AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0036780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036780 MtrunA17_Chr1g0193321 96.671 721 22 1 1 719 1 721 0.0 1437
Msa0036780 MtrunA17_Chr7g0271251 48.985 739 283 17 1 708 2 677 0.0 600
Msa0036780 MtrunA17_Chr1g0182791 61.333 150 54 2 395 544 254 399 1.68e-43 165
Msa0036780 MtrunA17_Chr7g0262691 55.000 160 53 5 396 542 185 338 5.73e-37 144
Msa0036780 MtrunA17_Chr3g0095391 61.654 133 39 5 425 557 276 396 1.21e-36 144
Msa0036780 MtrunA17_Chr7g0270871 50.314 159 71 3 407 561 152 306 1.32e-33 132
Msa0036780 MtrunA17_Chr5g0402031 50.336 149 60 2 402 549 59 194 6.87e-28 115
Msa0036780 MtrunA17_Chr1g0153241 65.882 85 29 0 454 538 79 163 1.63e-27 112
Msa0036780 MtrunA17_Chr7g0231461 55.435 92 40 1 432 522 268 359 6.93e-23 102
Msa0036780 MtrunA17_Chr4g0074161 55.405 74 29 1 462 531 208 281 1.01e-18 89.4
Msa0036780 MtrunA17_Chr1g0190731 52.857 70 29 1 462 527 195 264 1.34e-16 82.0
Msa0036780 MtrunA17_Chr1g0152131 47.945 73 37 1 462 533 262 334 1.60e-15 79.7
Msa0036780 MtrunA17_Chr5g0393721 35.294 119 61 3 444 561 207 310 2.19e-15 78.2
Msa0036780 MtrunA17_Chr8g0363921 50.000 64 31 1 462 524 153 216 1.49e-14 74.7
Msa0036780 MtrunA17_Chr3g0144641 45.205 73 39 1 462 533 193 265 2.35e-14 75.9
Msa0036780 MtrunA17_Chr8g0365941 42.105 95 47 3 462 548 307 401 3.88e-14 75.5
Msa0036780 MtrunA17_Chr5g0421111 46.575 73 38 1 462 533 367 439 4.20e-14 75.9
Msa0036780 MtrunA17_Chr7g0234761 51.562 64 30 1 462 524 319 382 4.85e-14 75.5
Msa0036780 MtrunA17_Chr1g0207311 36.538 104 46 3 463 561 194 282 4.99e-14 73.2
Msa0036780 MtrunA17_Chr5g0415291 38.583 127 63 5 409 524 55 177 5.34e-14 72.4
Msa0036780 MtrunA17_Chr4g0035101 45.205 73 39 1 462 533 145 217 6.13e-14 73.9
Msa0036780 MtrunA17_Chr8g0339091 51.562 64 30 1 462 524 293 356 7.70e-14 74.7
Msa0036780 MtrunA17_Chr3g0131771 50.000 64 31 1 462 524 149 212 2.93e-13 71.6
Msa0036780 MtrunA17_Chr3g0134741 36.275 102 50 3 458 559 227 313 4.36e-13 70.9
Msa0036780 MtrunA17_Chr8g0385911 41.558 77 44 1 449 524 134 210 7.97e-13 70.5
Msa0036780 MtrunA17_Chr1g0207301 36.047 86 40 2 476 561 304 374 2.29e-12 69.3
Msa0036780 MtrunA17_Chr7g0258161 43.056 72 40 1 463 533 176 247 2.77e-12 68.9
Msa0036780 MtrunA17_Chr1g0152651 45.455 66 36 0 458 523 272 337 3.25e-12 68.9
Msa0036780 MtrunA17_Chr1g0174161 41.429 70 40 1 463 531 163 232 1.64e-11 66.2
Msa0036780 MtrunA17_Chr6g0484271 45.312 64 34 1 462 524 157 220 7.20e-11 63.5
Msa0036780 MtrunA17_Chr1g0184841 50.000 74 33 1 462 531 122 195 7.26e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036780 AT1G09530.3 35.541 619 222 24 1 595 1 466 5.19e-71 241
Msa0036780 AT1G09530.2 35.541 619 222 24 1 595 1 466 5.19e-71 241
Msa0036780 AT1G09530.5 35.541 619 222 24 1 595 1 466 5.19e-71 241
Msa0036780 AT1G09530.1 35.541 619 222 24 1 595 1 466 5.19e-71 241
Msa0036780 AT1G09530.4 35.541 619 222 24 1 595 1 466 5.19e-71 241
Msa0036780 AT1G09530.6 35.541 619 222 24 1 595 1 466 5.19e-71 241
Msa0036780 AT2G20180.7 47.458 177 72 5 399 572 153 311 1.46e-34 137
Msa0036780 AT2G20180.1 47.458 177 72 5 399 572 153 311 1.46e-34 137
Msa0036780 AT2G20180.5 47.458 177 72 5 399 572 153 311 1.46e-34 137
Msa0036780 AT2G46970.2 46.193 197 78 7 395 576 127 310 1.47e-34 136
Msa0036780 AT2G46970.1 46.193 197 78 7 395 576 158 341 2.04e-34 136
Msa0036780 AT2G46970.3 46.193 197 78 7 395 576 136 319 2.26e-34 135
Msa0036780 AT2G20180.4 47.458 177 72 5 399 572 224 382 6.53e-34 136
Msa0036780 AT2G20180.6 47.458 177 72 5 399 572 224 382 6.53e-34 136
Msa0036780 AT2G20180.2 47.458 177 72 5 399 572 224 382 6.53e-34 136
Msa0036780 AT2G20180.3 47.458 177 72 5 399 572 224 382 6.53e-34 136
Msa0036780 AT2G20180.8 52.381 126 47 3 399 521 224 339 2.23e-29 120
Msa0036780 AT4G28800.1 43.827 162 67 5 392 548 193 335 1.85e-27 116
Msa0036780 AT4G28790.1 43.709 151 65 4 421 564 244 381 1.11e-26 114
Msa0036780 AT4G36930.1 58.772 114 41 2 432 541 161 272 1.54e-26 112
Msa0036780 AT4G00050.2 59.140 93 34 2 432 523 79 168 2.95e-26 110
Msa0036780 AT4G00050.3 59.140 93 34 2 432 523 181 270 1.27e-25 110
Msa0036780 AT4G00050.1 59.140 93 34 2 432 523 181 270 1.41e-25 110
Msa0036780 AT5G67110.1 54.639 97 44 0 440 536 67 163 1.76e-24 102
Msa0036780 AT3G59060.1 47.552 143 60 3 425 555 212 351 2.97e-23 103
Msa0036780 AT3G59060.3 47.552 143 60 3 425 555 212 351 3.35e-23 103
Msa0036780 AT3G59060.2 47.552 143 60 3 425 555 212 351 3.35e-23 103
Msa0036780 AT3G59060.4 47.552 143 60 3 425 555 212 351 3.35e-23 103
Msa0036780 AT3G62090.1 46.341 123 48 2 460 573 165 278 4.98e-23 101
Msa0036780 AT4G28800.2 41.358 162 65 6 392 548 205 341 5.85e-23 103
Msa0036780 AT3G62090.2 46.341 123 48 2 460 573 182 295 1.15e-22 100
Msa0036780 AT4G28815.2 52.222 90 40 2 456 542 64 153 3.26e-22 96.7
Msa0036780 AT4G28815.1 48.958 96 46 2 450 542 134 229 1.93e-21 96.3
Msa0036780 AT2G43010.2 66.667 81 24 1 445 522 233 313 1.15e-20 95.9
Msa0036780 AT2G43010.1 66.667 81 24 1 445 522 233 313 1.23e-20 95.9
Msa0036780 AT2G43010.4 66.667 81 24 1 445 522 233 313 1.32e-20 95.5
Msa0036780 AT2G43010.3 66.667 81 24 1 445 522 240 320 1.41e-20 95.5
Msa0036780 AT2G43010.5 66.667 81 24 1 445 522 275 355 2.36e-20 95.5
Msa0036780 AT4G28790.2 48.000 100 40 2 421 520 244 331 8.83e-20 92.0
Msa0036780 AT2G24260.2 60.317 63 25 0 462 524 37 99 1.71e-19 89.0
Msa0036780 AT5G58010.1 53.947 76 31 1 462 533 101 176 3.30e-19 89.4
Msa0036780 AT2G24260.1 60.317 63 25 0 462 524 140 202 7.00e-19 89.4
Msa0036780 AT4G30980.1 58.730 63 26 0 462 524 132 194 1.37e-18 87.8
Msa0036780 AT5G61270.2 48.246 114 48 3 423 536 45 147 2.96e-18 86.3
Msa0036780 AT5G61270.3 48.246 114 48 3 423 536 45 147 2.96e-18 86.3
Msa0036780 AT4G30980.2 58.730 63 26 0 462 524 180 242 3.32e-18 87.4
Msa0036780 AT5G61270.1 48.246 114 48 3 423 536 133 235 5.39e-18 87.0
Msa0036780 AT4G28811.1 41.916 167 72 5 392 545 292 446 9.03e-17 84.7
Msa0036780 AT1G68920.1 31.795 195 103 6 357 533 195 377 2.66e-15 79.7
Msa0036780 AT1G68920.4 31.795 195 103 6 357 533 195 377 2.66e-15 79.7
Msa0036780 AT1G68920.2 31.795 195 103 6 357 533 195 377 2.66e-15 79.7
Msa0036780 AT1G68920.3 49.315 73 36 1 462 533 304 376 3.16e-15 79.3
Msa0036780 AT5G50915.3 53.125 64 29 1 462 524 138 201 3.64e-15 76.6
Msa0036780 AT5G50915.4 53.125 64 29 1 462 524 138 201 3.64e-15 76.6
Msa0036780 AT1G10120.2 47.945 73 37 1 462 533 208 280 4.53e-15 78.2
Msa0036780 AT1G10120.1 47.945 73 37 1 462 533 208 280 4.53e-15 78.2
Msa0036780 AT5G50915.1 53.125 64 29 1 462 524 138 201 5.34e-15 76.6
Msa0036780 AT5G50915.2 53.125 64 29 1 462 524 138 201 5.34e-15 76.6
Msa0036780 AT1G02340.2 47.727 88 44 2 474 559 134 221 8.31e-15 75.9
Msa0036780 AT1G02340.1 47.727 88 44 2 474 559 141 228 9.65e-15 75.9
Msa0036780 AT2G18300.1 45.333 75 40 1 462 535 187 261 2.04e-14 75.5
Msa0036780 AT2G18300.2 45.333 75 40 1 462 535 187 261 2.06e-14 75.5
Msa0036780 AT3G23690.1 44.156 77 42 1 462 537 193 269 2.14e-14 75.9
Msa0036780 AT4G36540.2 45.205 73 39 1 462 533 143 215 2.66e-14 74.7
Msa0036780 AT2G18300.3 44.156 77 42 1 462 537 187 263 2.80e-14 75.5
Msa0036780 AT4G36540.1 45.205 73 39 1 462 533 143 215 2.83e-14 74.7
Msa0036780 AT5G62610.2 51.562 64 30 1 462 524 155 218 4.15e-14 73.9
Msa0036780 AT5G62610.1 51.562 64 30 1 462 524 155 218 4.15e-14 73.9
Msa0036780 AT1G59640.1 50.000 64 31 1 462 524 138 201 5.76e-14 73.2
Msa0036780 AT3G07340.2 51.562 64 30 1 462 524 260 323 5.87e-14 75.1
Msa0036780 AT2G14760.1 38.462 104 49 3 458 561 235 323 5.89e-14 74.3
Msa0036780 AT3G07340.1 51.562 64 30 1 462 524 260 323 7.35e-14 75.1
Msa0036780 AT2G14760.3 37.931 116 51 4 452 561 236 336 7.52e-14 73.9
Msa0036780 AT5G48560.2 51.562 64 30 1 462 524 303 366 1.01e-13 74.7
Msa0036780 AT5G48560.1 51.562 64 30 1 462 524 303 366 1.22e-13 74.7
Msa0036780 AT4G33880.1 40.000 100 45 3 458 557 264 348 1.26e-13 73.6
Msa0036780 AT4G34530.1 41.667 72 41 1 462 532 174 245 1.74e-13 72.8
Msa0036780 AT1G26260.5 48.438 64 32 1 462 524 203 266 2.80e-13 72.8
Msa0036780 AT1G26260.3 48.438 64 32 1 462 524 174 237 2.91e-13 72.0
Msa0036780 AT5G43175.1 41.250 80 39 2 451 530 130 201 2.98e-13 70.1
Msa0036780 AT2G42300.4 43.836 73 40 1 462 533 187 259 3.05e-13 71.2
Msa0036780 AT1G26260.4 48.438 64 32 1 462 524 225 288 3.25e-13 72.4
Msa0036780 AT1G26260.1 48.438 64 32 1 462 524 225 288 3.25e-13 72.4
Msa0036780 AT1G26260.6 48.438 64 32 1 462 524 225 288 3.25e-13 72.4
Msa0036780 AT1G26260.2 48.438 64 32 1 462 524 225 288 3.25e-13 72.4
Msa0036780 AT1G59640.2 50.000 64 31 1 462 524 138 201 3.62e-13 72.0
Msa0036780 AT1G27740.1 36.066 122 58 5 440 561 152 253 5.55e-13 70.1
Msa0036780 AT2G42300.1 43.836 73 40 1 462 533 187 259 5.71e-13 71.2
Msa0036780 AT3G57800.2 42.466 73 41 1 462 533 206 278 1.82e-12 70.1
Msa0036780 AT1G18400.2 46.875 64 33 1 462 524 147 210 2.09e-12 68.2
Msa0036780 AT1G18400.1 46.875 64 33 1 462 524 147 210 2.61e-12 68.2
Msa0036780 AT1G25330.1 45.312 64 34 1 462 524 106 169 3.99e-12 67.0
Msa0036780 AT1G73830.2 43.750 64 35 1 462 524 149 212 1.13e-11 66.2
Msa0036780 AT1G73830.1 43.750 64 35 1 462 524 149 212 1.14e-11 66.2

Find 231 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGAAAATTGCACAGATTT+TGG 0.143105 1_1:+65578704 Msa0036780:three_prime_UTR
GTAATGGGAATCAGATATTT+AGG 0.178802 1_1:+65575870 Msa0036780:CDS
AATGCAATATTTAAGAAGTT+TGG 0.188590 1_1:-65574548 None:intergenic
CGCCGCCTTCTTCGTCCATT+TGG 0.199275 1_1:+65574518 Msa0036780:five_prime_UTR
CTTTGTCTTCAAACTTCATT+TGG 0.201765 1_1:+65575106 Msa0036780:five_prime_UTR
GATCTTTCATAGTGATTCTT+TGG 0.204839 1_1:+65578824 Msa0036780:three_prime_UTR
CAACCTTCCATTCAAGTTCT+TGG 0.207186 1_1:+65576535 Msa0036780:CDS
TCACCAAACTTTCCTATCTT+TGG 0.207484 1_1:-65575662 None:intergenic
TGAATCAGTGGGAGTTAAAA+AGG 0.229978 1_1:+65576819 Msa0036780:CDS
CTAAACCATGGTTAATGTTT+TGG 0.237543 1_1:-65574411 None:intergenic
TACTCAAGGGTTTGGACTTC+CGG 0.238298 1_1:+65577911 Msa0036780:CDS
GGACACACAGCTGCTGAAAA+AGG 0.246020 1_1:+65576574 Msa0036780:CDS
TTCAGCAGCACGGCTTCTTT+TGG 0.263273 1_1:-65576869 None:intergenic
TAGCTGCAGGCCTTGCAAAA+TGG 0.265088 1_1:-65576213 None:intergenic
GAACCATTGCCAGGCATTAT+AGG 0.273673 1_1:-65576172 None:intergenic
AAAGATGAGAAACGACATTT+TGG 0.278685 1_1:-65578592 None:intergenic
AGAACCGATGAATATTTCTA+AGG 0.297567 1_1:+65575913 Msa0036780:CDS
GGCTCTTTGCAACACGAATA+TGG 0.299730 1_1:+65575773 Msa0036780:CDS
AAATATCCTCTTCAGTAATC+TGG 0.302622 1_1:-65578626 None:intergenic
ACCTTATGACAGCGCATTTC+CGG 0.308325 1_1:-65576397 None:intergenic
AAACTAACCTTATTGCAATT+AGG 0.311300 1_1:-65577075 None:intergenic
ATGCAATATTTAAGAAGTTT+GGG 0.315431 1_1:-65574547 None:intergenic
GCATTTGGTTCAAGCAATTT+CGG 0.321748 1_1:-65576457 None:intergenic
ATTATTAACTTACTTCACTA+TGG 0.325057 1_1:-65576714 None:intergenic
TTCCGTTTCAAATCTCGATT+TGG 0.325821 1_1:-65576664 None:intergenic
CATCTGTAACTGTTAGATCT+AGG 0.327984 1_1:+65576026 Msa0036780:CDS
GGTAACCAGGACGTGCCTTA+TGG 0.332319 1_1:+65576085 Msa0036780:CDS
AGCTGCAGGCCTTGCAAAAT+GGG 0.334857 1_1:-65576212 None:intergenic
AGGGATAAACAGACCTGGTT+AGG 0.337445 1_1:-65578152 None:intergenic
GCCGCCTTCTTCGTCCATTT+GGG 0.347498 1_1:+65574519 Msa0036780:five_prime_UTR
ATAAGAGGCCCTCCTGAAAA+AGG 0.349955 1_1:-65577975 None:intergenic
ACTCAAGGGTTTGGACTTCC+GGG 0.350946 1_1:+65577912 Msa0036780:CDS
AATGCTAATACTAAGAGCTT+TGG 0.360151 1_1:+65575173 Msa0036780:five_prime_UTR
AATCCAAAGATAGGAAAGTT+TGG 0.360484 1_1:+65575659 Msa0036780:CDS
GATAACTTCTGAGTTGCATT+TGG 0.361157 1_1:+65574606 Msa0036780:five_prime_UTR
TAAGGGTTCTTCAGCTGAAC+AGG 0.362772 1_1:+65575931 Msa0036780:CDS
CACTATGAAAGATCTGAATA+AGG 0.369825 1_1:-65578815 None:intergenic
CAGTGACACACGCACACAAC+TGG 0.374364 1_1:-65574464 None:intergenic
GCCTCTTCTTCTGTTTGCTC+TGG 0.374903 1_1:+65576613 Msa0036780:CDS
AGAATCAGTGTCACTGTATT+CGG 0.376615 1_1:+65574760 Msa0036780:five_prime_UTR
AGTAATAACAATCCAAAGAT+AGG 0.377772 1_1:+65575650 Msa0036780:CDS
TCTTTATGAGTTATACCGTT+TGG 0.379797 1_1:+65575267 Msa0036780:CDS
ATGGGGTTAGGTATGGGTTA+TGG 0.384832 1_1:+65577756 Msa0036780:CDS
CATGCCAATGCCGCATGCTC+CGG 0.385852 1_1:+65577947 Msa0036780:CDS
ATCTGAGGTACTTGAATCAT+TGG 0.390961 1_1:-65577819 None:intergenic
GTAACCAGGACGTGCCTTAT+GGG 0.391349 1_1:+65576086 Msa0036780:CDS
CATGCATATGGGGTTAGGTA+TGG 0.391760 1_1:+65577749 Msa0036780:CDS
TTAATTTGTGAGTCCACATC+TGG 0.393466 1_1:-65578092 None:intergenic
ACTCATACCTAATTGCAATA+AGG 0.396247 1_1:+65577068 Msa0036780:CDS
GATGGGCATCGGCATGCATA+TGG 0.396774 1_1:+65577737 Msa0036780:CDS
TGTTTAGTAGCTACAGCATT+TGG 0.397325 1_1:-65576472 None:intergenic
GTTATAGGAGTTAAGAATAA+AGG 0.400952 1_1:+65576304 Msa0036780:CDS
TGACAGTGAAGCTGCTAATC+CGG 0.402149 1_1:+65578356 Msa0036780:CDS
GCGGCTGGACGAGGAGTTGC+AGG 0.404515 1_1:+65576844 Msa0036780:CDS
GGGCAATATAAATTTGTGAT+TGG 0.408220 1_1:+65578377 Msa0036780:exon
TCCTTTGAACACTCACCGCT+TGG 0.414948 1_1:-65576373 None:intergenic
CAGTCAACTTTGGTGCATAA+TGG 0.417435 1_1:+65578312 Msa0036780:intron
AGATCGAATACTCAAGGGTT+TGG 0.418683 1_1:+65577903 Msa0036780:CDS
AATGCCGGAGCATGCGGCAT+TGG 0.422731 1_1:-65577951 None:intergenic
TCAGCAAGATCAGATGTTAT+AGG 0.425064 1_1:+65576289 Msa0036780:CDS
AACAGACCTGGTTAGGGATC+TGG 0.426475 1_1:-65578145 None:intergenic
GAATGATATTTACTTGAACT+TGG 0.428430 1_1:-65577544 None:intergenic
CGGTGAGTGTTCAAAGGAAC+CGG 0.431291 1_1:+65576378 Msa0036780:CDS
TACCTCTACTTGATTGACCT+TGG 0.431493 1_1:-65575538 None:intergenic
GCTCCGGGTCCGTCTGTGTA+TGG 0.432008 1_1:+65578008 Msa0036780:CDS
TCTTCTGTTTGCTCTGGCAA+TGG 0.432421 1_1:+65576619 Msa0036780:CDS
TTTGAGCTGGTTTGGGAGAG+TGG 0.433011 1_1:+65575503 Msa0036780:CDS
GGTCCAGGCATATGCGCAAC+GGG 0.433702 1_1:-65577858 None:intergenic
CTTCATTTGGATTCCAAAGG+TGG 0.435654 1_1:+65575119 Msa0036780:five_prime_UTR
AGGGTTTGGACTTCCGGGAC+AGG 0.436904 1_1:+65577917 Msa0036780:CDS
GACGGCCCGCCGTTCATGTC+AGG 0.437600 1_1:-65577789 None:intergenic
CAGAACATAGGCTTGAAGTC+TGG 0.440984 1_1:+65576253 Msa0036780:CDS
CTGATTCTCGGCTGAGATCA+AGG 0.445045 1_1:-65574745 None:intergenic
TCGCGAGATGGCACCGACAT+TGG 0.449982 1_1:-65575710 None:intergenic
ATTGCTTCCAACATATTCTT+CGG 0.452650 1_1:-65575153 None:intergenic
CTTGGTGACAATGGCGCTAA+AGG 0.455067 1_1:+65576553 Msa0036780:CDS
ATGCCCGTTGCGCATATGCC+TGG 0.457121 1_1:+65577855 Msa0036780:CDS
ACCGGAAATGCGCTGTCATA+AGG 0.458097 1_1:+65576396 Msa0036780:CDS
TAATGGGAATCAGATATTTA+GGG 0.459406 1_1:+65575871 Msa0036780:CDS
TCGTGGCTAGTAGAAGAATC+AGG 0.460029 1_1:+65578553 Msa0036780:three_prime_UTR
GGATTAACAAGAGCTGAATC+AGG 0.461722 1_1:-65576352 None:intergenic
TTAGGTATGGGTTATGGAAT+GGG 0.462375 1_1:+65577762 Msa0036780:CDS
AAGTTTGGTGATTTAGACTC+TGG 0.465005 1_1:+65575674 Msa0036780:CDS
AATACAGTGACACTGATTCT+CGG 0.465480 1_1:-65574757 None:intergenic
ATTACATTGGAACCATTGCC+AGG 0.465626 1_1:-65576181 None:intergenic
TGGATTTAAACAGTCAACTT+TGG 0.465882 1_1:+65578302 Msa0036780:intron
ATGGGCATCGGCATGCATAT+GGG 0.467830 1_1:+65577738 Msa0036780:CDS
GTAGAAAGAGTCCATCTTGT+AGG 0.469763 1_1:+65575558 Msa0036780:CDS
ACATGTTGAAGCTGTGAATC+CGG 0.471250 1_1:+65578040 Msa0036780:CDS
GCCTTGGTTGGATTATTCAA+TGG 0.473067 1_1:+65575748 Msa0036780:CDS
ATTCCATTCTCTTTGCAAGC+AGG 0.474924 1_1:-65576502 None:intergenic
TCTTATGAACTCATCCGCTC+CGG 0.478517 1_1:+65577992 Msa0036780:CDS
AATCACAAATTTATATTGCC+CGG 0.480981 1_1:-65578375 None:intergenic
TGGTTGGATTATTCAATGGA+TGG 0.481215 1_1:+65575752 Msa0036780:CDS
CAAAGGTTTCAAATCAGCCT+TGG 0.482518 1_1:-65576431 None:intergenic
CAATAGAGTAAAACTATTTG+AGG 0.483612 1_1:-65575837 None:intergenic
CCAGCAGGTAACATCATTTG+AGG 0.491436 1_1:-65577672 None:intergenic
AAACTTCATTTGGATTCCAA+AGG 0.498356 1_1:+65575116 Msa0036780:five_prime_UTR
ATGCATATGGGGTTAGGTAT+GGG 0.501740 1_1:+65577750 Msa0036780:CDS
AGTTTATTGTGGCTTACGAC+AGG 0.502272 1_1:+65575075 Msa0036780:intron
ATTGTCACCAAGAACTTGAA+TGG 0.502299 1_1:-65576542 None:intergenic
ATCCAAATCGAGATTTGAAA+CGG 0.502394 1_1:+65576662 Msa0036780:CDS
TTTGAGCCACACGCTGAAGC+CGG 0.503540 1_1:-65578059 None:intergenic
ATCTCACTCATAGTTTATTG+TGG 0.506699 1_1:+65575064 Msa0036780:intron
CAAATTAAGCAAAACACTGC+TGG 0.508355 1_1:+65578107 Msa0036780:CDS
GACAGTGAAGCTGCTAATCC+GGG 0.512717 1_1:+65578357 Msa0036780:CDS
AAGCCTGCTTGCAAAGAGAA+TGG 0.512967 1_1:+65576499 Msa0036780:CDS
GTTTGACATTGATTCGATGA+TGG 0.513871 1_1:-65576001 None:intergenic
ATCGGCATGCATATGGGGTT+AGG 0.513942 1_1:+65577744 Msa0036780:CDS
CTTATGAACTCATCCGCTCC+GGG 0.516950 1_1:+65577993 Msa0036780:CDS
CCTCAAATGATGTTACCTGC+TGG 0.519335 1_1:+65577672 Msa0036780:CDS
ATCTGTAACTGTTAGATCTA+GGG 0.521505 1_1:+65576027 Msa0036780:CDS
GGTGGATAAAGCTTCTATGC+TGG 0.522318 1_1:+65577487 Msa0036780:intron
CGGAGCATGCGGCATTGGCA+TGG 0.522967 1_1:-65577946 None:intergenic
TCAAGCAATTTCGGCTGCAA+AGG 0.523909 1_1:-65576448 None:intergenic
TGATTTCTTTCATGAACTCA+CGG 0.530210 1_1:+65575799 Msa0036780:CDS
AAACGGTATAACTCATAAAG+AGG 0.530629 1_1:-65575265 None:intergenic
GGAGCGGATGAGTTCATAAG+AGG 0.531123 1_1:-65577990 None:intergenic
GGCATGGAAATTCCCTGTCC+CGG 0.531882 1_1:-65577930 None:intergenic
GGGTTTGGACTTCCGGGACA+GGG 0.531895 1_1:+65577918 Msa0036780:CDS
TCTTACGCAGATGATGTCAA+TGG 0.532008 1_1:+65577632 Msa0036780:intron
GAACCGATGAATATTTCTAA+GGG 0.532077 1_1:+65575914 Msa0036780:CDS
TCACCAAGAACTTGAATGGA+AGG 0.535249 1_1:-65576538 None:intergenic
GGGATAAACAGACCTGGTTA+GGG 0.536075 1_1:-65578151 None:intergenic
GTTAGGTATGGGTTATGGAA+TGG 0.536992 1_1:+65577761 Msa0036780:CDS
GCCAGAGCAAACAGAAGAAG+AGG 0.539271 1_1:-65576614 None:intergenic
AAGCAAGATCCTATAATGCC+TGG 0.540589 1_1:+65576163 Msa0036780:CDS
TGCATGTGCTGCATTCCAGC+AGG 0.541526 1_1:-65577687 None:intergenic
GTATACAGAGGCGAAGAGAC+AGG 0.541533 1_1:+65577016 Msa0036780:intron
TTAGCTCTCACAATAGCTGC+AGG 0.542020 1_1:-65576226 None:intergenic
AGAGTAAAACTATTTGAGGC+AGG 0.545061 1_1:-65575833 None:intergenic
GTGAATCCGGCTTCAGCGTG+TGG 0.545306 1_1:+65578053 Msa0036780:CDS
AGATGAAATGATGCCTTGGT+TGG 0.547275 1_1:+65575736 Msa0036780:CDS
ACTTTAATTGAAGGATGTTG+AGG 0.547453 1_1:+65576795 Msa0036780:intron
CCGTCTGTGTATGGATCCAC+AGG 0.548020 1_1:+65578017 Msa0036780:CDS
GGTTTCAAATCAGCCTTGGA+TGG 0.548035 1_1:-65576427 None:intergenic
ACGTCTTTATCTCGACCTCT+AGG 0.548572 1_1:-65575614 None:intergenic
TATCCCCATAAGGCACGTCC+TGG 0.548638 1_1:-65576090 None:intergenic
TAATGTTAGCAGTGGTAACC+AGG 0.548677 1_1:+65576072 Msa0036780:CDS
AAACCCTTGAGTATTCGATC+TGG 0.548724 1_1:-65577901 None:intergenic
AGTGCATAATCTATCTGAAA+GGG 0.548993 1_1:+65576891 Msa0036780:CDS
AAGGTTTCTATTCTAAACCA+TGG 0.549756 1_1:-65574423 None:intergenic
GATAACACCGAAGAATATGT+TGG 0.549773 1_1:+65575146 Msa0036780:five_prime_UTR
AAGTTTGGGAATGACCCAAA+TGG 0.550042 1_1:-65574533 None:intergenic
GCACATGCATGCACCACACA+TGG 0.551028 1_1:+65577701 Msa0036780:CDS
GACTAACGGCGCAAGTGTAG+CGG 0.551051 1_1:+65575312 Msa0036780:CDS
CCTGGACCCTCTGCTATGCA+TGG 0.553478 1_1:+65577873 Msa0036780:CDS
GAATGCCTGACATGAACGGC+GGG 0.554517 1_1:+65577784 Msa0036780:CDS
CGAGATAAAGACGTAGGAGG+AGG 0.554717 1_1:+65575623 Msa0036780:CDS
ATTCAAGTTCTTGGTGACAA+TGG 0.555532 1_1:+65576544 Msa0036780:CDS
CTTACGCAGATGATGTCAAT+GGG 0.556698 1_1:+65577633 Msa0036780:intron
ATTTCATCTACTTCGCGAGA+TGG 0.557156 1_1:-65575722 None:intergenic
ATGCGAGTAATATCCCCATA+AGG 0.560313 1_1:-65576100 None:intergenic
TTCAAACCAGATTACTGAAG+AGG 0.561206 1_1:+65578620 Msa0036780:three_prime_UTR
CAAGCTTCTCTCTAGCCAAA+CGG 0.561344 1_1:-65575282 None:intergenic
AGATTATTCACACAACAAGA+AGG 0.563365 1_1:-65574642 None:intergenic
AGAGCTAATCTTCAGAACAT+AGG 0.563549 1_1:+65576241 Msa0036780:CDS
TAATGGTGGCCATGCTTCAG+TGG 0.563671 1_1:+65578329 Msa0036780:CDS
TAAAGCTTCTATGCTGGATG+AGG 0.564004 1_1:+65577493 Msa0036780:CDS
GAACTAATCAGCATATAAGT+CGG 0.565968 1_1:-65574798 None:intergenic
TACAAGCCAGATCCCTAACC+AGG 0.569454 1_1:+65578139 Msa0036780:CDS
CAGATGATGTCAATGGGAGC+TGG 0.570696 1_1:+65577639 Msa0036780:intron
TTTACCTGTCAAAATAGCCA+TGG 0.570700 1_1:+65578663 Msa0036780:three_prime_UTR
GGGTCCAGGCATATGCGCAA+CGG 0.570830 1_1:-65577859 None:intergenic
ATATGATTTCCTTGCATCTG+AGG 0.571553 1_1:-65577834 None:intergenic
CCATGCATAGCAGAGGGTCC+AGG 0.572604 1_1:-65577873 None:intergenic
GTGTGCGTGTGTCACTGCAT+TGG 0.574052 1_1:+65574470 Msa0036780:five_prime_UTR
CTTAACCAAAACATTAACCA+TGG 0.575886 1_1:+65574406 Msa0036780:five_prime_UTR
GTCACTTACTTTACTTGACA+AGG 0.577238 1_1:+65574857 Msa0036780:five_prime_UTR
AAAGGAAATGCCGGAGCATG+CGG 0.577573 1_1:-65577957 None:intergenic
TTCGGAAACTAGAATTCCCA+TGG 0.580514 1_1:-65578680 None:intergenic
ATGGCCAGATCGAATACTCA+AGG 0.580647 1_1:+65577897 Msa0036780:CDS
GAACCCTTAGAAATATTCAT+CGG 0.581063 1_1:-65575917 None:intergenic
TCCAAGCGGTGAGTGTTCAA+AGG 0.581477 1_1:+65576372 Msa0036780:CDS
ACCCTCTGCTATGCATGGAA+TGG 0.583329 1_1:+65577878 Msa0036780:CDS
ATGACCCAAATGGACGAAGA+AGG 0.585238 1_1:-65574523 None:intergenic
TGGGCATCGGCATGCATATG+GGG 0.587722 1_1:+65577739 Msa0036780:CDS
GAAAATAATAATGTTAGCAG+TGG 0.593251 1_1:+65576064 Msa0036780:CDS
AAAAGATCGAAGGCCAGATG+TGG 0.594060 1_1:+65578079 Msa0036780:CDS
GATCCTATAATGCCTGGCAA+TGG 0.595775 1_1:+65576169 Msa0036780:CDS
AAGTGCATAATCTATCTGAA+AGG 0.598272 1_1:+65576890 Msa0036780:CDS
GCAAGACATAAAGCTAGTGC+CGG 0.602436 1_1:+65575965 Msa0036780:CDS
TAAAACTATTTGAGGCAGGA+AGG 0.602999 1_1:-65575829 None:intergenic
GATTATGCACTTCAGCAGCA+CGG 0.604449 1_1:-65576879 None:intergenic
CAATGGTGCAGACAGAGGCT+CGG 0.605241 1_1:+65576636 Msa0036780:CDS
TGAGATGGTAAGCAGTGAGA+TGG 0.605275 1_1:-65575587 None:intergenic
CACAGCTTCAACATGTCCTG+TGG 0.605340 1_1:-65578033 None:intergenic
GCCATTCCATGCATAGCAGA+GGG 0.607653 1_1:-65577879 None:intergenic
AGCCAAGGTCAATCAAGTAG+AGG 0.608356 1_1:+65575536 Msa0036780:CDS
GATCCATACACAGACGGACC+CGG 0.610764 1_1:-65578011 None:intergenic
GATGGCAAACTCCTACAAGA+TGG 0.610890 1_1:-65575569 None:intergenic
TCTGGCAATGGTGCAGACAG+AGG 0.613703 1_1:+65576631 Msa0036780:CDS
TAACCAGGACGTGCCTTATG+GGG 0.616802 1_1:+65576087 Msa0036780:CDS
TGTTAATGAACTTACGACGA+AGG 0.616840 1_1:-65575340 None:intergenic
AGTGACACACGCACACAACT+GGG 0.616845 1_1:-65574463 None:intergenic
TGTCATCAGCCACTGAAGCA+TGG 0.619461 1_1:-65578338 None:intergenic
TTACCTGTCAAAATAGCCAT+GGG 0.619641 1_1:+65578664 Msa0036780:three_prime_UTR
ATTCAAGTACCTCAGATGCA+AGG 0.620716 1_1:+65577825 Msa0036780:CDS
GGCCATTCCATGCATAGCAG+AGG 0.624817 1_1:-65577880 None:intergenic
GATGTTGAGGATGAATCAGT+GGG 0.625050 1_1:+65576808 Msa0036780:CDS
TCAGCTCTTGTTAATCCAAG+CGG 0.627460 1_1:+65576358 Msa0036780:CDS
TGATGGCGGATATAACTGAC+CGG 0.631000 1_1:-65575984 None:intergenic
GGTCGAGATAAAGACGTAGG+AGG 0.631029 1_1:+65575620 Msa0036780:CDS
TGAATCATTGGAAATCTAGA+CGG 0.631570 1_1:-65577807 None:intergenic
ATCAGTGTCACTGTATTCGG+AGG 0.632909 1_1:+65574763 Msa0036780:five_prime_UTR
AAGCTTGATAATGAGACTAA+CGG 0.634639 1_1:+65575298 Msa0036780:CDS
CGTGTGGCTCAAAAGATCGA+AGG 0.637154 1_1:+65578069 Msa0036780:CDS
TCAACTTTGGTGCATAATGG+TGG 0.640234 1_1:+65578315 Msa0036780:CDS
GGATGTTGAGGATGAATCAG+TGG 0.640619 1_1:+65576807 Msa0036780:intron
TTACCATCTCATAGTCCTAG+AGG 0.648723 1_1:+65575599 Msa0036780:CDS
CGACCTCTAGGACTATGAGA+TGG 0.648898 1_1:-65575602 None:intergenic
AGTGGTCAGATTTCAAGCCA+AGG 0.648899 1_1:+65575521 Msa0036780:CDS
ATGGGAATGCCTGACATGAA+CGG 0.649844 1_1:+65577780 Msa0036780:CDS
GGAAATGCGCTGTCATAAGG+TGG 0.651300 1_1:+65576399 Msa0036780:CDS
AAGTAGATGAAATGATGCCT+TGG 0.653879 1_1:+65575732 Msa0036780:CDS
TCCATTGAATAATCCAACCA+AGG 0.654964 1_1:-65575749 None:intergenic
TGACATTGATTCGATGATGG+CGG 0.655078 1_1:-65575998 None:intergenic
TAAGGTGGTAGAGCCATCCA+AGG 0.655378 1_1:+65576414 Msa0036780:CDS
TGTGAAAATGCGGCCATGTG+TGG 0.658564 1_1:-65577714 None:intergenic
ACCCAAATGGACGAAGAAGG+CGG 0.661772 1_1:-65574520 None:intergenic
GGAATGCCTGACATGAACGG+CGG 0.663426 1_1:+65577783 Msa0036780:CDS
TGGCCAGATCGAATACTCAA+GGG 0.668407 1_1:+65577898 Msa0036780:CDS
TTGATACTCTGCATTGATCG+TGG 0.671849 1_1:+65578536 Msa0036780:three_prime_UTR
ATGATGTTAAGATATATAAG+TGG 0.675860 1_1:-65578757 None:intergenic
AGAGGTCGAGATAAAGACGT+AGG 0.676780 1_1:+65575617 Msa0036780:CDS
CCTGTGGATCCATACACAGA+CGG 0.678896 1_1:-65578017 None:intergenic
TTAACAAGAGCTGAATCAGG+AGG 0.682638 1_1:-65576349 None:intergenic
ATTGAATGAGATTCCAATGT+CGG 0.685130 1_1:+65575697 Msa0036780:CDS
GATGCCCATCTGTGAAAATG+CGG 0.689000 1_1:-65577724 None:intergenic
ATACACAGACGGACCCGGAG+CGG 0.699444 1_1:-65578006 None:intergenic
ACGGAAAAGTAGAGACACTG+AGG 0.744015 1_1:+65576681 Msa0036780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGATTAAAAAATTAAGAT+TGG + chr1_1:65574828-65574847 Msa0036780:five_prime_UTR 10.0%
!! TATTGGATAAAAAAAGTAAT+GGG + chr1_1:65575855-65575874 Msa0036780:CDS 15.0%
!!! ATAATTTTATACAGTTTTTC+AGG - chr1_1:65577133-65577152 None:intergenic 15.0%
!! TGAAAAACTGTATAAAATTA+TGG + chr1_1:65577132-65577151 Msa0036780:intron 15.0%
!! CAAAAGATTTATGAAATTAT+TGG + chr1_1:65577246-65577265 Msa0036780:intron 15.0%
!!! ACTTAATTCCTTATTTATTT+CGG + chr1_1:65577441-65577460 Msa0036780:intron 15.0%
!! AGAATAACAGAAAATTATTA+CGG - chr1_1:65578224-65578243 None:intergenic 15.0%
!! ATGCAATATTTAAGAAGTTT+GGG - chr1_1:65574550-65574569 None:intergenic 20.0%
!! AATGCAATATTTAAGAAGTT+TGG - chr1_1:65574551-65574570 None:intergenic 20.0%
!!! TTCATTTATAAAGACTCTTT+TGG + chr1_1:65574956-65574975 Msa0036780:intron 20.0%
!!! TCATTTATAAAGACTCTTTT+GGG + chr1_1:65574957-65574976 Msa0036780:intron 20.0%
!!! TTTCTTAGTTTTGTTTGTTT+TGG + chr1_1:65575445-65575464 Msa0036780:intron 20.0%
!! CTATTGGATAAAAAAAGTAA+TGG + chr1_1:65575854-65575873 Msa0036780:CDS 20.0%
!!! ACTGCTAACATTATTATTTT+CGG - chr1_1:65576065-65576084 None:intergenic 20.0%
!! ATTATTAACTTACTTCACTA+TGG - chr1_1:65576717-65576736 None:intergenic 20.0%
!!! AGCTTATTTTATTTCCATTT+TGG + chr1_1:65576975-65576994 Msa0036780:intron 20.0%
!! ATCATAATTTATGTATACAG+AGG + chr1_1:65577004-65577023 Msa0036780:intron 20.0%
!! TGTTGACAAATATAGAATAT+TGG + chr1_1:65577169-65577188 Msa0036780:intron 20.0%
!! ATGATGTTAAGATATATAAG+TGG - chr1_1:65578760-65578779 None:intergenic 20.0%
!! CATTTATAAAGACTCTTTTG+GGG + chr1_1:65574958-65574977 Msa0036780:intron 25.0%
! TGTTTGATCATGAAATGAAA+TGG + chr1_1:65575400-65575419 Msa0036780:intron 25.0%
! AGTAATAACAATCCAAAGAT+AGG + chr1_1:65575650-65575669 Msa0036780:CDS 25.0%
! CAATAGAGTAAAACTATTTG+AGG - chr1_1:65575840-65575859 None:intergenic 25.0%
!!! CTCAAATAGTTTTACTCTAT+TGG + chr1_1:65575838-65575857 Msa0036780:CDS 25.0%
! TAATGGGAATCAGATATTTA+GGG + chr1_1:65575871-65575890 Msa0036780:CDS 25.0%
! GAAAATAATAATGTTAGCAG+TGG + chr1_1:65576064-65576083 Msa0036780:CDS 25.0%
! ATGGGAAAAATTCATTACAT+TGG - chr1_1:65576197-65576216 None:intergenic 25.0%
! GTTATAGGAGTTAAGAATAA+AGG + chr1_1:65576304-65576323 Msa0036780:CDS 25.0%
!!! CTTCAATTAAAGTGTTTTCT+TGG - chr1_1:65576788-65576807 None:intergenic 25.0%
! CAAGAAAACACTTTAATTGA+AGG + chr1_1:65576786-65576805 Msa0036780:intron 25.0%
! AAACTAACCTTATTGCAATT+AGG - chr1_1:65577078-65577097 None:intergenic 25.0%
! TTGAATACACTTCATGAATA+CGG - chr1_1:65577320-65577339 None:intergenic 25.0%
!!! TTTTTTTGAACAAGCCAAAA+TGG - chr1_1:65577369-65577388 None:intergenic 25.0%
! GAATGATATTTACTTGAACT+TGG - chr1_1:65577547-65577566 None:intergenic 25.0%
! AACTAAAATATTAATGCCGA+GGG - chr1_1:65577571-65577590 None:intergenic 25.0%
! AAACTAAAATATTAATGCCG+AGG - chr1_1:65577572-65577591 None:intergenic 25.0%
! AATCACAAATTTATATTGCC+CGG - chr1_1:65578378-65578397 None:intergenic 25.0%
CTTAACCAAAACATTAACCA+TGG + chr1_1:65574406-65574425 Msa0036780:five_prime_UTR 30.0%
! CTAAACCATGGTTAATGTTT+TGG - chr1_1:65574414-65574433 None:intergenic 30.0%
AAGGTTTCTATTCTAAACCA+TGG - chr1_1:65574426-65574445 None:intergenic 30.0%
GGAAGACAAAAACGAAAAAA+AGG - chr1_1:65574445-65574464 None:intergenic 30.0%
AGATTATTCACACAACAAGA+AGG - chr1_1:65574645-65574664 None:intergenic 30.0%
TCCAGTTGAAAAATGATAAC+TGG + chr1_1:65574699-65574718 Msa0036780:five_prime_UTR 30.0%
CCAGTTGAAAAATGATAACT+GGG + chr1_1:65574700-65574719 Msa0036780:five_prime_UTR 30.0%
AAAAATGATAACTGGGTCAT+TGG + chr1_1:65574707-65574726 Msa0036780:five_prime_UTR 30.0%
GAACTAATCAGCATATAAGT+CGG - chr1_1:65574801-65574820 None:intergenic 30.0%
ATCTCACTCATAGTTTATTG+TGG + chr1_1:65575064-65575083 Msa0036780:intron 30.0%
CTTTGTCTTCAAACTTCATT+TGG + chr1_1:65575106-65575125 Msa0036780:five_prime_UTR 30.0%
AAACTTCATTTGGATTCCAA+AGG + chr1_1:65575116-65575135 Msa0036780:five_prime_UTR 30.0%
ATTGCTTCCAACATATTCTT+CGG - chr1_1:65575156-65575175 None:intergenic 30.0%
AATGCTAATACTAAGAGCTT+TGG + chr1_1:65575173-65575192 Msa0036780:five_prime_UTR 30.0%
!!! AGCTTTGGTTTTTTGATTTG+TGG + chr1_1:65575188-65575207 Msa0036780:five_prime_UTR 30.0%
AAACGGTATAACTCATAAAG+AGG - chr1_1:65575268-65575287 None:intergenic 30.0%
TCTTTATGAGTTATACCGTT+TGG + chr1_1:65575267-65575286 Msa0036780:CDS 30.0%
!! AAGCTTGATAATGAGACTAA+CGG + chr1_1:65575298-65575317 Msa0036780:CDS 30.0%
!! TGGATTTGATTTGAATGTGT+AGG + chr1_1:65575465-65575484 Msa0036780:intron 30.0%
AGCTCAAAAAAATCATTCTC+AGG - chr1_1:65575491-65575510 None:intergenic 30.0%
!!! TGAGAATGATTTTTTTGAGC+TGG + chr1_1:65575490-65575509 Msa0036780:CDS 30.0%
!!! ATGATTTTTTTGAGCTGGTT+TGG + chr1_1:65575495-65575514 Msa0036780:CDS 30.0%
!!! TGATTTTTTTGAGCTGGTTT+GGG + chr1_1:65575496-65575515 Msa0036780:CDS 30.0%
AATCCAAAGATAGGAAAGTT+TGG + chr1_1:65575659-65575678 Msa0036780:CDS 30.0%
ATTGAATGAGATTCCAATGT+CGG + chr1_1:65575697-65575716 Msa0036780:CDS 30.0%
TGATTTCTTTCATGAACTCA+CGG + chr1_1:65575799-65575818 Msa0036780:CDS 30.0%
! GTAATGGGAATCAGATATTT+AGG + chr1_1:65575870-65575889 Msa0036780:CDS 30.0%
! AGAACCGATGAATATTTCTA+AGG + chr1_1:65575913-65575932 Msa0036780:CDS 30.0%
! GAACCGATGAATATTTCTAA+GGG + chr1_1:65575914-65575933 Msa0036780:CDS 30.0%
GAACCCTTAGAAATATTCAT+CGG - chr1_1:65575920-65575939 None:intergenic 30.0%
ATCTGTAACTGTTAGATCTA+GGG + chr1_1:65576027-65576046 Msa0036780:CDS 30.0%
! TGAATTTTTCCCATTTTGCA+AGG + chr1_1:65576203-65576222 Msa0036780:CDS 30.0%
ATCCAAATCGAGATTTGAAA+CGG + chr1_1:65576662-65576681 Msa0036780:CDS 30.0%
! GTGTTTTCTTGGTTTATAGA+GGG - chr1_1:65576777-65576796 None:intergenic 30.0%
! AGTGTTTTCTTGGTTTATAG+AGG - chr1_1:65576778-65576797 None:intergenic 30.0%
ACTTTAATTGAAGGATGTTG+AGG + chr1_1:65576795-65576814 Msa0036780:intron 30.0%
AAGTGCATAATCTATCTGAA+AGG + chr1_1:65576890-65576909 Msa0036780:CDS 30.0%
AGTGCATAATCTATCTGAAA+GGG + chr1_1:65576891-65576910 Msa0036780:CDS 30.0%
AACATGACACAAATAACAGA+TGG - chr1_1:65576926-65576945 None:intergenic 30.0%
TGGAAATAAAATAAGCTCGA+GGG - chr1_1:65576972-65576991 None:intergenic 30.0%
ATGGAAATAAAATAAGCTCG+AGG - chr1_1:65576973-65576992 None:intergenic 30.0%
ATTATGATCATCAGCCAAAA+TGG - chr1_1:65576992-65577011 None:intergenic 30.0%
ACTCATACCTAATTGCAATA+AGG + chr1_1:65577068-65577087 Msa0036780:CDS 30.0%
! AAATGTCAGAAGTTCCATTT+TGG + chr1_1:65577352-65577371 Msa0036780:intron 30.0%
CAGAAATGCCGAAATAAATA+AGG - chr1_1:65577452-65577471 None:intergenic 30.0%
ACTAAAATATTAATGCCGAG+GGG - chr1_1:65577570-65577589 None:intergenic 30.0%
TGAATCATTGGAAATCTAGA+CGG - chr1_1:65577810-65577829 None:intergenic 30.0%
TGGATTTAAACAGTCAACTT+TGG + chr1_1:65578302-65578321 Msa0036780:intron 30.0%
GGGCAATATAAATTTGTGAT+TGG + chr1_1:65578377-65578396 Msa0036780:exon 30.0%
TATTGTGAACATGTATCAGT+AGG + chr1_1:65578404-65578423 Msa0036780:intron 30.0%
TACTTTGACATAAAGCATAG+AGG + chr1_1:65578459-65578478 Msa0036780:intron 30.0%
!! ACTTATTGTTTGAGTTGTAC+CGG + chr1_1:65578503-65578522 Msa0036780:intron 30.0%
! AAAGATGAGAAACGACATTT+TGG - chr1_1:65578595-65578614 None:intergenic 30.0%
AAATATCCTCTTCAGTAATC+TGG - chr1_1:65578629-65578648 None:intergenic 30.0%
!!! TCTGTGCAATTTTCTAGTTT+CGG - chr1_1:65578701-65578720 None:intergenic 30.0%
! CTAGAAAATTGCACAGATTT+TGG + chr1_1:65578704-65578723 Msa0036780:three_prime_UTR 30.0%
CACTATGAAAGATCTGAATA+AGG - chr1_1:65578818-65578837 None:intergenic 30.0%
GATCTTTCATAGTGATTCTT+TGG + chr1_1:65578824-65578843 Msa0036780:three_prime_UTR 30.0%
GATAACTTCTGAGTTGCATT+TGG + chr1_1:65574606-65574625 Msa0036780:five_prime_UTR 35.0%
!! CCCAGTTATCATTTTTCAAC+TGG - chr1_1:65574703-65574722 None:intergenic 35.0%
!! AATACAGTGACACTGATTCT+CGG - chr1_1:65574760-65574779 None:intergenic 35.0%
! AGAATCAGTGTCACTGTATT+CGG + chr1_1:65574760-65574779 Msa0036780:five_prime_UTR 35.0%
GTCACTTACTTTACTTGACA+AGG + chr1_1:65574857-65574876 Msa0036780:five_prime_UTR 35.0%
GATAACACCGAAGAATATGT+TGG + chr1_1:65575146-65575165 Msa0036780:five_prime_UTR 35.0%
!!! GATTTGTGGTTTTTTAGCTG+AGG + chr1_1:65575202-65575221 Msa0036780:five_prime_UTR 35.0%
!!! TGGTTTTTTAGCTGAGGTTT+TGG + chr1_1:65575208-65575227 Msa0036780:five_prime_UTR 35.0%
TGTTAATGAACTTACGACGA+AGG - chr1_1:65575343-65575362 None:intergenic 35.0%
TCACCAAACTTTCCTATCTT+TGG - chr1_1:65575665-65575684 None:intergenic 35.0%
! AAGTTTGGTGATTTAGACTC+TGG + chr1_1:65575674-65575693 Msa0036780:CDS 35.0%
AAGTAGATGAAATGATGCCT+TGG + chr1_1:65575732-65575751 Msa0036780:CDS 35.0%
TCCATTGAATAATCCAACCA+AGG - chr1_1:65575752-65575771 None:intergenic 35.0%
TGGTTGGATTATTCAATGGA+TGG + chr1_1:65575752-65575771 Msa0036780:CDS 35.0%
! TAAAACTATTTGAGGCAGGA+AGG - chr1_1:65575832-65575851 None:intergenic 35.0%
! AGAGTAAAACTATTTGAGGC+AGG - chr1_1:65575836-65575855 None:intergenic 35.0%
!! GTTTGACATTGATTCGATGA+TGG - chr1_1:65576004-65576023 None:intergenic 35.0%
CATCTGTAACTGTTAGATCT+AGG + chr1_1:65576026-65576045 Msa0036780:CDS 35.0%
AGAGCTAATCTTCAGAACAT+AGG + chr1_1:65576241-65576260 Msa0036780:CDS 35.0%
TCAGCAAGATCAGATGTTAT+AGG + chr1_1:65576289-65576308 Msa0036780:CDS 35.0%
! GCATTTGGTTCAAGCAATTT+CGG - chr1_1:65576460-65576479 None:intergenic 35.0%
TGTTTAGTAGCTACAGCATT+TGG - chr1_1:65576475-65576494 None:intergenic 35.0%
ATTGTCACCAAGAACTTGAA+TGG - chr1_1:65576545-65576564 None:intergenic 35.0%
! ATTCAAGTTCTTGGTGACAA+TGG + chr1_1:65576544-65576563 Msa0036780:CDS 35.0%
TTCCGTTTCAAATCTCGATT+TGG - chr1_1:65576667-65576686 None:intergenic 35.0%
TGAATCAGTGGGAGTTAAAA+AGG + chr1_1:65576819-65576838 Msa0036780:CDS 35.0%
GAATCAGTGGGAGTTAAAAA+GGG + chr1_1:65576820-65576839 Msa0036780:CDS 35.0%
CTAAGAAGAGCAAAATCAGA+AGG - chr1_1:65577105-65577124 None:intergenic 35.0%
! TAGAATATTGGTTGCCACTA+TGG + chr1_1:65577181-65577200 Msa0036780:intron 35.0%
AGCTAAGTTTGAATCCATAG+TGG - chr1_1:65577198-65577217 None:intergenic 35.0%
AAGTAAATATCATTCCCCCT+CGG + chr1_1:65577552-65577571 Msa0036780:intron 35.0%
CTAAAATATTAATGCCGAGG+GGG - chr1_1:65577569-65577588 None:intergenic 35.0%
! TTAGGTATGGGTTATGGAAT+GGG + chr1_1:65577762-65577781 Msa0036780:CDS 35.0%
! ATCTGAGGTACTTGAATCAT+TGG - chr1_1:65577822-65577841 None:intergenic 35.0%
ATATGATTTCCTTGCATCTG+AGG - chr1_1:65577837-65577856 None:intergenic 35.0%
!! TTAATTTGTGAGTCCACATC+TGG - chr1_1:65578095-65578114 None:intergenic 35.0%
CAAATTAAGCAAAACACTGC+TGG + chr1_1:65578107-65578126 Msa0036780:CDS 35.0%
ACACTAGTATAACAGAGAAG+CGG - chr1_1:65578266-65578285 None:intergenic 35.0%
GTTGACTGTTTAAATCCAAC+AGG - chr1_1:65578300-65578319 None:intergenic 35.0%
TTCAAACCAGATTACTGAAG+AGG + chr1_1:65578620-65578639 Msa0036780:three_prime_UTR 35.0%
TTTACCTGTCAAAATAGCCA+TGG + chr1_1:65578663-65578682 Msa0036780:three_prime_UTR 35.0%
TTACCTGTCAAAATAGCCAT+GGG + chr1_1:65578664-65578683 Msa0036780:three_prime_UTR 35.0%
!! TTGCACAGATTTTGGTATCT+TGG + chr1_1:65578712-65578731 Msa0036780:three_prime_UTR 35.0%
!! TGCACAGATTTTGGTATCTT+GGG + chr1_1:65578713-65578732 Msa0036780:three_prime_UTR 35.0%
AAGTTTGGGAATGACCCAAA+TGG - chr1_1:65574536-65574555 None:intergenic 40.0%
AGTTTATTGTGGCTTACGAC+AGG + chr1_1:65575075-65575094 Msa0036780:intron 40.0%
CTTCATTTGGATTCCAAAGG+TGG + chr1_1:65575119-65575138 Msa0036780:five_prime_UTR 40.0%
!! GGTGTTATCTTTTCCACCTT+TGG - chr1_1:65575135-65575154 None:intergenic 40.0%
TACCTCTACTTGATTGACCT+TGG - chr1_1:65575541-65575560 None:intergenic 40.0%
GTAGAAAGAGTCCATCTTGT+AGG + chr1_1:65575558-65575577 Msa0036780:CDS 40.0%
TTACCATCTCATAGTCCTAG+AGG + chr1_1:65575599-65575618 Msa0036780:CDS 40.0%
ATTTCATCTACTTCGCGAGA+TGG - chr1_1:65575725-65575744 None:intergenic 40.0%
AGATGAAATGATGCCTTGGT+TGG + chr1_1:65575736-65575755 Msa0036780:CDS 40.0%
GCCTTGGTTGGATTATTCAA+TGG + chr1_1:65575748-65575767 Msa0036780:CDS 40.0%
!! TGACATTGATTCGATGATGG+CGG - chr1_1:65576001-65576020 None:intergenic 40.0%
TAATGTTAGCAGTGGTAACC+AGG + chr1_1:65576072-65576091 Msa0036780:CDS 40.0%
ATGCGAGTAATATCCCCATA+AGG - chr1_1:65576103-65576122 None:intergenic 40.0%
TAAGCTAGAAAAATCGCTCG+AGG - chr1_1:65576134-65576153 None:intergenic 40.0%
AAGCAAGATCCTATAATGCC+TGG + chr1_1:65576163-65576182 Msa0036780:CDS 40.0%
ATTACATTGGAACCATTGCC+AGG - chr1_1:65576184-65576203 None:intergenic 40.0%
TTAACAAGAGCTGAATCAGG+AGG - chr1_1:65576352-65576371 None:intergenic 40.0%
GGATTAACAAGAGCTGAATC+AGG - chr1_1:65576355-65576374 None:intergenic 40.0%
TCAGCTCTTGTTAATCCAAG+CGG + chr1_1:65576358-65576377 Msa0036780:CDS 40.0%
CAAAGGTTTCAAATCAGCCT+TGG - chr1_1:65576434-65576453 None:intergenic 40.0%
ATTCCATTCTCTTTGCAAGC+AGG - chr1_1:65576505-65576524 None:intergenic 40.0%
! CAACCTTCCATTCAAGTTCT+TGG + chr1_1:65576535-65576554 Msa0036780:CDS 40.0%
TCACCAAGAACTTGAATGGA+AGG - chr1_1:65576541-65576560 None:intergenic 40.0%
GATGTTGAGGATGAATCAGT+GGG + chr1_1:65576808-65576827 Msa0036780:CDS 40.0%
TCTATCTGAAAGGGTGAGTA+AGG + chr1_1:65576900-65576919 Msa0036780:intron 40.0%
TCGGCATTTCTGACTTCATA+CGG + chr1_1:65577460-65577479 Msa0036780:intron 40.0%
TTTCTGACTTCATACGGACT+AGG + chr1_1:65577466-65577485 Msa0036780:intron 40.0%
TAAAGCTTCTATGCTGGATG+AGG + chr1_1:65577493-65577512 Msa0036780:CDS 40.0%
TGACATCATCTGCGTAAGAT+AGG - chr1_1:65577631-65577650 None:intergenic 40.0%
TCTTACGCAGATGATGTCAA+TGG + chr1_1:65577632-65577651 Msa0036780:intron 40.0%
CTTACGCAGATGATGTCAAT+GGG + chr1_1:65577633-65577652 Msa0036780:intron 40.0%
ATGCATATGGGGTTAGGTAT+GGG + chr1_1:65577750-65577769 Msa0036780:CDS 40.0%
! GTTAGGTATGGGTTATGGAA+TGG + chr1_1:65577761-65577780 Msa0036780:CDS 40.0%
ATTCAAGTACCTCAGATGCA+AGG + chr1_1:65577825-65577844 Msa0036780:CDS 40.0%
AAACCCTTGAGTATTCGATC+TGG - chr1_1:65577904-65577923 None:intergenic 40.0%
AGATCGAATACTCAAGGGTT+TGG + chr1_1:65577903-65577922 Msa0036780:CDS 40.0%
ACATGTTGAAGCTGTGAATC+CGG + chr1_1:65578040-65578059 Msa0036780:CDS 40.0%
GAAAATTGATCACAGAGACC+TGG - chr1_1:65578180-65578199 None:intergenic 40.0%
! CAGTCAACTTTGGTGCATAA+TGG + chr1_1:65578312-65578331 Msa0036780:intron 40.0%
! TCAACTTTGGTGCATAATGG+TGG + chr1_1:65578315-65578334 Msa0036780:CDS 40.0%
GAGTATCAATCATAACCTGC+CGG - chr1_1:65578525-65578544 None:intergenic 40.0%
! TTGATACTCTGCATTGATCG+TGG + chr1_1:65578536-65578555 Msa0036780:three_prime_UTR 40.0%
!!! ATTCCCATGGCTATTTTGAC+AGG - chr1_1:65578670-65578689 None:intergenic 40.0%
TTCGGAAACTAGAATTCCCA+TGG - chr1_1:65578683-65578702 None:intergenic 40.0%
!! GCACAGATTTTGGTATCTTG+GGG + chr1_1:65578714-65578733 Msa0036780:three_prime_UTR 40.0%
ATGACCCAAATGGACGAAGA+AGG - chr1_1:65574526-65574545 None:intergenic 45.0%
! ATCAGTGTCACTGTATTCGG+AGG + chr1_1:65574763-65574782 Msa0036780:five_prime_UTR 45.0%
CAAGCTTCTCTCTAGCCAAA+CGG - chr1_1:65575285-65575304 None:intergenic 45.0%
AGTGGTCAGATTTCAAGCCA+AGG + chr1_1:65575521-65575540 Msa0036780:CDS 45.0%
AGCCAAGGTCAATCAAGTAG+AGG + chr1_1:65575536-65575555 Msa0036780:CDS 45.0%
GATGGCAAACTCCTACAAGA+TGG - chr1_1:65575572-65575591 None:intergenic 45.0%
TGAGATGGTAAGCAGTGAGA+TGG - chr1_1:65575590-65575609 None:intergenic 45.0%
ACGTCTTTATCTCGACCTCT+AGG - chr1_1:65575617-65575636 None:intergenic 45.0%
AGAGGTCGAGATAAAGACGT+AGG + chr1_1:65575617-65575636 Msa0036780:CDS 45.0%
GGCTCTTTGCAACACGAATA+TGG + chr1_1:65575773-65575792 Msa0036780:CDS 45.0%
TAAGGGTTCTTCAGCTGAAC+AGG + chr1_1:65575931-65575950 Msa0036780:CDS 45.0%
GCAAGACATAAAGCTAGTGC+CGG + chr1_1:65575965-65575984 Msa0036780:CDS 45.0%
!! TGATGGCGGATATAACTGAC+CGG - chr1_1:65575987-65576006 None:intergenic 45.0%
GAAAAATCGCTCGAGGAAGA+TGG - chr1_1:65576127-65576146 None:intergenic 45.0%
GATCCTATAATGCCTGGCAA+TGG + chr1_1:65576169-65576188 Msa0036780:CDS 45.0%
GAACCATTGCCAGGCATTAT+AGG - chr1_1:65576175-65576194 None:intergenic 45.0%
! TTAGCTCTCACAATAGCTGC+AGG - chr1_1:65576229-65576248 None:intergenic 45.0%
CAGAACATAGGCTTGAAGTC+TGG + chr1_1:65576253-65576272 Msa0036780:CDS 45.0%
ACCTTATGACAGCGCATTTC+CGG - chr1_1:65576400-65576419 None:intergenic 45.0%
GGTTTCAAATCAGCCTTGGA+TGG - chr1_1:65576430-65576449 None:intergenic 45.0%
TCAAGCAATTTCGGCTGCAA+AGG - chr1_1:65576451-65576470 None:intergenic 45.0%
AAGCCTGCTTGCAAAGAGAA+TGG + chr1_1:65576499-65576518 Msa0036780:CDS 45.0%
TCTTCTGTTTGCTCTGGCAA+TGG + chr1_1:65576619-65576638 Msa0036780:CDS 45.0%
ACGGAAAAGTAGAGACACTG+AGG + chr1_1:65576681-65576700 Msa0036780:CDS 45.0%
GGATGTTGAGGATGAATCAG+TGG + chr1_1:65576807-65576826 Msa0036780:intron 45.0%
AGTGGGAGTTAAAAAGGGAG+CGG + chr1_1:65576825-65576844 Msa0036780:CDS 45.0%
GATTATGCACTTCAGCAGCA+CGG - chr1_1:65576882-65576901 None:intergenic 45.0%
GCTCGAGGGAAAATATGTGT+GGG - chr1_1:65576958-65576977 None:intergenic 45.0%
AGCTCGAGGGAAAATATGTG+TGG - chr1_1:65576959-65576978 None:intergenic 45.0%
GGTGGATAAAGCTTCTATGC+TGG + chr1_1:65577487-65577506 Msa0036780:intron 45.0%
CCAGCAGGTAACATCATTTG+AGG - chr1_1:65577675-65577694 None:intergenic 45.0%
CCTCAAATGATGTTACCTGC+TGG + chr1_1:65577672-65577691 Msa0036780:CDS 45.0%
! ATGGCCGCATTTTCACAGAT+GGG + chr1_1:65577720-65577739 Msa0036780:CDS 45.0%
GATGCCCATCTGTGAAAATG+CGG - chr1_1:65577727-65577746 None:intergenic 45.0%
! GCATTTTCACAGATGGGCAT+CGG + chr1_1:65577726-65577745 Msa0036780:CDS 45.0%
CATGCATATGGGGTTAGGTA+TGG + chr1_1:65577749-65577768 Msa0036780:CDS 45.0%
! ATGGGGTTAGGTATGGGTTA+TGG + chr1_1:65577756-65577775 Msa0036780:CDS 45.0%
ATGGGAATGCCTGACATGAA+CGG + chr1_1:65577780-65577799 Msa0036780:CDS 45.0%
ATGGCCAGATCGAATACTCA+AGG + chr1_1:65577897-65577916 Msa0036780:CDS 45.0%
TGGCCAGATCGAATACTCAA+GGG + chr1_1:65577898-65577917 Msa0036780:CDS 45.0%
TACTCAAGGGTTTGGACTTC+CGG + chr1_1:65577911-65577930 Msa0036780:CDS 45.0%
CCTCCTGAAAAAGGAAATGC+CGG - chr1_1:65577969-65577988 None:intergenic 45.0%
!!! CGGCATTTCCTTTTTCAGGA+GGG + chr1_1:65577967-65577986 Msa0036780:CDS 45.0%
ATAAGAGGCCCTCCTGAAAA+AGG - chr1_1:65577978-65577997 None:intergenic 45.0%
TCTTATGAACTCATCCGCTC+CGG + chr1_1:65577992-65578011 Msa0036780:CDS 45.0%
AAAAGATCGAAGGCCAGATG+TGG + chr1_1:65578079-65578098 Msa0036780:CDS 45.0%
GGGATAAACAGACCTGGTTA+GGG - chr1_1:65578154-65578173 None:intergenic 45.0%
AGGGATAAACAGACCTGGTT+AGG - chr1_1:65578155-65578174 None:intergenic 45.0%
TGGTTAGGGATAAACAGACC+TGG - chr1_1:65578160-65578179 None:intergenic 45.0%
AGGTCTGTTTATCCCTAACC+AGG + chr1_1:65578159-65578178 Msa0036780:intron 45.0%
TGATCACAGAGACCTGGTTA+GGG - chr1_1:65578174-65578193 None:intergenic 45.0%
TTGATCACAGAGACCTGGTT+AGG - chr1_1:65578175-65578194 None:intergenic 45.0%
GTGTGTGTGAACTAACCTGT+TGG + chr1_1:65578282-65578301 Msa0036780:intron 45.0%
TGACAGTGAAGCTGCTAATC+CGG + chr1_1:65578356-65578375 Msa0036780:CDS 45.0%
!! ATTGTTTGAGTTGTACCGGC+AGG + chr1_1:65578507-65578526 Msa0036780:intron 45.0%
TCGTGGCTAGTAGAAGAATC+AGG + chr1_1:65578553-65578572 Msa0036780:three_prime_UTR 45.0%
AGTGACACACGCACACAACT+GGG - chr1_1:65574466-65574485 None:intergenic 50.0%
ACCCAAATGGACGAAGAAGG+CGG - chr1_1:65574523-65574542 None:intergenic 50.0%
CTGATTCTCGGCTGAGATCA+AGG - chr1_1:65574748-65574767 None:intergenic 50.0%
!! TTTGAGCTGGTTTGGGAGAG+TGG + chr1_1:65575503-65575522 Msa0036780:CDS 50.0%
!! CGACCTCTAGGACTATGAGA+TGG - chr1_1:65575605-65575624 None:intergenic 50.0%
GGTCGAGATAAAGACGTAGG+AGG + chr1_1:65575620-65575639 Msa0036780:CDS 50.0%
CGAGATAAAGACGTAGGAGG+AGG + chr1_1:65575623-65575642 Msa0036780:CDS 50.0%
GTAACCAGGACGTGCCTTAT+GGG + chr1_1:65576086-65576105 Msa0036780:CDS 50.0%
TAACCAGGACGTGCCTTATG+GGG + chr1_1:65576087-65576106 Msa0036780:CDS 50.0%
AGCTGCAGGCCTTGCAAAAT+GGG - chr1_1:65576215-65576234 None:intergenic 50.0%
TAGCTGCAGGCCTTGCAAAA+TGG - chr1_1:65576216-65576235 None:intergenic 50.0%
TCCAAGCGGTGAGTGTTCAA+AGG + chr1_1:65576372-65576391 Msa0036780:CDS 50.0%
TCCTTTGAACACTCACCGCT+TGG - chr1_1:65576376-65576395 None:intergenic 50.0%
CGGTGAGTGTTCAAAGGAAC+CGG + chr1_1:65576378-65576397 Msa0036780:CDS 50.0%
ACCGGAAATGCGCTGTCATA+AGG + chr1_1:65576396-65576415 Msa0036780:CDS 50.0%
GGAAATGCGCTGTCATAAGG+TGG + chr1_1:65576399-65576418 Msa0036780:CDS 50.0%
TAAGGTGGTAGAGCCATCCA+AGG + chr1_1:65576414-65576433 Msa0036780:CDS 50.0%
! CTTGGTGACAATGGCGCTAA+AGG + chr1_1:65576553-65576572 Msa0036780:CDS 50.0%
GGACACACAGCTGCTGAAAA+AGG + chr1_1:65576574-65576593 Msa0036780:CDS 50.0%
CACAGCTGCTGAAAAAGGCA+TGG + chr1_1:65576579-65576598 Msa0036780:CDS 50.0%
! AGCTGCTGAAAAAGGCATGG+AGG + chr1_1:65576582-65576601 Msa0036780:CDS 50.0%
! TGCTGAAAAAGGCATGGAGG+TGG + chr1_1:65576585-65576604 Msa0036780:CDS 50.0%
GCCTCTTCTTCTGTTTGCTC+TGG + chr1_1:65576613-65576632 Msa0036780:CDS 50.0%
GCCAGAGCAAACAGAAGAAG+AGG - chr1_1:65576617-65576636 None:intergenic 50.0%
! TTCAGCAGCACGGCTTCTTT+TGG - chr1_1:65576872-65576891 None:intergenic 50.0%
GTATACAGAGGCGAAGAGAC+AGG + chr1_1:65577016-65577035 Msa0036780:intron 50.0%
!! CTGACTTCATACGGACTAGG+TGG + chr1_1:65577469-65577488 Msa0036780:intron 50.0%
CAGATGATGTCAATGGGAGC+TGG + chr1_1:65577639-65577658 Msa0036780:intron 50.0%
TGTGAAAATGCGGCCATGTG+TGG - chr1_1:65577717-65577736 None:intergenic 50.0%
! CATGGCCGCATTTTCACAGA+TGG + chr1_1:65577719-65577738 Msa0036780:CDS 50.0%
!! ATGGGCATCGGCATGCATAT+GGG + chr1_1:65577738-65577757 Msa0036780:CDS 50.0%
ATCGGCATGCATATGGGGTT+AGG + chr1_1:65577744-65577763 Msa0036780:CDS 50.0%
ACCCTCTGCTATGCATGGAA+TGG + chr1_1:65577878-65577897 Msa0036780:CDS 50.0%
GCCATTCCATGCATAGCAGA+GGG - chr1_1:65577882-65577901 None:intergenic 50.0%
ACTCAAGGGTTTGGACTTCC+GGG + chr1_1:65577912-65577931 Msa0036780:CDS 50.0%
AAAGGAAATGCCGGAGCATG+CGG - chr1_1:65577960-65577979 None:intergenic 50.0%
! GCTCCGGCATTTCCTTTTTC+AGG + chr1_1:65577963-65577982 Msa0036780:CDS 50.0%
!!! CCGGCATTTCCTTTTTCAGG+AGG + chr1_1:65577966-65577985 Msa0036780:CDS 50.0%
GGAGCGGATGAGTTCATAAG+AGG - chr1_1:65577993-65578012 None:intergenic 50.0%
CTTATGAACTCATCCGCTCC+GGG + chr1_1:65577993-65578012 Msa0036780:CDS 50.0%
CCTGTGGATCCATACACAGA+CGG - chr1_1:65578020-65578039 None:intergenic 50.0%
CACAGCTTCAACATGTCCTG+TGG - chr1_1:65578036-65578055 None:intergenic 50.0%
CGTGTGGCTCAAAAGATCGA+AGG + chr1_1:65578069-65578088 Msa0036780:CDS 50.0%
TACAAGCCAGATCCCTAACC+AGG + chr1_1:65578139-65578158 Msa0036780:CDS 50.0%
AACAGACCTGGTTAGGGATC+TGG - chr1_1:65578148-65578167 None:intergenic 50.0%
TAATGGTGGCCATGCTTCAG+TGG + chr1_1:65578329-65578348 Msa0036780:CDS 50.0%
TGTCATCAGCCACTGAAGCA+TGG - chr1_1:65578341-65578360 None:intergenic 50.0%
GACAGTGAAGCTGCTAATCC+GGG + chr1_1:65578357-65578376 Msa0036780:CDS 50.0%
CAGTGACACACGCACACAAC+TGG - chr1_1:65574467-65574486 None:intergenic 55.0%
! GTGTGCGTGTGTCACTGCAT+TGG + chr1_1:65574470-65574489 Msa0036780:five_prime_UTR 55.0%
GCCGCCTTCTTCGTCCATTT+GGG + chr1_1:65574519-65574538 Msa0036780:five_prime_UTR 55.0%
GACTAACGGCGCAAGTGTAG+CGG + chr1_1:65575312-65575331 Msa0036780:CDS 55.0%
GGTAACCAGGACGTGCCTTA+TGG + chr1_1:65576085-65576104 Msa0036780:CDS 55.0%
TATCCCCATAAGGCACGTCC+TGG - chr1_1:65576093-65576112 None:intergenic 55.0%
TCTGGCAATGGTGCAGACAG+AGG + chr1_1:65576631-65576650 Msa0036780:CDS 55.0%
CAATGGTGCAGACAGAGGCT+CGG + chr1_1:65576636-65576655 Msa0036780:CDS 55.0%
GGAGTTAAAAAGGGAGCGGC+TGG + chr1_1:65576829-65576848 Msa0036780:CDS 55.0%
TGCATGTGCTGCATTCCAGC+AGG - chr1_1:65577690-65577709 None:intergenic 55.0%
GCACATGCATGCACCACACA+TGG + chr1_1:65577701-65577720 Msa0036780:CDS 55.0%
!! GATGGGCATCGGCATGCATA+TGG + chr1_1:65577737-65577756 Msa0036780:CDS 55.0%
!! TGGGCATCGGCATGCATATG+GGG + chr1_1:65577739-65577758 Msa0036780:CDS 55.0%
GGAATGCCTGACATGAACGG+CGG + chr1_1:65577783-65577802 Msa0036780:CDS 55.0%
GAATGCCTGACATGAACGGC+GGG + chr1_1:65577784-65577803 Msa0036780:CDS 55.0%
GGCCATTCCATGCATAGCAG+AGG - chr1_1:65577883-65577902 None:intergenic 55.0%
GGCATGGAAATTCCCTGTCC+CGG - chr1_1:65577933-65577952 None:intergenic 55.0%
GATCCATACACAGACGGACC+CGG - chr1_1:65578014-65578033 None:intergenic 55.0%
CCGTCTGTGTATGGATCCAC+AGG + chr1_1:65578017-65578036 Msa0036780:CDS 55.0%
TTTGAGCCACACGCTGAAGC+CGG - chr1_1:65578062-65578081 None:intergenic 55.0%
CGCCGCCTTCTTCGTCCATT+TGG + chr1_1:65574518-65574537 Msa0036780:five_prime_UTR 60.0%
!! TCGCGAGATGGCACCGACAT+TGG - chr1_1:65575713-65575732 None:intergenic 60.0%
AAAAAGGGAGCGGCTGGACG+AGG + chr1_1:65576835-65576854 Msa0036780:CDS 60.0%
ATGCCCGTTGCGCATATGCC+TGG + chr1_1:65577855-65577874 Msa0036780:CDS 60.0%
GGTCCAGGCATATGCGCAAC+GGG - chr1_1:65577861-65577880 None:intergenic 60.0%
GGGTCCAGGCATATGCGCAA+CGG - chr1_1:65577862-65577881 None:intergenic 60.0%
CCATGCATAGCAGAGGGTCC+AGG - chr1_1:65577876-65577895 None:intergenic 60.0%
CCTGGACCCTCTGCTATGCA+TGG + chr1_1:65577873-65577892 Msa0036780:CDS 60.0%
AGGGTTTGGACTTCCGGGAC+AGG + chr1_1:65577917-65577936 Msa0036780:CDS 60.0%
GGGTTTGGACTTCCGGGACA+GGG + chr1_1:65577918-65577937 Msa0036780:CDS 60.0%
CATGCCAATGCCGCATGCTC+CGG + chr1_1:65577947-65577966 Msa0036780:CDS 60.0%
AATGCCGGAGCATGCGGCAT+TGG - chr1_1:65577954-65577973 None:intergenic 60.0%
ATACACAGACGGACCCGGAG+CGG - chr1_1:65578009-65578028 None:intergenic 60.0%
GTGAATCCGGCTTCAGCGTG+TGG + chr1_1:65578053-65578072 Msa0036780:CDS 60.0%
!! CGGAGCATGCGGCATTGGCA+TGG - chr1_1:65577949-65577968 None:intergenic 65.0%
GCTCCGGGTCCGTCTGTGTA+TGG + chr1_1:65578008-65578027 Msa0036780:CDS 65.0%
GCGGCTGGACGAGGAGTTGC+AGG + chr1_1:65576844-65576863 Msa0036780:CDS 70.0%
GACGGCCCGCCGTTCATGTC+AGG - chr1_1:65577792-65577811 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65574394 65578872 65574394 ID=Msa0036780;Name=Msa0036780
chr1_1 mRNA 65574394 65578872 65574394 ID=Msa0036780-mRNA-1;Parent=Msa0036780;Name=Msa0036780-mRNA-1;_AED=0.10;_eAED=0.10;_QI=670|1|1|1|0.75|0.55|9|347|719
chr1_1 exon 65574394 65574878 65574394 ID=Msa0036780-mRNA-1:exon:21078;Parent=Msa0036780-mRNA-1
chr1_1 exon 65575077 65575347 65575077 ID=Msa0036780-mRNA-1:exon:21079;Parent=Msa0036780-mRNA-1
chr1_1 exon 65575487 65576723 65575487 ID=Msa0036780-mRNA-1:exon:21080;Parent=Msa0036780-mRNA-1
chr1_1 exon 65576808 65576912 65576808 ID=Msa0036780-mRNA-1:exon:21081;Parent=Msa0036780-mRNA-1
chr1_1 exon 65577024 65577089 65577024 ID=Msa0036780-mRNA-1:exon:21082;Parent=Msa0036780-mRNA-1
chr1_1 exon 65577488 65577553 65577488 ID=Msa0036780-mRNA-1:exon:21083;Parent=Msa0036780-mRNA-1
chr1_1 exon 65577642 65578160 65577642 ID=Msa0036780-mRNA-1:exon:21084;Parent=Msa0036780-mRNA-1
chr1_1 exon 65578315 65578398 65578315 ID=Msa0036780-mRNA-1:exon:21085;Parent=Msa0036780-mRNA-1
chr1_1 exon 65578529 65578872 65578529 ID=Msa0036780-mRNA-1:exon:21086;Parent=Msa0036780-mRNA-1
chr1_1 five_prime_UTR 65574394 65574878 65574394 ID=Msa0036780-mRNA-1:five_prime_utr;Parent=Msa0036780-mRNA-1
chr1_1 five_prime_UTR 65575077 65575261 65575077 ID=Msa0036780-mRNA-1:five_prime_utr;Parent=Msa0036780-mRNA-1
chr1_1 CDS 65575262 65575347 65575262 ID=Msa0036780-mRNA-1:cds;Parent=Msa0036780-mRNA-1
chr1_1 CDS 65575487 65576723 65575487 ID=Msa0036780-mRNA-1:cds;Parent=Msa0036780-mRNA-1
chr1_1 CDS 65576808 65576912 65576808 ID=Msa0036780-mRNA-1:cds;Parent=Msa0036780-mRNA-1
chr1_1 CDS 65577024 65577089 65577024 ID=Msa0036780-mRNA-1:cds;Parent=Msa0036780-mRNA-1
chr1_1 CDS 65577488 65577553 65577488 ID=Msa0036780-mRNA-1:cds;Parent=Msa0036780-mRNA-1
chr1_1 CDS 65577642 65578160 65577642 ID=Msa0036780-mRNA-1:cds;Parent=Msa0036780-mRNA-1
chr1_1 CDS 65578315 65578395 65578315 ID=Msa0036780-mRNA-1:cds;Parent=Msa0036780-mRNA-1
chr1_1 three_prime_UTR 65578396 65578398 65578396 ID=Msa0036780-mRNA-1:three_prime_utr;Parent=Msa0036780-mRNA-1
chr1_1 three_prime_UTR 65578529 65578872 65578529 ID=Msa0036780-mRNA-1:three_prime_utr;Parent=Msa0036780-mRNA-1
Gene Sequence

>Msa0036780

ATGCCTCTTTATGAGTTATACCGTTTGGCTAGAGAGAAGCTTGATAATGAGACTAACGGCGCAAGTGTAGCGGATCAACCTTCGTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTGCCATCTCACTGCTTACCATCTCATAGTCCTAGAGGTCGAGATAAAGACGTAGGAGGAGGATTTAGTAATAACAATCCAAAGATAGGAAAGTTTGGTGATTTAGACTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGCGAAGTAGATGAAATGATGCCTTGGTTGGATTATTCAATGGATGGCTCTTTGCAACACGAATATGGTTCTGATTTCTTTCATGAACTCACGGAGAACGACCTTCCTGCCTCAAATAGTTTTACTCTATTGGATAAAAAAAGTAATGGGAATCAGATATTTAGGGACTCTCATAAAAATTCTGCAGAACCGATGAATATTTCTAAGGGTTCTTCAGCTGAACAGGTTGTTGAGACTGCAAGACATAAAGCTAGTGCCGGTCAGTTATATCCGCCATCATCGAATCAATGTCAAACAACATCTGTAACTGTTAGATCTAGGGCATCAGATATAACCGAAAATAATAATGTTAGCAGTGGTAACCAGGACGTGCCTTATGGGGATATTACTCGCATTCCATCTTCCTCGAGCGATTTTTCTAGCTTAAAAGCGCAGAAGCAAGATCCTATAATGCCTGGCAATGGTTCCAATGTAATGAATTTTTCCCATTTTGCAAGGCCTGCAGCTATTGTGAGAGCTAATCTTCAGAACATAGGCTTGAAGTCTGGTTTGAATTCAGCTTCAGCAAGATCAGATGTTATAGGAGTTAAGAATAAAGGCGCTGCTTCGACTAGCAGCAATCCTCCTGATTCAGCTCTTGTTAATCCAAGCGGTGAGTGTTCAAAGGAACCGGAAATGCGCTGTCATAAGGTGGTAGAGCCATCCAAGGCTGATTTGAAACCTTTGCAGCCGAAATTGCTTGAACCAAATGCTGTAGCTACTAAACAATCGAAGCCTGCTTGCAAAGAGAATGGAATTAAGAATGATCAACCTTCCATTCAAGTTCTTGGTGACAATGGCGCTAAAGGACACACAGCTGCTGAAAAAGGCATGGAGGTGGCAGTAGCCTCTTCTTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGCTCGGATGATCCAAATCGAGATTTGAAACGGAAAAGTAGAGACACTGAGGACTCTGAATGCCATAGTGAAGATGTTGAGGATGAATCAGTGGGAGTTAAAAAGGGAGCGGCTGGACGAGGAGTTGCAGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTGCAAGAACTCATACCTAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCTCAAATGATGTTACCTGCTGGAATGCAGCACATGCATGCACCACACATGGCCGCATTTTCACAGATGGGCATCGGCATGCATATGGGGTTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGCGGGCCGTCTAGATTTCCAATGATTCAAGTACCTCAGATGCAAGGAAATCATATGCCCGTTGCGCATATGCCTGGACCCTCTGCTATGCATGGAATGGCCAGATCGAATACTCAAGGGTTTGGACTTCCGGGACAGGGAATTTCCATGCCAATGCCGCATGCTCCGGCATTTCCTTTTTCAGGAGGGCCTCTTATGAACTCATCCGCTCCGGGTCCGTCTGTGTATGGATCCACAGGACATGTTGAAGCTGTGAATCCGGCTTCAGCGTGTGGCTCAAAAGATCGAAGGCCAGATGTGGACTCACAAATTAAGCAAAACACTGCTGGTCGTGACTCTACAAGCCAGATCCCTAACCAGTCAACTTTGGTGCATAATGGTGGCCATGCTTCAGTGGCTGATGACAGTGAAGCTGCTAATCCGGGCAATATAAATTTGTGA
Protein sequence

>Msa0036780

MPLYELYRLAREKLDNETNGASVADQPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSLPSHCLPSHSPRGRDKDVGGGFSNNNPKIGKFGDLDSGLNEIPMSVPSREVDEMMPWLDYSMDGSLQHEYGSDFFHELTENDLPASNSFTLLDKKSNGNQIFRDSHKNSAEPMNISKGSSAEQVVETARHKASAGQLYPPSSNQCQTTSVTVRSRASDITENNNVSSGNQDVPYGDITRIPSSSSDFSSLKAQKQDPIMPGNGSNVMNFSHFARPAAIVRANLQNIGLKSGLNSASARSDVIGVKNKGAASTSSNPPDSALVNPSGECSKEPEMRCHKVVEPSKADLKPLQPKLLEPNAVATKQSKPACKENGIKNDQPSIQVLGDNGAKGHTAAEKGMEVAVASSSVCSGNGADRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGAAGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPAGMQHMHAPHMAAFSQMGIGMHMGLGMGYGMGMPDMNGGPSRFPMIQVPQMQGNHMPVAHMPGPSAMHGMARSNTQGFGLPGQGISMPMPHAPAFPFSGGPLMNSSAPGPSVYGSTGHVEAVNPASACGSKDRRPDVDSQIKQNTAGRDSTSQIPNQSTLVHNGGHASVADDSEAANPGNINL*