AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0036710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036710 MtrunA17_Chr1g0198651 97.251 291 8 0 1 291 1 291 0.0 598
Msa0036710 MtrunA17_Chr5g0422571 62.633 281 90 5 1 275 1 272 1.54e-113 329
Msa0036710 MtrunA17_Chr1g0173841 65.094 212 60 2 75 286 188 385 1.91e-99 297
Msa0036710 MtrunA17_Chr7g0258011 71.809 188 39 2 99 286 173 346 2.03e-99 295
Msa0036710 MtrunA17_Chr2g0328921 71.429 189 40 3 99 286 135 310 1.76e-96 286
Msa0036710 MtrunA17_Chr8g0352011 69.730 185 42 2 99 283 163 333 2.74e-96 287
Msa0036710 MtrunA17_Chr2g0321291 69.841 189 41 4 99 284 130 305 7.18e-96 285
Msa0036710 MtrunA17_Chr4g0026521 68.254 189 45 4 99 284 115 291 1.96e-95 283
Msa0036710 MtrunA17_Chr4g0053341 68.391 174 50 2 87 260 61 229 1.18e-86 259
Msa0036710 MtrunA17_Chr1g0200421 41.447 152 83 6 107 255 244 392 5.71e-27 109
Msa0036710 MtrunA17_Chr2g0320341 38.415 164 92 8 105 263 235 394 1.97e-23 99.0
Msa0036710 MtrunA17_Chr1g0181381 31.081 222 135 7 60 276 8 216 2.23e-21 94.0
Msa0036710 MtrunA17_Chr3g0123941 35.000 180 97 8 117 283 139 311 3.56e-21 91.7
Msa0036710 MtrunA17_Chr7g0263941 35.862 145 78 5 107 249 55 186 4.36e-21 92.4
Msa0036710 MtrunA17_Chr8g0382121 35.542 166 99 6 117 279 127 287 7.86e-21 90.5
Msa0036710 MtrunA17_Chr1g0163001 31.188 202 124 5 50 249 7 195 1.02e-20 92.0
Msa0036710 MtrunA17_Chr1g0210821 35.862 145 78 5 107 249 65 196 1.50e-20 91.7
Msa0036710 MtrunA17_Chr4g0029521 34.507 142 81 4 109 249 61 191 1.71e-20 91.3
Msa0036710 MtrunA17_Chr1g0185121 34.667 150 84 5 107 254 61 198 3.04e-20 90.1
Msa0036710 MtrunA17_Chr1g0199101 35.172 145 79 5 107 249 68 199 3.49e-20 90.5
Msa0036710 MtrunA17_Chr8g0342421 33.333 156 89 6 109 262 85 227 4.69e-20 90.1
Msa0036710 MtrunA17_Chr1g0162971 37.063 143 75 5 109 249 64 193 5.18e-20 89.7
Msa0036710 MtrunA17_Chr1g0151351 34.161 161 91 6 91 249 47 194 5.72e-20 89.4
Msa0036710 MtrunA17_Chr7g0268961 35.664 143 77 6 109 249 45 174 8.73e-20 89.0
Msa0036710 MtrunA17_Chr2g0326381 35.211 142 80 4 109 249 55 185 1.03e-19 88.6
Msa0036710 MtrunA17_Chr1g0191991 33.520 179 90 8 103 273 74 231 1.21e-19 89.0
Msa0036710 MtrunA17_Chr2g0330171 35.172 145 79 6 107 249 67 198 3.75e-19 87.0
Msa0036710 MtrunA17_Chr8g0373541 31.188 202 117 7 85 279 29 215 5.52e-19 86.7
Msa0036710 MtrunA17_Chr4g0040571 33.553 152 88 5 107 257 60 199 3.26e-18 84.3
Msa0036710 MtrunA17_Chr3g0141431 30.405 148 89 5 107 252 43 178 7.19e-17 80.1
Msa0036710 MtrunA17_Chr2g0324991 35.461 141 76 7 107 244 13 141 2.12e-16 74.7
Msa0036710 MtrunA17_Chr8g0375521 27.083 192 124 6 61 248 2 181 3.72e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036710 AT1G13290.1 65.447 246 61 5 23 258 12 243 5.62e-108 316
Msa0036710 AT3G57670.1 71.429 196 40 4 99 292 201 382 5.35e-98 293
Msa0036710 AT1G51220.1 75.152 165 38 1 100 264 163 324 5.89e-95 284
Msa0036710 AT3G20880.1 77.987 159 32 1 97 255 238 393 5.78e-94 284
Msa0036710 AT1G08290.1 73.810 168 38 3 99 265 164 326 4.23e-93 279
Msa0036710 AT1G34790.1 75.159 157 36 1 100 256 130 283 7.47e-88 265
Msa0036710 AT1G34370.3 41.176 153 84 5 107 255 27 177 3.13e-26 105
Msa0036710 AT1G34370.2 41.176 153 84 5 107 255 237 387 1.28e-25 106
Msa0036710 AT1G34370.1 41.176 153 84 5 107 255 237 387 1.28e-25 106
Msa0036710 AT5G22890.1 40.645 155 84 7 106 255 209 360 1.50e-24 102
Msa0036710 AT5G03150.1 35.211 142 80 4 109 249 76 206 5.34e-21 93.2
Msa0036710 AT1G55110.3 33.758 157 90 5 107 261 84 228 6.94e-21 92.4
Msa0036710 AT1G55110.1 33.758 157 90 5 107 261 84 228 6.94e-21 92.4
Msa0036710 AT1G55110.2 33.758 157 90 5 107 261 84 228 6.94e-21 92.4
Msa0036710 AT5G44160.1 32.178 202 106 8 63 257 20 197 2.26e-20 91.3
Msa0036710 AT2G02070.2 35.443 158 87 5 94 249 60 204 3.64e-20 90.9
Msa0036710 AT2G02070.1 35.443 158 87 5 94 249 60 204 3.64e-20 90.9
Msa0036710 AT2G02080.1 36.552 145 77 5 107 249 75 206 3.95e-20 90.5
Msa0036710 AT2G02080.4 36.552 145 77 5 107 249 75 206 3.95e-20 90.5
Msa0036710 AT2G02080.5 36.552 145 77 5 107 249 75 206 3.95e-20 90.5
Msa0036710 AT2G02080.3 36.552 145 77 5 107 249 75 206 3.95e-20 90.5
Msa0036710 AT3G45260.2 34.615 156 90 4 109 263 62 206 4.20e-20 90.1
Msa0036710 AT3G45260.1 34.615 156 90 4 109 263 62 206 4.20e-20 90.1
Msa0036710 AT5G60470.1 35.211 142 80 4 109 249 58 188 5.76e-20 89.7
Msa0036710 AT5G60470.3 35.211 142 80 4 109 249 63 193 7.00e-20 89.7
Msa0036710 AT5G60470.2 35.211 142 80 4 109 249 67 197 7.05e-20 89.7
Msa0036710 AT5G66730.1 34.000 150 84 5 107 254 53 189 1.07e-19 89.4
Msa0036710 AT1G14580.1 37.241 145 76 6 107 249 74 205 1.38e-19 89.0
Msa0036710 AT1G14580.2 37.241 145 76 6 107 249 74 205 1.38e-19 89.0
Msa0036710 AT1G14580.3 37.241 145 76 6 107 249 88 219 1.57e-19 88.6
Msa0036710 AT1G03840.2 31.638 177 107 6 83 257 35 199 2.82e-19 88.2
Msa0036710 AT2G02080.6 36.620 142 75 5 110 249 1 129 3.44e-19 87.4
Msa0036710 AT2G02080.2 36.620 142 75 5 110 249 1 129 3.44e-19 87.4
Msa0036710 AT3G50700.1 35.172 145 79 5 107 249 55 186 5.48e-19 87.0
Msa0036710 AT5G44160.2 34.667 150 85 5 109 257 21 158 1.07e-18 85.9
Msa0036710 AT1G03840.1 31.844 179 106 6 83 257 35 201 1.67e-18 85.9
Msa0036710 AT3G13810.4 32.051 156 94 4 107 261 91 235 2.39e-18 85.5
Msa0036710 AT3G13810.1 32.051 156 94 4 107 261 91 235 2.39e-18 85.5
Msa0036710 AT3G13810.5 32.051 156 94 4 107 261 86 230 2.44e-18 85.5
Msa0036710 AT3G13810.2 32.895 152 90 4 107 257 92 232 2.54e-18 85.1
Msa0036710 AT3G13810.6 32.051 156 94 4 107 261 72 216 2.65e-18 85.1
Msa0036710 AT3G13810.3 32.895 152 90 4 107 257 78 218 2.66e-18 85.1
Msa0036710 AT4G02670.1 34.028 144 83 4 107 249 74 206 4.20e-18 84.3
Msa0036710 AT4G02670.2 34.028 144 83 4 107 249 76 208 4.20e-18 84.3

Find 81 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCGAGTTTGGGAGGTATT+TGG 0.247423 1_1:-65380123 None:intergenic
CTCCCATTATTCCTCAATAT+TGG 0.256317 1_1:+65380296 Msa0036710:CDS
AGTGAAAGTTGGATTAATTA+AGG 0.285981 1_1:-65380257 None:intergenic
GATCCAATATTGAGGAATAA+TGG 0.295991 1_1:-65380299 None:intergenic
AAAGGACCGGAGTCTCTAAA+AGG 0.306782 1_1:+65380694 Msa0036710:CDS
GATGAAGATGATGCTGGTTT+TGG 0.319383 1_1:-65380718 None:intergenic
TGCAGACAGTGCAAGAAAAC+TGG 0.325433 1_1:-65380354 None:intergenic
TCTCCTGCTCAAATCCTTGT+TGG 0.331954 1_1:+65380325 Msa0036710:CDS
TTCCTCTCTCTTGCTCCTCC+TGG 0.347551 1_1:+65380097 Msa0036710:CDS
AAAGATCACGTTCGTGCGTT+TGG 0.349116 1_1:+65380994 Msa0036710:CDS
AGAAGAATTGTGGGAAGCTT+TGG 0.351421 1_1:+65380929 Msa0036710:CDS
AATGGGAGTGTGAGATGGTT+TGG 0.355414 1_1:-65380281 None:intergenic
AGGGATAGTAGTAGTAATAG+TGG 0.376112 1_1:-65380155 None:intergenic
AGAGAGGTAGTAGTAGAAAT+AGG 0.389319 1_1:-65380193 None:intergenic
ATCCAATATTGAGGAATAAT+GGG 0.396877 1_1:-65380298 None:intergenic
CACGTTCGTGCGTTTGGTAA+TGG 0.397696 1_1:+65381000 Msa0036710:CDS
CTACATTTACAGCACAAGTA+TGG 0.418258 1_1:-65380225 None:intergenic
GATGGTTTGGAAGTGAAAGT+TGG 0.427167 1_1:-65380268 None:intergenic
TCTTTCAGTGGTCTTGCCCT+TGG 0.430630 1_1:-65380799 None:intergenic
TAGTAGTAATAGTGGGATGA+GGG 0.441652 1_1:-65380147 None:intergenic
CATTTGCTGTGAGAGGAGAT+TGG 0.445706 1_1:+65380896 Msa0036710:CDS
TTGGGAGGTATTTGGTGGCC+AGG 0.460715 1_1:-65380115 None:intergenic
GGGGACATGGATCTCAATAT+AGG 0.462797 1_1:+65380671 Msa0036710:CDS
GTAGTAGTAATAGTGGGATG+AGG 0.468089 1_1:-65380148 None:intergenic
GAAATAGGTATTTGATGCAA+GGG 0.489738 1_1:-65380178 None:intergenic
CATGTTGTTGAAACGGTTGA+AGG 0.493614 1_1:-65380383 None:intergenic
TACATGGAAGAAGAAGAAAC+TGG 0.497808 1_1:+65381081 Msa0036710:CDS
AGGAGCAAGAGAGAGGAAGA+TGG 0.499455 1_1:-65380092 None:intergenic
GGGATAGTAGTAGTAATAGT+GGG 0.503268 1_1:-65380154 None:intergenic
CATTCGAGTGTAGGAAGTGT+AGG 0.505760 1_1:+65380869 Msa0036710:CDS
CGAGTTTGGGAGGTATTTGG+TGG 0.508108 1_1:-65380120 None:intergenic
CCATGTTACTGTTGTGCTGA+GGG 0.513723 1_1:+65380754 Msa0036710:CDS
AGAAATAGGTATTTGATGCA+AGG 0.514616 1_1:-65380179 None:intergenic
GGACACATGAGAAGAATTGT+GGG 0.524360 1_1:+65380920 Msa0036710:CDS
ACAAGGATTTGAGCAGGAGA+AGG 0.531708 1_1:-65380322 None:intergenic
CAACCGTTTCAACAACATGC+AGG 0.536317 1_1:+65380387 Msa0036710:CDS
ATTCCAACGTGTGGGGAGCA+TGG 0.539289 1_1:-65381023 None:intergenic
GAAACAACATAAACTATCCA+AGG 0.546681 1_1:+65380782 Msa0036710:CDS
GAACCTGCATGTTGTTGAAA+CGG 0.548476 1_1:-65380390 None:intergenic
AACTCAAAGATTCCAACGTG+TGG 0.551951 1_1:-65381032 None:intergenic
AGGACACATGAGAAGAATTG+TGG 0.552345 1_1:+65380919 Msa0036710:CDS
AGCATTGATGAAGATGATGC+TGG 0.557005 1_1:-65380724 None:intergenic
AAGGACCGGAGTCTCTAAAA+GGG 0.557565 1_1:+65380695 Msa0036710:CDS
ATCTAAGCTGCTGCTGCAAG+AGG 0.562751 1_1:-65380059 None:intergenic
TTGTATGGTAGATGCATATG+TGG 0.564484 1_1:+65380650 Msa0036710:intron
GGAGGTATTTGGTGGCCAGG+AGG 0.567766 1_1:-65380112 None:intergenic
GAGGGAAGTCATTCGAGTGT+AGG 0.568390 1_1:+65380860 Msa0036710:CDS
ATAGGTATTTGATGCAAGGG+AGG 0.571468 1_1:-65380175 None:intergenic
GGACCAACAAGGATTTGAGC+AGG 0.574385 1_1:-65380328 None:intergenic
ACTCAAAGATTCCAACGTGT+GGG 0.574474 1_1:-65381031 None:intergenic
ACACACTACAAAAGAAAGCA+TGG 0.577637 1_1:+65380838 Msa0036710:CDS
CAAGGATTTGAGCAGGAGAA+GGG 0.578543 1_1:-65380321 None:intergenic
TAAAGTAAATGAAAATTACA+TGG 0.583660 1_1:+65381065 Msa0036710:CDS
AGTAGTAATAGTGGGATGAG+GGG 0.585249 1_1:-65380146 None:intergenic
GCAGACAGTGCAAGAAAACT+GGG 0.587578 1_1:-65380353 None:intergenic
TTGCTGTGAGAGGAGATTGG+AGG 0.592461 1_1:+65380899 Msa0036710:CDS
GGCCAGGAGGAGCAAGAGAG+AGG 0.593784 1_1:-65380099 None:intergenic
GGAATAATGGGAGTGTGAGA+TGG 0.594723 1_1:-65380286 None:intergenic
ATCTCAATATAGGAAAGGAC+CGG 0.597133 1_1:+65380681 Msa0036710:CDS
AGGGTTCTGAAATCTTTCAG+TGG 0.606548 1_1:-65380811 None:intergenic
GGAGAAGGGATCCAATATTG+AGG 0.614687 1_1:-65380307 None:intergenic
ACCATGTTACTGTTGTGCTG+AGG 0.615026 1_1:+65380753 Msa0036710:CDS
CATGGATCTCAATATAGGAA+AGG 0.616598 1_1:+65380676 Msa0036710:CDS
TGTATGGTAGATGCATATGT+GGG 0.620648 1_1:+65380651 Msa0036710:intron
AGGAAGTCATTTGCTGTGAG+AGG 0.625916 1_1:+65380889 Msa0036710:CDS
CCCTCAGCACAACAGTAACA+TGG 0.627644 1_1:-65380754 None:intergenic
CTCAAAGATTCCAACGTGTG+GGG 0.627798 1_1:-65381030 None:intergenic
GTAGTAATAGTGGGATGAGG+GGG 0.632310 1_1:-65380145 None:intergenic
TAGATGCATATGTGGGGACA+TGG 0.632523 1_1:+65380658 Msa0036710:intron
TCTAAGCTGCTGCTGCAAGA+GGG 0.633302 1_1:-65380058 None:intergenic
AGTATGGTCATGGTGAAGAG+AGG 0.640967 1_1:-65380209 None:intergenic
TAGGTATTTGATGCAAGGGA+GGG 0.641902 1_1:-65380174 None:intergenic
ACTACAAAAGAAAGCATGGA+GGG 0.646182 1_1:+65380842 Msa0036710:CDS
TGGCCATGCTCCCCACACGT+TGG 0.648703 1_1:+65381020 Msa0036710:CDS
AAACAACATAAACTATCCAA+GGG 0.649476 1_1:+65380783 Msa0036710:CDS
TTACAGCACAAGTATGGTCA+TGG 0.652632 1_1:-65380219 None:intergenic
ACAGTGCAAGAAAACTGGGT+AGG 0.667615 1_1:-65380349 None:intergenic
AAAACTGGGTAGGACCAACA+AGG 0.677453 1_1:-65380339 None:intergenic
GTACTGATGATGAGTTTGCA+TGG 0.690956 1_1:-65380014 None:intergenic
CACTACAAAAGAAAGCATGG+AGG 0.735997 1_1:+65380841 Msa0036710:CDS
GTATGGTAGATGCATATGTG+GGG 0.763722 1_1:+65380652 Msa0036710:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGGATAAAAATATAATAA+TGG - chr1_1:65380418-65380437 None:intergenic 10.0%
!! AAAGGATAAAAATATAATAA+TGG - chr1_1:65380418-65380437 None:intergenic 10.0%
!! TCATGATATAGTAAAAATAA+AGG - chr1_1:65380436-65380455 None:intergenic 15.0%
!! CTAATGAATGATTAATTTAA+AGG - chr1_1:65380507-65380526 None:intergenic 15.0%
!! AAACATGATTCATATATATA+TGG + chr1_1:65380605-65380624 Msa0036710:intron 15.0%
!! TAAAGTAAATGAAAATTACA+TGG + chr1_1:65381065-65381084 Msa0036710:CDS 15.0%
!! TCATGATATAGTAAAAATAA+AGG - chr1_1:65380436-65380455 None:intergenic 15.0%
!! CTAATGAATGATTAATTTAA+AGG - chr1_1:65380507-65380526 None:intergenic 15.0%
!! AAACATGATTCATATATATA+TGG + chr1_1:65380605-65380624 Msa0036710:intron 15.0%
!! TAAAGTAAATGAAAATTACA+TGG + chr1_1:65381065-65381084 Msa0036710:CDS 15.0%
!! TATGATATTGTTGTATTGTA+TGG + chr1_1:65380635-65380654 Msa0036710:intron 20.0%
!! TATGATATTGTTGTATTGTA+TGG + chr1_1:65380635-65380654 Msa0036710:intron 20.0%
! AGTGAAAGTTGGATTAATTA+AGG - chr1_1:65380260-65380279 None:intergenic 25.0%
! ATCCAATATTGAGGAATAAT+GGG - chr1_1:65380301-65380320 None:intergenic 25.0%
! GAATGATTAATTTAAAGGCA+AGG - chr1_1:65380502-65380521 None:intergenic 25.0%
! AAACAACATAAACTATCCAA+GGG + chr1_1:65380783-65380802 Msa0036710:CDS 25.0%
! AGTGAAAGTTGGATTAATTA+AGG - chr1_1:65380260-65380279 None:intergenic 25.0%
! ATCCAATATTGAGGAATAAT+GGG - chr1_1:65380301-65380320 None:intergenic 25.0%
! GAATGATTAATTTAAAGGCA+AGG - chr1_1:65380502-65380521 None:intergenic 25.0%
! AAACAACATAAACTATCCAA+GGG + chr1_1:65380783-65380802 Msa0036710:CDS 25.0%
GAAATAGGTATTTGATGCAA+GGG - chr1_1:65380181-65380200 None:intergenic 30.0%
AGAAATAGGTATTTGATGCA+AGG - chr1_1:65380182-65380201 None:intergenic 30.0%
GATCCAATATTGAGGAATAA+TGG - chr1_1:65380302-65380321 None:intergenic 30.0%
TCATTCATGGAAGAAAAGTA+AGG - chr1_1:65380556-65380575 None:intergenic 30.0%
AGCTCAATATGATTCATTCA+TGG - chr1_1:65380569-65380588 None:intergenic 30.0%
GAAACAACATAAACTATCCA+AGG + chr1_1:65380782-65380801 Msa0036710:CDS 30.0%
! TCTTTTGTAGTGTGTTTGAA+GGG - chr1_1:65380833-65380852 None:intergenic 30.0%
! TTCTTTTGTAGTGTGTTTGA+AGG - chr1_1:65380834-65380853 None:intergenic 30.0%
!! TTGGAATCTTTGAGTTTTGA+TGG + chr1_1:65381039-65381058 Msa0036710:CDS 30.0%
GAAATAGGTATTTGATGCAA+GGG - chr1_1:65380181-65380200 None:intergenic 30.0%
AGAAATAGGTATTTGATGCA+AGG - chr1_1:65380182-65380201 None:intergenic 30.0%
GATCCAATATTGAGGAATAA+TGG - chr1_1:65380302-65380321 None:intergenic 30.0%
TCATTCATGGAAGAAAAGTA+AGG - chr1_1:65380556-65380575 None:intergenic 30.0%
AGCTCAATATGATTCATTCA+TGG - chr1_1:65380569-65380588 None:intergenic 30.0%
GAAACAACATAAACTATCCA+AGG + chr1_1:65380782-65380801 Msa0036710:CDS 30.0%
! TCTTTTGTAGTGTGTTTGAA+GGG - chr1_1:65380833-65380852 None:intergenic 30.0%
! TTCTTTTGTAGTGTGTTTGA+AGG - chr1_1:65380834-65380853 None:intergenic 30.0%
!! TTGGAATCTTTGAGTTTTGA+TGG + chr1_1:65381039-65381058 Msa0036710:CDS 30.0%
! TAGTAGTAATAGTGGGATGA+GGG - chr1_1:65380150-65380169 None:intergenic 35.0%
GGGATAGTAGTAGTAATAGT+GGG - chr1_1:65380157-65380176 None:intergenic 35.0%
AGGGATAGTAGTAGTAATAG+TGG - chr1_1:65380158-65380177 None:intergenic 35.0%
AGAGAGGTAGTAGTAGAAAT+AGG - chr1_1:65380196-65380215 None:intergenic 35.0%
CTACATTTACAGCACAAGTA+TGG - chr1_1:65380228-65380247 None:intergenic 35.0%
CTCCCATTATTCCTCAATAT+TGG + chr1_1:65380296-65380315 Msa0036710:CDS 35.0%
TTGTATGGTAGATGCATATG+TGG + chr1_1:65380650-65380669 Msa0036710:intron 35.0%
TGTATGGTAGATGCATATGT+GGG + chr1_1:65380651-65380670 Msa0036710:intron 35.0%
CATGGATCTCAATATAGGAA+AGG + chr1_1:65380676-65380695 Msa0036710:CDS 35.0%
ATCTCAATATAGGAAAGGAC+CGG + chr1_1:65380681-65380700 Msa0036710:CDS 35.0%
ACACACTACAAAAGAAAGCA+TGG + chr1_1:65380838-65380857 Msa0036710:CDS 35.0%
! ACTACAAAAGAAAGCATGGA+GGG + chr1_1:65380842-65380861 Msa0036710:CDS 35.0%
!!! AAGCTTTGGTTTTGTATCTG+TGG + chr1_1:65380943-65380962 Msa0036710:CDS 35.0%
TACATGGAAGAAGAAGAAAC+TGG + chr1_1:65381081-65381100 Msa0036710:CDS 35.0%
! TAGTAGTAATAGTGGGATGA+GGG - chr1_1:65380150-65380169 None:intergenic 35.0%
GGGATAGTAGTAGTAATAGT+GGG - chr1_1:65380157-65380176 None:intergenic 35.0%
AGGGATAGTAGTAGTAATAG+TGG - chr1_1:65380158-65380177 None:intergenic 35.0%
AGAGAGGTAGTAGTAGAAAT+AGG - chr1_1:65380196-65380215 None:intergenic 35.0%
CTACATTTACAGCACAAGTA+TGG - chr1_1:65380228-65380247 None:intergenic 35.0%
CTCCCATTATTCCTCAATAT+TGG + chr1_1:65380296-65380315 Msa0036710:CDS 35.0%
TTGTATGGTAGATGCATATG+TGG + chr1_1:65380650-65380669 Msa0036710:intron 35.0%
TGTATGGTAGATGCATATGT+GGG + chr1_1:65380651-65380670 Msa0036710:intron 35.0%
CATGGATCTCAATATAGGAA+AGG + chr1_1:65380676-65380695 Msa0036710:CDS 35.0%
ATCTCAATATAGGAAAGGAC+CGG + chr1_1:65380681-65380700 Msa0036710:CDS 35.0%
ACACACTACAAAAGAAAGCA+TGG + chr1_1:65380838-65380857 Msa0036710:CDS 35.0%
! ACTACAAAAGAAAGCATGGA+GGG + chr1_1:65380842-65380861 Msa0036710:CDS 35.0%
!!! AAGCTTTGGTTTTGTATCTG+TGG + chr1_1:65380943-65380962 Msa0036710:CDS 35.0%
TACATGGAAGAAGAAGAAAC+TGG + chr1_1:65381081-65381100 Msa0036710:CDS 35.0%
! AGTAGTAATAGTGGGATGAG+GGG - chr1_1:65380149-65380168 None:intergenic 40.0%
! GTAGTAGTAATAGTGGGATG+AGG - chr1_1:65380151-65380170 None:intergenic 40.0%
TAGGTATTTGATGCAAGGGA+GGG - chr1_1:65380177-65380196 None:intergenic 40.0%
ATAGGTATTTGATGCAAGGG+AGG - chr1_1:65380178-65380197 None:intergenic 40.0%
TTACAGCACAAGTATGGTCA+TGG - chr1_1:65380222-65380241 None:intergenic 40.0%
! GATGGTTTGGAAGTGAAAGT+TGG - chr1_1:65380271-65380290 None:intergenic 40.0%
CATGTTGTTGAAACGGTTGA+AGG - chr1_1:65380386-65380405 None:intergenic 40.0%
GAACCTGCATGTTGTTGAAA+CGG - chr1_1:65380393-65380412 None:intergenic 40.0%
GTATGGTAGATGCATATGTG+GGG + chr1_1:65380652-65380671 Msa0036710:intron 40.0%
!!! GATGAAGATGATGCTGGTTT+TGG - chr1_1:65380721-65380740 None:intergenic 40.0%
!! AGCATTGATGAAGATGATGC+TGG - chr1_1:65380727-65380746 None:intergenic 40.0%
!! AGGGTTCTGAAATCTTTCAG+TGG - chr1_1:65380814-65380833 None:intergenic 40.0%
! CACTACAAAAGAAAGCATGG+AGG + chr1_1:65380841-65380860 Msa0036710:CDS 40.0%
AGGACACATGAGAAGAATTG+TGG + chr1_1:65380919-65380938 Msa0036710:CDS 40.0%
GGACACATGAGAAGAATTGT+GGG + chr1_1:65380920-65380939 Msa0036710:CDS 40.0%
AGAAGAATTGTGGGAAGCTT+TGG + chr1_1:65380929-65380948 Msa0036710:CDS 40.0%
ACTCAAAGATTCCAACGTGT+GGG - chr1_1:65381034-65381053 None:intergenic 40.0%
AACTCAAAGATTCCAACGTG+TGG - chr1_1:65381035-65381054 None:intergenic 40.0%
! AGTAGTAATAGTGGGATGAG+GGG - chr1_1:65380149-65380168 None:intergenic 40.0%
! GTAGTAGTAATAGTGGGATG+AGG - chr1_1:65380151-65380170 None:intergenic 40.0%
TAGGTATTTGATGCAAGGGA+GGG - chr1_1:65380177-65380196 None:intergenic 40.0%
ATAGGTATTTGATGCAAGGG+AGG - chr1_1:65380178-65380197 None:intergenic 40.0%
TTACAGCACAAGTATGGTCA+TGG - chr1_1:65380222-65380241 None:intergenic 40.0%
! GATGGTTTGGAAGTGAAAGT+TGG - chr1_1:65380271-65380290 None:intergenic 40.0%
CATGTTGTTGAAACGGTTGA+AGG - chr1_1:65380386-65380405 None:intergenic 40.0%
GAACCTGCATGTTGTTGAAA+CGG - chr1_1:65380393-65380412 None:intergenic 40.0%
GTATGGTAGATGCATATGTG+GGG + chr1_1:65380652-65380671 Msa0036710:intron 40.0%
!!! GATGAAGATGATGCTGGTTT+TGG - chr1_1:65380721-65380740 None:intergenic 40.0%
!! AGCATTGATGAAGATGATGC+TGG - chr1_1:65380727-65380746 None:intergenic 40.0%
!! AGGGTTCTGAAATCTTTCAG+TGG - chr1_1:65380814-65380833 None:intergenic 40.0%
! CACTACAAAAGAAAGCATGG+AGG + chr1_1:65380841-65380860 Msa0036710:CDS 40.0%
AGGACACATGAGAAGAATTG+TGG + chr1_1:65380919-65380938 Msa0036710:CDS 40.0%
GGACACATGAGAAGAATTGT+GGG + chr1_1:65380920-65380939 Msa0036710:CDS 40.0%
AGAAGAATTGTGGGAAGCTT+TGG + chr1_1:65380929-65380948 Msa0036710:CDS 40.0%
ACTCAAAGATTCCAACGTGT+GGG - chr1_1:65381034-65381053 None:intergenic 40.0%
AACTCAAAGATTCCAACGTG+TGG - chr1_1:65381035-65381054 None:intergenic 40.0%
! GTAGTAATAGTGGGATGAGG+GGG - chr1_1:65380148-65380167 None:intergenic 45.0%
AGTATGGTCATGGTGAAGAG+AGG - chr1_1:65380212-65380231 None:intergenic 45.0%
! AATGGGAGTGTGAGATGGTT+TGG - chr1_1:65380284-65380303 None:intergenic 45.0%
! GGAATAATGGGAGTGTGAGA+TGG - chr1_1:65380289-65380308 None:intergenic 45.0%
GGAGAAGGGATCCAATATTG+AGG - chr1_1:65380310-65380329 None:intergenic 45.0%
CAAGGATTTGAGCAGGAGAA+GGG - chr1_1:65380324-65380343 None:intergenic 45.0%
ACAAGGATTTGAGCAGGAGA+AGG - chr1_1:65380325-65380344 None:intergenic 45.0%
TCTCCTGCTCAAATCCTTGT+TGG + chr1_1:65380325-65380344 Msa0036710:CDS 45.0%
AAAACTGGGTAGGACCAACA+AGG - chr1_1:65380342-65380361 None:intergenic 45.0%
ACAGTGCAAGAAAACTGGGT+AGG - chr1_1:65380352-65380371 None:intergenic 45.0%
GCAGACAGTGCAAGAAAACT+GGG - chr1_1:65380356-65380375 None:intergenic 45.0%
TGCAGACAGTGCAAGAAAAC+TGG - chr1_1:65380357-65380376 None:intergenic 45.0%
CAACCGTTTCAACAACATGC+AGG + chr1_1:65380387-65380406 Msa0036710:CDS 45.0%
TAGATGCATATGTGGGGACA+TGG + chr1_1:65380658-65380677 Msa0036710:intron 45.0%
GGGGACATGGATCTCAATAT+AGG + chr1_1:65380671-65380690 Msa0036710:CDS 45.0%
AAAGGACCGGAGTCTCTAAA+AGG + chr1_1:65380694-65380713 Msa0036710:CDS 45.0%
! AAGGACCGGAGTCTCTAAAA+GGG + chr1_1:65380695-65380714 Msa0036710:CDS 45.0%
!! TTTGGCCCTTTTAGAGACTC+CGG - chr1_1:65380703-65380722 None:intergenic 45.0%
ACCATGTTACTGTTGTGCTG+AGG + chr1_1:65380753-65380772 Msa0036710:CDS 45.0%
CCATGTTACTGTTGTGCTGA+GGG + chr1_1:65380754-65380773 Msa0036710:CDS 45.0%
! CATTCGAGTGTAGGAAGTGT+AGG + chr1_1:65380869-65380888 Msa0036710:CDS 45.0%
!! AGGAAGTCATTTGCTGTGAG+AGG + chr1_1:65380889-65380908 Msa0036710:CDS 45.0%
!! CATTTGCTGTGAGAGGAGAT+TGG + chr1_1:65380896-65380915 Msa0036710:CDS 45.0%
AAAGATCACGTTCGTGCGTT+TGG + chr1_1:65380994-65381013 Msa0036710:CDS 45.0%
CTCAAAGATTCCAACGTGTG+GGG - chr1_1:65381033-65381052 None:intergenic 45.0%
! GTAGTAATAGTGGGATGAGG+GGG - chr1_1:65380148-65380167 None:intergenic 45.0%
AGTATGGTCATGGTGAAGAG+AGG - chr1_1:65380212-65380231 None:intergenic 45.0%
! AATGGGAGTGTGAGATGGTT+TGG - chr1_1:65380284-65380303 None:intergenic 45.0%
! GGAATAATGGGAGTGTGAGA+TGG - chr1_1:65380289-65380308 None:intergenic 45.0%
GGAGAAGGGATCCAATATTG+AGG - chr1_1:65380310-65380329 None:intergenic 45.0%
CAAGGATTTGAGCAGGAGAA+GGG - chr1_1:65380324-65380343 None:intergenic 45.0%
ACAAGGATTTGAGCAGGAGA+AGG - chr1_1:65380325-65380344 None:intergenic 45.0%
TCTCCTGCTCAAATCCTTGT+TGG + chr1_1:65380325-65380344 Msa0036710:CDS 45.0%
AAAACTGGGTAGGACCAACA+AGG - chr1_1:65380342-65380361 None:intergenic 45.0%
ACAGTGCAAGAAAACTGGGT+AGG - chr1_1:65380352-65380371 None:intergenic 45.0%
GCAGACAGTGCAAGAAAACT+GGG - chr1_1:65380356-65380375 None:intergenic 45.0%
TGCAGACAGTGCAAGAAAAC+TGG - chr1_1:65380357-65380376 None:intergenic 45.0%
CAACCGTTTCAACAACATGC+AGG + chr1_1:65380387-65380406 Msa0036710:CDS 45.0%
TAGATGCATATGTGGGGACA+TGG + chr1_1:65380658-65380677 Msa0036710:intron 45.0%
GGGGACATGGATCTCAATAT+AGG + chr1_1:65380671-65380690 Msa0036710:CDS 45.0%
AAAGGACCGGAGTCTCTAAA+AGG + chr1_1:65380694-65380713 Msa0036710:CDS 45.0%
! AAGGACCGGAGTCTCTAAAA+GGG + chr1_1:65380695-65380714 Msa0036710:CDS 45.0%
!! TTTGGCCCTTTTAGAGACTC+CGG - chr1_1:65380703-65380722 None:intergenic 45.0%
ACCATGTTACTGTTGTGCTG+AGG + chr1_1:65380753-65380772 Msa0036710:CDS 45.0%
CCATGTTACTGTTGTGCTGA+GGG + chr1_1:65380754-65380773 Msa0036710:CDS 45.0%
! CATTCGAGTGTAGGAAGTGT+AGG + chr1_1:65380869-65380888 Msa0036710:CDS 45.0%
!! AGGAAGTCATTTGCTGTGAG+AGG + chr1_1:65380889-65380908 Msa0036710:CDS 45.0%
!! CATTTGCTGTGAGAGGAGAT+TGG + chr1_1:65380896-65380915 Msa0036710:CDS 45.0%
AAAGATCACGTTCGTGCGTT+TGG + chr1_1:65380994-65381013 Msa0036710:CDS 45.0%
CTCAAAGATTCCAACGTGTG+GGG - chr1_1:65381033-65381052 None:intergenic 45.0%
TCTAAGCTGCTGCTGCAAGA+GGG - chr1_1:65380061-65380080 None:intergenic 50.0%
ATCTAAGCTGCTGCTGCAAG+AGG - chr1_1:65380062-65380081 None:intergenic 50.0%
AGGAGCAAGAGAGAGGAAGA+TGG - chr1_1:65380095-65380114 None:intergenic 50.0%
!! CGAGTTTGGGAGGTATTTGG+TGG - chr1_1:65380123-65380142 None:intergenic 50.0%
!! GTGCGAGTTTGGGAGGTATT+TGG - chr1_1:65380126-65380145 None:intergenic 50.0%
GGACCAACAAGGATTTGAGC+AGG - chr1_1:65380331-65380350 None:intergenic 50.0%
CCCTCAGCACAACAGTAACA+TGG - chr1_1:65380757-65380776 None:intergenic 50.0%
! TCTTTCAGTGGTCTTGCCCT+TGG - chr1_1:65380802-65380821 None:intergenic 50.0%
GAGGGAAGTCATTCGAGTGT+AGG + chr1_1:65380860-65380879 Msa0036710:CDS 50.0%
TTGCTGTGAGAGGAGATTGG+AGG + chr1_1:65380899-65380918 Msa0036710:CDS 50.0%
CACGTTCGTGCGTTTGGTAA+TGG + chr1_1:65381000-65381019 Msa0036710:CDS 50.0%
TCTAAGCTGCTGCTGCAAGA+GGG - chr1_1:65380061-65380080 None:intergenic 50.0%
ATCTAAGCTGCTGCTGCAAG+AGG - chr1_1:65380062-65380081 None:intergenic 50.0%
AGGAGCAAGAGAGAGGAAGA+TGG - chr1_1:65380095-65380114 None:intergenic 50.0%
!! CGAGTTTGGGAGGTATTTGG+TGG - chr1_1:65380123-65380142 None:intergenic 50.0%
!! GTGCGAGTTTGGGAGGTATT+TGG - chr1_1:65380126-65380145 None:intergenic 50.0%
GGACCAACAAGGATTTGAGC+AGG - chr1_1:65380331-65380350 None:intergenic 50.0%
CCCTCAGCACAACAGTAACA+TGG - chr1_1:65380757-65380776 None:intergenic 50.0%
! TCTTTCAGTGGTCTTGCCCT+TGG - chr1_1:65380802-65380821 None:intergenic 50.0%
GAGGGAAGTCATTCGAGTGT+AGG + chr1_1:65380860-65380879 Msa0036710:CDS 50.0%
TTGCTGTGAGAGGAGATTGG+AGG + chr1_1:65380899-65380918 Msa0036710:CDS 50.0%
CACGTTCGTGCGTTTGGTAA+TGG + chr1_1:65381000-65381019 Msa0036710:CDS 50.0%
TTCCTCTCTCTTGCTCCTCC+TGG + chr1_1:65380097-65380116 Msa0036710:CDS 55.0%
!! TTGGGAGGTATTTGGTGGCC+AGG - chr1_1:65380118-65380137 None:intergenic 55.0%
ATTCCAACGTGTGGGGAGCA+TGG - chr1_1:65381026-65381045 None:intergenic 55.0%
TTCCTCTCTCTTGCTCCTCC+TGG + chr1_1:65380097-65380116 Msa0036710:CDS 55.0%
!! TTGGGAGGTATTTGGTGGCC+AGG - chr1_1:65380118-65380137 None:intergenic 55.0%
ATTCCAACGTGTGGGGAGCA+TGG - chr1_1:65381026-65381045 None:intergenic 55.0%
!! GGAGGTATTTGGTGGCCAGG+AGG - chr1_1:65380115-65380134 None:intergenic 60.0%
! GGATGAGGGGGTGCGAGTTT+GGG - chr1_1:65380136-65380155 None:intergenic 60.0%
!! GGAGGTATTTGGTGGCCAGG+AGG - chr1_1:65380115-65380134 None:intergenic 60.0%
! GGATGAGGGGGTGCGAGTTT+GGG - chr1_1:65380136-65380155 None:intergenic 60.0%
GGCCAGGAGGAGCAAGAGAG+AGG - chr1_1:65380102-65380121 None:intergenic 65.0%
! TGAGGGGGTGCGAGTTTGGG+AGG - chr1_1:65380133-65380152 None:intergenic 65.0%
! GGGATGAGGGGGTGCGAGTT+TGG - chr1_1:65380137-65380156 None:intergenic 65.0%
TGGCCATGCTCCCCACACGT+TGG + chr1_1:65381020-65381039 Msa0036710:CDS 65.0%
GGCCAGGAGGAGCAAGAGAG+AGG - chr1_1:65380102-65380121 None:intergenic 65.0%
! TGAGGGGGTGCGAGTTTGGG+AGG - chr1_1:65380133-65380152 None:intergenic 65.0%
! GGGATGAGGGGGTGCGAGTT+TGG - chr1_1:65380137-65380156 None:intergenic 65.0%
TGGCCATGCTCCCCACACGT+TGG + chr1_1:65381020-65381039 Msa0036710:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65380016 65381152 65380016 ID=Msa0036710;Name=Msa0036710
chr1_1 mRNA 65380016 65381152 65380016 ID=Msa0036710-mRNA-1;Parent=Msa0036710;Name=Msa0036710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|294
chr1_1 exon 65380016 65380408 65380016 ID=Msa0036710-mRNA-1:exon:21045;Parent=Msa0036710-mRNA-1
chr1_1 exon 65380661 65381152 65380661 ID=Msa0036710-mRNA-1:exon:21046;Parent=Msa0036710-mRNA-1
chr1_1 CDS 65380016 65380408 65380016 ID=Msa0036710-mRNA-1:cds;Parent=Msa0036710-mRNA-1
chr1_1 CDS 65380661 65381152 65380661 ID=Msa0036710-mRNA-1:cds;Parent=Msa0036710-mRNA-1
Gene Sequence

>Msa0036710

ATGCAAACTCATCATCAGTACTACTCATTCTCTTGTGAGAGTCCCTCTTGCAGCAGCAGCTTAGATGATGAAGATTCCATCTTCCTCTCTCTTGCTCCTCCTGGCCACCAAATACCTCCCAAACTCGCACCCCCTCATCCCACTATTACTACTACTATCCCTCCCTTGCATCAAATACCTATTTCTACTACTACCTCTCTTCACCATGACCATACTTGTGCTGTAAATGTAGCACTTAATGCCTTAATTAATCCAACTTTCACTTCCAAACCATCTCACACTCCCATTATTCCTCAATATTGGATCCCTTCTCCTGCTCAAATCCTTGTTGGTCCTACCCAGTTTTCTTGCACTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCTCAATATAGGAAAGGACCGGAGTCTCTAAAAGGGCCAAAACCAGCATCATCTTCATCAATGCTGAAACTACCATGTTACTGTTGTGCTGAGGGTTGCAGAAACAACATAAACTATCCAAGGGCAAGACCACTGAAAGATTTCAGAACCCTTCAAACACACTACAAAAGAAAGCATGGAGGGAAGTCATTCGAGTGTAGGAAGTGTAGGAAGTCATTTGCTGTGAGAGGAGATTGGAGGACACATGAGAAGAATTGTGGGAAGCTTTGGTTTTGTATCTGTGGTTCTGATTTCAAACACAAAAGATCACTAAAAGATCACGTTCGTGCGTTTGGTAATGGCCATGCTCCCCACACGTTGGAATCTTTGAGTTTTGATGGACATAAAGTAAATGAAAATTACATGGAAGAAGAAGAAACTGGAAGTGAAGATGAAGACAATAACAGTGAAGTTGTTTTTAGTTTGAATTAA
Protein sequence

>Msa0036710

MQTHHQYYSFSCESPSCSSSLDDEDSIFLSLAPPGHQIPPKLAPPHPTITTTIPPLHQIPISTTTSLHHDHTCAVNVALNALINPTFTSKPSHTPIIPQYWIPSPAQILVGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGPKPASSSSMLKLPCYCCAEGCRNNINYPRARPLKDFRTLQTHYKRKHGGKSFECRKCRKSFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESLSFDGHKVNENYMEEEETGSEDEDNNSEVVFSLN*