_1:59813284-59813303 Msa0032640:intron 40.0%
TAGTTCAACGCGTTATTTGG+TGG + chr1_1:59813287-59813306 Msa0032640:intron 40.0%
TTTGCTTCTCTGTGTTGTGT+TGG - chr1_1:59813359-59813378 None:intergenic 40.0%
! AACTACGCACAATTTTCCCA+TGG - chr1_1:59813636-59813655 None:intergenic 40.0%
TCAATATGGAGAAGGCAACT+GGG + chr1_1:59813794-59813813 Msa0032640:CDS 40.0%
GTTGAACTTCATGCCAAGAT+CGG + chr1_1:59813939-59813958 Msa0032640:CDS 40.0%
ATGGTCTCTAATGGTTCAAG+AGG + chr1_1:59813968-59813987 Msa0032640:CDS 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG - chr1_1:59814808-59814827 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG - chr1_1:59814807-59814826 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG + chr1_1:59814807-59814826 Msa0032640:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG + chr1_1:59814808-59814827 Msa0032640:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG - chr1_1:59814808-59814827 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG - chr1_1:59814807-59814826 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG + chr1_1:59814807-59814826 Msa0032640:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG + chr1_1:59814808-59814827 Msa0032640:intron 40.0%
ACAAGGAAACGCACAAAACT+TGG + chr1_1:59815193-59815212 Msa0032640:CDS 40.0%
ACTCAGACTACTTTCTCCAT+TGG - chr1_1:59815248-59815267 None:intergenic 40.0%
AAGTATACATGTGACACGAG+TGG - chr1_1:59816161-59816180 None:intergenic 40.0%
ATCTCATTTCCTCTTCTTGC+AGG - chr1_1:59816214-59816233 None:intergenic 40.0%
GATGACGAATGGAATGACAA+TGG + chr1_1:59816277-59816296 Msa0032640:CDS 40.0%
TTGAGACATCAGCTTGATGT+TGG - chr1_1:59816330-59816349 None:intergenic 40.0%
TCAGACAAATCCGACATACA+TGG + chr1_1:59816352-59816371 Msa0032640:CDS 40.0%
GAAGTTCACTCCATGTATGT+CGG - chr1_1:59816365-59816384 None:intergenic 40.0%
AAAGATTTGCAGCAGCAGTC+CGG + chr1_1:59813528-59813547 Msa0032640:intron 45.0%
TCCGGAGAGTAGGCATTTAT+TGG + chr1_1:59813546-59813565 Msa0032640:intron 45.0%
GCCAATAAATGCCTACTCTC+CGG - chr1_1:59813550-59813569 None:intergenic 45.0%
AAAAGGACCATGGTCACTTG+AGG + chr1_1:59813743-59813762 Msa0032640:intron 45.0%
TCATCTTCCTCAAGTGACCA+TGG - chr1_1:59813753-59813772 None:intergenic 45.0%
GTCAATATGGAGAAGGCAAC+TGG + chr1_1:59813793-59813812 Msa0032640:CDS 45.0%
CCAAAATAACAGTGTGTGGC+TGG - chr1_1:59814448-59814467 None:intergenic 45.0%
!! CCAGCCACACACTGTTATTT+TGG + chr1_1:59814445-59814464 Msa0032640:intron 45.0%
GCACCCACCTAAAAACACTA+AGG + chr1_1:59814613-59814632 Msa0032640:intron 45.0%
GCACCCACCTAAAAACACTA+AGG - chr1_1:59814613-59814632 None:intergenic 45.0%
GCACCCACCTAAAAACACTA+AGG + chr1_1:59814613-59814632 Msa0032640:intron 45.0%
GCACCCACCTAAAAACACTA+AGG - chr1_1:59814613-59814632 None:intergenic 45.0%
TCTGAGTACTTTGAGCAACC+CGG + chr1_1:59815261-59815280 Msa0032640:CDS 45.0%
! TCAGGGATGGAACTCCTTTT+AGG + chr1_1:59815566-59815585 Msa0032640:intron 45.0%
!!! TCCTTTTAGGACCAAAGCCA+CGG + chr1_1:59815579-59815598 Msa0032640:CDS 45.0%
AAGATCTGATTCCGTGGCTT+TGG - chr1_1:59815593-59815612 None:intergenic 45.0%
TTGTGGAAGATCTGATTCCG+TGG - chr1_1:59815599-59815618 None:intergenic 45.0%
GAGTTGCACCCTTGAAATTG+TGG - chr1_1:59815616-59815635 None:intergenic 45.0%
TGTTAGTTGCCTGCAAGAAG+AGG + chr1_1:59816202-59816221 Msa0032640:intron 45.0%
GGTGATCGAAGTGGAAGTAA+AGG - chr1_1:59816499-59816518 None:intergenic 45.0%
ACTTCCACTTCGATCACCTA+TGG + chr1_1:59816501-59816520 Msa0032640:CDS 45.0%
ATCTCCATAGGTGATCGAAG+TGG - chr1_1:59816508-59816527 None:intergenic 45.0%
!! TATATATATATATATATACA+TGG + chr1_1:59814578-59814597 Msa0032640:intron 5.0%
!! ATATATATATATATATACAT+GGG + chr1_1:59814579-59814598 Msa0032640:intron 5.0%
!!! TAAACTTTATTTTAATTAAA+AGG - chr1_1:59814734-59814753 None:intergenic 5.0%
!!! TAAACTTTATTTTAATTAAA+AGG - chr1_1:59814734-59814753 None:intergenic 5.0%
! TCCTGGGTGTAATTGGGTTG+TGG + chr1_1:59813455-59813474 Msa0032640:intron 50.0%
! CCTGGGTGTAATTGGGTTGT+GGG + chr1_1:59813456-59813475 Msa0032640:intron 50.0%
ATGCCAAGATCGGACCCAAA+TGG + chr1_1:59813949-59813968 Msa0032640:CDS 50.0%
AGACCATTTGGGTCCGATCT+TGG - chr1_1:59813955-59813974 None:intergenic 50.0%
CGGACCCAAATGGTCTCTAA+TGG + chr1_1:59813959-59813978 Msa0032640:CDS 50.0%
TGGGTGCAAGTTAACAGTGG+GGG - chr1_1:59814847-59814866 None:intergenic 50.0%
GTGGGTGCAAGTTAACAGTG+GGG - chr1_1:59814848-59814867 None:intergenic 50.0%
GGTGGGTGCAAGTTAACAGT+GGG - chr1_1:59814849-59814868 None:intergenic 50.0%
AGGTGGGTGCAAGTTAACAG+TGG - chr1_1:59814824-59814843 None:intergenic 50.0%
! TGTGAGACATCAGCTTGCTC+CGG - chr1_1:59815283-59815302 None:intergenic 50.0%
!! TCCGTGGCTTTGGTCCTAAA+AGG - chr1_1:59815583-59815602 None:intergenic 50.0%
! GTGCAAGAGCTGATGACGAA+TGG + chr1_1:59816266-59816285 Msa0032640:CDS 50.0%
CCCACAACCCAATTACACCC+AGG - chr1_1:59813459-59813478 None:intergenic 55.0%
! GTGAGACATCAGCTTGCTCC+GGG - chr1_1:59815282-59815301 None:intergenic 55.0%
GCAGCAGCAGTCCGGAGAGT+AGG + chr1_1:59813536-59813555 Msa0032640:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 59813250 59816549 59813250 ID=Msa0032640;Name=Msa0032640
chr1_1 mRNA 59813250 59816549 59813250 ID=Msa0032640-mRNA-1;Parent=Msa0032640;Name=Msa0032640-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.4|0.16|0.83|0.4|0.33|6|0|326
chr1_1 exon 59813250 59813256 59813250 ID=Msa0032640-mRNA-1:exon:18585;Parent=Msa0032640-mRNA-1
chr1_1 exon 59813748 59813989 59813748 ID=Msa0032640-mRNA-1:exon:18586;Parent=Msa0032640-mRNA-1
chr1_1 exon 59815175 59815340 59815175 ID=Msa0032640-mRNA-1:exon:18587;Parent=Msa0032640-mRNA-1
chr1_1 exon 59815350 59815482 59815350 ID=Msa0032640-mRNA-1:exon:18588;Parent=Msa0032640-mRNA-1
chr1_1 exon 59815570 59815660 59815570 ID=Msa0032640-mRNA-1:exon:18589;Parent=Msa0032640-mRNA-1
chr1_1 exon 59816208 59816549 59816208 ID=Msa0032640-mRNA-1:exon:18590;Parent=Msa0032640-mRNA-1
chr1_1 CDS 59813250 59813256 59813250 ID=Msa0032640-mRNA-1:cds;Parent=Msa0032640-mRNA-1
chr1_1 CDS 59813748 59813989 59813748 ID=Msa0032640-mRNA-1:cds;Parent=Msa0032640-mRNA-1
chr1_1 CDS 59815175 59815340 59815175 ID=Msa0032640-mRNA-1:cds;Parent=Msa0032640-mRNA-1
chr1_1 CDS 59815350 59815482 59815350 ID=Msa0032640-mRNA-1:cds;Parent=Msa0032640-mRNA-1
chr1_1 CDS 59815570 59815660 59815570 ID=Msa0032640-mRNA-1:cds;Parent=Msa0032640-mRNA-1
chr1_1 CDS 59816208 59816549 59816208 ID=Msa0032640-mRNA-1:cds;Parent=Msa0032640-mRNA-1
Gene Sequence

>Msa0032640

ATGTTAGGACCATGGTCACTTGAGGAAGATGAAAAATTAAGAGTATACGTAAGTCAATATGGAGAAGGCAACTGGGATGCAGTTAGAAAGAAAACCGAACTTTTTCGATGTGTTAAAAGTTGTCGTTTAAGATGGCTTAATCACCTAAATCCTAATTTAAAAAAGGGTCCAATTACTAAAGAAGAAGAACTTAAAATCGTTGAACTTCATGCCAAGATCGGACCCAAATGGTCTCTAATGGTTCAAGAGAACTTCTGGAATATAAGAACAAGGAAACGCACAAAACTTGGTTTGCCACTCTACAATCATGAATTGAATGCCAATGGAGAAAGTAGTCTGAGTACTTTGAGCAACCCGGAGCAAGCTGATGTCTCACATGAAATGAAATTCAAAAATGATATTTTCAGCAGAAAACATTCAAATGAGTTTGAACAACTTTCAAACTCATTGCATGTCTCAATTACACGGCCTCATTTTTCAAATATGCTATGCAACAATGTGGTCAATACTTCTATAAACAATAATGCTTCACCAACATTAACAATCACGGATGGAACTCCTTTTAGGACCAAAGCCACGGAATCAGATCTTCCACAATTTCAAGGGTGCAACTCCAAGTGCTATAAAATTGTTGAAGAGTTGCCTGCAAGAAGAGGAAATGAGATAGATAACTACCATAATATAAGAACAAAGAAACGTGCAAGAGCTGATGACGAATGGAATGACAATGGAGAAACTTGTCTGATTGGTTTGAGCAACCAACATCAAGCTGATGTCTCAAAATCAGACAAATCCGACATACATGGAGTGAACTTCAAAAAAGACATTTTTGGCGGAAAAGATCCAAAAATTTTGAATGAAATAAATGGAAGCAACTTTGAAGAACTTTCAAACTCATTTTATTCATATTCACTACTTCACAAGTATCCTTTACTTCCACTTCGATCACCTATGGAGATCATTAAAGCAAGACAAAAATGA
Protein sequence

>Msa0032640

MLGPWSLEEDEKLRVYVSQYGEGNWDAVRKKTELFRCVKSCRLRWLNHLNPNLKKGPITKEEELKIVELHAKIGPKWSLMVQENFWNIRTRKRTKLGLPLYNHELNANGESSLSTLSNPEQADVSHEMKFKNDIFSRKHSNEFEQLSNSLHVSITRPHFSNMLCNNVVNTSINNNASPTLTITDGTPFRTKATESDLPQFQGCNSKCYKIVEELPARRGNEIDNYHNIRTKKRARADDEWNDNGETCLIGLSNQHQADVSKSDKSDIHGVNFKKDIFGGKDPKILNEINGSNFEELSNSFYSYSLLHKYPLLPLRSPMEIIKARQK*