AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033680 MtrunA17_Chr1g0184841 99.645 282 1 0 1 282 1 282 0.0 576
Msa0033680 MtrunA17_Chr1g0190731 80.571 175 34 0 104 278 177 351 3.03e-97 290
Msa0033680 MtrunA17_Chr4g0074161 65.854 164 46 3 108 262 194 356 3.05e-63 204
Msa0033680 MtrunA17_Chr1g0152131 51.579 95 45 1 91 184 231 325 1.42e-22 96.3
Msa0033680 MtrunA17_Chr7g0234761 60.000 75 29 1 111 184 308 382 4.43e-22 95.5
Msa0033680 MtrunA17_Chr8g0339091 60.000 75 29 1 111 184 282 356 7.41e-22 94.7
Msa0033680 MtrunA17_Chr3g0131771 48.980 98 49 1 112 208 139 236 7.64e-22 93.2
Msa0033680 MtrunA17_Chr3g0144641 65.152 66 22 1 120 184 191 256 5.00e-21 91.7
Msa0033680 MtrunA17_Chr8g0365941 63.636 66 23 1 120 184 305 370 3.00e-20 90.1
Msa0033680 MtrunA17_Chr4g0035101 63.636 66 23 1 120 184 143 208 3.56e-20 89.0
Msa0033680 MtrunA17_Chr5g0415291 56.000 75 32 1 111 184 103 177 5.69e-20 86.3
Msa0033680 MtrunA17_Chr5g0421111 62.687 67 24 1 119 184 364 430 6.84e-20 89.4
Msa0033680 MtrunA17_Chr8g0363921 60.606 66 25 1 120 184 151 216 1.44e-19 86.3
Msa0033680 MtrunA17_Chr8g0385911 50.588 85 37 2 119 202 144 224 1.67e-19 86.7
Msa0033680 MtrunA17_Chr4g0014771 62.121 66 24 1 119 183 117 182 1.99e-18 81.3
Msa0033680 MtrunA17_Chr1g0193321 50.000 74 33 1 122 195 464 533 7.33e-18 83.6
Msa0033680 MtrunA17_Chr1g0152651 58.462 65 27 0 119 183 273 337 1.23e-17 82.0
Msa0033680 MtrunA17_Chr1g0174271 54.667 75 33 1 113 186 291 365 1.58e-17 81.6
Msa0033680 MtrunA17_Chr3g0134741 48.780 82 42 0 119 200 228 309 2.62e-17 80.5
Msa0033680 MtrunA17_Chr1g0174161 48.864 88 39 3 119 205 159 241 3.28e-17 80.1
Msa0033680 MtrunA17_Chr6g0484271 57.576 66 27 1 120 184 155 220 3.74e-17 79.3
Msa0033680 MtrunA17_Chr1g0182791 50.000 72 32 1 122 193 319 386 3.96e-17 81.3
Msa0033680 MtrunA17_Chr5g0393721 56.923 65 28 0 119 183 223 287 5.49e-17 79.7
Msa0033680 MtrunA17_Chr1g0153241 42.697 89 44 2 100 188 71 152 6.80e-17 78.6
Msa0033680 MtrunA17_Chr7g0258161 56.716 67 28 1 119 184 172 238 3.53e-16 77.4
Msa0033680 MtrunA17_Chr7g0270871 53.571 56 26 0 131 186 213 268 3.99e-16 77.4
Msa0033680 MtrunA17_Chr1g0207311 51.316 76 37 0 108 183 184 259 4.56e-16 76.6
Msa0033680 MtrunA17_Chr7g0262691 45.070 71 39 0 122 192 254 324 6.67e-16 77.4
Msa0033680 MtrunA17_Chr3g0134001 48.750 80 40 1 113 192 164 242 1.33e-15 75.1
Msa0033680 MtrunA17_Chr7g0271251 47.368 76 37 1 122 197 434 506 1.44e-15 76.6
Msa0033680 MtrunA17_Chr8g0351881 52.174 69 32 1 119 186 315 383 1.62e-15 75.9
Msa0033680 MtrunA17_Chr7g0258181 45.882 85 36 2 103 186 235 310 2.14e-15 75.1
Msa0033680 MtrunA17_Chr3g0095391 49.206 63 32 0 122 184 311 373 2.35e-15 75.9
Msa0033680 MtrunA17_Chr4g0032951 53.623 69 31 1 119 186 354 422 2.38e-15 75.5
Msa0033680 MtrunA17_Chr5g0435021 41.304 92 50 2 93 183 193 281 3.03e-15 74.3
Msa0033680 MtrunA17_Chr2g0329041 54.688 64 28 1 119 181 331 394 9.29e-15 73.9
Msa0033680 MtrunA17_Chr1g0207301 47.059 68 36 0 116 183 284 351 1.01e-14 73.6
Msa0033680 MtrunA17_Chr5g0402031 41.304 92 46 2 131 217 116 204 1.27e-14 73.2
Msa0033680 MtrunA17_Chr8g0384141 49.333 75 38 0 108 182 102 176 1.31e-14 72.0
Msa0033680 MtrunA17_Chr1g0185741 33.333 126 72 1 126 251 190 303 2.24e-14 72.0
Msa0033680 MtrunA17_Chr3g0087771 53.030 66 30 1 119 183 321 386 7.07e-14 71.2
Msa0033680 MtrunA17_Chr7g0231461 43.750 64 36 0 120 183 297 360 1.70e-12 67.4
Msa0033680 MtrunA17_Chr7g0243041 47.170 53 28 0 127 179 33 85 5.29e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033680 AT4G02590.2 70.358 307 64 7 2 281 3 309 9.30e-130 371
Msa0033680 AT4G02590.1 70.358 307 64 7 2 281 3 309 9.30e-130 371
Msa0033680 AT4G02590.3 78.723 235 44 4 53 281 12 246 2.00e-115 332
Msa0033680 AT1G03040.1 68.919 296 62 8 8 282 16 302 1.61e-112 327
Msa0033680 AT1G03040.3 63.240 321 69 7 8 282 16 333 3.77e-108 317
Msa0033680 AT1G03040.2 67.797 295 62 9 8 282 16 297 4.71e-108 315
Msa0033680 AT2G24260.2 65.359 153 48 2 113 262 28 178 1.28e-62 198
Msa0033680 AT2G24260.1 65.359 153 48 2 113 262 131 281 1.49e-60 196
Msa0033680 AT5G58010.1 49.541 218 81 5 72 276 62 263 3.12e-60 193
Msa0033680 AT4G30980.1 57.714 175 64 2 106 280 116 280 6.67e-59 190
Msa0033680 AT4G30980.2 57.714 175 64 2 106 280 164 328 1.14e-58 191
Msa0033680 AT5G50915.3 53.333 90 37 2 112 200 128 213 2.68e-23 96.3
Msa0033680 AT5G50915.4 53.333 90 37 2 112 200 128 213 2.68e-23 96.3
Msa0033680 AT5G50915.1 53.333 90 37 2 112 200 128 213 3.12e-23 96.7
Msa0033680 AT5G50915.2 53.333 90 37 2 112 200 128 213 3.12e-23 96.7
Msa0033680 AT5G48560.2 61.333 75 28 1 111 184 292 366 3.67e-22 95.9
Msa0033680 AT5G48560.1 61.333 75 28 1 111 184 292 366 3.77e-22 96.3
Msa0033680 AT3G23690.1 45.378 119 55 3 67 184 147 256 4.77e-21 92.0
Msa0033680 AT1G10120.2 64.179 67 23 1 119 184 205 271 9.73e-21 90.9
Msa0033680 AT1G10120.1 64.179 67 23 1 119 184 205 271 9.73e-21 90.9
Msa0033680 AT3G07340.1 64.179 67 23 1 119 184 257 323 1.44e-20 91.3
Msa0033680 AT3G07340.2 65.152 66 22 1 120 184 258 323 1.53e-20 91.3
Msa0033680 AT4G34530.1 62.687 67 24 1 119 184 171 237 1.57e-20 90.1
Msa0033680 AT1G68920.3 63.636 66 23 1 120 184 302 367 2.48e-20 90.9
Msa0033680 AT1G68920.1 63.636 66 23 1 120 184 303 368 2.54e-20 90.9
Msa0033680 AT1G68920.4 63.636 66 23 1 120 184 303 368 2.54e-20 90.9
Msa0033680 AT1G68920.2 63.636 66 23 1 120 184 303 368 2.54e-20 90.9
Msa0033680 AT5G62610.2 37.594 133 67 3 111 227 144 276 4.69e-20 87.8
Msa0033680 AT5G62610.1 37.594 133 67 3 111 227 144 276 4.69e-20 87.8
Msa0033680 AT1G26260.3 52.273 88 36 3 119 205 171 253 7.49e-20 88.2
Msa0033680 AT1G26260.5 52.273 88 36 3 119 205 200 282 7.49e-20 88.6
Msa0033680 AT1G26260.4 52.273 88 36 3 119 205 222 304 1.02e-19 88.6
Msa0033680 AT1G26260.1 52.273 88 36 3 119 205 222 304 1.02e-19 88.6
Msa0033680 AT1G26260.6 52.273 88 36 3 119 205 222 304 1.02e-19 88.6
Msa0033680 AT1G26260.2 52.273 88 36 3 119 205 222 304 1.02e-19 88.6
Msa0033680 AT4G33880.1 51.685 89 43 0 116 204 262 350 2.34e-19 87.0
Msa0033680 AT2G18300.1 60.606 66 25 1 120 184 185 250 2.38e-19 86.7
Msa0033680 AT2G18300.2 60.606 66 25 1 120 184 185 250 2.40e-19 86.7
Msa0033680 AT2G18300.3 60.606 66 25 1 120 184 185 250 3.33e-19 86.7
Msa0033680 AT1G25330.1 52.326 86 39 2 112 196 96 180 3.65e-19 84.3
Msa0033680 AT1G59640.1 60.606 66 25 1 120 184 136 201 4.82e-19 84.7
Msa0033680 AT1G73830.2 62.121 66 24 1 120 184 147 212 4.90e-19 84.7
Msa0033680 AT1G73830.1 62.121 66 24 1 120 184 147 212 5.19e-19 84.7
Msa0033680 AT4G36540.2 59.091 66 26 1 120 184 141 206 8.85e-19 84.7
Msa0033680 AT4G36540.1 59.091 66 26 1 120 184 141 206 9.07e-19 84.7
Msa0033680 AT2G14760.1 50.575 87 43 0 116 202 233 319 1.17e-18 84.7
Msa0033680 AT1G59640.2 60.606 66 25 1 120 184 136 201 1.49e-18 84.7
Msa0033680 AT1G18400.2 56.000 75 31 2 119 192 144 217 2.20e-18 82.8
Msa0033680 AT1G18400.1 60.606 66 25 1 120 184 145 210 4.40e-18 82.0
Msa0033680 AT3G57800.2 39.416 137 58 3 120 231 204 340 4.93e-18 83.6
Msa0033680 AT1G27740.1 43.158 95 53 1 90 183 136 230 9.34e-18 81.3
Msa0033680 AT2G42300.1 43.697 119 54 5 119 229 184 297 2.15e-17 81.3
Msa0033680 AT4G09180.1 60.606 66 25 1 119 183 183 248 2.84e-17 79.7
Msa0033680 AT1G09530.3 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0033680 AT1G09530.2 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0033680 AT1G09530.5 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0033680 AT1G09530.1 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0033680 AT1G09530.4 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0033680 AT1G09530.6 50.000 64 32 0 122 185 339 402 4.23e-17 81.3
Msa0033680 AT1G35460.1 60.606 66 25 1 119 183 180 245 6.22e-17 79.0
Msa0033680 AT2G42300.4 54.023 87 34 4 120 205 185 266 7.89e-17 79.0
Msa0033680 AT2G42280.1 56.522 69 29 1 119 186 278 346 8.26e-17 79.7
Msa0033680 AT2G20180.7 50.794 63 31 0 122 184 209 271 9.96e-17 80.1
Msa0033680 AT2G20180.1 50.794 63 31 0 122 184 209 271 9.96e-17 80.1
Msa0033680 AT2G20180.5 50.794 63 31 0 122 184 209 271 9.96e-17 80.1
Msa0033680 AT2G20180.4 50.794 63 31 0 122 184 280 342 1.36e-16 79.7
Msa0033680 AT2G20180.6 50.794 63 31 0 122 184 280 342 1.36e-16 79.7
Msa0033680 AT2G20180.2 50.794 63 31 0 122 184 280 342 1.36e-16 79.7
Msa0033680 AT2G20180.3 50.794 63 31 0 122 184 280 342 1.36e-16 79.7
Msa0033680 AT2G14760.3 45.000 100 42 1 116 202 233 332 2.88e-16 78.2
Msa0033680 AT5G43175.1 49.275 69 35 0 115 183 127 195 3.01e-16 76.3
Msa0033680 AT2G42280.3 59.375 64 25 1 119 181 278 341 8.79e-16 77.0
Msa0033680 AT2G20180.8 51.667 60 29 0 122 181 280 339 1.32e-15 76.3
Msa0033680 AT1G51140.1 55.072 69 30 1 119 186 303 371 5.69e-15 74.7
Msa0033680 AT3G21330.1 60.714 56 22 0 127 182 276 331 1.17e-14 73.6
Msa0033680 AT1G66470.1 47.945 73 37 1 129 200 204 276 1.64e-14 72.8
Msa0033680 AT5G37800.1 47.945 73 37 1 129 200 210 282 2.51e-14 72.0
Msa0033680 AT4G36930.1 50.847 59 29 0 126 184 197 255 4.28e-14 72.0
Msa0033680 AT5G67110.1 50.847 59 28 1 131 188 98 156 1.06e-13 68.9
Msa0033680 AT4G28790.1 44.118 68 38 0 117 184 268 335 2.06e-13 70.1
Msa0033680 AT4G00050.2 45.312 64 35 0 120 183 105 168 2.49e-13 69.3
Msa0033680 AT4G00050.1 45.312 64 35 0 120 183 207 270 4.95e-13 68.9
Msa0033680 AT4G00050.3 45.312 64 35 0 120 183 207 270 6.02e-13 68.6
Msa0033680 AT4G28815.2 43.860 57 32 0 123 179 71 127 9.24e-13 66.6
Msa0033680 AT2G46970.2 39.189 74 41 1 122 195 194 263 2.17e-12 67.0
Msa0033680 AT2G46970.1 39.189 74 41 1 122 195 225 294 2.23e-12 67.0
Msa0033680 AT2G46970.3 39.189 74 41 1 122 195 203 272 2.31e-12 67.0
Msa0033680 AT4G28815.1 43.860 57 32 0 123 179 147 203 2.35e-12 66.6
Msa0033680 AT2G43140.1 36.220 127 66 4 59 182 83 197 2.55e-12 65.1
Msa0033680 AT2G43140.2 53.846 65 29 1 119 182 230 294 2.77e-12 66.2
Msa0033680 AT5G01305.1 47.541 61 32 0 119 179 36 96 3.63e-12 63.9
Msa0033680 AT4G28800.1 36.000 75 44 1 123 197 252 322 4.56e-12 66.2
Msa0033680 AT2G43010.1 53.333 60 28 0 123 182 254 313 4.91e-12 66.2
Msa0033680 AT2G43010.2 53.333 60 28 0 123 182 254 313 4.93e-12 66.2
Msa0033680 AT4G28790.2 43.750 64 36 0 117 180 268 331 5.40e-12 65.9
Msa0033680 AT2G43010.3 53.333 60 28 0 123 182 261 320 5.45e-12 65.9
Msa0033680 AT3G59060.3 49.206 63 32 0 122 184 252 314 6.11e-12 65.9
Msa0033680 AT3G59060.2 49.206 63 32 0 122 184 252 314 6.11e-12 65.9
Msa0033680 AT3G59060.4 49.206 63 32 0 122 184 252 314 6.11e-12 65.9
Msa0033680 AT3G59060.1 49.206 63 32 0 122 184 252 314 6.38e-12 65.9
Msa0033680 AT2G43010.5 53.333 60 28 0 123 182 296 355 6.80e-12 65.9
Msa0033680 AT2G43010.4 53.333 60 28 0 123 182 254 313 7.31e-12 65.5
Msa0033680 AT4G00120.1 43.210 81 44 2 114 192 105 185 1.13e-11 63.2

Find 157 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGGAGTGGGAAGCGTTTC+CGG 0.137108 1_1:-61302742 Msa0033680:CDS
AAGAAGGGGTTTCGCTTTAT+TGG 0.207337 1_1:+61303128 None:intergenic
TTATGTTAAGTTACATTCTT+AGG 0.274593 1_1:+61302698 None:intergenic
CGGGAGTGGGAAGCGTTTCC+GGG 0.277270 1_1:-61302741 Msa0033680:CDS
TCATGCACCGGTTTATCATT+TGG 0.277273 1_1:-61302819 Msa0033680:CDS
AGCGCCTCATCTACTACTTC+TGG 0.285746 1_1:-61299499 Msa0033680:three_prime_UTR
GTGGCTTGTTTGTTGACTAT+TGG 0.286493 1_1:-61298700 Msa0033680:three_prime_UTR
CAAATCAATGACTAAAATTA+AGG 0.288738 1_1:+61299445 None:intergenic
TATAGTAGCTTAGTATGAAT+TGG 0.293266 1_1:+61298893 None:intergenic
CATGCACCGGTTTATCATTT+GGG 0.298977 1_1:-61302818 Msa0033680:CDS
ATTACCTCGACTGACGATAA+TGG 0.304796 1_1:+61299872 None:intergenic
AAAGAATAGCTGAAAGAATC+AGG 0.318251 1_1:-61301375 Msa0033680:CDS
TATGGAAAATTTCTTGTAAA+GGG 0.323225 1_1:-61299300 Msa0033680:three_prime_UTR
AGTTTCAGGCTTAACTATAC+TGG 0.328183 1_1:+61299582 None:intergenic
TATGGAGGAGGAATAGTTTC+AGG 0.332933 1_1:+61299568 None:intergenic
TTGAAGCCTGATGAAGCTTC+CGG 0.337349 1_1:-61302761 Msa0033680:CDS
CGCACTCTAGGTCGCATTGC+TGG 0.338179 1_1:+61301582 None:intergenic
TCTCACCTTGGCGCTGGAGG+AGG 0.354681 1_1:-61302845 Msa0033680:CDS
AGCAGACCCTATCCTGTCTA+TGG 0.355480 1_1:-61299318 Msa0033680:three_prime_UTR
TGGATTATGTCAAATTCTTA+AGG 0.362058 1_1:-61300546 Msa0033680:CDS
TCTGAGTGACTAGTTGAAAA+TGG 0.367989 1_1:+61303081 None:intergenic
CATCACTAATAAATACTATA+TGG 0.373746 1_1:+61299129 None:intergenic
TGAAGCCTGATGAAGCTTCC+GGG 0.376117 1_1:-61302760 Msa0033680:CDS
CCTCTTCTTGCCCGCACTCT+AGG 0.378408 1_1:+61301570 None:intergenic
ATAGTAGCTTAGTATGAATT+GGG 0.382743 1_1:+61298894 None:intergenic
TTACCTCGACTGACGATAAT+GGG 0.384485 1_1:+61299873 None:intergenic
CATAAAGTTGCATTCAAAGT+AGG 0.388409 1_1:-61299422 Msa0033680:three_prime_UTR
CCACTCCCGGAAGCTTCATC+AGG 0.392070 1_1:+61302755 None:intergenic
GTGGGACCTTGTAAAAGGTT+AGG 0.393557 1_1:-61299159 Msa0033680:three_prime_UTR
AGCTCATGGAAGAAAATGTT+GGG 0.395774 1_1:-61299696 Msa0033680:CDS
CATTGTCGAAGGCATGTCTA+TGG 0.405574 1_1:+61299550 None:intergenic
TCACTTGAGAGTTGAGAATC+AGG 0.406798 1_1:+61298815 None:intergenic
GGGATGTGGGACCTTGTAAA+AGG 0.408505 1_1:-61299164 Msa0033680:three_prime_UTR
TGACTAAAATTAAGGAGGTT+AGG 0.414380 1_1:+61299453 None:intergenic
GATTTCCTTGAACAAATTCT+CGG 0.419929 1_1:-61302944 Msa0033680:CDS
AGCTACTATAATCAAGTAAT+GGG 0.421241 1_1:-61298880 Msa0033680:three_prime_UTR
CTATGGAAAATTTCTTGTAA+AGG 0.421865 1_1:-61299301 Msa0033680:three_prime_UTR
GCTGCCTCTCACCTTGGCGC+TGG 0.427725 1_1:-61302851 Msa0033680:CDS
GTTTCGCTTTATTGGATGCT+TGG 0.428370 1_1:+61303136 None:intergenic
CCGTCGGCGGAGGTGAAATT+CGG 0.429325 1_1:+61302917 None:intergenic
TTTGGGTTTGAGCTTGGACC+AGG 0.429629 1_1:-61302801 Msa0033680:CDS
TTATCATTTGGGTTTGAGCT+TGG 0.431085 1_1:-61302807 Msa0033680:CDS
CAGGAAGAAGGAAGTGAGAG+TGG 0.433710 1_1:-61299778 Msa0033680:CDS
GCCTCTCACCTTGGCGCTGG+AGG 0.436271 1_1:-61302848 Msa0033680:CDS
CTCACCTTGGCGCTGGAGGA+GGG 0.440875 1_1:-61302844 Msa0033680:CDS
GGTCGCATTGCTGGTGGTTG+TGG 0.453211 1_1:+61301591 None:intergenic
CTCAAACCCAAATGATAAAC+CGG 0.453773 1_1:+61302812 None:intergenic
GCGCCTCATCTACTACTTCT+GGG 0.457754 1_1:-61299498 Msa0033680:three_prime_UTR
GAAGACCGAGAATTTGTTCA+AGG 0.461614 1_1:+61302939 None:intergenic
TGGGAGAAACCAACCAGCTT+GGG 0.463571 1_1:-61299758 Msa0033680:CDS
GGAACAGACAAATAACTTGC+GGG 0.464105 1_1:+61299474 None:intergenic
GGCGACGCTGCCTCTCACCT+TGG 0.464276 1_1:-61302857 Msa0033680:CDS
AAGCTACTATAATCAAGTAA+TGG 0.466355 1_1:-61298881 Msa0033680:three_prime_UTR
GACTGATCGAGCTGCCATGC+TGG 0.479757 1_1:-61300578 Msa0033680:CDS
TTGAGCTTGGACCAGGGTAA+AGG 0.479838 1_1:-61302794 Msa0033680:CDS
TGGAGGAGGGTTTCATGCAC+CGG 0.480121 1_1:-61302831 Msa0033680:CDS
CCGGAAACGCTTCCCACTCC+CGG 0.481302 1_1:+61302742 None:intergenic
AAGGTGAGAGGCAGCGTCGC+CGG 0.485809 1_1:+61302859 None:intergenic
TTGTTGACTATTGGATGGAT+TGG 0.486343 1_1:-61298691 Msa0033680:three_prime_UTR
GAGGCGCTCGATGGGACCAC+TGG 0.486947 1_1:+61299514 None:intergenic
TCCCCACAGCATCGCTGAAA+GGG 0.487553 1_1:-61301535 Msa0033680:intron
CTTGTTTGTTGACTATTGGA+TGG 0.488344 1_1:-61298696 Msa0033680:three_prime_UTR
AGCTTAGTATGAATTGGGTT+AGG 0.488605 1_1:+61298899 None:intergenic
ATTCTTAAGGCTTCAAGTGA+AGG 0.492189 1_1:-61300533 Msa0033680:intron
ATTGCAGATGCCAGTGAGAT+GGG 0.492955 1_1:+61299631 None:intergenic
TTGGACCAGGGTAAAGGAGG+AGG 0.494681 1_1:-61302788 Msa0033680:CDS
TGTTGAAGTGCAATAGATAA+TGG 0.494811 1_1:-61299086 Msa0033680:three_prime_UTR
CCTGATGAAGCTTCCGGGAG+TGG 0.498744 1_1:-61302755 Msa0033680:CDS
AGCGTCGGTTCCGTCGGCGG+AGG 0.501900 1_1:+61302907 None:intergenic
CCGAATTTCACCTCCGCCGA+CGG 0.502344 1_1:-61302917 Msa0033680:CDS
TTCAGACACAAGACACAAGA+AGG 0.502645 1_1:+61303112 None:intergenic
AGCCGGTGCAGTGGCTCCAC+TGG 0.503330 1_1:-61299906 Msa0033680:CDS
TGGGACCTTGTAAAAGGTTA+GGG 0.504824 1_1:-61299158 Msa0033680:three_prime_UTR
ATGAGTAGATTGGGTGGAGC+CGG 0.504884 1_1:-61299923 Msa0033680:CDS
GAAATCGTCGGCGGGTGTAT+CGG 0.505672 1_1:+61302961 None:intergenic
GGAGCAGCAGGAACTGTAGT+AGG 0.506388 1_1:+61301612 None:intergenic
TCACCCTTTCAGCGATGCTG+TGG 0.507317 1_1:+61301532 None:intergenic
CGGAGAAGCGTCGGTTCCGT+CGG 0.507774 1_1:+61302901 None:intergenic
GCTGGTGGTTGTGGAGCAGC+AGG 0.508567 1_1:+61301600 None:intergenic
AAGCTCATGGAAGAAAATGT+TGG 0.509498 1_1:-61299697 Msa0033680:CDS
GTGGGAGAAACCAACCAGCT+TGG 0.509556 1_1:-61299759 Msa0033680:CDS
CTTACTGATTAAGAGCCACT+TGG 0.510794 1_1:+61298844 None:intergenic
ACCACTTCTCCCAAGCTGGT+TGG 0.515047 1_1:+61299749 None:intergenic
AGCAGGAACTGTAGTAGGCA+TGG 0.515934 1_1:+61301617 None:intergenic
TAAAATTTGTCAAAGTGATG+TGG 0.523763 1_1:-61298719 Msa0033680:three_prime_UTR
TTGAGGTGTGTGTATGTGTG+TGG 0.524731 1_1:-61299004 Msa0033680:three_prime_UTR
GACATGCCTTCGACAATGCT+TGG 0.526093 1_1:-61299545 Msa0033680:three_prime_UTR
TATTGCAGATGCCAGTGAGA+TGG 0.526193 1_1:+61299630 None:intergenic
CACCCTTTCAGCGATGCTGT+GGG 0.526622 1_1:+61301533 None:intergenic
AGTTGTCCGACGGTTGCGAT+TGG 0.526806 1_1:+61299605 None:intergenic
ACCAACCAGCTTGGGAGAAG+TGG 0.527139 1_1:-61299750 Msa0033680:CDS
GAGTTAAGCTGCAGCATCAT+CGG 0.527777 1_1:+61302881 None:intergenic
TGATGTAAGTGCTTTGATAG+TGG 0.527825 1_1:-61299206 Msa0033680:three_prime_UTR
TCCTCCAGCGCCAAGGTGAG+AGG 0.528910 1_1:+61302847 None:intergenic
TAGTAGATGAGGCGCTCGAT+GGG 0.530898 1_1:+61299506 None:intergenic
ATCCCCACAGCATCGCTGAA+AGG 0.531960 1_1:-61301536 Msa0033680:CDS
TTAGACCACTTCTCCCAAGC+TGG 0.534418 1_1:+61299745 None:intergenic
CTGCATAATGCCCATCTCAC+TGG 0.536918 1_1:-61299641 Msa0033680:CDS
GATGTAAGTGCTTTGATAGT+GGG 0.537670 1_1:-61299205 Msa0033680:three_prime_UTR
CTGATGAAGCTTCCGGGAGT+GGG 0.540261 1_1:-61302754 Msa0033680:CDS
AATGGTTGCTTTAAGAATGC+TGG 0.540682 1_1:-61299068 Msa0033680:three_prime_UTR
AGGAAGAAGGAAGTGAGAGT+GGG 0.541139 1_1:-61299777 Msa0033680:CDS
GATGCAGTTTCTTCAATCAA+AGG 0.543892 1_1:-61299668 Msa0033680:CDS
CGAAGGCATGTCTATGGAGG+AGG 0.550678 1_1:+61299556 None:intergenic
AGCAATGCGACCTAGAGTGC+GGG 0.553479 1_1:-61301580 Msa0033680:CDS
TGAGGTGTGTGTATGTGTGT+GGG 0.555367 1_1:-61299003 Msa0033680:three_prime_UTR
TACCAGTGGAGCCACTGCAC+CGG 0.556175 1_1:+61299904 None:intergenic
AGTGCGGGCAAGAAGAGGAC+AGG 0.556988 1_1:-61301565 Msa0033680:CDS
AGAAGCGTCGGTTCCGTCGG+CGG 0.557440 1_1:+61302904 None:intergenic
ACGTGCTGTATGGATATGAA+TGG 0.559178 1_1:-61298769 Msa0033680:three_prime_UTR
ATGTAAGTGCTTTGATAGTG+GGG 0.560271 1_1:-61299204 Msa0033680:three_prime_UTR
AAAGCAAGTAGCTAAGCTCA+TGG 0.563532 1_1:-61299710 Msa0033680:CDS
TGGGAGAAGTGGTCTAATGA+TGG 0.569736 1_1:-61299739 Msa0033680:CDS
ATTGGGTGGAGCCGGTGCAG+TGG 0.571354 1_1:-61299915 Msa0033680:CDS
TGGACCAGGGTAAAGGAGGA+GGG 0.575554 1_1:-61302787 Msa0033680:CDS
AGCTTGGACCAGGGTAAAGG+AGG 0.576625 1_1:-61302791 Msa0033680:CDS
CCTAGAGTGCGGGCAAGAAG+AGG 0.582770 1_1:-61301570 Msa0033680:CDS
GCAGGAACTGTAGTAGGCAT+GGG 0.583605 1_1:+61301618 None:intergenic
TGTTCAAGGAAATCGTCGGC+GGG 0.587670 1_1:+61302953 None:intergenic
TATTAGTGATGTAACTCTAG+AGG 0.590895 1_1:-61299117 Msa0033680:three_prime_UTR
GAAACCCTCCTCCAGCGCCA+AGG 0.593872 1_1:+61302840 None:intergenic
GCACGTAAAAGTTGAGAGCA+TGG 0.596826 1_1:+61298786 None:intergenic
ACTCTAGGTCGCATTGCTGG+TGG 0.603281 1_1:+61301585 None:intergenic
TTGAGCATGAGTAGATTGGG+TGG 0.604660 1_1:-61299929 Msa0033680:CDS
CAGCATCATCGGAGAAGCGT+CGG 0.604818 1_1:+61302892 None:intergenic
AAAACCCTCCTCCTTTACCC+TGG 0.605221 1_1:+61302783 None:intergenic
TTACTGATTAAGAGCCACTT+GGG 0.607539 1_1:+61298845 None:intergenic
TTGTATCAACAAGATCCTCC+CGG 0.608383 1_1:+61302723 None:intergenic
GTAGTAGATGAGGCGCTCGA+TGG 0.608554 1_1:+61299505 None:intergenic
AAGAATAGCTGAAAGAATCA+GGG 0.613018 1_1:-61301374 Msa0033680:CDS
TCGTCGGCGGGTGTATCGGA+AGG 0.615492 1_1:+61302965 None:intergenic
TTGGGTTTGAGCTTGGACCA+GGG 0.616126 1_1:-61302800 Msa0033680:CDS
TGCCATGCTGGATGAAATTG+TGG 0.617577 1_1:-61300566 Msa0033680:CDS
ATCAATGACTAAAATTAAGG+AGG 0.621549 1_1:+61299448 None:intergenic
CAGCAATGCGACCTAGAGTG+CGG 0.622938 1_1:-61301581 Msa0033680:CDS
ATCCACAATTTCATCCAGCA+TGG 0.624370 1_1:+61300564 None:intergenic
AGGAACAGACAAATAACTTG+CGG 0.627300 1_1:+61299473 None:intergenic
ACCCTTTCAGCGATGCTGTG+GGG 0.628979 1_1:+61301534 None:intergenic
TGTCGAAGGCATGTCTATGG+AGG 0.632032 1_1:+61299553 None:intergenic
TTGTTCAAGGAAATCGTCGG+CGG 0.636210 1_1:+61302952 None:intergenic
ATGATGCTGCAGCTTAACTC+CGG 0.636220 1_1:-61302878 Msa0033680:CDS
ACTATACTGGAGTTGTCCGA+CGG 0.639351 1_1:+61299595 None:intergenic
TCAGACACAAGACACAAGAA+GGG 0.642723 1_1:+61303113 None:intergenic
TCATGTACCTTGTTGACACT+AGG 0.645489 1_1:+61301334 None:intergenic
GGTCCCAGAAGTAGTAGATG+AGG 0.654289 1_1:+61299495 None:intergenic
GACCTTGTAAAAGGTTAGGG+TGG 0.659952 1_1:-61299155 Msa0033680:three_prime_UTR
GAGTGGGAAGCGTTTCCGGG+AGG 0.662373 1_1:-61302738 Msa0033680:CDS
AATATACCAATCGCAACCGT+CGG 0.663547 1_1:-61299611 Msa0033680:CDS
AATGGGATGTCAGTTACCAG+TGG 0.664418 1_1:+61299890 None:intergenic
ACTTGTTCCTAGTGTCAACA+AGG 0.667852 1_1:-61301341 Msa0033680:intron
CATCCCATTATCGTCAGTCG+AGG 0.668468 1_1:-61299876 Msa0033680:intron
CAGACACAAGACACAAGAAG+GGG 0.669068 1_1:+61303114 None:intergenic
GATGTGCCAAGCATTGTCGA+AGG 0.672703 1_1:+61299539 None:intergenic
GCTCATGGAAGAAAATGTTG+GGG 0.678396 1_1:-61299695 Msa0033680:CDS
AATTTGTTCAAGGAAATCGT+CGG 0.683744 1_1:+61302949 None:intergenic
ATGCTTGGCACATCATCCAG+TGG 0.687924 1_1:-61299530 Msa0033680:three_prime_UTR
GGAACTTGATTGTGCCCAAG+TGG 0.694880 1_1:-61298859 Msa0033680:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATATATATATTTTTTTT+TGG - chr1_1:61301162-61301181 Msa0033680:intron 0.0%
!!! ATATATATATATTTTTTTTT+GGG - chr1_1:61301163-61301182 Msa0033680:intron 0.0%
!!! AAACTAATTTTGTTTAATTT+TGG - chr1_1:61299243-61299262 Msa0033680:three_prime_UTR 10.0%
!!! ACGATAAATTTTATTTTTAA+GGG + chr1_1:61299621-61299640 None:intergenic 10.0%
!!! TACGATAAATTTTATTTTTA+AGG + chr1_1:61299622-61299641 None:intergenic 10.0%
!! TGAATAATGATTATATATTA+TGG - chr1_1:61299739-61299758 Msa0033680:CDS 10.0%
!!! TTTTATTTTTATTGCAATAT+AGG - chr1_1:61300549-61300568 Msa0033680:CDS 10.0%
!!! AAATTTTATAATATATTGTC+TGG + chr1_1:61302045-61302064 None:intergenic 10.0%
!!! TAATTTTGTTTAATTTTGGT+GGG - chr1_1:61299247-61299266 Msa0033680:three_prime_UTR 15.0%
!! TAATGATTATATATTATGGA+AGG - chr1_1:61299743-61299762 Msa0033680:CDS 15.0%
!! TAAGATATTAGAAAATACAT+GGG + chr1_1:61300038-61300057 None:intergenic 15.0%
!! TTAAGATATTAGAAAATACA+TGG + chr1_1:61300039-61300058 None:intergenic 15.0%
!!! TTTGTAATCATTATTTTGTT+GGG - chr1_1:61301469-61301488 Msa0033680:intron 15.0%
!!! TATAAAATTTTGTATTGTTC+AGG - chr1_1:61302055-61302074 Msa0033680:intron 15.0%
!!! TTTTCCTTTTTGTATAAAAA+AGG - chr1_1:61302605-61302624 Msa0033680:intron 15.0%
!! TGTTTATTCAAAAAAGTAAT+TGG - chr1_1:61302879-61302898 Msa0033680:CDS 15.0%
!!! TTTTCTTTTCTTTTCAGTTA+TGG - chr1_1:61298856-61298875 Msa0033680:three_prime_UTR 20.0%
!! TTATGTTAAGTTACATTCTT+AGG + chr1_1:61299157-61299176 None:intergenic 20.0%
!!! CTAATTTTGTTTAATTTTGG+TGG - chr1_1:61299246-61299265 Msa0033680:three_prime_UTR 20.0%
!! TTATTCATTCATCTTTAAGT+TGG + chr1_1:61299726-61299745 None:intergenic 20.0%
!!! TTTTCTGCTATATTTACATT+CGG + chr1_1:61299835-61299854 None:intergenic 20.0%
!! TGAATGATTAACATTTAATG+AGG - chr1_1:61300366-61300385 Msa0033680:intron 20.0%
!!! ATTGGTATTTTATGTAATCT+TGG - chr1_1:61300759-61300778 Msa0033680:intron 20.0%
!!! AACTGATTTTGGTATTAAAT+TGG + chr1_1:61300928-61300947 None:intergenic 20.0%
!!! ATGTTTATTACAATTAGTCT+GGG - chr1_1:61301028-61301047 Msa0033680:intron 20.0%
!!! ATATATTTTTTTTTGGGACT+TGG - chr1_1:61301169-61301188 Msa0033680:intron 20.0%
!!! ATTTGATTTCTATCTTTGTT+AGG - chr1_1:61301373-61301392 Msa0033680:CDS 20.0%
!! TAATGATTACAAAGAGTAAA+AGG + chr1_1:61301462-61301481 None:intergenic 20.0%
!!! CTTTGTAATCATTATTTTGT+TGG - chr1_1:61301468-61301487 Msa0033680:intron 20.0%
!! AATAAAATCAAATGGCTAAT+GGG + chr1_1:61301540-61301559 None:intergenic 20.0%
!! AATTGTATCTTAATATTCAC+CGG + chr1_1:61301571-61301590 None:intergenic 20.0%
!!! TTTTGTTGAAAACTAGATAT+TGG + chr1_1:61301726-61301745 None:intergenic 20.0%
!! CAAATCAATGACTAAAATTA+AGG + chr1_1:61302410-61302429 None:intergenic 20.0%
!! CAAAAAAAAAGAAAAGACTA+TGG + chr1_1:61302459-61302478 None:intergenic 20.0%
!!! TAGTCTTTTCTTTTTTTTTG+CGG - chr1_1:61302459-61302478 Msa0033680:intron 20.0%
!! TATGGAAAATTTCTTGTAAA+GGG - chr1_1:61302552-61302571 Msa0033680:intron 20.0%
!! CATCACTAATAAATACTATA+TGG + chr1_1:61302726-61302745 None:intergenic 20.0%
!!! ATCATCTGTTTAAGTTGAAT+TGG - chr1_1:61299274-61299293 Msa0033680:three_prime_UTR 25.0%
! ATAGTGTATTACTATTTACC+TGG - chr1_1:61299315-61299334 Msa0033680:three_prime_UTR 25.0%
! TAGTGTATTACTATTTACCT+GGG - chr1_1:61299316-61299335 Msa0033680:three_prime_UTR 25.0%
! GAAAACATTTCAGACTTTAA+TGG - chr1_1:61299451-61299470 Msa0033680:three_prime_UTR 25.0%
!!! TGAATTGTTATTGGTTTTTG+TGG - chr1_1:61299645-61299664 Msa0033680:CDS 25.0%
!!! GAATTGTTATTGGTTTTTGT+GGG - chr1_1:61299646-61299665 Msa0033680:CDS 25.0%
! ATTATATATTATGGAAGGTG+TGG - chr1_1:61299748-61299767 Msa0033680:CDS 25.0%
!! TTATATATTATGGAAGGTGT+GGG - chr1_1:61299749-61299768 Msa0033680:CDS 25.0%
!!! AATATAGCAGAAAAAGTACT+TGG - chr1_1:61299841-61299860 Msa0033680:intron 25.0%
! TAAGACAAAAAAATGCTACT+TGG + chr1_1:61300177-61300196 None:intergenic 25.0%
!!! ACACAATCTAAAACTGATTT+TGG + chr1_1:61300939-61300958 None:intergenic 25.0%
! CATGTTTATTACAATTAGTC+TGG - chr1_1:61301027-61301046 Msa0033680:intron 25.0%
!! TCATCTTTTAACCTTTTGAT+AGG + chr1_1:61301061-61301080 None:intergenic 25.0%
! ATGGAAATATTATACAGAAG+AGG + chr1_1:61301221-61301240 None:intergenic 25.0%
!!! ATACACAGTTTTAGATACAA+TGG + chr1_1:61301240-61301259 None:intergenic 25.0%
! TGGATTATGTCAAATTCTTA+AGG - chr1_1:61301306-61301325 Msa0033680:intron 25.0%
! CTTTGTTAGGTCTATAATTA+AGG - chr1_1:61301386-61301405 Msa0033680:CDS 25.0%
! GAATAAAATCAAATGGCTAA+TGG + chr1_1:61301541-61301560 None:intergenic 25.0%
! TCATCGTGAATAAAATCAAA+TGG + chr1_1:61301548-61301567 None:intergenic 25.0%
! CATTGAAAATTAGACCTATT+TGG + chr1_1:61301689-61301708 None:intergenic 25.0%
! GTTGCTGACAAATTTAAATT+TGG + chr1_1:61301845-61301864 None:intergenic 25.0%
! AATTATTCAAATCATGTCGT+TGG - chr1_1:61302000-61302019 Msa0033680:intron 25.0%
! ATCAATGACTAAAATTAAGG+AGG + chr1_1:61302407-61302426 None:intergenic 25.0%
! CTATGGAAAATTTCTTGTAA+AGG - chr1_1:61302551-61302570 Msa0033680:intron 25.0%
!!! CCATCCTTTTTTATACAAAA+AGG + chr1_1:61302612-61302631 None:intergenic 25.0%
!! CCTTTTTGTATAAAAAAGGA+TGG - chr1_1:61302609-61302628 Msa0033680:intron 25.0%
!! TTTTGTATAAAAAAGGATGG+AGG - chr1_1:61302612-61302631 Msa0033680:intron 25.0%
!!! TGATGCTTTTTGTTTATTTG+AGG - chr1_1:61302831-61302850 Msa0033680:CDS 25.0%
!! AATTGGACCTCTTTTTATAA+TGG - chr1_1:61302896-61302915 Msa0033680:CDS 25.0%
!! ATTGGACCTCTTTTTATAAT+GGG - chr1_1:61302897-61302916 Msa0033680:CDS 25.0%
! ATAGTAGCTTAGTATGAATT+GGG + chr1_1:61302961-61302980 None:intergenic 25.0%
! TATAGTAGCTTAGTATGAAT+TGG + chr1_1:61302962-61302981 None:intergenic 25.0%
! AAGCTACTATAATCAAGTAA+TGG - chr1_1:61302971-61302990 Msa0033680:CDS 25.0%
! AGCTACTATAATCAAGTAAT+GGG - chr1_1:61302972-61302991 Msa0033680:CDS 25.0%
! TAAAATTTGTCAAAGTGATG+TGG - chr1_1:61303133-61303152 Msa0033680:five_prime_UTR 25.0%
! AATTTGTTCAAGGAAATCGT+CGG + chr1_1:61298906-61298925 None:intergenic 30.0%
GATTTCCTTGAACAAATTCT+CGG - chr1_1:61298908-61298927 Msa0033680:three_prime_UTR 30.0%
!! TGTTTAAGTTGAATTGGACT+TGG - chr1_1:61299280-61299299 Msa0033680:three_prime_UTR 30.0%
! AATAATTATGCCAGCTTTGT+TGG - chr1_1:61299397-61299416 Msa0033680:three_prime_UTR 30.0%
CTGATACTTTATCTCAGAAA+TGG - chr1_1:61299516-61299535 Msa0033680:three_prime_UTR 30.0%
!! AAATAACTTGTTACTTCACC+AGG + chr1_1:61299560-61299579 None:intergenic 30.0%
TGGTGAAGTAACAAGTTATT+TGG - chr1_1:61299559-61299578 Msa0033680:exon 30.0%
GGTGAAGTAACAAGTTATTT+GGG - chr1_1:61299560-61299579 Msa0033680:exon 30.0%
ATCGTAGCATGAATTGTTAT+TGG - chr1_1:61299636-61299655 Msa0033680:CDS 30.0%
TAAAGATCATACACCAAGTT+AGG + chr1_1:61299690-61299709 None:intergenic 30.0%
GAACTAGCAATAAGTAAGAA+TGG + chr1_1:61299905-61299924 None:intergenic 30.0%
GAAAACATTTCAGACTTTGA+TGG + chr1_1:61299935-61299954 None:intergenic 30.0%
AAGGCAGAAAGGTAAATATA+AGG + chr1_1:61300127-61300146 None:intergenic 30.0%
TATATTTACCTTTCTGCCTT+TGG - chr1_1:61300127-61300146 Msa0033680:intron 30.0%
ATATTTACCTTTCTGCCTTT+GGG - chr1_1:61300128-61300147 Msa0033680:intron 30.0%
! AAGTTTTTGCAGACTTTTCA+TGG - chr1_1:61300207-61300226 Msa0033680:intron 30.0%
! AGTTTTTGCAGACTTTTCAT+GGG - chr1_1:61300208-61300227 Msa0033680:intron 30.0%
AAATCACATTGCTAATTCCT+TGG - chr1_1:61300392-61300411 Msa0033680:intron 30.0%
AAAGAATAGCTGAAAGAATC+AGG - chr1_1:61300477-61300496 Msa0033680:intron 30.0%
AAGAATAGCTGAAAGAATCA+GGG - chr1_1:61300478-61300497 Msa0033680:intron 30.0%
TAAGATACGGAGACAAAATT+TGG - chr1_1:61300647-61300666 Msa0033680:intron 30.0%
!!! TTTCAGCACTGTTTTTGTTT+CGG + chr1_1:61300693-61300712 None:intergenic 30.0%
! AACAAAAACAGTGCTGAAAT+TGG - chr1_1:61300694-61300713 Msa0033680:intron 30.0%
AATTAAATCATCCTTCGAGT+GGG + chr1_1:61300860-61300879 None:intergenic 30.0%
! TTGTGTTTGAGTTTGGAAAA+TGG - chr1_1:61300888-61300907 Msa0033680:intron 30.0%
AAATTTCATGTTCGCCAAAT+CGG + chr1_1:61301106-61301125 None:intergenic 30.0%
!! TTCTGAAGTATAAAGTCTTC+TGG - chr1_1:61301132-61301151 Msa0033680:intron 30.0%
GAAATCAAATGTGAAATCCA+TGG + chr1_1:61301363-61301382 None:intergenic 30.0%
!! TAATTAAGGTTAGCTTGAAC+TGG - chr1_1:61301400-61301419 Msa0033680:intron 30.0%
!! AGTAAAAGGCATTGGTAAAT+AGG + chr1_1:61301448-61301467 None:intergenic 30.0%
! TTACAAAGAGTAAAAGGCAT+TGG + chr1_1:61301456-61301475 None:intergenic 30.0%
!! TTATTTTGTTGGGATTCAAC+TGG - chr1_1:61301479-61301498 Msa0033680:intron 30.0%
! TTGATTTTATTCACGATGAC+CGG - chr1_1:61301549-61301568 Msa0033680:CDS 30.0%
TCGGATAGTTGGATATTATT+GGG + chr1_1:61301634-61301653 None:intergenic 30.0%
TTCGGATAGTTGGATATTAT+TGG + chr1_1:61301635-61301654 None:intergenic 30.0%
AATAATATCCAACTATCCGA+AGG - chr1_1:61301634-61301653 Msa0033680:CDS 30.0%
ATAATATCCAACTATCCGAA+GGG - chr1_1:61301635-61301654 Msa0033680:CDS 30.0%
TCAATTGTCTTTCACCAAAT+AGG - chr1_1:61301672-61301691 Msa0033680:intron 30.0%
! TGTTCTTTTGTCTATCTTTC+AGG - chr1_1:61301898-61301917 Msa0033680:intron 30.0%
! TTTTGTATTGTTCAGGAAGA+AGG - chr1_1:61302062-61302081 Msa0033680:intron 30.0%
TGACTAAAATTAAGGAGGTT+AGG + chr1_1:61302402-61302421 None:intergenic 30.0%
CATAAAGTTGCATTCAAAGT+AGG - chr1_1:61302430-61302449 Msa0033680:intron 30.0%
! TATCAGCTTTTGTCAATACA+GGG - chr1_1:61302485-61302504 Msa0033680:intron 30.0%
! AATTTTCCATAGACAGGATA+GGG + chr1_1:61302543-61302562 None:intergenic 30.0%
! AAATTTTCCATAGACAGGAT+AGG + chr1_1:61302544-61302563 None:intergenic 30.0%
! ACAAGAAATTTTCCATAGAC+AGG + chr1_1:61302549-61302568 None:intergenic 30.0%
!!! GGGTTTTTAGTTTTTGTAGT+GGG - chr1_1:61302668-61302687 Msa0033680:intron 30.0%
TATTAGTGATGTAACTCTAG+AGG - chr1_1:61302735-61302754 Msa0033680:CDS 30.0%
TGTTGAAGTGCAATAGATAA+TGG - chr1_1:61302766-61302785 Msa0033680:CDS 30.0%
!! AAAGCATCATCATTTTCTTC+TGG + chr1_1:61302820-61302839 None:intergenic 30.0%
! TCTGAGTGACTAGTTGAAAA+TGG + chr1_1:61298774-61298793 None:intergenic 35.0%
CTCAAACCCAAATGATAAAC+CGG + chr1_1:61299043-61299062 None:intergenic 35.0%
! TTATCATTTGGGTTTGAGCT+TGG - chr1_1:61299045-61299064 Msa0033680:three_prime_UTR 35.0%
!! AGTTGAATTGGACTTGGTTT+TGG - chr1_1:61299286-61299305 Msa0033680:three_prime_UTR 35.0%
AAACTAGCAGCAAGTAAGAA+TGG - chr1_1:61299481-61299500 Msa0033680:three_prime_UTR 35.0%
!!! TTGTTATTGGTTTTTGTGGG+TGG - chr1_1:61299649-61299668 Msa0033680:CDS 35.0%
! TTTTTGTGGGTGGTTCATTT+TGG - chr1_1:61299659-61299678 Msa0033680:CDS 35.0%
TACTGTTGGCAATGTCTAAA+CGG + chr1_1:61300000-61300019 None:intergenic 35.0%
CATTAGCATTAAGCATACCA+AGG + chr1_1:61300412-61300431 None:intergenic 35.0%
CTTCAGAGTAAACACGAAAA+GGG + chr1_1:61300622-61300641 None:intergenic 35.0%
ACTTCAGAGTAAACACGAAA+AGG + chr1_1:61300623-61300642 None:intergenic 35.0%
!! CTCTGAAGTGAGATAAGATA+CGG - chr1_1:61300634-61300653 Msa0033680:intron 35.0%
!!! TTCAGCACTGTTTTTGTTTC+GGG + chr1_1:61300692-61300711 None:intergenic 35.0%
AGTATTGTTCAATGCGTACT+TGG - chr1_1:61300784-61300803 Msa0033680:intron 35.0%
GAATTAAATCATCCTTCGAG+TGG + chr1_1:61300861-61300880 None:intergenic 35.0%
! TAACTCGTTGTGTTTGAGTT+TGG - chr1_1:61300881-61300900 Msa0033680:intron 35.0%
! ACCTCTCATGTTCTGTTTTA+CGG - chr1_1:61300994-61301013 Msa0033680:intron 35.0%
TGGGAAACAATCCTATCAAA+AGG - chr1_1:61301047-61301066 Msa0033680:intron 35.0%
!!! TTTTTTTTGGGACTTGGTTG+TGG - chr1_1:61301175-61301194 Msa0033680:intron 35.0%
ATTCTTAAGGCTTCAAGTGA+AGG - chr1_1:61301319-61301338 Msa0033680:intron 35.0%
TGGTTAAAGTAGCAACAACA+TGG + chr1_1:61301611-61301630 None:intergenic 35.0%
GATAGTTGGATATTATTGGG+TGG + chr1_1:61301631-61301650 None:intergenic 35.0%
TGATTTCTCTAGACACATGT+GGG - chr1_1:61301762-61301781 Msa0033680:intron 35.0%
TGTACATGAAAGTGAAAGCA+AGG - chr1_1:61301806-61301825 Msa0033680:intron 35.0%
!! GTTTTGAGCATGAGTAGATT+GGG - chr1_1:61301920-61301939 Msa0033680:intron 35.0%
AAGCTCATGGAAGAAAATGT+TGG - chr1_1:61302155-61302174 Msa0033680:intron 35.0%
AGCTCATGGAAGAAAATGTT+GGG - chr1_1:61302156-61302175 Msa0033680:intron 35.0%
GATGCAGTTTCTTCAATCAA+AGG - chr1_1:61302184-61302203 Msa0033680:intron 35.0%
AGTTTCAGGCTTAACTATAC+TGG + chr1_1:61302273-61302292 None:intergenic 35.0%
AGGAACAGACAAATAACTTG+CGG + chr1_1:61302382-61302401 None:intergenic 35.0%
! GTATCAGCTTTTGTCAATAC+AGG - chr1_1:61302484-61302503 Msa0033680:intron 35.0%
TAAAAAAGGATGGAGGTTAG+TGG - chr1_1:61302619-61302638 Msa0033680:intron 35.0%
TGATGTAAGTGCTTTGATAG+TGG - chr1_1:61302646-61302665 Msa0033680:intron 35.0%
! GATGTAAGTGCTTTGATAGT+GGG - chr1_1:61302647-61302666 Msa0033680:intron 35.0%
!! ATGTAAGTGCTTTGATAGTG+GGG - chr1_1:61302648-61302667 Msa0033680:intron 35.0%
!!! GGGGTTTTTAGTTTTTGTAG+TGG - chr1_1:61302667-61302686 Msa0033680:intron 35.0%
!! TTAGTTTTTGTAGTGGGATG+TGG - chr1_1:61302674-61302693 Msa0033680:intron 35.0%
!! TAGTTTTTGTAGTGGGATGT+GGG - chr1_1:61302675-61302694 Msa0033680:intron 35.0%
!! AATGGTTGCTTTAAGAATGC+TGG - chr1_1:61302784-61302803 Msa0033680:CDS 35.0%
TCTCCTCCCATTATAAAAAG+AGG + chr1_1:61302906-61302925 None:intergenic 35.0%
!! TTTTATAATGGGAGGAGAGA+TGG - chr1_1:61302908-61302927 Msa0033680:CDS 35.0%
AGCTTAGTATGAATTGGGTT+AGG + chr1_1:61302956-61302975 None:intergenic 35.0%
! TTACTGATTAAGAGCCACTT+GGG + chr1_1:61303010-61303029 None:intergenic 35.0%
! CTTGTTTGTTGACTATTGGA+TGG - chr1_1:61303156-61303175 Msa0033680:five_prime_UTR 35.0%
! TTGTTGACTATTGGATGGAT+TGG - chr1_1:61303161-61303180 Msa0033680:five_prime_UTR 35.0%
! GTTTCGCTTTATTGGATGCT+TGG + chr1_1:61298719-61298738 None:intergenic 40.0%
AAGAAGGGGTTTCGCTTTAT+TGG + chr1_1:61298727-61298746 None:intergenic 40.0%
TCAGACACAAGACACAAGAA+GGG + chr1_1:61298742-61298761 None:intergenic 40.0%
TTCAGACACAAGACACAAGA+AGG + chr1_1:61298743-61298762 None:intergenic 40.0%
! GAAGACCGAGAATTTGTTCA+AGG + chr1_1:61298916-61298935 None:intergenic 40.0%
!! TCATGCACCGGTTTATCATT+TGG - chr1_1:61299033-61299052 Msa0033680:three_prime_UTR 40.0%
!! CATGCACCGGTTTATCATTT+GGG - chr1_1:61299034-61299053 Msa0033680:three_prime_UTR 40.0%
TTGTATCAACAAGATCCTCC+CGG + chr1_1:61299132-61299151 None:intergenic 40.0%
TTACTATTTACCTGGGTCTC+AGG - chr1_1:61299323-61299342 Msa0033680:three_prime_UTR 40.0%
!! AATTATGCCAGCTTTGTTGG+TGG - chr1_1:61299400-61299419 Msa0033680:three_prime_UTR 40.0%
! TATTATGGAAGGTGTGGGAT+TGG - chr1_1:61299754-61299773 Msa0033680:CDS 40.0%
AAGCTACTACCAACTGAGAA+TGG - chr1_1:61299974-61299993 Msa0033680:intron 40.0%
TAGACATTGCCAACAGTACT+TGG - chr1_1:61300002-61300021 Msa0033680:intron 40.0%
! AAAACGACTCCAAGTACTGT+TGG + chr1_1:61300014-61300033 None:intergenic 40.0%
!!! TCTGCGCAACTGTTTTTGAA+CGG + chr1_1:61300456-61300475 None:intergenic 40.0%
ACTTGTTCCTAGTGTCAACA+AGG - chr1_1:61300511-61300530 Msa0033680:intron 40.0%
TCATGTACCTTGTTGACACT+AGG + chr1_1:61300521-61300540 None:intergenic 40.0%
TCTATAGAACTTGCGCAATC+AGG - chr1_1:61300587-61300606 Msa0033680:intron 40.0%
! TGCTGAAATTGGAGCTTTGT+GGG - chr1_1:61300705-61300724 Msa0033680:intron 40.0%
!! GACTGATTTTCCTTGTTGCT+AGG - chr1_1:61300735-61300754 Msa0033680:intron 40.0%
! TTTTCCTTGTTGCTAGGCAT+TGG - chr1_1:61300741-61300760 Msa0033680:intron 40.0%
AATACCAATGCCTAGCAACA+AGG + chr1_1:61300748-61300767 None:intergenic 40.0%
! CTATAGTTCTACACAGACAC+TGG - chr1_1:61300822-61300841 Msa0033680:intron 40.0%
! ACATGAGAGGTATGCTTATC+TGG + chr1_1:61300985-61301004 None:intergenic 40.0%
ACCGTAAAACAGAACATGAG+AGG + chr1_1:61300998-61301017 None:intergenic 40.0%
TCTGCATATAGTCTCCGATT+TGG - chr1_1:61301089-61301108 Msa0033680:intron 40.0%
ATCCACAATTTCATCCAGCA+TGG + chr1_1:61301291-61301310 None:intergenic 40.0%
CATGTGTCTAGAGAAATCAC+TGG + chr1_1:61301761-61301780 None:intergenic 40.0%
GTGATTTCTCTAGACACATG+TGG - chr1_1:61301761-61301780 Msa0033680:intron 40.0%
!!! GGTTTTGAGCATGAGTAGAT+TGG - chr1_1:61301919-61301938 Msa0033680:intron 40.0%
TTACCTCGACTGACGATAAT+GGG + chr1_1:61301982-61302001 None:intergenic 40.0%
ATTACCTCGACTGACGATAA+TGG + chr1_1:61301983-61302002 None:intergenic 40.0%
!! GAGCTTAGCTACTTGCTTTT+CGG + chr1_1:61302141-61302160 None:intergenic 40.0%
AAAGCAAGTAGCTAAGCTCA+TGG - chr1_1:61302142-61302161 Msa0033680:intron 40.0%
GCTCATGGAAGAAAATGTTG+GGG - chr1_1:61302157-61302176 Msa0033680:intron 40.0%
AATATACCAATCGCAACCGT+CGG - chr1_1:61302241-61302260 Msa0033680:intron 40.0%
TATGGAGGAGGAATAGTTTC+AGG + chr1_1:61302287-61302306 None:intergenic 40.0%
! GGAACAGACAAATAACTTGC+GGG + chr1_1:61302381-61302400 None:intergenic 40.0%
!!! AGGGTCTGCTTGCATTTTTT+AGG + chr1_1:61302524-61302543 None:intergenic 40.0%
TGGGACCTTGTAAAAGGTTA+GGG - chr1_1:61302694-61302713 Msa0033680:intron 40.0%
! TACCACCCTAACCTTTTACA+AGG + chr1_1:61302702-61302721 None:intergenic 40.0%
!! GGACCTCTTTTTATAATGGG+AGG - chr1_1:61302900-61302919 Msa0033680:CDS 40.0%
! CTTACTGATTAAGAGCCACT+TGG + chr1_1:61303011-61303030 None:intergenic 40.0%
TCACTTGAGAGTTGAGAATC+AGG + chr1_1:61303040-61303059 None:intergenic 40.0%
! CTCAACTTTTACGTGCTGTA+TGG - chr1_1:61303073-61303092 Msa0033680:five_prime_UTR 40.0%
ACGTGCTGTATGGATATGAA+TGG - chr1_1:61303083-61303102 Msa0033680:five_prime_UTR 40.0%
!! GTGGCTTGTTTGTTGACTAT+TGG - chr1_1:61303152-61303171 Msa0033680:five_prime_UTR 40.0%
CAGACACAAGACACAAGAAG+GGG + chr1_1:61298741-61298760 None:intergenic 45.0%
TTGTTCAAGGAAATCGTCGG+CGG + chr1_1:61298903-61298922 None:intergenic 45.0%
GAGTTAAGCTGCAGCATCAT+CGG + chr1_1:61298974-61298993 None:intergenic 45.0%
ATGATGCTGCAGCTTAACTC+CGG - chr1_1:61298974-61298993 Msa0033680:three_prime_UTR 45.0%
TTGAAGCCTGATGAAGCTTC+CGG - chr1_1:61299091-61299110 Msa0033680:three_prime_UTR 45.0%
GTCTCAGGTTTGATTCTCCT+CGG - chr1_1:61299338-61299357 Msa0033680:three_prime_UTR 45.0%
!! ATTCTCCTCGGTGCCAAATT+GGG - chr1_1:61299350-61299369 Msa0033680:three_prime_UTR 45.0%
CTAAATTCGCCCACCCAATT+TGG + chr1_1:61299366-61299385 None:intergenic 45.0%
TAAGCTACCACCAACAAAGC+TGG + chr1_1:61299410-61299429 None:intergenic 45.0%
CATTCTTCAATTCAGCTGCC+TGG - chr1_1:61299539-61299558 Msa0033680:three_prime_UTR 45.0%
AGGGTCATGCTATGACAAGT+TGG + chr1_1:61299602-61299621 None:intergenic 45.0%
!!! CATTTTGGTAGCGCCTAACT+TGG - chr1_1:61299674-61299693 Msa0033680:CDS 45.0%
TCTAAACGGCCATTCTCAGT+TGG + chr1_1:61299986-61300005 None:intergenic 45.0%
TTTACCTTTCTGCCTTTGGG+AGG - chr1_1:61300131-61300150 Msa0033680:intron 45.0%
AGAACTTGCGCAATCAGGTA+AGG - chr1_1:61300592-61300611 Msa0033680:intron 45.0%
GTGCTGAAATTGGAGCTTTG+TGG - chr1_1:61300704-61300723 Msa0033680:intron 45.0%
! GCTGAAATTGGAGCTTTGTG+GGG - chr1_1:61300706-61300725 Msa0033680:intron 45.0%
! TGAGAGGTATGCTTATCTGG+AGG + chr1_1:61300982-61301001 None:intergenic 45.0%
GTGGTCTGCTGTATTTCTCT+TGG - chr1_1:61301194-61301213 Msa0033680:intron 45.0%
TGCCATGCTGGATGAAATTG+TGG - chr1_1:61301286-61301305 Msa0033680:intron 45.0%
! TAGTGCTTTTGTGAGCTCCA+TGG - chr1_1:61301343-61301362 Msa0033680:CDS 45.0%
!! CTGAGATGCCACTTTGGTAT+GGG - chr1_1:61301513-61301532 Msa0033680:intron 45.0%
! TAATGGGTCCCATACCAAAG+TGG + chr1_1:61301524-61301543 None:intergenic 45.0%
GTGAAAGCAAGGCTCTTCAT+TGG - chr1_1:61301817-61301836 Msa0033680:intron 45.0%
TTGAGCATGAGTAGATTGGG+TGG - chr1_1:61301923-61301942 Msa0033680:intron 45.0%
AATGGGATGTCAGTTACCAG+TGG + chr1_1:61301965-61301984 None:intergenic 45.0%
AGGAAGAAGGAAGTGAGAGT+GGG - chr1_1:61302075-61302094 Msa0033680:intron 45.0%
TGGGAGAAGTGGTCTAATGA+TGG - chr1_1:61302113-61302132 Msa0033680:intron 45.0%
ATTGCAGATGCCAGTGAGAT+GGG + chr1_1:61302224-61302243 None:intergenic 45.0%
TATTGCAGATGCCAGTGAGA+TGG + chr1_1:61302225-61302244 None:intergenic 45.0%
ACTATACTGGAGTTGTCCGA+CGG + chr1_1:61302260-61302279 None:intergenic 45.0%
! CATTGTCGAAGGCATGTCTA+TGG + chr1_1:61302305-61302324 None:intergenic 45.0%
GTGGGACCTTGTAAAAGGTT+AGG - chr1_1:61302693-61302712 Msa0033680:intron 45.0%
GACCTTGTAAAAGGTTAGGG+TGG - chr1_1:61302697-61302716 Msa0033680:intron 45.0%
TTGAGGTGTGTGTATGTGTG+TGG - chr1_1:61302848-61302867 Msa0033680:CDS 45.0%
TGAGGTGTGTGTATGTGTGT+GGG - chr1_1:61302849-61302868 Msa0033680:CDS 45.0%
GCACGTAAAAGTTGAGAGCA+TGG + chr1_1:61303069-61303088 None:intergenic 45.0%
TGTTCAAGGAAATCGTCGGC+GGG + chr1_1:61298902-61298921 None:intergenic 50.0%
! TTTGGGTTTGAGCTTGGACC+AGG - chr1_1:61299051-61299070 Msa0033680:three_prime_UTR 50.0%
TTGGGTTTGAGCTTGGACCA+GGG - chr1_1:61299052-61299071 Msa0033680:three_prime_UTR 50.0%
TTGAGCTTGGACCAGGGTAA+AGG - chr1_1:61299058-61299077 Msa0033680:three_prime_UTR 50.0%
AAAACCCTCCTCCTTTACCC+TGG + chr1_1:61299072-61299091 None:intergenic 50.0%
TGAAGCCTGATGAAGCTTCC+GGG - chr1_1:61299092-61299111 Msa0033680:three_prime_UTR 50.0%
GAGAATCAAACCTGAGACCC+AGG + chr1_1:61299336-61299355 None:intergenic 50.0%
!! GATTCTCCTCGGTGCCAAAT+TGG - chr1_1:61299349-61299368 Msa0033680:three_prime_UTR 50.0%
!! AGGTCCTGGAGAAGTGTTGT+TGG - chr1_1:61300151-61300170 Msa0033680:intron 50.0%
TTGGCCAACAACACTTCTCC+AGG + chr1_1:61300158-61300177 None:intergenic 50.0%
GCAGGAACTGTAGTAGGCAT+GGG + chr1_1:61300237-61300256 None:intergenic 50.0%
AGCAGGAACTGTAGTAGGCA+TGG + chr1_1:61300238-61300257 None:intergenic 50.0%
CTTGCGCAATCAGGTAAGGA+TGG - chr1_1:61300596-61300615 Msa0033680:intron 50.0%
CATGTCTGTTTCCCACTCGA+AGG - chr1_1:61300846-61300865 Msa0033680:intron 50.0%
CCATACCAAAGTGGCATCTC+AGG + chr1_1:61301515-61301534 None:intergenic 50.0%
!! CCTGAGATGCCACTTTGGTA+TGG - chr1_1:61301512-61301531 Msa0033680:intron 50.0%
GTTGAAGCCCTTCGGATAGT+TGG + chr1_1:61301645-61301664 None:intergenic 50.0%
TATCCGAAGGGCTTCAACTG+TGG - chr1_1:61301647-61301666 Msa0033680:intron 50.0%
AGTCCACAGTTGAAGCCCTT+CGG + chr1_1:61301653-61301672 None:intergenic 50.0%
ATGAGTAGATTGGGTGGAGC+CGG - chr1_1:61301929-61301948 Msa0033680:intron 50.0%
CATCCCATTATCGTCAGTCG+AGG - chr1_1:61301976-61301995 Msa0033680:intron 50.0%
CAGGAAGAAGGAAGTGAGAG+TGG - chr1_1:61302074-61302093 Msa0033680:intron 50.0%
TGGGAGAAACCAACCAGCTT+GGG - chr1_1:61302094-61302113 Msa0033680:intron 50.0%
TTAGACCACTTCTCCCAAGC+TGG + chr1_1:61302110-61302129 None:intergenic 50.0%
CTGCATAATGCCCATCTCAC+TGG - chr1_1:61302211-61302230 Msa0033680:intron 50.0%
! TGTCGAAGGCATGTCTATGG+AGG + chr1_1:61302302-61302321 None:intergenic 50.0%
GACATGCCTTCGACAATGCT+TGG - chr1_1:61302307-61302326 Msa0033680:intron 50.0%
! GATGTGCCAAGCATTGTCGA+AGG + chr1_1:61302316-61302335 None:intergenic 50.0%
ATGCTTGGCACATCATCCAG+TGG - chr1_1:61302322-61302341 Msa0033680:intron 50.0%
! TAGTAGATGAGGCGCTCGAT+GGG + chr1_1:61302349-61302368 None:intergenic 50.0%
AGCGCCTCATCTACTACTTC+TGG - chr1_1:61302353-61302372 Msa0033680:intron 50.0%
GCGCCTCATCTACTACTTCT+GGG - chr1_1:61302354-61302373 Msa0033680:intron 50.0%
GGTCCCAGAAGTAGTAGATG+AGG + chr1_1:61302360-61302379 None:intergenic 50.0%
AGCAGACCCTATCCTGTCTA+TGG - chr1_1:61302534-61302553 Msa0033680:intron 50.0%
GGGATGTGGGACCTTGTAAA+AGG - chr1_1:61302688-61302707 Msa0033680:intron 50.0%
GGAACTTGATTGTGCCCAAG+TGG - chr1_1:61302993-61303012 Msa0033680:exon 50.0%
GAAATCGTCGGCGGGTGTAT+CGG + chr1_1:61298894-61298913 None:intergenic 55.0%
! CAGCATCATCGGAGAAGCGT+CGG + chr1_1:61298963-61298982 None:intergenic 55.0%
TGGAGGAGGGTTTCATGCAC+CGG - chr1_1:61299021-61299040 Msa0033680:three_prime_UTR 55.0%
AGCTTGGACCAGGGTAAAGG+AGG - chr1_1:61299061-61299080 Msa0033680:three_prime_UTR 55.0%
TTGGACCAGGGTAAAGGAGG+AGG - chr1_1:61299064-61299083 Msa0033680:three_prime_UTR 55.0%
TGGACCAGGGTAAAGGAGGA+GGG - chr1_1:61299065-61299084 Msa0033680:three_prime_UTR 55.0%
CTGATGAAGCTTCCGGGAGT+GGG - chr1_1:61299098-61299117 Msa0033680:three_prime_UTR 55.0%
!! TCCTCGGTGCCAAATTGGGT+GGG - chr1_1:61299354-61299373 Msa0033680:three_prime_UTR 55.0%
! ATGGAAGGTGTGGGATTGGC+TGG - chr1_1:61299758-61299777 Msa0033680:CDS 55.0%
AGGACCTCCCAAAGGCAGAA+AGG + chr1_1:61300138-61300157 None:intergenic 55.0%
! TTTCTGCCTTTGGGAGGTCC+TGG - chr1_1:61300137-61300156 Msa0033680:intron 55.0%
ACTTCTCCAGGACCTCCCAA+AGG + chr1_1:61300146-61300165 None:intergenic 55.0%
GGAGCAGCAGGAACTGTAGT+AGG + chr1_1:61300243-61300262 None:intergenic 55.0%
ACTCTAGGTCGCATTGCTGG+TGG + chr1_1:61300270-61300289 None:intergenic 55.0%
CAGCAATGCGACCTAGAGTG+CGG - chr1_1:61300271-61300290 Msa0033680:intron 55.0%
AGCAATGCGACCTAGAGTGC+GGG - chr1_1:61300272-61300291 Msa0033680:intron 55.0%
ATCCCCACAGCATCGCTGAA+AGG - chr1_1:61300316-61300335 Msa0033680:intron 55.0%
TCCCCACAGCATCGCTGAAA+GGG - chr1_1:61300317-61300336 Msa0033680:intron 55.0%
ACCCTTTCAGCGATGCTGTG+GGG + chr1_1:61300321-61300340 None:intergenic 55.0%
CACCCTTTCAGCGATGCTGT+GGG + chr1_1:61300322-61300341 None:intergenic 55.0%
TCACCCTTTCAGCGATGCTG+TGG + chr1_1:61300323-61300342 None:intergenic 55.0%
! GCGAACCTGAGATGCCACTT+TGG - chr1_1:61301507-61301526 Msa0033680:intron 55.0%
GTGGGAGAAACCAACCAGCT+TGG - chr1_1:61302093-61302112 Msa0033680:intron 55.0%
ACCAACCAGCTTGGGAGAAG+TGG - chr1_1:61302102-61302121 Msa0033680:intron 55.0%
ACCACTTCTCCCAAGCTGGT+TGG + chr1_1:61302106-61302125 None:intergenic 55.0%
AGTTGTCCGACGGTTGCGAT+TGG + chr1_1:61302250-61302269 None:intergenic 55.0%
! CGAAGGCATGTCTATGGAGG+AGG + chr1_1:61302299-61302318 None:intergenic 55.0%
! GTAGTAGATGAGGCGCTCGA+TGG + chr1_1:61302350-61302369 None:intergenic 55.0%
CCGTCGGCGGAGGTGAAATT+CGG + chr1_1:61298938-61298957 None:intergenic 60.0%
CCGAATTTCACCTCCGCCGA+CGG - chr1_1:61298935-61298954 Msa0033680:three_prime_UTR 60.0%
CCACTCCCGGAAGCTTCATC+AGG + chr1_1:61299100-61299119 None:intergenic 60.0%
CCTGATGAAGCTTCCGGGAG+TGG - chr1_1:61299097-61299116 Msa0033680:three_prime_UTR 60.0%
!! CTCCTCGGTGCCAAATTGGG+TGG - chr1_1:61299353-61299372 Msa0033680:three_prime_UTR 60.0%
GGTCGCATTGCTGGTGGTTG+TGG + chr1_1:61300264-61300283 None:intergenic 60.0%
CGCACTCTAGGTCGCATTGC+TGG + chr1_1:61300273-61300292 None:intergenic 60.0%
CCTCTTCTTGCCCGCACTCT+AGG + chr1_1:61300285-61300304 None:intergenic 60.0%
CCTAGAGTGCGGGCAAGAAG+AGG - chr1_1:61300282-61300301 Msa0033680:intron 60.0%
AGTGCGGGCAAGAAGAGGAC+AGG - chr1_1:61300287-61300306 Msa0033680:intron 60.0%
GACTGATCGAGCTGCCATGC+TGG - chr1_1:61301274-61301293 Msa0033680:intron 60.0%
TACCAGTGGAGCCACTGCAC+CGG + chr1_1:61301951-61301970 None:intergenic 60.0%
TCGTCGGCGGGTGTATCGGA+AGG + chr1_1:61298890-61298909 None:intergenic 65.0%
!! AGAAGCGTCGGTTCCGTCGG+CGG + chr1_1:61298951-61298970 None:intergenic 65.0%
!! CGGAGAAGCGTCGGTTCCGT+CGG + chr1_1:61298954-61298973 None:intergenic 65.0%
AAGGTGAGAGGCAGCGTCGC+CGG + chr1_1:61298996-61299015 None:intergenic 65.0%
TCCTCCAGCGCCAAGGTGAG+AGG + chr1_1:61299008-61299027 None:intergenic 65.0%
! TCTCACCTTGGCGCTGGAGG+AGG - chr1_1:61299007-61299026 Msa0033680:three_prime_UTR 65.0%
! CTCACCTTGGCGCTGGAGGA+GGG - chr1_1:61299008-61299027 Msa0033680:three_prime_UTR 65.0%
GAAACCCTCCTCCAGCGCCA+AGG + chr1_1:61299015-61299034 None:intergenic 65.0%
CCGGAAACGCTTCCCACTCC+CGG + chr1_1:61299113-61299132 None:intergenic 65.0%
!! CCGGGAGTGGGAAGCGTTTC+CGG - chr1_1:61299110-61299129 Msa0033680:three_prime_UTR 65.0%
!! CGGGAGTGGGAAGCGTTTCC+GGG - chr1_1:61299111-61299130 Msa0033680:three_prime_UTR 65.0%
!! GAGTGGGAAGCGTTTCCGGG+AGG - chr1_1:61299114-61299133 Msa0033680:three_prime_UTR 65.0%
GCCCACCCAATTTGGCACCG+AGG + chr1_1:61299358-61299377 None:intergenic 65.0%
GCTGGTGGTTGTGGAGCAGC+AGG + chr1_1:61300255-61300274 None:intergenic 65.0%
ATTGGGTGGAGCCGGTGCAG+TGG - chr1_1:61301937-61301956 Msa0033680:intron 65.0%
GGCGACGCTGCCTCTCACCT+TGG - chr1_1:61298995-61299014 Msa0033680:three_prime_UTR 70.0%
GCTGCCTCTCACCTTGGCGC+TGG - chr1_1:61299001-61299020 Msa0033680:three_prime_UTR 70.0%
! GCCTCTCACCTTGGCGCTGG+AGG - chr1_1:61299004-61299023 Msa0033680:three_prime_UTR 70.0%
AGCCGGTGCAGTGGCTCCAC+TGG - chr1_1:61301946-61301965 Msa0033680:intron 70.0%
! GAGGCGCTCGATGGGACCAC+TGG + chr1_1:61302341-61302360 None:intergenic 70.0%
!! AGCGTCGGTTCCGTCGGCGG+AGG + chr1_1:61298948-61298967 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 61298689 61303185 61298689 ID=Msa0033680;Name=Msa0033680
chr1_1 mRNA 61298689 61303185 61298689 ID=Msa0033680-mRNA-1;Parent=Msa0033680;Name=Msa0033680-mRNA-1;_AED=0.12;_eAED=0.12;_QI=186|1|1|1|1|1|6|878|282
chr1_1 exon 61298689 61299797 61298689 ID=Msa0033680-mRNA-1:exon:19244;Parent=Msa0033680-mRNA-1
chr1_1 exon 61299877 61299954 61299877 ID=Msa0033680-mRNA-1:exon:19243;Parent=Msa0033680-mRNA-1
chr1_1 exon 61300534 61300599 61300534 ID=Msa0033680-mRNA-1:exon:19242;Parent=Msa0033680-mRNA-1
chr1_1 exon 61301342 61301407 61301342 ID=Msa0033680-mRNA-1:exon:19241;Parent=Msa0033680-mRNA-1
chr1_1 exon 61301536 61301655 61301536 ID=Msa0033680-mRNA-1:exon:19240;Parent=Msa0033680-mRNA-1
chr1_1 exon 61302712 61303185 61302712 ID=Msa0033680-mRNA-1:exon:19239;Parent=Msa0033680-mRNA-1
chr1_1 five_prime_UTR 61303000 61303185 61303000 ID=Msa0033680-mRNA-1:five_prime_utr;Parent=Msa0033680-mRNA-1
chr1_1 CDS 61302712 61302999 61302712 ID=Msa0033680-mRNA-1:cds;Parent=Msa0033680-mRNA-1
chr1_1 CDS 61301536 61301655 61301536 ID=Msa0033680-mRNA-1:cds;Parent=Msa0033680-mRNA-1
chr1_1 CDS 61301342 61301407 61301342 ID=Msa0033680-mRNA-1:cds;Parent=Msa0033680-mRNA-1
chr1_1 CDS 61300534 61300599 61300534 ID=Msa0033680-mRNA-1:cds;Parent=Msa0033680-mRNA-1
chr1_1 CDS 61299877 61299954 61299877 ID=Msa0033680-mRNA-1:cds;Parent=Msa0033680-mRNA-1
chr1_1 CDS 61299567 61299797 61299567 ID=Msa0033680-mRNA-1:cds;Parent=Msa0033680-mRNA-1
chr1_1 three_prime_UTR 61298689 61299566 61298689 ID=Msa0033680-mRNA-1:three_prime_utr;Parent=Msa0033680-mRNA-1
Gene Sequence

>Msa0033680

ATGGCGAATCATCCTTCCGATACACCCGCCGACGATTTCCTTGAACAAATTCTCGGTCTTCCGAATTTCACCTCCGCCGACGGAACCGACGCTTCTCCGATGATGCTGCAGCTTAACTCCGGCGACGCTGCCTCTCACCTTGGCGCTGGAGGAGGGTTTCATGCACCGGTTTATCATTTGGGTTTGAGCTTGGACCAGGGTAAAGGAGGAGGGTTTTTGAAGCCTGATGAAGCTTCCGGGAGTGGGAAGCGTTTCCGGGAGGATCTTGTTGATACAAGACCTAAGAATACTTTTCATGGGCAACCCATGCCTACTACAGTTCCTGCTGCTCCACAACCACCAGCAATGCGACCTAGAGTGCGGGCAAGAAGAGGACAGGCTACAGATCCCCACAGCATCGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTCAACAAGACTGATCGAGCTGCCATGCTGGATGAAATTGTGGATTATGTCAAATTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCTCCACTGGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGAAGTGAGAGTGGGAGAAACCAACCAGCTTGGGAGAAGTGGTCTAATGATGGCACCGAAAAGCAAGTAGCTAAGCTCATGGAAGAAAATGTTGGGGCTGCGATGCAGTTTCTTCAATCAAAGGCTCTCTGCATAATGCCCATCTCACTGGCATCTGCAATATACCAATCGCAACCGTCGGACAACTCCAGTATAGTTAAGCCTGAAACTATTCCTCCTCCATAG
Protein sequence

>Msa0033680

MANHPSDTPADDFLEQILGLPNFTSADGTDASPMMLQLNSGDAASHLGAGGGFHAPVYHLGLSLDQGKGGGFLKPDEASGSGKRFREDLVDTRPKNTFHGQPMPTTVPAAPQPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSESGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETIPPP*