Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0034380 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 480 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGTTGGGTTTGAAAGCTT+TGG | 0.278312 | 1_1:-62329619 | None:intergenic |
| GAGTTGGGTTTGAAAGCTTT+GGG | 0.313526 | 1_1:-62329618 | None:intergenic |
| ATAGTCTTCAAGGGTTCCTT+TGG | 0.332237 | 1_1:-62329530 | None:intergenic |
| TCAAACAACAAAATATTATC+TGG | 0.350768 | 1_1:-62336220 | None:intergenic |
| CACAAGATTGGCTTCTCATA+TGG | 0.363409 | 1_1:-62329481 | None:intergenic |
| TTTCAACAGAAACTAAAGTT+TGG | 0.373286 | 1_1:+62329449 | Msa0034380:CDS |
| ATACTTTGCTGAGCTATCTT+CGG | 0.400089 | 1_1:-62329556 | None:intergenic |
| GACTATGAGGCCGACACTAA+TGG | 0.401191 | 1_1:+62336117 | Msa0034380:CDS |
| TACTTTGCTGAGCTATCTTC+GGG | 0.431538 | 1_1:-62329555 | None:intergenic |
| CCAAGTAATGAGATCGGCCT+TGG | 0.442800 | 1_1:+62336262 | Msa0034380:CDS |
| CCACAGGCGTTACACAAGAT+TGG | 0.446240 | 1_1:-62329493 | None:intergenic |
| GAAACTAAAGTTTGGCGTAA+AGG | 0.450000 | 1_1:+62329457 | Msa0034380:CDS |
| TCTTCGGGAGATAGTCTTCA+AGG | 0.462167 | 1_1:-62329540 | None:intergenic |
| CCAAGGCCGATCTCATTACT+TGG | 0.469229 | 1_1:-62336262 | None:intergenic |
| CGCCTGTGGATTGCATTTCA+AGG | 0.472275 | 1_1:+62329507 | Msa0034380:CDS |
| GGCCTTGAAATGCAATCCAC+AGG | 0.512475 | 1_1:-62329509 | None:intergenic |
| GTCAGTGTCTCCATTAGTGT+CGG | 0.538511 | 1_1:-62336127 | None:intergenic |
| AAGCTTTCAAACCCAACTCC+AGG | 0.571736 | 1_1:+62329622 | Msa0034380:CDS |
| ATTAGTGTCGGCCTCATAGT+CGG | 0.574226 | 1_1:-62336115 | None:intergenic |
| AGAGGTCGGCACCGACTATG+AGG | 0.586753 | 1_1:+62336104 | Msa0034380:CDS |
| AATGGAGACACTGACACCAA+TGG | 0.595378 | 1_1:+62336135 | Msa0034380:CDS |
| TTTATACCAAGTAATGAGAT+CGG | 0.595926 | 1_1:+62336256 | Msa0034380:CDS |
| CCAATCTTGTGTAACGCCTG+TGG | 0.600058 | 1_1:+62329493 | Msa0034380:CDS |
| CTTCGGGAGATAGTCTTCAA+GGG | 0.601274 | 1_1:-62329539 | None:intergenic |
| TCTTTAGAAGAGTGCAGCCA+AGG | 0.606342 | 1_1:-62336279 | None:intergenic |
| GGATTGCATTTCAAGGCCAA+AGG | 0.606742 | 1_1:+62329514 | Msa0034380:CDS |
| GGAGACACTGACACCAATGG+AGG | 0.696756 | 1_1:+62336138 | Msa0034380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTAAAAACTTTAG+CGG | - | chr1_1:62329785-62329804 | None:intergenic | 10.0% |
| !!! | AGTATTATTTTTAATGAAAA+GGG | + | chr1_1:62331130-62331149 | Msa0034380:intron | 10.0% |
| !!! | ATTTTTATTGAAATTGATAT+AGG | + | chr1_1:62332801-62332820 | Msa0034380:intron | 10.0% |
| !!! | TTTTTATTGAAATTGATATA+GGG | + | chr1_1:62332802-62332821 | Msa0034380:intron | 10.0% |
| !! | AAAATATTAATAGACAATTT+AGG | + | chr1_1:62333121-62333140 | Msa0034380:intron | 10.0% |
| !! | TGTGAATATAATAAATGTTA+AGG | + | chr1_1:62330038-62330057 | Msa0034380:intron | 15.0% |
| !! | ATAATAAATGTTAAGGAAAT+AGG | + | chr1_1:62330045-62330064 | Msa0034380:intron | 15.0% |
| !!! | CAGTATTATTTTTAATGAAA+AGG | + | chr1_1:62331129-62331148 | Msa0034380:intron | 15.0% |
| !! | ATTTGATTAATTTACAAACT+TGG | + | chr1_1:62331249-62331268 | Msa0034380:intron | 15.0% |
| !! | AAATCGAAATTATACTTAAA+TGG | + | chr1_1:62333160-62333179 | Msa0034380:intron | 15.0% |
| !! | TGTGAATATAATAAATGTTA+AGG | + | chr1_1:62330038-62330057 | Msa0034380:intron | 15.0% |
| !! | ATAATAAATGTTAAGGAAAT+AGG | + | chr1_1:62330045-62330064 | Msa0034380:intron | 15.0% |
| !! | ATAGAATCATCTTTAAATTA+TGG | - | chr1_1:62335168-62335187 | None:intergenic | 15.0% |
| !!! | TTATAATATCATTAGCTTAA+AGG | - | chr1_1:62335383-62335402 | None:intergenic | 15.0% |
| !! | TTTAAGCTAATGATATTATA+AGG | + | chr1_1:62335382-62335401 | Msa0034380:intron | 15.0% |
| !! | TAATCATTTATTTGTATCAT+CGG | - | chr1_1:62336020-62336039 | None:intergenic | 15.0% |
| !! | TCATATACAATACATATTAA+TGG | - | chr1_1:62336044-62336063 | None:intergenic | 15.0% |
| !!! | CTTTAAATTTGGTGAAATAT+GGG | - | chr1_1:62329667-62329686 | None:intergenic | 20.0% |
| !!! | AATAACTTCAGCTTTAAATT+TGG | - | chr1_1:62329678-62329697 | None:intergenic | 20.0% |
| !! | GAAAAATGGATGATATAAAA+TGG | - | chr1_1:62329711-62329730 | None:intergenic | 20.0% |
| !! | ATGCATTATAAAAGGAAAAA+TGG | - | chr1_1:62329725-62329744 | None:intergenic | 20.0% |
| !! | ATCAATCAATGCATTATAAA+AGG | - | chr1_1:62329733-62329752 | None:intergenic | 20.0% |
| !! | CAACTCATATATAAATGTTA+GGG | - | chr1_1:62329955-62329974 | None:intergenic | 20.0% |
| !! | ACAACTCATATATAAATGTT+AGG | - | chr1_1:62329956-62329975 | None:intergenic | 20.0% |
| !! | TTTATCAGACTTGTATATAT+AGG | - | chr1_1:62330080-62330099 | None:intergenic | 20.0% |
| !!! | GTGTGTATTGTTTTATTATT+GGG | - | chr1_1:62330117-62330136 | None:intergenic | 20.0% |
| !!! | AGTGTGTATTGTTTTATTAT+TGG | - | chr1_1:62330118-62330137 | None:intergenic | 20.0% |
| !! | ATAAAACAATACACACTAAT+AGG | + | chr1_1:62330121-62330140 | Msa0034380:intron | 20.0% |
| !! | AAATTCAAGATTAAAGACTT+GGG | - | chr1_1:62331014-62331033 | None:intergenic | 20.0% |
| !!! | ATTATTTTTAATGAAAAGGG+AGG | + | chr1_1:62331133-62331152 | Msa0034380:intron | 20.0% |
| !!! | TTATTTTTAATGAAAAGGGA+GGG | + | chr1_1:62331134-62331153 | Msa0034380:intron | 20.0% |
| !! | AAATTAATCAAATCCCTTTA+TGG | - | chr1_1:62331242-62331261 | None:intergenic | 20.0% |
| !! | AAAATTAAGTATCAAGCAAA+TGG | - | chr1_1:62331518-62331537 | None:intergenic | 20.0% |
| !! | TATGACAAGTAATTTGATAT+AGG | + | chr1_1:62331740-62331759 | Msa0034380:intron | 20.0% |
| !!! | TTTGTTCCATGTTATTTAAA+GGG | + | chr1_1:62331858-62331877 | Msa0034380:intron | 20.0% |
| !! | AATGAATCATCAAATATCAA+AGG | + | chr1_1:62331959-62331978 | Msa0034380:intron | 20.0% |
| !!! | ATATTTTTGGGGTATAAAAT+TGG | - | chr1_1:62332130-62332149 | None:intergenic | 20.0% |
| !! | TCTACTTATTATTCTTCTTT+AGG | - | chr1_1:62332472-62332491 | None:intergenic | 20.0% |
| !!! | TTCATAATAATTTTGATGTC+TGG | - | chr1_1:62332885-62332904 | None:intergenic | 20.0% |
| !!! | TTGTGAAAGATTTTATGAAA+GGG | + | chr1_1:62333310-62333329 | Msa0034380:intron | 20.0% |
| !!! | ATGAAATCTTCTTTTAACAA+CGG | - | chr1_1:62333600-62333619 | None:intergenic | 20.0% |
| !! | TACTGATATGAAAATCATTT+GGG | - | chr1_1:62334069-62334088 | None:intergenic | 20.0% |
| !! | TTACTGATATGAAAATCATT+TGG | - | chr1_1:62334070-62334089 | None:intergenic | 20.0% |
| !!! | GATTTTCATATCAGTAAAAT+AGG | + | chr1_1:62334073-62334092 | Msa0034380:intron | 20.0% |
| !! | ATTGTACTTTGATAAATATG+AGG | + | chr1_1:62334224-62334243 | Msa0034380:intron | 20.0% |
| !! | TTGTACTTTGATAAATATGA+GGG | + | chr1_1:62334225-62334244 | Msa0034380:intron | 20.0% |
| !!! | AGAAGAAGAAAGATAATTTT+AGG | + | chr1_1:62334577-62334596 | Msa0034380:intron | 20.0% |
| !!! | GAAGAAGAAAGATAATTTTA+GGG | + | chr1_1:62334578-62334597 | Msa0034380:intron | 20.0% |
| !!! | CAAACTTTATACTTGTTATA+TGG | - | chr1_1:62330020-62330039 | None:intergenic | 20.0% |
| !! | TTTATCAGACTTGTATATAT+AGG | - | chr1_1:62330080-62330099 | None:intergenic | 20.0% |
| !!! | GTGTGTATTGTTTTATTATT+GGG | - | chr1_1:62330117-62330136 | None:intergenic | 20.0% |
| !!! | AGTGTGTATTGTTTTATTAT+TGG | - | chr1_1:62330118-62330137 | None:intergenic | 20.0% |
| !! | ATAAAACAATACACACTAAT+AGG | + | chr1_1:62330121-62330140 | Msa0034380:intron | 20.0% |
| !!! | TTGTTCAAAAGTACTATTAT+TGG | + | chr1_1:62334987-62335006 | Msa0034380:intron | 20.0% |
| !!! | AACAAAAACTTTTCAATCTA+TGG | + | chr1_1:62336167-62336186 | Msa0034380:CDS | 20.0% |
| !!! | ACAAAAACTTTTCAATCTAT+GGG | + | chr1_1:62336168-62336187 | Msa0034380:CDS | 20.0% |
| !! | TCAAACAACAAAATATTATC+TGG | - | chr1_1:62336223-62336242 | None:intergenic | 20.0% |
| ! | TTTCAACAGAAACTAAAGTT+TGG | + | chr1_1:62329449-62329468 | Msa0034380:CDS | 25.0% |
| !!! | CAGATATTTTTTCAATGTCA+AGG | - | chr1_1:62329591-62329610 | None:intergenic | 25.0% |
| !! | AATTTTTATTACCTGGAGTT+GGG | - | chr1_1:62329636-62329655 | None:intergenic | 25.0% |
| !! | GAATTGCAATTTTTATTACC+TGG | - | chr1_1:62329643-62329662 | None:intergenic | 25.0% |
| !! | GCTTTAAATTTGGTGAAATA+TGG | - | chr1_1:62329668-62329687 | None:intergenic | 25.0% |
| ! | AATGGATGATATAAAATGGA+GGG | - | chr1_1:62329707-62329726 | None:intergenic | 25.0% |
| ! | AAATGGATGATATAAAATGG+AGG | - | chr1_1:62329708-62329727 | None:intergenic | 25.0% |
| ! | TCGATTGAAAATGAAAATGA+TGG | + | chr1_1:62329816-62329835 | Msa0034380:intron | 25.0% |
| ! | CGATTGAAAATGAAAATGAT+GGG | + | chr1_1:62329817-62329836 | Msa0034380:intron | 25.0% |
| ! | CATTGTACGAATATTCTTAA+CGG | + | chr1_1:62329898-62329917 | Msa0034380:intron | 25.0% |
| ! | ATTGTACGAATATTCTTAAC+GGG | + | chr1_1:62329899-62329918 | Msa0034380:intron | 25.0% |
| !!! | ATTGATAGTGAAGCAAATTA+CGG | - | chr1_1:62329990-62330009 | None:intergenic | 25.0% |
| ! | TCTGATAAAATACAGAAAAG+AGG | + | chr1_1:62330091-62330110 | Msa0034380:intron | 25.0% |
| ! | TTGGTTATGAATGAATTGAA+AGG | + | chr1_1:62330183-62330202 | Msa0034380:intron | 25.0% |
| !! | CAAATTCATCTTTTCATGAA+AGG | - | chr1_1:62330335-62330354 | None:intergenic | 25.0% |
| !!! | AACTGTTTCTAAATCATCAT+CGG | - | chr1_1:62330493-62330512 | None:intergenic | 25.0% |
| !! | GAGAACTTTTAATGTATCTA+AGG | + | chr1_1:62330670-62330689 | Msa0034380:intron | 25.0% |
| ! | TTTACCAATTAATCGTCTAT+AGG | + | chr1_1:62330800-62330819 | Msa0034380:intron | 25.0% |
| ! | ACCAAATTGTCACAAAAATT+AGG | - | chr1_1:62330849-62330868 | None:intergenic | 25.0% |
| ! | CAAATTCAAGATTAAAGACT+TGG | - | chr1_1:62331015-62331034 | None:intergenic | 25.0% |
| !! | TTTACAAACTTGGTTTGATT+TGG | + | chr1_1:62331259-62331278 | Msa0034380:intron | 25.0% |
| ! | AGAAATGAATGCATAATGAA+AGG | + | chr1_1:62331703-62331722 | Msa0034380:intron | 25.0% |
| !! | GTTTGTTCCATGTTATTTAA+AGG | + | chr1_1:62331857-62331876 | Msa0034380:intron | 25.0% |
| !! | TTGTTCCATGTTATTTAAAG+GGG | + | chr1_1:62331859-62331878 | Msa0034380:intron | 25.0% |
| ! | GCATCATGTAAATTTGTATA+TGG | + | chr1_1:62332022-62332041 | Msa0034380:intron | 25.0% |
| ! | AATAGCATGTCTAGAAATAA+AGG | + | chr1_1:62332063-62332082 | Msa0034380:intron | 25.0% |
| ! | ATCGAATAAGATATAACCTT+TGG | + | chr1_1:62332102-62332121 | Msa0034380:intron | 25.0% |
| ! | TGTTGAAAAAGTAACTCAAA+GGG | + | chr1_1:62332250-62332269 | Msa0034380:intron | 25.0% |
| !! | CCAAATTACCTAAATGTTTT+TGG | - | chr1_1:62332345-62332364 | None:intergenic | 25.0% |
| ! | CCAAAAACATTTAGGTAATT+TGG | + | chr1_1:62332342-62332361 | Msa0034380:intron | 25.0% |
| ! | TGAAACATAAATCTGATACA+AGG | - | chr1_1:62332588-62332607 | None:intergenic | 25.0% |
| !!! | ATGACTTTTCAAGATATACT+TGG | - | chr1_1:62332621-62332640 | None:intergenic | 25.0% |
| ! | TTGAAATCCTTGTAAAGATA+TGG | + | chr1_1:62332660-62332679 | Msa0034380:intron | 25.0% |
| ! | ATTAGTTCCATATCTTTACA+AGG | - | chr1_1:62332670-62332689 | None:intergenic | 25.0% |
| ! | TTGTAAAGATATGGAACTAA+TGG | + | chr1_1:62332669-62332688 | Msa0034380:intron | 25.0% |
| ! | TGTAAAGATATGGAACTAAT+GGG | + | chr1_1:62332670-62332689 | Msa0034380:intron | 25.0% |
| !! | TCTTTTGCATATGGATATAT+GGG | - | chr1_1:62332698-62332717 | None:intergenic | 25.0% |
| !! | ATCTTTTGCATATGGATATA+TGG | - | chr1_1:62332699-62332718 | None:intergenic | 25.0% |
| ! | ACTATTTGGAAAAGGTAATT+TGG | + | chr1_1:62332744-62332763 | Msa0034380:intron | 25.0% |
| ! | ACAGAAAAAGAAACACTATT+CGG | + | chr1_1:62332988-62333007 | Msa0034380:intron | 25.0% |
| ! | TTCTAATTCTTGTATACTTC+AGG | - | chr1_1:62333100-62333119 | None:intergenic | 25.0% |
| ! | ATTATACTTAAATGGAACTC+TGG | + | chr1_1:62333168-62333187 | Msa0034380:intron | 25.0% |
| !! | GTTGTGAAAGATTTTATGAA+AGG | + | chr1_1:62333309-62333328 | Msa0034380:intron | 25.0% |
| ! | AAGATTTGAGAAGATTTATC+AGG | + | chr1_1:62333472-62333491 | Msa0034380:intron | 25.0% |
| ! | GAATATGTCTTAGAAATTGA+AGG | + | chr1_1:62333867-62333886 | Msa0034380:intron | 25.0% |
| ! | AAGGATCCATTAAAAGAATT+TGG | + | chr1_1:62333892-62333911 | Msa0034380:intron | 25.0% |
| ! | AGGATCCATTAAAAGAATTT+GGG | + | chr1_1:62333893-62333912 | Msa0034380:intron | 25.0% |
| !! | ATATACTCTGTTTCTTGAAA+GGG | - | chr1_1:62333947-62333966 | None:intergenic | 25.0% |
| !! | TATATACTCTGTTTCTTGAA+AGG | - | chr1_1:62333948-62333967 | None:intergenic | 25.0% |
| !! | ATTTTTATATGTACGAACAG+AGG | + | chr1_1:62333974-62333993 | Msa0034380:intron | 25.0% |
| !!! | TACCAAAGGCAATTATTTTA+GGG | - | chr1_1:62334156-62334175 | None:intergenic | 25.0% |
| !! | TTACCAAAGGCAATTATTTT+AGG | - | chr1_1:62334157-62334176 | None:intergenic | 25.0% |
| ! | TGTACTTTGATAAATATGAG+GGG | + | chr1_1:62334226-62334245 | Msa0034380:intron | 25.0% |
| ! | GTAATAACATGGTAATTTCT+TGG | - | chr1_1:62334268-62334287 | None:intergenic | 25.0% |
| ! | AACAAAATCAAGTTCATCAA+TGG | - | chr1_1:62334344-62334363 | None:intergenic | 25.0% |
| !!! | GATAATTTTAGGGTTTGAAA+AGG | + | chr1_1:62334588-62334607 | Msa0034380:intron | 25.0% |
| ! | TCTGATAAAATACAGAAAAG+AGG | + | chr1_1:62330091-62330110 | Msa0034380:intron | 25.0% |
| ! | TATTTGTCTAACTTGAAACA+TGG | - | chr1_1:62335245-62335264 | None:intergenic | 25.0% |
| ! | TCGTAATTTCTTTGATGTTA+TGG | + | chr1_1:62335511-62335530 | Msa0034380:intron | 25.0% |
| ! | ATAGTTTACATTTCCTTGTT+AGG | + | chr1_1:62335720-62335739 | Msa0034380:intron | 25.0% |
| ! | TTTATACCAAGTAATGAGAT+CGG | + | chr1_1:62336256-62336275 | Msa0034380:CDS | 25.0% |
| ! | CAATTTTTATTACCTGGAGT+TGG | - | chr1_1:62329637-62329656 | None:intergenic | 30.0% |
| GACTCATAAGTAGTGTAAAA+TGG | + | chr1_1:62329843-62329862 | Msa0034380:intron | 30.0% | |
| ATAAGTAGTGTAAAATGGAC+AGG | + | chr1_1:62329848-62329867 | Msa0034380:intron | 30.0% | |
| TTGCTTCACTATCAATAAGA+TGG | + | chr1_1:62329994-62330013 | Msa0034380:intron | 30.0% | |
| AATTCATTCATAACCAAGCT+GGG | - | chr1_1:62330180-62330199 | None:intergenic | 30.0% | |
| ATGAATGAATTGAAAGGAAG+AGG | + | chr1_1:62330189-62330208 | Msa0034380:intron | 30.0% | |
| TGAATGAATTGAAAGGAAGA+GGG | + | chr1_1:62330190-62330209 | Msa0034380:intron | 30.0% | |
| AAGATGAATTTGCAGCTATA+TGG | + | chr1_1:62330343-62330362 | Msa0034380:intron | 30.0% | |
| GATAGCAGAAAATCTATTAG+TGG | - | chr1_1:62330570-62330589 | None:intergenic | 30.0% | |
| ! | CTAATAGATTTTCTGCTATC+CGG | + | chr1_1:62330570-62330589 | Msa0034380:intron | 30.0% |
| ! | TAATAGATTTTCTGCTATCC+GGG | + | chr1_1:62330571-62330590 | Msa0034380:intron | 30.0% |
| AATGTATCTAAGGACTCTTA+TGG | + | chr1_1:62330680-62330699 | Msa0034380:intron | 30.0% | |
| AAGACCAGATATCTCTTATT+CGG | - | chr1_1:62330760-62330779 | None:intergenic | 30.0% | |
| GTATCCTATAGACGATTAAT+TGG | - | chr1_1:62330807-62330826 | None:intergenic | 30.0% | |
| ATTAATCGTCTATAGGATAC+AGG | + | chr1_1:62330807-62330826 | Msa0034380:intron | 30.0% | |
| ! | GCCTAATTTTTGTGACAATT+TGG | + | chr1_1:62330845-62330864 | Msa0034380:intron | 30.0% |
| ! | GGTTATTTAAAGTACTTCCT+CGG | - | chr1_1:62330993-62331012 | None:intergenic | 30.0% |
| !!! | GTAGATGATCTTATTTTAGC+TGG | - | chr1_1:62331083-62331102 | None:intergenic | 30.0% |
| AACAAGCAAAGCTGTAAAAT+AGG | + | chr1_1:62331106-62331125 | Msa0034380:intron | 30.0% | |
| !!! | CTTGTATCCTTTTAAGATCA+AGG | + | chr1_1:62331172-62331191 | Msa0034380:intron | 30.0% |
| TTTGGAAAACCATTGTTTAC+TGG | + | chr1_1:62331205-62331224 | Msa0034380:intron | 30.0% | |
| TGAAACAATCCAGTAAACAA+TGG | - | chr1_1:62331217-62331236 | None:intergenic | 30.0% | |
| TGGATTGTTTCAATCCATAA+AGG | + | chr1_1:62331225-62331244 | Msa0034380:intron | 30.0% | |
| GGATTGTTTCAATCCATAAA+GGG | + | chr1_1:62331226-62331245 | Msa0034380:intron | 30.0% | |
| ! | CTATTTCTTCTTCTCAAAAC+TGG | - | chr1_1:62331376-62331395 | None:intergenic | 30.0% |
| AAGCAAATGGTGATATTGAA+AGG | - | chr1_1:62331505-62331524 | None:intergenic | 30.0% | |
| TGAAAATCCTTCAAATAACC+TGG | + | chr1_1:62331800-62331819 | Msa0034380:intron | 30.0% | |
| AATAGAATCATAAAACCTCC+AGG | - | chr1_1:62331821-62331840 | None:intergenic | 30.0% | |
| AGATTCCCCTTTAAATAACA+TGG | - | chr1_1:62331867-62331886 | None:intergenic | 30.0% | |
| AATTTACATGATGCTAATGC+TGG | - | chr1_1:62332016-62332035 | None:intergenic | 30.0% | |
| CTGTTGAAAAAGTAACTCAA+AGG | + | chr1_1:62332249-62332268 | Msa0034380:intron | 30.0% | |
| GTTGAAAAAGTAACTCAAAG+GGG | + | chr1_1:62332251-62332270 | Msa0034380:intron | 30.0% | |
| TTGAAAAAGTAACTCAAAGG+GGG | + | chr1_1:62332252-62332271 | Msa0034380:intron | 30.0% | |
| GCATATGACCAAAAACATTT+AGG | + | chr1_1:62332334-62332353 | Msa0034380:intron | 30.0% | |
| CCATTGTTGAAAGAAAACAT+AGG | - | chr1_1:62332405-62332424 | None:intergenic | 30.0% | |
| ! | CCTATGTTTTCTTTCAACAA+TGG | + | chr1_1:62332402-62332421 | Msa0034380:intron | 30.0% |
| ! | TCAACAATGGAATTTTGTTG+TGG | + | chr1_1:62332415-62332434 | Msa0034380:intron | 30.0% |
| !! | CAACAATGGAATTTTGTTGT+GGG | + | chr1_1:62332416-62332435 | Msa0034380:intron | 30.0% |
| !! | AACAATGGAATTTTGTTGTG+GGG | + | chr1_1:62332417-62332436 | Msa0034380:intron | 30.0% |
| AAAGCAATTAGAAGCGATAA+TGG | - | chr1_1:62332511-62332530 | None:intergenic | 30.0% | |
| TCTTGAAAAGTCATCAACAA+TGG | + | chr1_1:62332627-62332646 | Msa0034380:intron | 30.0% | |
| GTAAAGATATGGAACTAATG+GGG | + | chr1_1:62332671-62332690 | Msa0034380:intron | 30.0% | |
| ! | CTTTTGCATATGGATATATG+GGG | - | chr1_1:62332697-62332716 | None:intergenic | 30.0% |
| ! | TTGCTTTGATCTTTTGCATA+TGG | - | chr1_1:62332707-62332726 | None:intergenic | 30.0% |
| ATGCAAAAGATCAAAGCAAT+TGG | + | chr1_1:62332708-62332727 | Msa0034380:intron | 30.0% | |
| ! | GAAGAAGTATGTTCACTATT+TGG | + | chr1_1:62332730-62332749 | Msa0034380:intron | 30.0% |
| GTATGTTCACTATTTGGAAA+AGG | + | chr1_1:62332736-62332755 | Msa0034380:intron | 30.0% | |
| !! | ATTTTGATGTCTGGCATTAT+AGG | - | chr1_1:62332876-62332895 | None:intergenic | 30.0% |
| CTACTAATAGAGTGATTAAC+AGG | + | chr1_1:62332907-62332926 | Msa0034380:intron | 30.0% | |
| AAAAGAAACACTATTCGGAA+AGG | + | chr1_1:62332993-62333012 | Msa0034380:intron | 30.0% | |
| ATACTCAATCAAACTCCTAA+GGG | - | chr1_1:62333024-62333043 | None:intergenic | 30.0% | |
| GCAAATAACGAATTTCCATT+AGG | + | chr1_1:62333252-62333271 | Msa0034380:intron | 30.0% | |
| ! | ATCTTAGTGAGTTTTCCTAA+TGG | - | chr1_1:62333270-62333289 | None:intergenic | 30.0% |
| TTAGGAAAACTCACTAAGAT+AGG | + | chr1_1:62333270-62333289 | Msa0034380:intron | 30.0% | |
| CTCTGTATCATCAATCTATT+TGG | - | chr1_1:62333368-62333387 | None:intergenic | 30.0% | |
| TCAACACTTCTGTTATTGTT+AGG | + | chr1_1:62333546-62333565 | Msa0034380:intron | 30.0% | |
| CAACACTTCTGTTATTGTTA+GGG | + | chr1_1:62333547-62333566 | Msa0034380:intron | 30.0% | |
| ! | AAATCTTCTTTTAACAACGG+TGG | - | chr1_1:62333597-62333616 | None:intergenic | 30.0% |
| TGATTTCTTGATCTATATCC+TGG | + | chr1_1:62333630-62333649 | Msa0034380:intron | 30.0% | |
| !!! | ATGGTTAGTTTTATTGCAGT+TGG | + | chr1_1:62333689-62333708 | Msa0034380:intron | 30.0% |
| AGAATTGACACTGAAAACAT+TGG | + | chr1_1:62333797-62333816 | Msa0034380:intron | 30.0% | |
| ! | TCGAACCCAAATTCTTTTAA+TGG | - | chr1_1:62333901-62333920 | None:intergenic | 30.0% |
| ! | GAAAATCATTTGGGATGAAT+TGG | - | chr1_1:62334060-62334079 | None:intergenic | 30.0% |
| AACCCTAAAATAATTGCCTT+TGG | + | chr1_1:62334151-62334170 | Msa0034380:intron | 30.0% | |
| TTGATTCTGCGTATGAATTA+TGG | - | chr1_1:62334199-62334218 | None:intergenic | 30.0% | |
| TTCTTCTTTCTTATTCACCA+TGG | - | chr1_1:62334564-62334583 | None:intergenic | 30.0% | |
| TGATGTTTGGTTACAAAGTT+TGG | - | chr1_1:62334827-62334846 | None:intergenic | 30.0% | |
| AACTTTGTAACCAAACATCA+TGG | + | chr1_1:62334827-62334846 | Msa0034380:intron | 30.0% | |
| AAACAATGAACCATGATGTT+TGG | - | chr1_1:62334840-62334859 | None:intergenic | 30.0% | |
| AGGAATTATGAAGGTTAGAA+AGG | + | chr1_1:62334914-62334933 | Msa0034380:intron | 30.0% | |
| GGAATTATGAAGGTTAGAAA+GGG | + | chr1_1:62334915-62334934 | Msa0034380:intron | 30.0% | |
| TAATACTGATGAGATCAAAC+AGG | + | chr1_1:62334943-62334962 | Msa0034380:intron | 30.0% | |
| GATATTATAAGGTGTGAGAA+TGG | + | chr1_1:62335393-62335412 | Msa0034380:intron | 30.0% | |
| CATTCACATTCTATTTGAGT+AGG | - | chr1_1:62335445-62335464 | None:intergenic | 30.0% | |
| TTCTATCATAAAGTCACCAT+TGG | - | chr1_1:62335484-62335503 | None:intergenic | 30.0% | |
| ATGCCAACATGAGTATTATT+GGG | + | chr1_1:62335597-62335616 | Msa0034380:intron | 30.0% | |
| CAAATTTCAACTACCTAACA+AGG | - | chr1_1:62335736-62335755 | None:intergenic | 30.0% | |
| CTTGTTAGGTAGTTGAAATT+TGG | + | chr1_1:62335734-62335753 | Msa0034380:intron | 30.0% | |
| ! | CAAATGAATCCTCTTTTCAT+TGG | - | chr1_1:62335814-62335833 | None:intergenic | 30.0% |
| AAAGACAACTAAAGAAGAGT+TGG | + | chr1_1:62335936-62335955 | Msa0034380:intron | 30.0% | |
| !!! | TAGTACCTTATTTTGTAGAG+AGG | + | chr1_1:62336086-62336105 | Msa0034380:intron | 30.0% |
| GAAACTAAAGTTTGGCGTAA+AGG | + | chr1_1:62329457-62329476 | Msa0034380:CDS | 35.0% | |
| ATACTTTGCTGAGCTATCTT+CGG | - | chr1_1:62329559-62329578 | None:intergenic | 35.0% | |
| ! | ATTCTTAACGGGTACAATTC+AGG | + | chr1_1:62329910-62329929 | Msa0034380:intron | 35.0% |
| ! | TTCTTAACGGGTACAATTCA+GGG | + | chr1_1:62329911-62329930 | Msa0034380:intron | 35.0% |
| !!! | GATGTTTTTTAATCCCAGCT+TGG | + | chr1_1:62330164-62330183 | Msa0034380:intron | 35.0% |
| CAATTCATTCATAACCAAGC+TGG | - | chr1_1:62330181-62330200 | None:intergenic | 35.0% | |
| ! | GTAATTTTTCTCGCACTATG+TGG | + | chr1_1:62330286-62330305 | Msa0034380:intron | 35.0% |
| CTACAGTTTGTGAATTGCAA+TGG | - | chr1_1:62330446-62330465 | None:intergenic | 35.0% | |
| ! | TGTTTCTAAATCATCATCGG+AGG | - | chr1_1:62330490-62330509 | None:intergenic | 35.0% |
| !! | AGTGGATTTTGCATCTTCTT+GGG | - | chr1_1:62330552-62330571 | None:intergenic | 35.0% |
| !!! | TAGTGGATTTTGCATCTTCT+TGG | - | chr1_1:62330553-62330572 | None:intergenic | 35.0% |
| AGAAGGAAAAAAAAGTCCCA+AGG | + | chr1_1:62330644-62330663 | Msa0034380:intron | 35.0% | |
| ATTAAAAGTTCTCCTGCCTT+GGG | - | chr1_1:62330663-62330682 | None:intergenic | 35.0% | |
| TGTACCGAATAAGAGATATC+TGG | + | chr1_1:62330753-62330772 | Msa0034380:intron | 35.0% | |
| !! | AGAGATATCTGGTCTTGTAT+TGG | + | chr1_1:62330764-62330783 | Msa0034380:intron | 35.0% |
| !! | TATCTGGTCTTGTATTGGTA+AGG | + | chr1_1:62330769-62330788 | Msa0034380:intron | 35.0% |
| GAGATTTCAAGATCTCAATC+TGG | - | chr1_1:62330966-62330985 | None:intergenic | 35.0% | |
| ! | TTTAAAGTACTTCCTCGGAT+TGG | - | chr1_1:62330988-62331007 | None:intergenic | 35.0% |
| TTTAGCTGGAAATGATATCG+AGG | - | chr1_1:62331069-62331088 | None:intergenic | 35.0% | |
| TCACATGCCTTGATCTTAAA+AGG | - | chr1_1:62331182-62331201 | None:intergenic | 35.0% | |
| ! | TGCATTTTTGCATGGTGATT+TGG | - | chr1_1:62331327-62331346 | None:intergenic | 35.0% |
| ! | GTACACAATGCATTTTTGCA+TGG | - | chr1_1:62331335-62331354 | None:intergenic | 35.0% |
| ! | ACAGTTGTAAGTTTTGCAAC+AGG | + | chr1_1:62331410-62331429 | Msa0034380:intron | 35.0% |
| !! | AAAGGGTATACTCAAGTTGA+AGG | - | chr1_1:62331461-62331480 | None:intergenic | 35.0% |
| AAGCTCGATTAGTAGCTAAA+GGG | - | chr1_1:62331478-62331497 | None:intergenic | 35.0% | |
| AAAGCTCGATTAGTAGCTAA+AGG | - | chr1_1:62331479-62331498 | None:intergenic | 35.0% | |
| ATACACCCATTTACATCCTA+TGG | + | chr1_1:62331538-62331557 | Msa0034380:intron | 35.0% | |
| TACACCCATTTACATCCTAT+GGG | + | chr1_1:62331539-62331558 | Msa0034380:intron | 35.0% | |
| GAAACCCATAGGATGTAAAT+GGG | - | chr1_1:62331546-62331565 | None:intergenic | 35.0% | |
| AGAAACCCATAGGATGTAAA+TGG | - | chr1_1:62331547-62331566 | None:intergenic | 35.0% | |
| AGCATTAAGCTCATCATTCA+TGG | + | chr1_1:62331613-62331632 | Msa0034380:intron | 35.0% | |
| ACAGCTTCATCAAATCTAGA+TGG | + | chr1_1:62331659-62331678 | Msa0034380:intron | 35.0% | |
| AAATCCTTCAAATAACCTGG+AGG | + | chr1_1:62331803-62331822 | Msa0034380:intron | 35.0% | |
| AAAACCTCCAGGTTATTTGA+AGG | - | chr1_1:62331810-62331829 | None:intergenic | 35.0% | |
| GGGTATAAAATTGGTACCAA+AGG | - | chr1_1:62332121-62332140 | None:intergenic | 35.0% | |
| !! | CAAGGAAGTGCATATTTTTG+GGG | - | chr1_1:62332141-62332160 | None:intergenic | 35.0% |
| !! | GCAAGGAAGTGCATATTTTT+GGG | - | chr1_1:62332142-62332161 | None:intergenic | 35.0% |
| !! | AGCAAGGAAGTGCATATTTT+TGG | - | chr1_1:62332143-62332162 | None:intergenic | 35.0% |
| ACAGACAACCAAAAACCTTA+AGG | + | chr1_1:62332209-62332228 | Msa0034380:intron | 35.0% | |
| AACCAAAAACCTTAAGGTCA+AGG | + | chr1_1:62332215-62332234 | Msa0034380:intron | 35.0% | |
| ! | TTCCTTGACCTTAAGGTTTT+TGG | - | chr1_1:62332220-62332239 | None:intergenic | 35.0% |
| AAAAACCTTAAGGTCAAGGA+AGG | + | chr1_1:62332219-62332238 | Msa0034380:intron | 35.0% | |
| TTGTTATGAATGACAGGAGT+AGG | + | chr1_1:62332277-62332296 | Msa0034380:intron | 35.0% | |
| GATTTGTGATCATTGTCACT+TGG | - | chr1_1:62332779-62332798 | None:intergenic | 35.0% | |
| ! | TAAGATTTTCAGTTGCAGAC+TGG | + | chr1_1:62332950-62332969 | Msa0034380:intron | 35.0% |
| ! | AAGATTTTCAGTTGCAGACT+GGG | + | chr1_1:62332951-62332970 | Msa0034380:intron | 35.0% |
| CATACTCAATCAAACTCCTA+AGG | - | chr1_1:62333025-62333044 | None:intergenic | 35.0% | |
| GAGTTTGATTGAGTATGTAG+AGG | + | chr1_1:62333028-62333047 | Msa0034380:intron | 35.0% | |
| TCGTTATTTGCTTATTACGC+TGG | - | chr1_1:62333243-62333262 | None:intergenic | 35.0% | |
| TCTATTTGGATTCTAGACTC+AGG | - | chr1_1:62333354-62333373 | None:intergenic | 35.0% | |
| TGAGAAGATTTATCAGGTAC+TGG | + | chr1_1:62333478-62333497 | Msa0034380:intron | 35.0% | |
| TTTCTTGATCTATATCCTGG+AGG | + | chr1_1:62333633-62333652 | Msa0034380:intron | 35.0% | |
| TTCTTGATCTATATCCTGGA+GGG | + | chr1_1:62333634-62333653 | Msa0034380:intron | 35.0% | |
| AATAGCAGTTCTCAACAGTA+TGG | + | chr1_1:62333670-62333689 | Msa0034380:intron | 35.0% | |
| CTGAAAACATTGGATTCAGA+AGG | + | chr1_1:62333807-62333826 | Msa0034380:intron | 35.0% | |
| GTCTTAGAAATTGAAGGCAA+AGG | + | chr1_1:62333873-62333892 | Msa0034380:intron | 35.0% | |
| ! | AAGAATTTGGGTTCGAACAT+TGG | + | chr1_1:62333905-62333924 | Msa0034380:intron | 35.0% |
| TTTATATGTACGAACAGAGG+TGG | + | chr1_1:62333977-62333996 | Msa0034380:intron | 35.0% | |
| ! | AATCATTTGGGATGAATTGG+AGG | - | chr1_1:62334057-62334076 | None:intergenic | 35.0% |
| ! | CTTGAAGATCGATTTACCAA+AGG | - | chr1_1:62334170-62334189 | None:intergenic | 35.0% |
| CTTTGGTAAATCGATCTTCA+AGG | + | chr1_1:62334168-62334187 | Msa0034380:intron | 35.0% | |
| TGATCCCAATTATGATCTCT+GGG | - | chr1_1:62334297-62334316 | None:intergenic | 35.0% | |
| TTGATCCCAATTATGATCTC+TGG | - | chr1_1:62334298-62334317 | None:intergenic | 35.0% | |
| TCATAATTGGGATCAAGAAC+TGG | + | chr1_1:62334302-62334321 | Msa0034380:intron | 35.0% | |
| ACGACAACAACTATCACAAT+TGG | - | chr1_1:62334400-62334419 | None:intergenic | 35.0% | |
| TCTATACCCATCATACCTAT+AGG | - | chr1_1:62334895-62334914 | None:intergenic | 35.0% | |
| !! | TATAGGTATGATGGGTATAG+AGG | + | chr1_1:62334894-62334913 | Msa0034380:intron | 35.0% |
| TGGGTATAGAGGAATTATGA+AGG | + | chr1_1:62334905-62334924 | Msa0034380:intron | 35.0% | |
| AGTTTAAGCATGGATTTCCA+TGG | + | chr1_1:62335075-62335094 | Msa0034380:intron | 35.0% | |
| GTTTAAGCATGGATTTCCAT+GGG | + | chr1_1:62335076-62335095 | Msa0034380:intron | 35.0% | |
| ! | TCTCTGCTATGTGGATTAAA+GGG | + | chr1_1:62335196-62335215 | Msa0034380:intron | 35.0% |
| ATAACCTTCTATGACTGCAT+TGG | + | chr1_1:62335262-62335281 | Msa0034380:intron | 35.0% | |
| AGGATGTGAATATTGTGAGA+TGG | - | chr1_1:62335425-62335444 | None:intergenic | 35.0% | |
| ! | AATCAGTGAGTTTTTCCTTG+AGG | + | chr1_1:62335559-62335578 | Msa0034380:intron | 35.0% |
| GATGCCAACATGAGTATTAT+TGG | + | chr1_1:62335596-62335615 | Msa0034380:intron | 35.0% | |
| TGCCAACATGAGTATTATTG+GGG | + | chr1_1:62335598-62335617 | Msa0034380:intron | 35.0% | |
| TTCCCCAATAATACTCATGT+TGG | - | chr1_1:62335603-62335622 | None:intergenic | 35.0% | |
| !!! | ATTGGGGAACACCTTTTTTA+TGG | + | chr1_1:62335614-62335633 | Msa0034380:intron | 35.0% |
| GATAACTTCCAAACAAGTGT+GGG | - | chr1_1:62335643-62335662 | None:intergenic | 35.0% | |
| TGATAACTTCCAAACAAGTG+TGG | - | chr1_1:62335644-62335663 | None:intergenic | 35.0% | |
| CATAGCATCAAAGAAGTCAT+TGG | - | chr1_1:62335672-62335691 | None:intergenic | 35.0% | |
| !! | AATGGCATTGATGGTTTGAT+AGG | - | chr1_1:62335791-62335810 | None:intergenic | 35.0% |
| ! | TTTCATTGGAATGGCATTGA+TGG | - | chr1_1:62335800-62335819 | None:intergenic | 35.0% |
| AATGCCATTCCAATGAAAAG+AGG | + | chr1_1:62335802-62335821 | Msa0034380:intron | 35.0% | |
| ! | GAATCCTCTTTTCATTGGAA+TGG | - | chr1_1:62335809-62335828 | None:intergenic | 35.0% |
| !!! | ACCTTATTTTGTAGAGAGGT+CGG | + | chr1_1:62336090-62336109 | Msa0034380:intron | 35.0% |
| ! | TTTTGTTGAAACTCCTCCAT+TGG | - | chr1_1:62336154-62336173 | None:intergenic | 35.0% |
| !! | CACAAGATTGGCTTCTCATA+TGG | - | chr1_1:62329484-62329503 | None:intergenic | 40.0% |
| ATAGTCTTCAAGGGTTCCTT+TGG | - | chr1_1:62329533-62329552 | None:intergenic | 40.0% | |
| TACTTTGCTGAGCTATCTTC+GGG | - | chr1_1:62329558-62329577 | None:intergenic | 40.0% | |
| GAGTTGGGTTTGAAAGCTTT+GGG | - | chr1_1:62329621-62329640 | None:intergenic | 40.0% | |
| ! | TCTTAACGGGTACAATTCAG+GGG | + | chr1_1:62329912-62329931 | Msa0034380:intron | 40.0% |
| AGATTGCCTTACTAAACCAC+TGG | - | chr1_1:62330217-62330236 | None:intergenic | 40.0% | |
| CTGTCACAGTAAAGAAGAGA+GGG | + | chr1_1:62330378-62330397 | Msa0034380:intron | 40.0% | |
| TTCACAAACTGTAGATGCCA+TGG | + | chr1_1:62330452-62330471 | Msa0034380:intron | 40.0% | |
| AGAAACAGTTGCTTGCTTCT+TGG | + | chr1_1:62330503-62330522 | Msa0034380:intron | 40.0% | |
| !! | TGGGAGAATCATTGATTTCG+TGG | - | chr1_1:62330533-62330552 | None:intergenic | 40.0% |
| AGGGTTCTGTGATTCAGATT+GGG | - | chr1_1:62330604-62330623 | None:intergenic | 40.0% | |
| AAGGGTTCTGTGATTCAGAT+TGG | - | chr1_1:62330605-62330624 | None:intergenic | 40.0% | |
| ATTCTCACCTACAGCTGAAA+GGG | - | chr1_1:62330623-62330642 | None:intergenic | 40.0% | |
| AATTCTCACCTACAGCTGAA+AGG | - | chr1_1:62330624-62330643 | None:intergenic | 40.0% | |
| AGCTGTAGGTGAGAATTAGA+AGG | + | chr1_1:62330627-62330646 | Msa0034380:intron | 40.0% | |
| CATTAAAAGTTCTCCTGCCT+TGG | - | chr1_1:62330664-62330683 | None:intergenic | 40.0% | |
| CTGTCAGCGAAAATATGCAT+TGG | - | chr1_1:62330934-62330953 | None:intergenic | 40.0% | |
| ATCTTGAAATCTCCAATCCG+AGG | + | chr1_1:62330973-62330992 | Msa0034380:intron | 40.0% | |
| GATCAAGGCATGTGACAATT+TGG | + | chr1_1:62331187-62331206 | Msa0034380:intron | 40.0% | |
| GATTTGGAAGAAGTAAGACC+AGG | + | chr1_1:62331275-62331294 | Msa0034380:intron | 40.0% | |
| GTTTACATGAGTTTACCTCC+TGG | - | chr1_1:62331296-62331315 | None:intergenic | 40.0% | |
| ATGATCACAGATCTTCCTCA+AGG | - | chr1_1:62331572-62331591 | None:intergenic | 40.0% | |
| CTCTTCATCTGAACAACACT+TGG | - | chr1_1:62331595-62331614 | None:intergenic | 40.0% | |
| ! | TGAGTCTGTTGTTGACTGTT+AGG | + | chr1_1:62331926-62331945 | Msa0034380:intron | 40.0% |
| AATATGCACTTCCTTGCTCT+TGG | + | chr1_1:62332145-62332164 | Msa0034380:intron | 40.0% | |
| ATATGCACTTCCTTGCTCTT+GGG | + | chr1_1:62332146-62332165 | Msa0034380:intron | 40.0% | |
| ! | TCTGTCATTTGCTAGCACTT+TGG | - | chr1_1:62332194-62332213 | None:intergenic | 40.0% |
| !!! | GGGGTTTTGTTATGAATGAC+AGG | + | chr1_1:62332271-62332290 | Msa0034380:intron | 40.0% |
| GAGTAGGTAATCTGTTGATG+AGG | + | chr1_1:62332293-62332312 | Msa0034380:intron | 40.0% | |
| TCTTCATCAAACCTCTTGTG+TGG | - | chr1_1:62332446-62332465 | None:intergenic | 40.0% | |
| GACCTTTGCAGAAAATTGAG+TGG | + | chr1_1:62332531-62332550 | Msa0034380:intron | 40.0% | |
| ! | CTCCACTCAATTTTCTGCAA+AGG | - | chr1_1:62332536-62332555 | None:intergenic | 40.0% |
| TGCTGCAGAACAGAATTTGA+TGG | + | chr1_1:62332841-62332860 | Msa0034380:intron | 40.0% | |
| GCTGCAGAACAGAATTTGAT+GGG | + | chr1_1:62332842-62332861 | Msa0034380:intron | 40.0% | |
| TTCGGAAAGGAATAACCCTT+AGG | + | chr1_1:62333006-62333025 | Msa0034380:intron | 40.0% | |
| ATACAGAGACTTACCTGTCT+TGG | + | chr1_1:62333380-62333399 | Msa0034380:intron | 40.0% | |
| ! | GTTTCAAGTATTGCCAAGAC+AGG | - | chr1_1:62333396-62333415 | None:intergenic | 40.0% |
| CTTCTGTTATTGTTAGGGTG+TGG | + | chr1_1:62333552-62333571 | Msa0034380:intron | 40.0% | |
| TTATTGTTAGGGTGTGGTGT+TGG | + | chr1_1:62333558-62333577 | Msa0034380:intron | 40.0% | |
| !! | GAGAACTGCTATTTCAAGCA+TGG | - | chr1_1:62333663-62333682 | None:intergenic | 40.0% |
| GAGCATAACATTGAGGTTCT+AGG | + | chr1_1:62333711-62333730 | Msa0034380:intron | 40.0% | |
| GATTCAGAAGGTTGTTCAGT+GGG | + | chr1_1:62333819-62333838 | Msa0034380:intron | 40.0% | |
| AAGTTTGCACGAACAAGGTA+TGG | + | chr1_1:62334001-62334020 | Msa0034380:intron | 40.0% | |
| ! | CACCTTGTTTCATCGAATGA+AGG | + | chr1_1:62334111-62334130 | Msa0034380:intron | 40.0% |
| GACCTTCATTCGATGAAACA+AGG | - | chr1_1:62334116-62334135 | None:intergenic | 40.0% | |
| AATATGAGGGGAAAGAGTTC+TGG | + | chr1_1:62334238-62334257 | Msa0034380:intron | 40.0% | |
| CGATCCCAGAGATCATAATT+GGG | + | chr1_1:62334290-62334309 | Msa0034380:intron | 40.0% | |
| TAATTGGGATCAAGAACTGG+AGG | + | chr1_1:62334305-62334324 | Msa0034380:intron | 40.0% | |
| TCACTAGGATGGAGAAAGTA+TGG | + | chr1_1:62334455-62334474 | Msa0034380:intron | 40.0% | |
| TGAAGAATCTTCTTCAGCCA+TGG | + | chr1_1:62334544-62334563 | Msa0034380:intron | 40.0% | |
| ! | TTAGGGTTTGAAAAGGTGTG+CGG | + | chr1_1:62334595-62334614 | Msa0034380:intron | 40.0% |
| CATTGTCATGTTGAGTACCT+GGG | - | chr1_1:62334866-62334885 | None:intergenic | 40.0% | |
| CAGGTACTCAACATGACAAT+GGG | + | chr1_1:62334865-62334884 | Msa0034380:intron | 40.0% | |
| ! | ATGACAATGGGTTCTCCTAT+AGG | + | chr1_1:62334877-62334896 | Msa0034380:intron | 40.0% |
| GGTTCTCCTATAGGTATGAT+GGG | + | chr1_1:62334886-62334905 | Msa0034380:intron | 40.0% | |
| ATCCATGATGCAATCCATTG+TGG | + | chr1_1:62335039-62335058 | Msa0034380:intron | 40.0% | |
| !! | AACCACAATGGATTGCATCA+TGG | - | chr1_1:62335044-62335063 | None:intergenic | 40.0% |
| ATGATGCAATCCATTGTGGT+TGG | + | chr1_1:62335043-62335062 | Msa0034380:intron | 40.0% | |
| TGATGCAATCCATTGTGGTT+GGG | + | chr1_1:62335044-62335063 | Msa0034380:intron | 40.0% | |
| !! | AAAGTTTTCTACGGGTTGCA+TGG | - | chr1_1:62335124-62335143 | None:intergenic | 40.0% |
| ! | ACGCTGCTAAAGTTTTCTAC+GGG | - | chr1_1:62335132-62335151 | None:intergenic | 40.0% |
| ! | CACGCTGCTAAAGTTTTCTA+CGG | - | chr1_1:62335133-62335152 | None:intergenic | 40.0% |
| ! | GTCTCTGCTATGTGGATTAA+AGG | + | chr1_1:62335195-62335214 | Msa0034380:intron | 40.0% |
| ACAACCAATGCAGTCATAGA+AGG | - | chr1_1:62335269-62335288 | None:intergenic | 40.0% | |
| !! | TTCTATGACTGCATTGGTTG+TGG | + | chr1_1:62335268-62335287 | Msa0034380:intron | 40.0% |
| ACCATATCAACGTCTTCCAA+TGG | + | chr1_1:62335465-62335484 | Msa0034380:intron | 40.0% | |
| ACCATTGGAAGACGTTGATA+TGG | - | chr1_1:62335469-62335488 | None:intergenic | 40.0% | |
| AGTGTGGGACACCATAAAAA+AGG | - | chr1_1:62335628-62335647 | None:intergenic | 40.0% | |
| AACTCCATAGTCTTCATGTC+TGG | + | chr1_1:62335895-62335914 | Msa0034380:intron | 40.0% | |
| ATCTCCAGACATGAAGACTA+TGG | - | chr1_1:62335902-62335921 | None:intergenic | 40.0% | |
| GGATTGCATTTCAAGGCCAA+AGG | + | chr1_1:62329514-62329533 | Msa0034380:CDS | 45.0% | |
| CTTCGGGAGATAGTCTTCAA+GGG | - | chr1_1:62329542-62329561 | None:intergenic | 45.0% | |
| TCTTCGGGAGATAGTCTTCA+AGG | - | chr1_1:62329543-62329562 | None:intergenic | 45.0% | |
| GGAGTTGGGTTTGAAAGCTT+TGG | - | chr1_1:62329622-62329641 | None:intergenic | 45.0% | |
| AAGCTTTCAAACCCAACTCC+AGG | + | chr1_1:62329622-62329641 | Msa0034380:CDS | 45.0% | |
| ATCTACTCTCCAGCTTGAGA+GGG | - | chr1_1:62330147-62330166 | None:intergenic | 45.0% | |
| TGTTTCATCTTCACAGCAGC+TGG | - | chr1_1:62330241-62330260 | None:intergenic | 45.0% | |
| AGCTGCTGTGAAGATGAAAC+AGG | + | chr1_1:62330240-62330259 | Msa0034380:intron | 45.0% | |
| GCTGTCACAGTAAAGAAGAG+AGG | + | chr1_1:62330377-62330396 | Msa0034380:intron | 45.0% | |
| GGAAAAAAAAGTCCCAAGGC+AGG | + | chr1_1:62330648-62330667 | Msa0034380:intron | 45.0% | |
| GGACTCTTATGGCAGATTCA+TGG | + | chr1_1:62330691-62330710 | Msa0034380:intron | 45.0% | |
| GATTCATGGTGAAGAGTGGT+TGG | + | chr1_1:62330705-62330724 | Msa0034380:intron | 45.0% | |
| TAGGATACAGGATCTGCAAG+TGG | + | chr1_1:62330819-62330838 | Msa0034380:intron | 45.0% | |
| !! | AATTTGGTGCCCCTTTGCAT+TGG | + | chr1_1:62330861-62330880 | Msa0034380:intron | 45.0% |
| ! | TTGGATGTTCTAGCTGACAC+AGG | - | chr1_1:62330915-62330934 | None:intergenic | 45.0% |
| AGGATACAAGCCATCCGTTT+CGG | - | chr1_1:62331162-62331181 | None:intergenic | 45.0% | |
| TTGGAAGAAGTAAGACCAGG+AGG | + | chr1_1:62331278-62331297 | Msa0034380:intron | 45.0% | |
| CCTCAAGGTAAGAAACCCAT+AGG | - | chr1_1:62331557-62331576 | None:intergenic | 45.0% | |
| CCTATGGGTTTCTTACCTTG+AGG | + | chr1_1:62331554-62331573 | Msa0034380:intron | 45.0% | |
| ACAAACTTGACCCAAGAGCA+AGG | - | chr1_1:62332159-62332178 | None:intergenic | 45.0% | |
| ACCTTAAGGTCAAGGAAGGT+AGG | + | chr1_1:62332223-62332242 | Msa0034380:intron | 45.0% | |
| TCCTACCTTCCTTGACCTTA+AGG | - | chr1_1:62332227-62332246 | None:intergenic | 45.0% | |
| TTAAGGTCAAGGAAGGTAGG+AGG | + | chr1_1:62332226-62332245 | Msa0034380:intron | 45.0% | |
| GCAGAACAGAATTTGATGGG+TGG | + | chr1_1:62332845-62332864 | Msa0034380:intron | 45.0% | |
| GATGTCTGGCATTATAGGCT+AGG | - | chr1_1:62332871-62332890 | None:intergenic | 45.0% | |
| CAACGACACATCTTCTCACA+TGG | - | chr1_1:62333418-62333437 | None:intergenic | 45.0% | |
| CATGTGAGAAGATGTGTCGT+TGG | + | chr1_1:62333416-62333435 | Msa0034380:intron | 45.0% | |
| TCCTGTTGAAGACTCAAGCT+TGG | + | chr1_1:62333449-62333468 | Msa0034380:intron | 45.0% | |
| TCCAAGCTTGAGTCTTCAAC+AGG | - | chr1_1:62333453-62333472 | None:intergenic | 45.0% | |
| ACAACAACTTGCCCTTGTCA+CGG | - | chr1_1:62333512-62333531 | None:intergenic | 45.0% | |
| !! | TTAGGGTGTGGTGTTGGTTT+AGG | + | chr1_1:62333564-62333583 | Msa0034380:intron | 45.0% |
| GCAGTTGGAGCATAACATTG+AGG | + | chr1_1:62333704-62333723 | Msa0034380:intron | 45.0% | |
| CACAAAGGAAATCATGGCCT+AGG | - | chr1_1:62333756-62333775 | None:intergenic | 45.0% | |
| GCTCAGCACAAAGGAAATCA+TGG | - | chr1_1:62333762-62333781 | None:intergenic | 45.0% | |
| GGATTCAGAAGGTTGTTCAG+TGG | + | chr1_1:62333818-62333837 | Msa0034380:intron | 45.0% | |
| GTGGAAAGTTTGCACGAACA+AGG | + | chr1_1:62333996-62334015 | Msa0034380:intron | 45.0% | |
| GGTATGGCACAAACACAAGA+TGG | + | chr1_1:62334017-62334036 | Msa0034380:intron | 45.0% | |
| GCACAAACACAAGATGGAGT+AGG | + | chr1_1:62334023-62334042 | Msa0034380:intron | 45.0% | |
| CTGGGATCGCTGTAATAACA+TGG | - | chr1_1:62334279-62334298 | None:intergenic | 45.0% | |
| GCGATCCCAGAGATCATAAT+TGG | + | chr1_1:62334289-62334308 | Msa0034380:intron | 45.0% | |
| TAGTTGTTGTCGTTCAGCTG+CGG | + | chr1_1:62334407-62334426 | Msa0034380:intron | 45.0% | |
| ! | TGGAGAAAGTATGGACTACG+CGG | + | chr1_1:62334464-62334483 | Msa0034380:intron | 45.0% |
| ATGGTTCATTGTTTGTGCCC+AGG | + | chr1_1:62334846-62334865 | Msa0034380:intron | 45.0% | |
| CCATTGTCATGTTGAGTACC+TGG | - | chr1_1:62334867-62334886 | None:intergenic | 45.0% | |
| CCAGGTACTCAACATGACAA+TGG | + | chr1_1:62334864-62334883 | Msa0034380:intron | 45.0% | |
| GGGTTCTCCTATAGGTATGA+TGG | + | chr1_1:62334885-62334904 | Msa0034380:intron | 45.0% | |
| GGCATGGTGTAGTTTAAGCA+TGG | + | chr1_1:62335065-62335084 | Msa0034380:intron | 45.0% | |
| GGTTACCCAGAATGTCCAAA+CGG | - | chr1_1:62335103-62335122 | None:intergenic | 45.0% | |
| TGAGAGTTGTCTCTGCTATG+TGG | + | chr1_1:62335187-62335206 | Msa0034380:intron | 45.0% | |
| ! | GTTTTTCCTTGAGGTCCTTG+AGG | + | chr1_1:62335568-62335587 | Msa0034380:intron | 45.0% |
| TATGGTGTCCCACACTTGTT+TGG | + | chr1_1:62335632-62335651 | Msa0034380:intron | 45.0% | |
| !! | GGCATTGATGGTTTGATAGG+TGG | - | chr1_1:62335788-62335807 | None:intergenic | 45.0% |
| GCCGACCTCTCTACAAAATA+AGG | - | chr1_1:62336094-62336113 | None:intergenic | 45.0% | |
| !! | ATTAGTGTCGGCCTCATAGT+CGG | - | chr1_1:62336118-62336137 | None:intergenic | 45.0% |
| GTCAGTGTCTCCATTAGTGT+CGG | - | chr1_1:62336130-62336149 | None:intergenic | 45.0% | |
| AATGGAGACACTGACACCAA+TGG | + | chr1_1:62336135-62336154 | Msa0034380:CDS | 45.0% | |
| ! | TCTTTAGAAGAGTGCAGCCA+AGG | - | chr1_1:62336282-62336301 | None:intergenic | 45.0% |
| CCACAGGCGTTACACAAGAT+TGG | - | chr1_1:62329496-62329515 | None:intergenic | 50.0% | |
| CCAATCTTGTGTAACGCCTG+TGG | + | chr1_1:62329493-62329512 | Msa0034380:CDS | 50.0% | |
| ! | CGCCTGTGGATTGCATTTCA+AGG | + | chr1_1:62329507-62329526 | Msa0034380:CDS | 50.0% |
| GGCCTTGAAATGCAATCCAC+AGG | - | chr1_1:62329512-62329531 | None:intergenic | 50.0% | |
| ACTAATAGGCCCTCTCAAGC+TGG | + | chr1_1:62330135-62330154 | Msa0034380:intron | 50.0% | |
| CATCTACTCTCCAGCTTGAG+AGG | - | chr1_1:62330148-62330167 | None:intergenic | 50.0% | |
| TTGAAAGGAAGAGGGTCCAG+TGG | + | chr1_1:62330198-62330217 | Msa0034380:intron | 50.0% | |
| GAGGGTCCAGTGGTTTAGTA+AGG | + | chr1_1:62330208-62330227 | Msa0034380:intron | 50.0% | |
| AGAAGAGAGGGACTGTCATG+AGG | + | chr1_1:62330390-62330409 | Msa0034380:intron | 50.0% | |
| GAAGAGAGGGACTGTCATGA+GGG | + | chr1_1:62330391-62330410 | Msa0034380:intron | 50.0% | |
| TTCAGATTGGGCAACATGCC+CGG | - | chr1_1:62330592-62330611 | None:intergenic | 50.0% | |
| CACAGAACCCTTTCAGCTGT+AGG | + | chr1_1:62330613-62330632 | Msa0034380:intron | 50.0% | |
| GGCAGATTCATGGTGAAGAG+TGG | + | chr1_1:62330701-62330720 | Msa0034380:intron | 50.0% | |
| AGCAGCCACACCAATGCAAA+GGG | - | chr1_1:62330874-62330893 | None:intergenic | 50.0% | |
| GAAAAGGGAGGGATCCGAAA+CGG | + | chr1_1:62331145-62331164 | Msa0034380:intron | 50.0% | |
| CTTGCTTCCAGCATTCATGC+TGG | + | chr1_1:62331636-62331655 | Msa0034380:intron | 50.0% | |
| AAGCTGTCCAGCATGAATGC+TGG | - | chr1_1:62331646-62331665 | None:intergenic | 50.0% | |
| TTGTGGGGTTTCCACACAAG+AGG | + | chr1_1:62332432-62332451 | Msa0034380:intron | 50.0% | |
| TGCAGACTGGGAATCATCAG+TGG | + | chr1_1:62332963-62332982 | Msa0034380:intron | 50.0% | |
| AACATCCCCAATCGTCCTCT+GGG | + | chr1_1:62333065-62333084 | Msa0034380:intron | 50.0% | |
| ATCTACCCAGAGGACGATTG+GGG | - | chr1_1:62333073-62333092 | None:intergenic | 50.0% | |
| CATCTACCCAGAGGACGATT+GGG | - | chr1_1:62333074-62333093 | None:intergenic | 50.0% | |
| ACATCTACCCAGAGGACGAT+TGG | - | chr1_1:62333075-62333094 | None:intergenic | 50.0% | |
| TTCAGGACACATCTACCCAG+AGG | - | chr1_1:62333083-62333102 | None:intergenic | 50.0% | |
| GATTCTAGACTCAGGAGCCT+CGG | - | chr1_1:62333346-62333365 | None:intergenic | 50.0% | |
| TGGTACTCAGTCCGTGACAA+GGG | + | chr1_1:62333498-62333517 | Msa0034380:intron | 50.0% | |
| TTCAAGCATGGTTTCCCTCC+AGG | - | chr1_1:62333651-62333670 | None:intergenic | 50.0% | |
| CTAGGTAGAGGACGTGGAAA+AGG | - | chr1_1:62333738-62333757 | None:intergenic | 50.0% | |
| ! | CTTTTCCACGTCCTCTACCT+AGG | + | chr1_1:62333736-62333755 | Msa0034380:intron | 50.0% |
| GGAAATCATGGCCTAGGTAG+AGG | - | chr1_1:62333750-62333769 | None:intergenic | 50.0% | |
| TCCTTTGTGCTGAGCAGAAC+TGG | + | chr1_1:62333767-62333786 | Msa0034380:intron | 50.0% | |
| ACCAGTTCTGCTCAGCACAA+AGG | - | chr1_1:62333771-62333790 | None:intergenic | 50.0% | |
| GTGCTGAGCAGAACTGGTAT+TGG | + | chr1_1:62333773-62333792 | Msa0034380:intron | 50.0% | |
| ACAGCACCAGGATTCTCACT+AGG | + | chr1_1:62334440-62334459 | Msa0034380:intron | 50.0% | |
| CACCAGGATTCTCACTAGGA+TGG | + | chr1_1:62334444-62334463 | Msa0034380:intron | 50.0% | |
| CTCCATCCTAGTGAGAATCC+TGG | - | chr1_1:62334449-62334468 | None:intergenic | 50.0% | |
| CAATCCATTGTGGTTGGGCA+TGG | + | chr1_1:62335049-62335068 | Msa0034380:intron | 50.0% | |
| TACACCATGCCCAACCACAA+TGG | - | chr1_1:62335056-62335075 | None:intergenic | 50.0% | |
| TGGATTTCCATGGGTCCGTT+TGG | + | chr1_1:62335085-62335104 | Msa0034380:intron | 50.0% | |
| AGAATGTCCAAACGGACCCA+TGG | - | chr1_1:62335095-62335114 | None:intergenic | 50.0% | |
| ATGGGTCCGTTTGGACATTC+TGG | + | chr1_1:62335094-62335113 | Msa0034380:intron | 50.0% | |
| TGGGTCCGTTTGGACATTCT+GGG | + | chr1_1:62335095-62335114 | Msa0034380:intron | 50.0% | |
| TGTTGGCATCATGCACCTCA+AGG | - | chr1_1:62335586-62335605 | None:intergenic | 50.0% | |
| GACTATGAGGCCGACACTAA+TGG | + | chr1_1:62336117-62336136 | Msa0034380:CDS | 50.0% | |
| CCAAGGCCGATCTCATTACT+TGG | - | chr1_1:62336265-62336284 | None:intergenic | 50.0% | |
| CCAAGTAATGAGATCGGCCT+TGG | + | chr1_1:62336262-62336281 | Msa0034380:CDS | 50.0% | |
| ! | CAGCTATATGGCGTGCTGAC+TGG | + | chr1_1:62330355-62330374 | Msa0034380:intron | 55.0% |
| GCAGCCACACCAATGCAAAG+GGG | - | chr1_1:62330873-62330892 | None:intergenic | 55.0% | |
| CAGCAGCCACACCAATGCAA+AGG | - | chr1_1:62330875-62330894 | None:intergenic | 55.0% | |
| ! | CTTTGCATTGGTGTGGCTGC+TGG | + | chr1_1:62330873-62330892 | Msa0034380:intron | 55.0% |
| !!! | TGGTGTGGCTGCTGGTTTTG+AGG | + | chr1_1:62330881-62330900 | Msa0034380:intron | 55.0% |
| !!! | TGGCTGCTGGTTTTGAGGCA+AGG | + | chr1_1:62330886-62330905 | Msa0034380:intron | 55.0% |
| CAACATCCCCAATCGTCCTC+TGG | + | chr1_1:62333064-62333083 | Msa0034380:intron | 55.0% | |
| ! | GAAAGGGCACACATGATCCG+AGG | + | chr1_1:62333326-62333345 | Msa0034380:intron | 55.0% |
| CTGGTACTCAGTCCGTGACA+AGG | + | chr1_1:62333497-62333516 | Msa0034380:intron | 55.0% | |
| ! | GGGTTTGAAAAGGTGTGCGG+CGG | + | chr1_1:62334598-62334617 | Msa0034380:intron | 55.0% |
| CATGCACCTCAAGGACCTCA+AGG | - | chr1_1:62335577-62335596 | None:intergenic | 55.0% | |
| GGAGACACTGACACCAATGG+AGG | + | chr1_1:62336138-62336157 | Msa0034380:CDS | 55.0% | |
| ! | GGTGCCCCTTTGCATTGGTG+TGG | + | chr1_1:62330866-62330885 | Msa0034380:intron | 60.0% |
| AGGGAGGGATCCGAAACGGA+TGG | + | chr1_1:62331149-62331168 | Msa0034380:intron | 60.0% | |
| CATGGCCTAGGTAGAGGACG+TGG | - | chr1_1:62333744-62333763 | None:intergenic | 60.0% | |
| GGCGAAACGAGAACAGCACC+AGG | + | chr1_1:62334428-62334447 | Msa0034380:intron | 60.0% | |
| GGACTACGCGGATCTTGCGA+CGG | + | chr1_1:62334476-62334495 | Msa0034380:intron | 60.0% | |
| GACTACGCGGATCTTGCGAC+GGG | + | chr1_1:62334477-62334496 | Msa0034380:intron | 60.0% | |
| CGGATCTTGCGACGGGTCTT+TGG | + | chr1_1:62334484-62334503 | Msa0034380:intron | 60.0% | |
| !! | AGAGGTCGGCACCGACTATG+AGG | + | chr1_1:62336104-62336123 | Msa0034380:CDS | 60.0% |
| !! | GGAGGCAGAGTATCGCGCCA+TGG | - | chr1_1:62330472-62330491 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 62329445 | 62336342 | 62329445 | ID=Msa0034380;Name=Msa0034380 |
| chr1_1 | mRNA | 62329445 | 62336342 | 62329445 | ID=Msa0034380-mRNA-1;Parent=Msa0034380;Name=Msa0034380-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0|0|1|1|1|2|0|145 |
| chr1_1 | exon | 62329445 | 62329643 | 62329445 | ID=Msa0034380-mRNA-1:exon:19676;Parent=Msa0034380-mRNA-1 |
| chr1_1 | exon | 62336104 | 62336342 | 62336104 | ID=Msa0034380-mRNA-1:exon:19677;Parent=Msa0034380-mRNA-1 |
| chr1_1 | CDS | 62329445 | 62329643 | 62329445 | ID=Msa0034380-mRNA-1:cds;Parent=Msa0034380-mRNA-1 |
| chr1_1 | CDS | 62336104 | 62336342 | 62336104 | ID=Msa0034380-mRNA-1:cds;Parent=Msa0034380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
