AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0035260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035260 MtrunA17_Chr1g0197591 96.774 1054 30 1 1 1054 1 1050 0.0 2105
Msa0035260 MtrunA17_Chr1g0194741 68.161 647 179 11 3 627 10 651 0.0 839
Msa0035260 MtrunA17_Chr1g0194731 50.219 456 185 10 628 1049 1 448 2.72e-119 374
Msa0035260 MtrunA17_Chr8g0343551 90.476 84 6 1 972 1053 3 86 2.16e-48 166
Msa0035260 MtrunA17_Chr8g0371601 30.297 472 298 11 197 653 280 735 3.11e-43 171
Msa0035260 MtrunA17_Chr8g0371601 38.356 146 72 5 913 1040 1008 1153 6.67e-17 86.3
Msa0035260 MtrunA17_Chr5g0405701 32.808 381 234 9 280 653 408 773 4.14e-42 167
Msa0035260 MtrunA17_Chr5g0405701 38.129 139 63 5 925 1040 1045 1183 1.46e-15 82.0
Msa0035260 MtrunA17_Chr4g0018501 84.848 66 10 0 795 860 1 66 1.18e-33 125
Msa0035260 MtrunA17_Chr8g0377481 28.080 349 213 10 367 693 381 713 3.53e-24 109
Msa0035260 MtrunA17_Chr8g0377481 39.231 130 62 4 930 1049 841 963 1.53e-15 82.0
Msa0035260 MtrunA17_Chr3g0122391 26.590 346 201 12 335 653 399 718 1.23e-21 101
Msa0035260 MtrunA17_Chr3g0122391 32.143 224 98 8 837 1049 840 1020 8.19e-17 85.9
Msa0035260 MtrunA17_Chr8g0392301 26.359 368 224 13 328 662 335 688 2.51e-21 100
Msa0035260 MtrunA17_Chr8g0392301 37.857 140 63 4 927 1049 858 990 1.44e-15 82.0
Msa0035260 MtrunA17_Chr5g0447641 25.948 343 227 9 335 662 576 906 5.40e-20 96.7
Msa0035260 MtrunA17_Chr5g0447641 32.768 177 89 5 896 1049 1039 1208 4.57e-14 77.4
Msa0035260 MtrunA17_Chr3g0136601 29.430 316 180 12 363 648 344 646 1.25e-19 95.1
Msa0035260 MtrunA17_Chr4g0013831 27.760 317 181 11 368 675 334 611 3.08e-16 84.0
Msa0035260 MtrunA17_Chr1g0150511 25.337 371 201 14 337 648 328 681 1.40e-15 82.0
Msa0035260 MtrunA17_Chr7g0269631 25.914 301 179 9 368 662 334 596 7.34e-15 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035260 AT2G47430.1 38.767 1135 568 29 1 1042 9 1109 0.0 673
Msa0035260 AT2G17820.1 30.021 473 296 12 197 653 309 762 1.30e-41 167
Msa0035260 AT2G01830.2 27.548 363 221 11 322 656 414 762 5.07e-26 116
Msa0035260 AT2G01830.2 37.415 147 72 5 916 1049 928 1067 3.97e-14 77.8
Msa0035260 AT2G01830.5 26.720 378 235 11 322 671 403 766 6.07e-26 116
Msa0035260 AT2G01830.5 37.415 147 72 5 916 1049 917 1056 4.77e-14 77.4
Msa0035260 AT2G01830.1 27.548 363 221 11 322 656 391 739 7.37e-26 115
Msa0035260 AT2G01830.1 37.415 147 72 5 916 1049 905 1044 4.54e-14 77.8
Msa0035260 AT2G01830.4 27.548 363 221 11 322 656 391 739 7.37e-26 115
Msa0035260 AT2G01830.4 37.415 147 72 5 916 1049 905 1044 4.54e-14 77.8
Msa0035260 AT2G01830.6 27.548 363 221 11 322 656 391 739 7.37e-26 115
Msa0035260 AT2G01830.6 37.415 147 72 5 916 1049 905 1044 4.54e-14 77.8
Msa0035260 AT2G01830.3 27.548 363 221 11 322 656 391 739 7.37e-26 115
Msa0035260 AT2G01830.3 37.415 147 72 5 916 1049 905 1044 4.54e-14 77.8
Msa0035260 AT1G27320.1 30.233 301 185 9 364 653 436 722 3.84e-25 113
Msa0035260 AT1G27320.1 35.135 148 66 4 930 1054 890 1030 9.12e-14 76.6
Msa0035260 AT5G35750.1 26.667 375 233 11 328 681 539 892 9.15e-23 105
Msa0035260 AT5G35750.1 34.694 147 63 4 927 1049 1032 1169 2.83e-14 78.2
Msa0035260 AT5G10720.1 25.733 307 169 10 363 648 340 608 7.67e-17 86.7
Msa0035260 AT1G66340.1 24.746 295 174 7 368 656 333 585 5.26e-15 80.5
Msa0035260 AT2G40940.1 25.552 317 190 10 352 659 313 592 4.93e-14 77.0

Find 186 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAAGGCCTTTCTTGAATT+TGG 0.083331 1_1:+63387969 None:intergenic
TCCTTATGATTACATCTTAA+TGG 0.135791 1_1:-63387539 Msa0035260:CDS
TGATGTGAGTTACAAGAAAA+TGG 0.185737 1_1:-63389709 Msa0035260:CDS
CACAGACTTGGAATTCTCTT+TGG 0.196997 1_1:+63388789 None:intergenic
ATCCTCCATTTGGATTAAAT+TGG 0.203253 1_1:+63389416 None:intergenic
CTGCTCCCCGATTGATATAT+TGG 0.222353 1_1:-63390393 Msa0035260:CDS
ATGATACTTGTTGCTGTCTT+AGG 0.234879 1_1:-63389657 Msa0035260:CDS
TTTAGGAACGAGCACGTATT+TGG 0.254445 1_1:-63390606 Msa0035260:CDS
CTCACATCAAATCCATTTCT+TGG 0.263424 1_1:+63389723 None:intergenic
ATTTGATTTATCTCATTTCT+TGG 0.272378 1_1:-63389202 Msa0035260:CDS
CTCAAATTGGAAGAGGATTC+TGG 0.275494 1_1:+63388180 None:intergenic
ACAAGATCCAACGCGTTCTA+TGG 0.281119 1_1:-63388851 Msa0035260:CDS
TTCAAATGAATTTGCCTCAT+TGG 0.284914 1_1:-63390753 Msa0035260:CDS
CTCCATTTGCATTCACTGAT+TGG 0.289733 1_1:+63390507 None:intergenic
CGAATTCTTGTAACGTTGTT+TGG 0.301669 1_1:-63387948 Msa0035260:CDS
CAAATGCATTTCTCTCCTTA+TGG 0.302990 1_1:+63389611 None:intergenic
TAGTTGTTGAAGGTCTAAAA+AGG 0.303377 1_1:-63387576 Msa0035260:CDS
GAGCTTAGGGATTAAAGTTA+AGG 0.303708 1_1:-63388283 Msa0035260:CDS
ATTGTTTCATGAAACTATTT+TGG 0.307830 1_1:+63388944 None:intergenic
GACAAGAATATTGGTGAAAA+AGG 0.315509 1_1:-63388573 Msa0035260:CDS
TTTGTCTATCGTGATCTTAC+TGG 0.322255 1_1:-63391487 Msa0035260:intron
AAACATTTGTTGTAGGCATA+TGG 0.326808 1_1:-63391377 Msa0035260:intron
TGTGATAGCGACAAATATAT+TGG 0.330402 1_1:-63387653 Msa0035260:CDS
GTTACTCGTGTCAACCGTTT+AGG 0.332813 1_1:-63390623 Msa0035260:CDS
TGAATTTCTCCTTGATGAAC+AGG 0.334685 1_1:+63387754 None:intergenic
TGCTCCCCGATTGATATATT+GGG 0.349935 1_1:-63390392 Msa0035260:CDS
ACTTGGAATTGTGCAGTCTT+TGG 0.354283 1_1:-63388707 Msa0035260:intron
ACAGACTTGGAATTCTCTTT+GGG 0.355532 1_1:+63388790 None:intergenic
TTTGTTGATGATGATTTCAT+TGG 0.365304 1_1:+63391215 None:intergenic
CTTGTGTACAATCCTCCATT+TGG 0.365899 1_1:+63389406 None:intergenic
GAAATTGTGGACAAGAATAT+TGG 0.368908 1_1:-63388582 Msa0035260:CDS
TCAAATGAATTTGCCTCATT+GGG 0.369330 1_1:-63390752 Msa0035260:CDS
GATAGAAGAGTTTGATACTA+TGG 0.369862 1_1:+63390808 None:intergenic
AAAAGGTTTATGAAGAGCTT+AGG 0.371564 1_1:-63388297 Msa0035260:CDS
ATGTAATCATAAGGAGGATT+AGG 0.374287 1_1:+63387547 None:intergenic
CATCCTGTGAATAATGAAAC+TGG 0.381354 1_1:-63390848 Msa0035260:CDS
GGCTTCCAATTTAATCCAAA+TGG 0.382144 1_1:-63389421 Msa0035260:CDS
GATGTGAGTTACAAGAAAAT+GGG 0.384033 1_1:-63389708 Msa0035260:CDS
AGTTCCCTCTGGTTCAGAAT+TGG 0.385854 1_1:-63389442 Msa0035260:CDS
TCTGCACTTAATGCAATGAT+AGG 0.386989 1_1:+63387301 None:intergenic
AAGCCTGTTCCTTCTTGAAC+AGG 0.387245 1_1:+63388733 None:intergenic
CTTCTTCCTGAGTATGATAA+TGG 0.388629 1_1:-63387820 Msa0035260:CDS
GGAATGAGAAGAACTCAAAT+TGG 0.393399 1_1:+63388167 None:intergenic
GAAGAGGATTCTGGAGAACT+TGG 0.394078 1_1:+63388189 None:intergenic
TATGTTTCAGGTGTATGTTT+TGG 0.398667 1_1:-63389751 Msa0035260:intron
TACAAATGAAGGACACATTA+CGG 0.399866 1_1:-63389019 Msa0035260:CDS
GACACATTACGGTTCGAGCT+TGG 0.407216 1_1:-63389008 Msa0035260:CDS
ACATTTGAAGTTGATGATAC+AGG 0.407290 1_1:-63388823 Msa0035260:CDS
CAGAAGGGCCGCCGTTCAAA+TGG 0.416572 1_1:-63388213 Msa0035260:CDS
AGGGATTCAACATATTCGTT+TGG 0.417204 1_1:-63390555 Msa0035260:CDS
ACAAGGGAAGGTCTTGAGTA+TGG 0.419546 1_1:-63388486 Msa0035260:CDS
GATAGATCGACGACGGTGAC+TGG 0.419905 1_1:-63387274 Msa0035260:CDS
AACATTTGTTGTAGGCATAT+GGG 0.423726 1_1:-63391376 Msa0035260:intron
TCTATTCCCAATATATCAAT+CGG 0.425923 1_1:+63390386 None:intergenic
AAAGGTTTATGAAGAGCTTA+GGG 0.426716 1_1:-63388296 Msa0035260:CDS
AACAAACGACTACCGTGAAA+TGG 0.429963 1_1:+63387856 None:intergenic
ACACATTACGGTTCGAGCTT+GGG 0.431209 1_1:-63389007 Msa0035260:CDS
GAAGTTGATGATACAGGAAA+AGG 0.435566 1_1:-63388817 Msa0035260:CDS
GGCTTTATTGAATGTAATGT+TGG 0.438372 1_1:-63389682 Msa0035260:CDS
CTTGTATTGGACCCTTGTAA+TGG 0.450377 1_1:-63389129 Msa0035260:CDS
GCTGTCAAATTTACAAATGA+AGG 0.451337 1_1:-63389030 Msa0035260:CDS
AATACGTGCTCGTTCCTAAA+CGG 0.454299 1_1:+63390609 None:intergenic
TTCCAATCAGTGAATGCAAA+TGG 0.454437 1_1:-63390509 Msa0035260:CDS
TCATCTAAGTTAGTTCCCTC+TGG 0.459240 1_1:-63389453 Msa0035260:CDS
CGAGAGATGGAGAAGCCGTT+TGG 0.461495 1_1:-63387334 Msa0035260:CDS
ATCTCATTTCTTGGAAGAAG+TGG 0.466158 1_1:-63389193 Msa0035260:CDS
CATATGATACATGGGACTCA+TGG 0.467130 1_1:+63388395 None:intergenic
AATCCTGTTCAAGAAGGAAC+AGG 0.468359 1_1:-63388736 Msa0035260:CDS
ATAAAATATTCGCGCGTGAA+AGG 0.472344 1_1:-63389099 Msa0035260:CDS
TTCTTGTAACGTTGTTTGGT+TGG 0.473169 1_1:-63387944 Msa0035260:CDS
CATCTTGTGGCGATGGAGAA+AGG 0.473755 1_1:-63389159 Msa0035260:CDS
TCTGCTAGAGTCAACAGAAT+AGG 0.474421 1_1:-63390689 Msa0035260:CDS
TCCATTAAGATGTAATCATA+AGG 0.475010 1_1:+63387538 None:intergenic
AGCGTCGGAGGACTTGTAAA+AGG 0.476600 1_1:-63388314 Msa0035260:CDS
ATTATTGAGCTACTTAATGT+TGG 0.477791 1_1:+63388976 None:intergenic
GAAGGAACAGGCTTAGGACT+TGG 0.480156 1_1:-63388724 Msa0035260:CDS
GCTGTAATGCTAGTTGTTGA+AGG 0.480832 1_1:-63387586 Msa0035260:CDS
AGAATAGGAGTGATCTCTCT+TGG 0.481729 1_1:-63390674 Msa0035260:CDS
ACAAATATATTGGTTTCGCT+TGG 0.481740 1_1:-63387643 Msa0035260:CDS
TTACGGTTCGAGCTTGGGCT+CGG 0.484471 1_1:-63389002 Msa0035260:CDS
AGATGTGATTAAGAATTATG+AGG 0.485311 1_1:-63390486 Msa0035260:CDS
GTTCAAGAAGGAACAGGCTT+AGG 0.486350 1_1:-63388730 Msa0035260:CDS
ATCTCATACATTGGAATGGA+AGG 0.489108 1_1:-63390956 Msa0035260:CDS
TTGACTCAAATCTCATACAT+TGG 0.489772 1_1:-63390965 Msa0035260:CDS
ATATGTGCAACTCTAGTCCT+AGG 0.493698 1_1:-63388377 Msa0035260:CDS
ATCATGTCCATTGGTCCACT+TGG 0.496324 1_1:+63390727 None:intergenic
TTACATCTTAATGGATTGCC+AGG 0.496712 1_1:-63387530 Msa0035260:intron
GAAAGGTGTAGATCTTGTAT+TGG 0.497817 1_1:-63389142 Msa0035260:CDS
TTTCCAGTTTCATTATTCAC+AGG 0.508194 1_1:+63390845 None:intergenic
CTATTCCCAATATATCAATC+GGG 0.511465 1_1:+63390387 None:intergenic
GATGGACAAATTCTTGTGGA+AGG 0.513671 1_1:-63390575 Msa0035260:CDS
AGAAGTGCGAACGTCATGGC+TGG 0.516137 1_1:+63389506 None:intergenic
ACGTATTTGGCTACAAAAGA+TGG 0.516355 1_1:-63390593 Msa0035260:CDS
ATTGTATCCAAATTCAAGAA+AGG 0.518521 1_1:-63387976 Msa0035260:CDS
GTTTCATGAAACAATTGTCA+TGG 0.521499 1_1:-63388936 Msa0035260:CDS
GGTCCACTTGGTTCCCAATG+AGG 0.522253 1_1:+63390739 None:intergenic
ACTGTCGAGCAATGTGAGAA+TGG 0.524357 1_1:-63387616 Msa0035260:CDS
CAACAGATGCCGGTGATGGA+TGG 0.525744 1_1:-63387379 Msa0035260:intron
GTCGTATCGAAACCATTTCA+CGG 0.526830 1_1:-63387868 Msa0035260:CDS
ATAGGAATGCGAACACCAAA+CGG 0.527627 1_1:+63387319 None:intergenic
AATTCAACAGATGCCGGTGA+TGG 0.528229 1_1:-63387383 Msa0035260:intron
TTATAGATGGTAGAGCCATA+AGG 0.528325 1_1:-63389626 Msa0035260:CDS
GATTGTACACAAGACTTACT+AGG 0.531693 1_1:-63389396 Msa0035260:intron
ATTGTCATCGATGCAAATGC+AGG 0.532933 1_1:-63388024 Msa0035260:CDS
GACGTTCGCACTTCTCTCGC+AGG 0.533286 1_1:-63389498 Msa0035260:CDS
TTGTAGGTACGTTTGATGCA+TGG 0.535200 1_1:-63388612 Msa0035260:intron
ACACGGGATGCCTCGAGCCT+AGG 0.535731 1_1:+63388360 None:intergenic
ACTCTTCTATCAGCACAAGT+TGG 0.535758 1_1:-63390796 Msa0035260:CDS
CAGGAAGAAGCATTATGACT+TGG 0.536418 1_1:+63387833 None:intergenic
AGAAGAACTCAAATTGGAAG+AGG 0.537572 1_1:+63388173 None:intergenic
ATTCGCGCGTGAAAGGCGAC+AGG 0.538594 1_1:-63389092 Msa0035260:CDS
ATCGACGACGGTGACTGGAA+TGG 0.539077 1_1:-63387269 Msa0035260:CDS
AGTTCCATCCATAAAACTCA+AGG 0.539190 1_1:+63388107 None:intergenic
GATGTGATTAAGAATTATGA+GGG 0.539902 1_1:-63390485 Msa0035260:CDS
TTCCAATTTAATCCAAATGG+AGG 0.540948 1_1:-63389418 Msa0035260:CDS
GCCTCAAATCCATCCATCAC+CGG 0.541835 1_1:+63387370 None:intergenic
ATGGACAAATTCTTGTGGAA+GGG 0.543331 1_1:-63390574 Msa0035260:CDS
TCAAATCTCATACATTGGAA+TGG 0.544839 1_1:-63390960 Msa0035260:CDS
CAGTTTCATTATTCACAGGA+TGG 0.545697 1_1:+63390849 None:intergenic
ACATTTGTTGTAGGCATATG+GGG 0.546061 1_1:-63391375 Msa0035260:intron
TTTCTCTGATATTGAAACCA+AGG 0.546211 1_1:-63391147 Msa0035260:intron
AGAAAATGAATTATGAGATG+TGG 0.547864 1_1:+63388146 None:intergenic
GCCGGTGATGGATGGATTTG+AGG 0.548468 1_1:-63387371 Msa0035260:CDS
GCATGGAGATATTGAAATTG+TGG 0.549187 1_1:-63388595 Msa0035260:CDS
GAATCAATACGATGCATATG+TGG 0.550547 1_1:+63387916 None:intergenic
TTTATAACAGAACCATTACA+AGG 0.553983 1_1:+63389117 None:intergenic
AGTATGATAATGGTAGTGTT+TGG 0.554698 1_1:-63387810 Msa0035260:CDS
ATAATTCTCAAACACAGACT+TGG 0.555719 1_1:+63388777 None:intergenic
AGAGTTGCACATATGATACA+TGG 0.556428 1_1:+63388386 None:intergenic
TATATACCATCTTGTGGCGA+TGG 0.557526 1_1:-63389166 Msa0035260:CDS
TTGGGAACCAAGTGGACCAA+TGG 0.558410 1_1:-63390734 Msa0035260:CDS
GAGAACTTGGGCCATTTGAA+CGG 0.559857 1_1:+63388202 None:intergenic
AAACAAAAGATCATGTCCAT+TGG 0.562534 1_1:+63390718 None:intergenic
TTAACTGTTTAAGATTCTGA+CGG 0.563333 1_1:+63387201 None:intergenic
AGAAATTCTCCTGTTCATCA+AGG 0.565013 1_1:-63387763 Msa0035260:CDS
GAGTTACAAGAAAATGGGAT+TGG 0.568699 1_1:-63389703 Msa0035260:CDS
GAAACTAATCCTGTTCAAGA+AGG 0.570961 1_1:-63388742 Msa0035260:CDS
ACTAGACACAAGCAAAATTG+AGG 0.572699 1_1:-63389253 Msa0035260:CDS
GTGAAATCCATAGAACGCGT+TGG 0.576302 1_1:+63388844 None:intergenic
TTGGAAATGTGGAGCGTCGG+AGG 0.583114 1_1:-63388326 Msa0035260:CDS
AAAAGATGGACAAATTCTTG+TGG 0.588307 1_1:-63390579 Msa0035260:CDS
ACAGGAGAATTTCTAGTGTG+AGG 0.588515 1_1:+63387772 None:intergenic
CTTTCTCCATCGCCACAAGA+TGG 0.589569 1_1:+63389160 None:intergenic
CGAGAGAAGTGCGAACGTCA+TGG 0.591973 1_1:+63389502 None:intergenic
TTATCTCGTTGACACCATGC+TGG 0.594525 1_1:-63391340 Msa0035260:CDS
AAGAGGATTCTGGAGAACTT+GGG 0.597755 1_1:+63388190 None:intergenic
ACACTACCATTATCATACTC+AGG 0.600924 1_1:+63387814 None:intergenic
GTCATGGCTGGCACTAGCAA+CGG 0.603318 1_1:+63389518 None:intergenic
TCATTGGAAATGTGGAGCGT+CGG 0.606149 1_1:-63388329 Msa0035260:CDS
TCCAATGAAAAGAACAACAC+GGG 0.606205 1_1:+63388344 None:intergenic
GGAGAAATTCAAGAATGTGA+AGG 0.608260 1_1:-63387742 Msa0035260:CDS
TCTAGAGGAGATCAAACAGA+AGG 0.608517 1_1:-63388229 Msa0035260:CDS
TGAGGGTACTGTCTCATGCA+AGG 0.611372 1_1:-63390468 Msa0035260:CDS
AGATCTGTTTGATACTCTAG+AGG 0.614609 1_1:-63388244 Msa0035260:CDS
GGTTGATATATACCATCTTG+TGG 0.620294 1_1:-63389172 Msa0035260:CDS
TTCGCGCGTGAAAGGCGACA+GGG 0.625927 1_1:-63389091 Msa0035260:CDS
CAACGTTACAAGAATTCGAA+AGG 0.626525 1_1:+63387953 None:intergenic
AACAATGCGGATACGAGAGA+TGG 0.628920 1_1:-63387347 Msa0035260:CDS
AACTTGGGCCATTTGAACGG+CGG 0.630375 1_1:+63388205 None:intergenic
GGCTGGCACTAGCAACGGCG+AGG 0.632573 1_1:+63389523 None:intergenic
GTTCCATCCATAAAACTCAA+GGG 0.632815 1_1:+63388108 None:intergenic
ATATATCAATCGGGGAGCAG+CGG 0.633343 1_1:+63390396 None:intergenic
CAACTCTAGTCCTAGGCTCG+AGG 0.638163 1_1:-63388370 Msa0035260:CDS
TCAAATGCTTCAAATAACAG+TGG 0.638167 1_1:+63391001 None:intergenic
ACTAGAACTAGTAGCATGAG+TGG 0.643851 1_1:+63388431 None:intergenic
CTAGAGGAGATCAAACAGAA+GGG 0.647360 1_1:-63388228 Msa0035260:CDS
ATTAAGATGTAATCATAAGG+AGG 0.648788 1_1:+63387541 None:intergenic
TTGCCTCATTGGGAACCAAG+TGG 0.650600 1_1:-63390742 Msa0035260:CDS
AGTAACAGTACTCAAGCTCG+AGG 0.651523 1_1:-63388459 Msa0035260:CDS
GACACAAGCAAAATTGAGGT+AGG 0.651627 1_1:-63389249 Msa0035260:CDS
GGAAGCCAATTCTGAACCAG+AGG 0.652862 1_1:+63389437 None:intergenic
TTATAACAGAACCATTACAA+GGG 0.656687 1_1:+63389118 None:intergenic
TCGCGCGTGAAAGGCGACAG+GGG 0.658878 1_1:-63389090 Msa0035260:CDS
AGTAAGATCACGATAGACAA+AGG 0.658954 1_1:+63391489 None:intergenic
GAGTTGCACATATGATACAT+GGG 0.668509 1_1:+63388387 None:intergenic
TATTCCCAATATATCAATCG+GGG 0.669245 1_1:+63390388 None:intergenic
TATGAGATTTGAGTCAAGTG+AGG 0.675699 1_1:+63390971 None:intergenic
GACACCATGCTGGTATGTCA+TGG 0.678223 1_1:-63391330 Msa0035260:CDS
GAAGCCAATTCTGAACCAGA+GGG 0.678300 1_1:+63389438 None:intergenic
TTCCAATGAAAAGAACAACA+CGG 0.680092 1_1:+63388343 None:intergenic
GTAACAGTACTCAAGCTCGA+GGG 0.683337 1_1:-63388458 Msa0035260:CDS
TTTCACCTTCACATAAACTG+AGG 0.692804 1_1:+63388526 None:intergenic
GTGCTCCTCAGTTTATGTGA+AGG 0.712429 1_1:-63388531 Msa0035260:CDS
AGATATTGATAGATCGACGA+CGG 0.744930 1_1:-63387281 Msa0035260:CDS
GTTACCATGACATACCAGCA+TGG 0.776680 1_1:+63391326 None:intergenic
ATGGATTTGAGGCAACAATG+CGG 0.777417 1_1:-63387360 Msa0035260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATGATTAATCATTTTT+GGG + chr1_1:63388871-63388890 None:intergenic 10.0%
!!! ATAAAATGATTAATCATTTT+TGG + chr1_1:63388872-63388891 None:intergenic 10.0%
!! AATACTTTAAATTAAGTTAA+AGG - chr1_1:63389345-63389364 Msa0035260:intron 10.0%
!!! AAAATGATTAATCATTTTTG+GGG + chr1_1:63388870-63388889 None:intergenic 15.0%
!!! ATTTTCTTCTTATTTTTTGT+AGG - chr1_1:63390074-63390093 Msa0035260:intron 15.0%
!!! GATTTTAATGTTTGTTTTGT+AGG - chr1_1:63387673-63387692 Msa0035260:CDS 20.0%
!!! ACTGATGTATTACAATTTTA+GGG + chr1_1:63388441-63388460 None:intergenic 20.0%
!!! AGTTGTCTATTATAATTTGT+TGG - chr1_1:63388566-63388585 Msa0035260:CDS 20.0%
!!! GTTGTCTATTATAATTTGTT+GGG - chr1_1:63388567-63388586 Msa0035260:CDS 20.0%
!! TTAACTATTGAACTTTATAG+AGG - chr1_1:63388758-63388777 Msa0035260:CDS 20.0%
!! TAACTATTGAACTTTATAGA+GGG - chr1_1:63388759-63388778 Msa0035260:CDS 20.0%
!! AAAAGATTAGAAGAATGAAT+AGG + chr1_1:63388798-63388817 None:intergenic 20.0%
!!! TTAGGTTTTCTATTTATAGA+TGG - chr1_1:63389063-63389082 Msa0035260:CDS 20.0%
!!! TTTGTTCATATTTTTTCTCT+CGG + chr1_1:63389157-63389176 None:intergenic 20.0%
!!! AACTTAATTTAAAGTATTCC+AGG + chr1_1:63389343-63389362 None:intergenic 20.0%
!!! ATTTGATTTATCTCATTTCT+TGG - chr1_1:63389500-63389519 Msa0035260:CDS 20.0%
!!! ATTGTTTCATGAAACTATTT+TGG + chr1_1:63389761-63389780 None:intergenic 20.0%
!!! TTTGTTATCTTTATCAAACT+TGG - chr1_1:63391237-63391256 Msa0035260:CDS 20.0%
!! TTGTTATCTTTATCAAACTT+GGG - chr1_1:63391238-63391257 Msa0035260:CDS 20.0%
! TAAACACATTCAGTGTATAA+GGG + chr1_1:63387303-63387322 None:intergenic 25.0%
! TTAAACACATTCAGTGTATA+AGG + chr1_1:63387304-63387323 None:intergenic 25.0%
!!! GTTTAACAAACATTTGTTGT+AGG - chr1_1:63387318-63387337 Msa0035260:CDS 25.0%
!!! TTTGTTGATGATGATTTCAT+TGG + chr1_1:63387490-63387509 None:intergenic 25.0%
!! AATGAAACTGGAAAAGTTTT+TGG - chr1_1:63387866-63387885 Msa0035260:CDS 25.0%
! AGATGTGATTAAGAATTATG+AGG - chr1_1:63388216-63388235 Msa0035260:CDS 25.0%
! GATGTGATTAAGAATTATGA+GGG - chr1_1:63388217-63388236 Msa0035260:CDS 25.0%
! TCTATTCCCAATATATCAAT+CGG + chr1_1:63388319-63388338 None:intergenic 25.0%
!! GACTGATGTATTACAATTTT+AGG + chr1_1:63388442-63388461 None:intergenic 25.0%
! ATAATAGACAACTTCTTCTT+TGG + chr1_1:63388559-63388578 None:intergenic 25.0%
!!! TTTCTATTGGATTTTGGTTA+GGG + chr1_1:63388627-63388646 None:intergenic 25.0%
!!! TTTTCTATTGGATTTTGGTT+AGG + chr1_1:63388628-63388647 None:intergenic 25.0%
!! TACTTAACGTGATTTTCTAT+TGG + chr1_1:63388640-63388659 None:intergenic 25.0%
! GAAAATCACGTTAAGTAATA+TGG - chr1_1:63388643-63388662 Msa0035260:intron 25.0%
! CTCTAATTTGATTATGTTTC+AGG - chr1_1:63388939-63388958 Msa0035260:CDS 25.0%
!! TTAATTTAAAGTATTCCAGG+TGG + chr1_1:63389340-63389359 None:intergenic 25.0%
! TTATAACAGAACCATTACAA+GGG + chr1_1:63389587-63389606 None:intergenic 25.0%
! TTTATAACAGAACCATTACA+AGG + chr1_1:63389588-63389607 None:intergenic 25.0%
! ATTATTGAGCTACTTAATGT+TGG + chr1_1:63389729-63389748 None:intergenic 25.0%
!!! TTTCATGAAACTATTTTGGT+TGG + chr1_1:63389757-63389776 None:intergenic 25.0%
! AGAAAATGAATTATGAGATG+TGG + chr1_1:63390559-63390578 None:intergenic 25.0%
!!! AATTCATTTTCTAGAGCTAA+AGG - chr1_1:63390567-63390586 Msa0035260:CDS 25.0%
!! AAATTCATCTTTTTGAACAC+TGG + chr1_1:63390633-63390652 None:intergenic 25.0%
!! GTGTTCAAAAAGATGAATTT+TGG - chr1_1:63390633-63390652 Msa0035260:CDS 25.0%
! ATTGTATCCAAATTCAAGAA+AGG - chr1_1:63390726-63390745 Msa0035260:CDS 25.0%
!!! GTCATTTTGATCAATTATTC+TGG + chr1_1:63390811-63390830 None:intergenic 25.0%
! ATTAAGATGTAATCATAAGG+AGG + chr1_1:63391164-63391183 None:intergenic 25.0%
! TCCTTATGATTACATCTTAA+TGG - chr1_1:63391163-63391182 Msa0035260:CDS 25.0%
! TCCATTAAGATGTAATCATA+AGG + chr1_1:63391167-63391186 None:intergenic 25.0%
! GATAAAGATAACAAAAGAAG+AGG + chr1_1:63391232-63391251 None:intergenic 25.0%
!! TTAACTGTTTAAGATTCTGA+CGG + chr1_1:63391504-63391523 None:intergenic 25.0%
ATTCAGTGTATAAGGGTTAA+TGG + chr1_1:63387296-63387315 None:intergenic 30.0%
!! AAACATTTGTTGTAGGCATA+TGG - chr1_1:63387325-63387344 Msa0035260:CDS 30.0%
!! AACATTTGTTGTAGGCATAT+GGG - chr1_1:63387326-63387345 Msa0035260:CDS 30.0%
TTTCTCTGATATTGAAACCA+AGG - chr1_1:63387555-63387574 Msa0035260:CDS 30.0%
TCAAATGCTTCAAATAACAG+TGG + chr1_1:63387704-63387723 None:intergenic 30.0%
TTGACTCAAATCTCATACAT+TGG - chr1_1:63387737-63387756 Msa0035260:CDS 30.0%
TCAAATCTCATACATTGGAA+TGG - chr1_1:63387742-63387761 Msa0035260:CDS 30.0%
TTTCCAGTTTCATTATTCAC+AGG + chr1_1:63387860-63387879 None:intergenic 30.0%
GATAGAAGAGTTTGATACTA+TGG + chr1_1:63387897-63387916 None:intergenic 30.0%
TTCAAATGAATTTGCCTCAT+TGG - chr1_1:63387949-63387968 Msa0035260:CDS 30.0%
TCAAATGAATTTGCCTCATT+GGG - chr1_1:63387950-63387969 Msa0035260:CDS 30.0%
AAACAAAAGATCATGTCCAT+TGG + chr1_1:63387987-63388006 None:intergenic 30.0%
AAAAGATGGACAAATTCTTG+TGG - chr1_1:63388123-63388142 Msa0035260:CDS 30.0%
TATTCCCAATATATCAATCG+GGG + chr1_1:63388317-63388336 None:intergenic 30.0%
CTATTCCCAATATATCAATC+GGG + chr1_1:63388318-63388337 None:intergenic 30.0%
! TCATAGATTAATTTGACCGA+TGG + chr1_1:63388395-63388414 None:intergenic 30.0%
! CGTGATTTTCTATTGGATTT+TGG + chr1_1:63388633-63388652 None:intergenic 30.0%
TGTAACTATGCGACTAAAAT+AGG - chr1_1:63388819-63388838 Msa0035260:CDS 30.0%
!!! TATGCCATTTTATTTAGCAC+TGG - chr1_1:63388891-63388910 Msa0035260:CDS 30.0%
!!! ATGCCATTTTATTTAGCACT+GGG - chr1_1:63388892-63388911 Msa0035260:CDS 30.0%
!! TATGTTTCAGGTGTATGTTT+TGG - chr1_1:63388951-63388970 Msa0035260:CDS 30.0%
TGATGTGAGTTACAAGAAAA+TGG - chr1_1:63388993-63389012 Msa0035260:CDS 30.0%
GATGTGAGTTACAAGAAAAT+GGG - chr1_1:63388994-63389013 Msa0035260:CDS 30.0%
!! GGCTTTATTGAATGTAATGT+TGG - chr1_1:63389020-63389039 Msa0035260:CDS 30.0%
!! CTCTTTTTGTTTGATAAGTG+AGG + chr1_1:63389121-63389140 None:intergenic 30.0%
CTCACTTATCAAACAAAAAG+AGG - chr1_1:63389119-63389138 Msa0035260:CDS 30.0%
TTCCAATTTAATCCAAATGG+AGG - chr1_1:63389284-63389303 Msa0035260:intron 30.0%
ATCCTCCATTTGGATTAAAT+TGG + chr1_1:63389289-63389308 None:intergenic 30.0%
CAAAATTGAGGTAGGAAAAA+TGG - chr1_1:63389461-63389480 Msa0035260:CDS 30.0%
GCTGTCAAATTTACAAATGA+AGG - chr1_1:63389672-63389691 Msa0035260:CDS 30.0%
TACAAATGAAGGACACATTA+CGG - chr1_1:63389683-63389702 Msa0035260:CDS 30.0%
GTTTCATGAAACAATTGTCA+TGG - chr1_1:63389766-63389785 Msa0035260:intron 30.0%
GAAAAAAAATGAACCAGATG+AGG - chr1_1:63389800-63389819 Msa0035260:intron 30.0%
!! ACATTTGAAGTTGATGATAC+AGG - chr1_1:63389879-63389898 Msa0035260:intron 30.0%
ATAATTCTCAAACACAGACT+TGG + chr1_1:63389928-63389947 None:intergenic 30.0%
GAAATTGTGGACAAGAATAT+TGG - chr1_1:63390120-63390139 Msa0035260:intron 30.0%
GACAAGAATATTGGTGAAAA+AGG - chr1_1:63390129-63390148 Msa0035260:intron 30.0%
! GTGAAAAAGGAACATGTTTT+CGG - chr1_1:63390142-63390161 Msa0035260:intron 30.0%
TTCCAATGAAAAGAACAACA+CGG + chr1_1:63390362-63390381 None:intergenic 30.0%
! TGTTCTTTTCATTGGAAATG+TGG - chr1_1:63390365-63390384 Msa0035260:intron 30.0%
AAAAGGTTTATGAAGAGCTT+AGG - chr1_1:63390405-63390424 Msa0035260:CDS 30.0%
AAAGGTTTATGAAGAGCTTA+GGG - chr1_1:63390406-63390425 Msa0035260:CDS 30.0%
! TCATCATTTTCTGAACTCTT+TGG - chr1_1:63390702-63390721 Msa0035260:CDS 30.0%
!! AGTATGATAATGGTAGTGTT+TGG - chr1_1:63390892-63390911 Msa0035260:CDS 30.0%
AAAAACTTCTTGCAATGCAA+AGG + chr1_1:63391002-63391021 None:intergenic 30.0%
! TGTGATAGCGACAAATATAT+TGG - chr1_1:63391049-63391068 Msa0035260:intron 30.0%
!! ACAAATATATTGGTTTCGCT+TGG - chr1_1:63391059-63391078 Msa0035260:intron 30.0%
TAGTTGTTGAAGGTCTAAAA+AGG - chr1_1:63391126-63391145 Msa0035260:intron 30.0%
AGTTGTTGAAGGTCTAAAAA+GGG - chr1_1:63391127-63391146 Msa0035260:intron 30.0%
ATGTAATCATAAGGAGGATT+AGG + chr1_1:63391158-63391177 None:intergenic 30.0%
! AGTAAATGCTCTTTTCTAAG+TGG + chr1_1:63391476-63391495 None:intergenic 30.0%
AGTAAGATCACGATAGACAA+AGG + chr1_1:63387216-63387235 None:intergenic 35.0%
TTTGTCTATCGTGATCTTAC+TGG - chr1_1:63387215-63387234 Msa0035260:CDS 35.0%
!! ACATTTGTTGTAGGCATATG+GGG - chr1_1:63387327-63387346 Msa0035260:CDS 35.0%
TTCATGTTTGAAGAGAACCT+TGG + chr1_1:63387575-63387594 None:intergenic 35.0%
TATGAGATTTGAGTCAAGTG+AGG + chr1_1:63387734-63387753 None:intergenic 35.0%
ATCTCATACATTGGAATGGA+AGG - chr1_1:63387746-63387765 Msa0035260:CDS 35.0%
CAGTTTCATTATTCACAGGA+TGG + chr1_1:63387856-63387875 None:intergenic 35.0%
CATCCTGTGAATAATGAAAC+TGG - chr1_1:63387854-63387873 Msa0035260:CDS 35.0%
ACGTATTTGGCTACAAAAGA+TGG - chr1_1:63388109-63388128 Msa0035260:CDS 35.0%
ATGGACAAATTCTTGTGGAA+GGG - chr1_1:63388128-63388147 Msa0035260:CDS 35.0%
AGGGATTCAACATATTCGTT+TGG - chr1_1:63388147-63388166 Msa0035260:CDS 35.0%
TTCCAATCAGTGAATGCAAA+TGG - chr1_1:63388193-63388212 Msa0035260:CDS 35.0%
GTCCTTGAAATTGTATCCAT+CGG - chr1_1:63388376-63388395 Msa0035260:CDS 35.0%
!! AATTTGTTGGGTAAAAGCCT+AGG - chr1_1:63388579-63388598 Msa0035260:CDS 35.0%
ACATTGAGAAAGTAACTCCT+AGG + chr1_1:63388599-63388618 None:intergenic 35.0%
GTTATAAAGTGCAGTAGTGT+AGG - chr1_1:63388841-63388860 Msa0035260:CDS 35.0%
!!! TGCCATTTTATTTAGCACTG+GGG - chr1_1:63388893-63388912 Msa0035260:CDS 35.0%
CTCACATCAAATCCATTTCT+TGG + chr1_1:63388982-63389001 None:intergenic 35.0%
GAGTTACAAGAAAATGGGAT+TGG - chr1_1:63388999-63389018 Msa0035260:CDS 35.0%
! ATGATACTTGTTGCTGTCTT+AGG - chr1_1:63389045-63389064 Msa0035260:CDS 35.0%
TTATAGATGGTAGAGCCATA+AGG - chr1_1:63389076-63389095 Msa0035260:CDS 35.0%
CAAATGCATTTCTCTCCTTA+TGG + chr1_1:63389094-63389113 None:intergenic 35.0%
!!! TCATATTTTTTCTCTCGGCT+TGG + chr1_1:63389152-63389171 None:intergenic 35.0%
GGCTTCCAATTTAATCCAAA+TGG - chr1_1:63389281-63389300 Msa0035260:intron 35.0%
GATTGTACACAAGACTTACT+AGG - chr1_1:63389306-63389325 Msa0035260:intron 35.0%
! CTTTGTGTACGATTTTGCTT+AGG - chr1_1:63389411-63389430 Msa0035260:CDS 35.0%
ACTAGACACAAGCAAAATTG+AGG - chr1_1:63389449-63389468 Msa0035260:CDS 35.0%
ATCTCATTTCTTGGAAGAAG+TGG - chr1_1:63389509-63389528 Msa0035260:CDS 35.0%
! GGTTGATATATACCATCTTG+TGG - chr1_1:63389530-63389549 Msa0035260:CDS 35.0%
! GAAAGGTGTAGATCTTGTAT+TGG - chr1_1:63389560-63389579 Msa0035260:CDS 35.0%
ATAAAATATTCGCGCGTGAA+AGG - chr1_1:63389603-63389622 Msa0035260:CDS 35.0%
!!! GTTTTTTCTATGTCCTCATC+TGG + chr1_1:63389816-63389835 None:intergenic 35.0%
!! GAAGTTGATGATACAGGAAA+AGG - chr1_1:63389885-63389904 Msa0035260:intron 35.0%
ACAGACTTGGAATTCTCTTT+GGG + chr1_1:63389915-63389934 None:intergenic 35.0%
GAAACTAATCCTGTTCAAGA+AGG - chr1_1:63389960-63389979 Msa0035260:intron 35.0%
GCATGGAGATATTGAAATTG+TGG - chr1_1:63390107-63390126 Msa0035260:intron 35.0%
TTTCACCTTCACATAAACTG+AGG + chr1_1:63390179-63390198 None:intergenic 35.0%
!! AGTGACAGATTTTAGCACAA+GGG - chr1_1:63390200-63390219 Msa0035260:intron 35.0%
GAGTTGCACATATGATACAT+GGG + chr1_1:63390318-63390337 None:intergenic 35.0%
AGAGTTGCACATATGATACA+TGG + chr1_1:63390319-63390338 None:intergenic 35.0%
TCCAATGAAAAGAACAACAC+GGG + chr1_1:63390361-63390380 None:intergenic 35.0%
GAGCTTAGGGATTAAAGTTA+AGG - chr1_1:63390419-63390438 Msa0035260:CDS 35.0%
AGATCTGTTTGATACTCTAG+AGG - chr1_1:63390458-63390477 Msa0035260:CDS 35.0%
AGAAGAACTCAAATTGGAAG+AGG + chr1_1:63390532-63390551 None:intergenic 35.0%
GGAATGAGAAGAACTCAAAT+TGG + chr1_1:63390538-63390557 None:intergenic 35.0%
GTTCCATCCATAAAACTCAA+GGG + chr1_1:63390597-63390616 None:intergenic 35.0%
AGTTCCATCCATAAAACTCA+AGG + chr1_1:63390598-63390617 None:intergenic 35.0%
CAACGTTACAAGAATTCGAA+AGG + chr1_1:63390752-63390771 None:intergenic 35.0%
CGAATTCTTGTAACGTTGTT+TGG - chr1_1:63390754-63390773 Msa0035260:CDS 35.0%
TTCTTGTAACGTTGTTTGGT+TGG - chr1_1:63390758-63390777 Msa0035260:CDS 35.0%
GAATCAATACGATGCATATG+TGG + chr1_1:63390789-63390808 None:intergenic 35.0%
CTTCTTCCTGAGTATGATAA+TGG - chr1_1:63390882-63390901 Msa0035260:CDS 35.0%
ACACTACCATTATCATACTC+AGG + chr1_1:63390891-63390910 None:intergenic 35.0%
AGAAATTCTCCTGTTCATCA+AGG - chr1_1:63390939-63390958 Msa0035260:CDS 35.0%
TGAATTTCTCCTTGATGAAC+AGG + chr1_1:63390951-63390970 None:intergenic 35.0%
GGAGAAATTCAAGAATGTGA+AGG - chr1_1:63390960-63390979 Msa0035260:CDS 35.0%
!! CAAGAAGTTTTTGATTGTCG+AGG - chr1_1:63391010-63391029 Msa0035260:CDS 35.0%
!! TTACATCTTAATGGATTGCC+AGG - chr1_1:63391172-63391191 Msa0035260:CDS 35.0%
TAAACGAATTCAACAGATGC+CGG - chr1_1:63391313-63391332 Msa0035260:CDS 35.0%
TCTGCACTTAATGCAATGAT+AGG + chr1_1:63391404-63391423 None:intergenic 35.0%
AGATATTGATAGATCGACGA+CGG - chr1_1:63391421-63391440 Msa0035260:intron 35.0%
ACTCTTCTATCAGCACAAGT+TGG - chr1_1:63387906-63387925 Msa0035260:CDS 40.0%
TCTGCTAGAGTCAACAGAAT+AGG - chr1_1:63388013-63388032 Msa0035260:CDS 40.0%
AGAATAGGAGTGATCTCTCT+TGG - chr1_1:63388028-63388047 Msa0035260:CDS 40.0%
AATACGTGCTCGTTCCTAAA+CGG + chr1_1:63388096-63388115 None:intergenic 40.0%
TTTAGGAACGAGCACGTATT+TGG - chr1_1:63388096-63388115 Msa0035260:CDS 40.0%
GATGGACAAATTCTTGTGGA+AGG - chr1_1:63388127-63388146 Msa0035260:CDS 40.0%
CTCCATTTGCATTCACTGAT+TGG + chr1_1:63388198-63388217 None:intergenic 40.0%
TGCTCCCCGATTGATATATT+GGG - chr1_1:63388310-63388329 Msa0035260:CDS 40.0%
GACCGATGGATACAATTTCA+AGG + chr1_1:63388381-63388400 None:intergenic 40.0%
CACTTTCATCCCTATAGATG+CGG - chr1_1:63388674-63388693 Msa0035260:intron 40.0%
TGAAGATGTGACACTTCATG+TGG + chr1_1:63388714-63388733 None:intergenic 40.0%
!! GCCATTTTATTTAGCACTGG+GGG - chr1_1:63388894-63388913 Msa0035260:CDS 40.0%
TCCCCCAGTGCTAAATAAAA+TGG + chr1_1:63388898-63388917 None:intergenic 40.0%
! TTTATTTAGCACTGGGGGAA+TGG - chr1_1:63388899-63388918 Msa0035260:CDS 40.0%
!!! GTTTTGGCTGTACCAAGAAA+TGG - chr1_1:63388967-63388986 Msa0035260:CDS 40.0%
TCATCTAAGTTAGTTCCCTC+TGG - chr1_1:63389249-63389268 Msa0035260:CDS 40.0%
CTTGTGTACAATCCTCCATT+TGG + chr1_1:63389299-63389318 None:intergenic 40.0%
GACACAAGCAAAATTGAGGT+AGG - chr1_1:63389453-63389472 Msa0035260:CDS 40.0%
GGTAGGAAAAATGGAACTTG+TGG - chr1_1:63389470-63389489 Msa0035260:CDS 40.0%
TATATACCATCTTGTGGCGA+TGG - chr1_1:63389536-63389555 Msa0035260:CDS 40.0%
CTTGTATTGGACCCTTGTAA+TGG - chr1_1:63389573-63389592 Msa0035260:CDS 40.0%
CACAGACTTGGAATTCTCTT+TGG + chr1_1:63389916-63389935 None:intergenic 40.0%
AATCCTGTTCAAGAAGGAAC+AGG - chr1_1:63389966-63389985 Msa0035260:intron 40.0%
ACTTGGAATTGTGCAGTCTT+TGG - chr1_1:63389995-63390014 Msa0035260:intron 40.0%
TTGTAGGTACGTTTGATGCA+TGG - chr1_1:63390090-63390109 Msa0035260:intron 40.0%
!! CAGTGACAGATTTTAGCACA+AGG - chr1_1:63390199-63390218 Msa0035260:intron 40.0%
!! ACAGATTTTAGCACAAGGGA+AGG - chr1_1:63390204-63390223 Msa0035260:intron 40.0%
ACTAGAACTAGTAGCATGAG+TGG + chr1_1:63390274-63390293 None:intergenic 40.0%
CATATGATACATGGGACTCA+TGG + chr1_1:63390310-63390329 None:intergenic 40.0%
ATATGTGCAACTCTAGTCCT+AGG - chr1_1:63390325-63390344 Msa0035260:intron 40.0%
!! TCCCGTGTTGTTCTTTTCAT+TGG - chr1_1:63390357-63390376 Msa0035260:intron 40.0%
TCTAGAGGAGATCAAACAGA+AGG - chr1_1:63390473-63390492 Msa0035260:CDS 40.0%
CTAGAGGAGATCAAACAGAA+GGG - chr1_1:63390474-63390493 Msa0035260:CDS 40.0%
! AAGAGGATTCTGGAGAACTT+GGG + chr1_1:63390515-63390534 None:intergenic 40.0%
CTCAAATTGGAAGAGGATTC+TGG + chr1_1:63390525-63390544 None:intergenic 40.0%
! AGGTGTTCCCTTGAGTTTTA+TGG - chr1_1:63390587-63390606 Msa0035260:CDS 40.0%
!! GTTCCCTTGAGTTTTATGGA+TGG - chr1_1:63390591-63390610 Msa0035260:CDS 40.0%
ATTGTCATCGATGCAAATGC+AGG - chr1_1:63390678-63390697 Msa0035260:CDS 40.0%
CGAAAGGCCTTTCTTGAATT+TGG + chr1_1:63390736-63390755 None:intergenic 40.0%
GTCGTATCGAAACCATTTCA+CGG - chr1_1:63390834-63390853 Msa0035260:CDS 40.0%
AACAAACGACTACCGTGAAA+TGG + chr1_1:63390849-63390868 None:intergenic 40.0%
!! CAGGAAGAAGCATTATGACT+TGG + chr1_1:63390872-63390891 None:intergenic 40.0%
!! ACAGGAGAATTTCTAGTGTG+AGG + chr1_1:63390933-63390952 None:intergenic 40.0%
GCTGTAATGCTAGTTGTTGA+AGG - chr1_1:63391116-63391135 Msa0035260:intron 40.0%
ATTGCCAGGTATAATGACCA+TGG - chr1_1:63391186-63391205 Msa0035260:CDS 40.0%
AGAAATCAAACCACAGTCCA+TGG + chr1_1:63391206-63391225 None:intergenic 40.0%
! ATGGATTTGAGGCAACAATG+CGG - chr1_1:63391342-63391361 Msa0035260:CDS 40.0%
ATAGGAATGCGAACACCAAA+CGG + chr1_1:63391386-63391405 None:intergenic 40.0%
TTATCTCGTTGACACCATGC+TGG - chr1_1:63387362-63387381 Msa0035260:CDS 45.0%
GTTACCATGACATACCAGCA+TGG + chr1_1:63387379-63387398 None:intergenic 45.0%
ATCATGTCCATTGGTCCACT+TGG + chr1_1:63387978-63387997 None:intergenic 45.0%
GTTACTCGTGTCAACCGTTT+AGG - chr1_1:63388079-63388098 Msa0035260:CDS 45.0%
ATATATCAATCGGGGAGCAG+CGG + chr1_1:63388309-63388328 None:intergenic 45.0%
CTGCTCCCCGATTGATATAT+TGG - chr1_1:63388309-63388328 Msa0035260:CDS 45.0%
TGAAGATGTGTCAGTCCACA+TGG - chr1_1:63388517-63388536 Msa0035260:CDS 45.0%
ACATCACTGCCGCATCTATA+GGG + chr1_1:63388686-63388705 None:intergenic 45.0%
! AGTTCCCTCTGGTTCAGAAT+TGG - chr1_1:63389260-63389279 Msa0035260:CDS 45.0%
GAAGCCAATTCTGAACCAGA+GGG + chr1_1:63389267-63389286 None:intergenic 45.0%
TACTAGGTAAACACTCCACC+TGG - chr1_1:63389322-63389341 Msa0035260:intron 45.0%
ACACATTACGGTTCGAGCTT+GGG - chr1_1:63389695-63389714 Msa0035260:CDS 45.0%
ACAAGATCCAACGCGTTCTA+TGG - chr1_1:63389851-63389870 Msa0035260:intron 45.0%
GTGAAATCCATAGAACGCGT+TGG + chr1_1:63389861-63389880 None:intergenic 45.0%
AAGCCTGTTCCTTCTTGAAC+AGG + chr1_1:63389972-63389991 None:intergenic 45.0%
GTTCAAGAAGGAACAGGCTT+AGG - chr1_1:63389972-63389991 Msa0035260:intron 45.0%
GGAATTGTGCAGTCTTTGGT+AGG - chr1_1:63389999-63390018 Msa0035260:intron 45.0%
GTGCTCCTCAGTTTATGTGA+AGG - chr1_1:63390171-63390190 Msa0035260:intron 45.0%
ACAAGGGAAGGTCTTGAGTA+TGG - chr1_1:63390216-63390235 Msa0035260:intron 45.0%
AGTAACAGTACTCAAGCTCG+AGG - chr1_1:63390243-63390262 Msa0035260:intron 45.0%
GTAACAGTACTCAAGCTCGA+GGG - chr1_1:63390244-63390263 Msa0035260:intron 45.0%
TCATTGGAAATGTGGAGCGT+CGG - chr1_1:63390373-63390392 Msa0035260:intron 45.0%
GAGAACTTGGGCCATTTGAA+CGG + chr1_1:63390503-63390522 None:intergenic 45.0%
! GAAGAGGATTCTGGAGAACT+TGG + chr1_1:63390516-63390535 None:intergenic 45.0%
ACTGTCGAGCAATGTGAGAA+TGG - chr1_1:63391086-63391105 Msa0035260:intron 45.0%
CAGTCCATGGTCATTATACC+TGG + chr1_1:63391193-63391212 None:intergenic 45.0%
! GGTATAATGACCATGGACTG+TGG - chr1_1:63391193-63391212 Msa0035260:CDS 45.0%
AATTCAACAGATGCCGGTGA+TGG - chr1_1:63391319-63391338 Msa0035260:CDS 45.0%
AACAATGCGGATACGAGAGA+TGG - chr1_1:63391355-63391374 Msa0035260:CDS 45.0%
GACACCATGCTGGTATGTCA+TGG - chr1_1:63387372-63387391 Msa0035260:CDS 50.0%
TTGCCTCATTGGGAACCAAG+TGG - chr1_1:63387960-63387979 Msa0035260:CDS 50.0%
TTGGGAACCAAGTGGACCAA+TGG - chr1_1:63387968-63387987 Msa0035260:CDS 50.0%
!! TGAGGGTACTGTCTCATGCA+AGG - chr1_1:63388234-63388253 Msa0035260:CDS 50.0%
GACGTGATGTGAAGTCCATG+TGG + chr1_1:63388535-63388554 None:intergenic 50.0%
CACATCACTGCCGCATCTAT+AGG + chr1_1:63388687-63388706 None:intergenic 50.0%
CTATAGATGCGGCAGTGATG+TGG - chr1_1:63388685-63388704 Msa0035260:intron 50.0%
! TTTAGCACTGGGGGAATGGA+TGG - chr1_1:63388903-63388922 Msa0035260:CDS 50.0%
!!! TTTTCTCTCGGCTTGGTGAG+TGG + chr1_1:63389145-63389164 None:intergenic 50.0%
GGAAGCCAATTCTGAACCAG+AGG + chr1_1:63389268-63389287 None:intergenic 50.0%
CTTTCTCCATCGCCACAAGA+TGG + chr1_1:63389545-63389564 None:intergenic 50.0%
CATCTTGTGGCGATGGAGAA+AGG - chr1_1:63389543-63389562 Msa0035260:CDS 50.0%
GACACATTACGGTTCGAGCT+TGG - chr1_1:63389694-63389713 Msa0035260:CDS 50.0%
GAAGGAACAGGCTTAGGACT+TGG - chr1_1:63389978-63389997 Msa0035260:intron 50.0%
! AGCGTCGGAGGACTTGTAAA+AGG - chr1_1:63390388-63390407 Msa0035260:CDS 50.0%
AACTTGGGCCATTTGAACGG+CGG + chr1_1:63390500-63390519 None:intergenic 50.0%
GCCTCAAATCCATCCATCAC+CGG + chr1_1:63391335-63391354 None:intergenic 50.0%
GGTCCACTTGGTTCCCAATG+AGG + chr1_1:63387966-63387985 None:intergenic 55.0%
GTCATGGCTGGCACTAGCAA+CGG + chr1_1:63389187-63389206 None:intergenic 55.0%
! AGAAGTGCGAACGTCATGGC+TGG + chr1_1:63389199-63389218 None:intergenic 55.0%
! CGAGAGAAGTGCGAACGTCA+TGG + chr1_1:63389203-63389222 None:intergenic 55.0%
TTACGGTTCGAGCTTGGGCT+CGG - chr1_1:63389700-63389719 Msa0035260:CDS 55.0%
CAACTCTAGTCCTAGGCTCG+AGG - chr1_1:63390332-63390351 Msa0035260:intron 55.0%
!! TTGGAAATGTGGAGCGTCGG+AGG - chr1_1:63390376-63390395 Msa0035260:intron 55.0%
!! CAACAGATGCCGGTGATGGA+TGG - chr1_1:63391323-63391342 Msa0035260:CDS 55.0%
!! GCCGGTGATGGATGGATTTG+AGG - chr1_1:63391331-63391350 Msa0035260:CDS 55.0%
CGAGAGATGGAGAAGCCGTT+TGG - chr1_1:63391368-63391387 Msa0035260:intron 55.0%
GATAGATCGACGACGGTGAC+TGG - chr1_1:63391428-63391447 Msa0035260:intron 55.0%
ATCGACGACGGTGACTGGAA+TGG - chr1_1:63391433-63391452 Msa0035260:intron 55.0%
GACGTTCGCACTTCTCTCGC+AGG - chr1_1:63389204-63389223 Msa0035260:CDS 60.0%
ATTCGCGCGTGAAAGGCGAC+AGG - chr1_1:63389610-63389629 Msa0035260:CDS 60.0%
TTCGCGCGTGAAAGGCGACA+GGG - chr1_1:63389611-63389630 Msa0035260:CDS 60.0%
CAGAAGGGCCGCCGTTCAAA+TGG - chr1_1:63390489-63390508 Msa0035260:CDS 60.0%
TCGCGCGTGAAAGGCGACAG+GGG - chr1_1:63389612-63389631 Msa0035260:CDS 65.0%
ACACGGGATGCCTCGAGCCT+AGG + chr1_1:63390345-63390364 None:intergenic 65.0%
GGCTGGCACTAGCAACGGCG+AGG + chr1_1:63389182-63389201 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 63387201 63391523 63387201 ID=Msa0035260;Name=Msa0035260
chr1_1 mRNA 63387201 63391523 63387201 ID=Msa0035260-mRNA-1;Parent=Msa0035260;Name=Msa0035260-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|7|0|1054
chr1_1 exon 63391488 63391523 63391488 ID=Msa0035260-mRNA-1:exon:20174;Parent=Msa0035260-mRNA-1
chr1_1 exon 63391148 63391384 63391148 ID=Msa0035260-mRNA-1:exon:20173;Parent=Msa0035260-mRNA-1
chr1_1 exon 63390382 63391029 63390382 ID=Msa0035260-mRNA-1:exon:20172;Parent=Msa0035260-mRNA-1
chr1_1 exon 63389397 63389763 63389397 ID=Msa0035260-mRNA-1:exon:20171;Parent=Msa0035260-mRNA-1
chr1_1 exon 63388708 63389291 63388708 ID=Msa0035260-mRNA-1:exon:20170;Parent=Msa0035260-mRNA-1
chr1_1 exon 63387531 63388628 63387531 ID=Msa0035260-mRNA-1:exon:20169;Parent=Msa0035260-mRNA-1
chr1_1 exon 63387201 63387395 63387201 ID=Msa0035260-mRNA-1:exon:20168;Parent=Msa0035260-mRNA-1
chr1_1 CDS 63391488 63391523 63391488 ID=Msa0035260-mRNA-1:cds;Parent=Msa0035260-mRNA-1
chr1_1 CDS 63391148 63391384 63391148 ID=Msa0035260-mRNA-1:cds;Parent=Msa0035260-mRNA-1
chr1_1 CDS 63390382 63391029 63390382 ID=Msa0035260-mRNA-1:cds;Parent=Msa0035260-mRNA-1
chr1_1 CDS 63389397 63389763 63389397 ID=Msa0035260-mRNA-1:cds;Parent=Msa0035260-mRNA-1
chr1_1 CDS 63388708 63389291 63388708 ID=Msa0035260-mRNA-1:cds;Parent=Msa0035260-mRNA-1
chr1_1 CDS 63387531 63388628 63387531 ID=Msa0035260-mRNA-1:cds;Parent=Msa0035260-mRNA-1
chr1_1 CDS 63387201 63387395 63387201 ID=Msa0035260-mRNA-1:cds;Parent=Msa0035260-mRNA-1
Gene Sequence

>Msa0035260

ATGGCATTACAGCCTTTGTCTATCGTGATCTTACTGGCATATGGGGCACTGATAACGCTTATCTCGTTGACACCATGCTGGTATGTCATGGTAACACATATCGAGAAACAAGCAAATTTGAGCTCAGAAAATATTGTAACACAACTGCAATCAGAAATTAAGTACTCAACTGAACTGTTGCATCCAATGAAATCATCATCAACAAATTTAGCAAGATTGTTGAGTTCGAAACTTGATTCTACTAACATCTCTTTCTCTGATATTGAAACCAAGGTTGCTCCACTGTTATTTGAAGCATTTGAGACAGTTCCTCACTTGACTCAAATCTCATACATTGGAATGGAAGGTCTCTTTTTCTCATATTGCAGTGATCTTGATCAAGCTCTAGCAATATACTCTAACTCATCATCAAATAAAATCTTATACTATGTCCATCCTGTGAATAATGAAACTGGAAAAGTTTTTGGAGAAGCCATAGTATCAAACTCTTCTATCAGCACAAGTTGGATTAAGAAAGAAGCTAATACTTCAAATGAATTTGCCTCATTGGGAACCAAGTGGACCAATGGACATGATCTTTTGTTTCTAAATTCTGCTAGAGTCAACAGAATAGGAGTGATCTCTCTTGGATTTTCAGCAAAAGCAATAACTGATTCTGTTACTCGTGTCAACCGTTTAGGAACGAGCACGTATTTGGCTACAAAAGATGGACAAATTCTTGTGGAAGGGATTCAACATATTCGTTTGGTTATTTCTAATGATTCAGTTTCATTCCAATCAGTGAATGCAAATGGAGATGTGATTAAGAATTATGAGGGTACTGTCTCATGCAAGGATGAAGCTACTGCTTCTAGTTTGAATATTCAAAATACTCAATATCTAATCCGCTGCTCCCCGATTGATATATTGGGAATAGAATCAGTGTATGTTTTGGCTGTACCAAGAAATGGATTTGATGTGAGTTACAAGAAAATGGGATTGGCTTTATTGAATGTAATGTTGGTAATGATACTTGTTGCTGTCTTAGGTTTTCTATTTATAGATGGTAGAGCCATAAGGAGAGAAATGCATTTGTGTGCCTCACTTATCAAACAAAAAGAGGCCACTCACCAAGCCGAGAGAAAAAATATGAACAAAAGCCTCGCCGTTGCTAGTGCCAGCCATGACGTTCGCACTTCTCTCGCAGGCATTACTGCTCTCATAAAAATTTCATCTAAGTTAGTTCCCTCTGGTTCAGAATTGGCTTCCAATTTAATCCAAATGGAGGATTGTACACAAGACTTACTAGGACTATTGAACTCTATACTAGACACAAGCAAAATTGAGGTAGGAAAAATGGAACTTGTGGAAGAAGAATTTGATTTATCTCATTTCTTGGAAGAAGTGGTTGATATATACCATCTTGTGGCGATGGAGAAAGGTGTAGATCTTGTATTGGACCCTTGTAATGGTTCTGTTATAAAATATTCGCGCGTGAAAGGCGACAGGGGAAGACTTAAACAAGTTTTGTGTAATTTACTGAACAATGCTGTCAAATTTACAAATGAAGGACACATTACGGTTCGAGCTTGGGCTCGGAAGCCAACATTAAGTAGCTCAATAATCAAGACCAACCAAAATAGTTTCATGAAACAATTGTCATGGTTATTTTCTAAGAAAAAAAATGAACCAGATGAGGACATAGAAAAAACTATGAATTCAATTCAACAAGATCCAACGCGTTCTATGGATTTCACATTTGAAGTTGATGATACAGGAAAAGGAATTCCCAAAGAGAATTCCAAGTCTGTGTTTGAGAATTATGTTCAAGTCAAAGAAACTAATCCTGTTCAAGAAGGAACAGGCTTAGGACTTGGAATTGTGCAGTCTTTGGTACGTTTGATGCATGGAGATATTGAAATTGTGGACAAGAATATTGGTGAAAAAGGAACATGTTTTCGGTTCAATGTGCTCCTCAGTTTATGTGAAGGTGAAACAGTGACAGATTTTAGCACAAGGGAAGGTCTTGAGTATGGAACAAGTAACAGTACTCAAGCTCGAGGGAGAACCACTCATGCTACTAGTTCTAGTTCAAACATTTGTTCCATGAGTCCCATGTATCATATGTGCAACTCTAGTCCTAGGCTCGAGGCATCCCGTGTTGTTCTTTTCATTGGAAATGTGGAGCGTCGGAGGACTTGTAAAAGGTTTATGAAGAGCTTAGGGATTAAAGTTAAGGTTGTGAAGTGTCAAAAAGATCTGTTTGATACTCTAGAGGAGATCAAACAGAAGGGCCGCCGTTCAAATGGCCCAAGTTCTCCAGAATCCTCTTCCAATTTGAGTTCTTCTCATTCCACATCTCATAATTCATTTTCTAGAGCTAAAGGTGTTCCCTTGAGTTTTATGGATGGAACTGAGTATATGTCTCCAGTGTTCAAAAAGATGAATTTTGGAACTGTAGCATGCTTCGTCTTGATTGTCATCGATGCAAATGCAGGATCATCATTTTCTGAACTCTTTGGAATTGTATCCAAATTCAAGAAAGGCCTTTCGAATTCTTGTAACGTTGTTTGGTTGGATAATCCACATATGCATCGTATTGATTCCAGAATAATTGATCAAAATGACATTGTCGTATCGAAACCATTTCACGGTAGTCGTTTGTTCCAAGTCATAATGCTTCTTCCTGAGTATGATAATGGTAGTGTTTGGCAAAGCATTAAGAAACCTCACACTAGAAATTCTCCTGTTCATCAAGGAGAAATTCAAGAATGTGAAGGCTCAAGCTGTTACAAACCTTTGCATTGCAAGAAGTTTTTGATTGTCGAGGATACTAAAATTTTACGTGTGATAGCGACAAATATATTGGTTTCGCTTGGAGCGACTGTCGAGCAATGTGAGAATGGCAAAGAAGCTGTAATGCTAGTTGTTGAAGGTCTAAAAAGGGATGATCCTAATCCTCCTTATGATTACATCTTAATGGATTGCCAGATGCCGGTGATGGATGGATTTGAGGCAACAATGCGGATACGAGAGATGGAGAAGCCGTTTGGTGTTCGCATTCCTATCATTGCATTAAGTGCAGATATTGATAGATCGACGACGGTGACTGGAATGGACTTTTATATAGAAAAACCACTTAGAAAAGAGCATTTACTTGAAGCCGTCAGAATCTTAAACAGTTAA
Protein sequence

>Msa0035260

MALQPLSIVILLAYGALITLISLTPCWYVMVTHIEKQANLSSENIVTQLQSEIKYSTELLHPMKSSSTNLARLLSSKLDSTNISFSDIETKVAPLLFEAFETVPHLTQISYIGMEGLFFSYCSDLDQALAIYSNSSSNKILYYVHPVNNETGKVFGEAIVSNSSISTSWIKKEANTSNEFASLGTKWTNGHDLLFLNSARVNRIGVISLGFSAKAITDSVTRVNRLGTSTYLATKDGQILVEGIQHIRLVISNDSVSFQSVNANGDVIKNYEGTVSCKDEATASSLNIQNTQYLIRCSPIDILGIESVYVLAVPRNGFDVSYKKMGLALLNVMLVMILVAVLGFLFIDGRAIRREMHLCASLIKQKEATHQAERKNMNKSLAVASASHDVRTSLAGITALIKISSKLVPSGSELASNLIQMEDCTQDLLGLLNSILDTSKIEVGKMELVEEEFDLSHFLEEVVDIYHLVAMEKGVDLVLDPCNGSVIKYSRVKGDRGRLKQVLCNLLNNAVKFTNEGHITVRAWARKPTLSSSIIKTNQNSFMKQLSWLFSKKKNEPDEDIEKTMNSIQQDPTRSMDFTFEVDDTGKGIPKENSKSVFENYVQVKETNPVQEGTGLGLGIVQSLVRLMHGDIEIVDKNIGEKGTCFRFNVLLSLCEGETVTDFSTREGLEYGTSNSTQARGRTTHATSSSSNICSMSPMYHMCNSSPRLEASRVVLFIGNVERRRTCKRFMKSLGIKVKVVKCQKDLFDTLEEIKQKGRRSNGPSSPESSSNLSSSHSTSHNSFSRAKGVPLSFMDGTEYMSPVFKKMNFGTVACFVLIVIDANAGSSFSELFGIVSKFKKGLSNSCNVVWLDNPHMHRIDSRIIDQNDIVVSKPFHGSRLFQVIMLLPEYDNGSVWQSIKKPHTRNSPVHQGEIQECEGSSCYKPLHCKKFLIVEDTKILRVIATNILVSLGATVEQCENGKEAVMLVVEGLKRDDPNPPYDYILMDCQMPVMDGFEATMRIREMEKPFGVRIPIIALSADIDRSTTVTGMDFYIEKPLRKEHLLEAVRILNS*