AlfalfaGEDB | Msa0036710

M. sativa cultivar zhongmu-4 / Msa0036710

KEGG: -
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009812 GO:0009813 GO:0009888 GO:0009889 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1901576 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0036710	XP_013469412.1	97.279	294	8	0	1	294	1	294	0.0	603

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0036710	sp\|Q9FX68\|ZWIP6_ARATH	65.447	246	61	5	23	258	12	243	5.53e-107	316

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0036710	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0036710	MtrunA17_Chr1g0198651	97.251	291	8	0	1	291	1	291	0.0	598
Msa0036710	MtrunA17_Chr5g0422571	62.633	281	90	5	1	275	1	272	1.54e-113	329
Msa0036710	MtrunA17_Chr1g0173841	65.094	212	60	2	75	286	188	385	1.91e-99	297
Msa0036710	MtrunA17_Chr7g0258011	71.809	188	39	2	99	286	173	346	2.03e-99	295
Msa0036710	MtrunA17_Chr2g0328921	71.429	189	40	3	99	286	135	310	1.76e-96	286
Msa0036710	MtrunA17_Chr8g0352011	69.730	185	42	2	99	283	163	333	2.74e-96	287
Msa0036710	MtrunA17_Chr2g0321291	69.841	189	41	4	99	284	130	305	7.18e-96	285
Msa0036710	MtrunA17_Chr4g0026521	68.254	189	45	4	99	284	115	291	1.96e-95	283
Msa0036710	MtrunA17_Chr4g0053341	68.391	174	50	2	87	260	61	229	1.18e-86	259
Msa0036710	MtrunA17_Chr1g0200421	41.447	152	83	6	107	255	244	392	5.71e-27	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0036710	AT1G13290.1	65.447	246	61	5	23	258	12	243	5.62e-108	316
Msa0036710	AT3G57670.1	71.429	196	40	4	99	292	201	382	5.35e-98	293
Msa0036710	AT1G51220.1	75.152	165	38	1	100	264	163	324	5.89e-95	284
Msa0036710	AT3G20880.1	77.987	159	32	1	97	255	238	393	5.78e-94	284
Msa0036710	AT1G08290.1	73.810	168	38	3	99	265	164	326	4.23e-93	279
Msa0036710	AT1G34790.1	75.159	157	36	1	100	256	130	283	7.47e-88	265
Msa0036710	AT1G34370.3	41.176	153	84	5	107	255	27	177	3.13e-26	105
Msa0036710	AT1G34370.2	41.176	153	84	5	107	255	237	387	1.28e-25	106
Msa0036710	AT1G34370.1	41.176	153	84	5	107	255	237	387	1.28e-25	106
Msa0036710	AT5G22890.1	40.645	155	84	7	106	255	209	360	1.50e-24	102

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Find 81 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGGGTAGGACCAACA+AGG	0.677453	1_1:-65380339	None:intergenic
AAACAACATAAACTATCCAA+GGG	0.649476	1_1:+65380783	Msa0036710:CDS
AAAGATCACGTTCGTGCGTT+TGG	0.349116	1_1:+65380994	Msa0036710:CDS
AAAGGACCGGAGTCTCTAAA+AGG	0.306782	1_1:+65380694	Msa0036710:CDS
AACTCAAAGATTCCAACGTG+TGG	0.551951	1_1:-65381032	None:intergenic
AAGGACCGGAGTCTCTAAAA+GGG	0.557565	1_1:+65380695	Msa0036710:CDS
AATGGGAGTGTGAGATGGTT+TGG	0.355414	1_1:-65380281	None:intergenic
ACAAGGATTTGAGCAGGAGA+AGG	0.531708	1_1:-65380322	None:intergenic
ACACACTACAAAAGAAAGCA+TGG	0.577637	1_1:+65380838	Msa0036710:CDS
ACAGTGCAAGAAAACTGGGT+AGG	0.667615	1_1:-65380349	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAATAGGTATTTGATGCAA+GGG	-	chr1_1:65380181-65380200	None:intergenic	30.0%
AGAAATAGGTATTTGATGCA+AGG	-	chr1_1:65380182-65380201	None:intergenic	30.0%
GATCCAATATTGAGGAATAA+TGG	-	chr1_1:65380302-65380321	None:intergenic	30.0%
TCATTCATGGAAGAAAAGTA+AGG	-	chr1_1:65380556-65380575	None:intergenic	30.0%
AGCTCAATATGATTCATTCA+TGG	-	chr1_1:65380569-65380588	None:intergenic	30.0%
GAAACAACATAAACTATCCA+AGG	+	chr1_1:65380782-65380801	Msa0036710:CDS	30.0%
GAAATAGGTATTTGATGCAA+GGG	-	chr1_1:65380181-65380200	None:intergenic	30.0%
AGAAATAGGTATTTGATGCA+AGG	-	chr1_1:65380182-65380201	None:intergenic	30.0%
GATCCAATATTGAGGAATAA+TGG	-	chr1_1:65380302-65380321	None:intergenic	30.0%
TCATTCATGGAAGAAAAGTA+AGG	-	chr1_1:65380556-65380575	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	65380016	65381152	65380016	ID=Msa0036710;Name=Msa0036710
chr1_1	mRNA	65380016	65381152	65380016	ID=Msa0036710-mRNA-1;Parent=Msa0036710;Name=Msa0036710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|2\|0\|294
chr1_1	exon	65380016	65380408	65380016	ID=Msa0036710-mRNA-1:exon:21045;Parent=Msa0036710-mRNA-1
chr1_1	exon	65380661	65381152	65380661	ID=Msa0036710-mRNA-1:exon:21046;Parent=Msa0036710-mRNA-1
chr1_1	CDS	65380016	65380408	65380016	ID=Msa0036710-mRNA-1:cds;Parent=Msa0036710-mRNA-1
chr1_1	CDS	65380661	65381152	65380661	ID=Msa0036710-mRNA-1:cds;Parent=Msa0036710-mRNA-1

Gene Sequence

>Msa0036710

ATGCAAACTCATCATCAGTACTACTCATTCTCTTGTGAGAGTCCCTCTTGCAGCAGCAGCTTAGATGATGAAGATTCCATCTTCCTCTCTCTTGCTCCTCCTGGCCACCAAATACCTCCCAAACTCGCACCCCCTCATCCCACTATTACTACTACTATCCCTCCCTTGCATCAAATACCTATTTCTACTACTACCTCTCTTCACCATGACCATACTTGTGCTGTAAATGTAGCACTTAATGCCTTAATTAATCCAACTTTCACTTCCAAACCATCTCACACTCCCATTATTCCTCAATATTGGATCCCTTCTCCTGCTCAAATCCTTGTTGGTCCTACCCAGTTTTCTTGCACTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCTCAATATAGGAAAGGACCGGAGTCTCTAAAAGGGCCAAAACCAGCATCATCTTCATCAATGCTGAAACTACCATGTTACTGTTGTGCTGAGGGTTGCAGAAACAACATAAACTATCCAAGGGCAAGACCACTGAAAGATTTCAGAACCCTTCAAACACACTACAAAAGAAAGCATGGAGGGAAGTCATTCGAGTGTAGGAAGTGTAGGAAGTCATTTGCTGTGAGAGGAGATTGGAGGACACATGAGAAGAATTGTGGGAAGCTTTGGTTTTGTATCTGTGGTTCTGATTTCAAACACAAAAGATCACTAAAAGATCACGTTCGTGCGTTTGGTAATGGCCATGCTCCCCACACGTTGGAATCTTTGAGTTTTGATGGACATAAAGTAAATGAAAATTACATGGAAGAAGAAGAAACTGGAAGTGAAGATGAAGACAATAACAGTGAAGTTGTTTTTAGTTTGAATTAA

Protein sequence

>Msa0036710

MQTHHQYYSFSCESPSCSSSLDDEDSIFLSLAPPGHQIPPKLAPPHPTITTTIPPLHQIPISTTTSLHHDHTCAVNVALNALINPTFTSKPSHTPIIPQYWIPSPAQILVGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGPKPASSSSMLKLPCYCCAEGCRNNINYPRARPLKDFRTLQTHYKRKHGGKSFECRKCRKSFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESLSFDGHKVNENYMEEEETGSEDEDNNSEVVFSLN*