AlfalfaGEDB | Msa0038190

M. sativa cultivar zhongmu-4 / Msa0038190

KEGG: K11423
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009791 GO:0009987 GO:0010224 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564
PFAM: PF17907.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038190	sp\|Q84WW6\|ASHH1_ARATH	64.375	480	155	6	6	470	11	489	0.0	612

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0038190	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038190	MtrunA17_Chr1g0201621	97.912	479	9	1	1	478	1	479	0.0	967
Msa0038190	MtrunA17_Chr1g0201311	96.660	479	15	1	1	478	1	479	0.0	956
Msa0038190	MtrunA17_Chr3g0125251	41.453	234	134	3	12	244	1253	1484	1.64e-55	200
Msa0038190	MtrunA17_Chr6g0477001	43.519	216	118	4	11	226	42	253	2.62e-48	169
Msa0038190	MtrunA17_Chr1g0201321	97.590	83	1	1	271	352	1	83	5.65e-48	160
Msa0038190	MtrunA17_Chr2g0305371	34.677	248	145	5	1	248	266	496	7.43e-41	153
Msa0038190	MtrunA17_Chr5g0403241	35.503	169	94	2	66	219	1334	1502	4.15e-23	103
Msa0038190	MtrunA17_Chr2g0297191	40.323	124	73	1	96	219	1044	1166	4.46e-23	103
Msa0038190	MtrunA17_Chr4g0075321	34.706	170	92	3	67	219	892	1059	4.64e-23	103
Msa0038190	MtrunA17_Chr8g0354821	32.836	201	97	6	61	224	489	688	6.93e-21	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0038190	AT1G76710.2	64.375	480	155	6	6	470	11	489	0.0	612
Msa0038190	AT1G76710.1	64.375	480	155	6	6	470	11	489	0.0	612
Msa0038190	AT1G76710.4	63.190	489	155	7	6	470	11	498	0.0	603
Msa0038190	AT1G76710.3	60.947	507	155	7	6	470	11	516	0.0	597
Msa0038190	AT1G77300.1	42.060	233	127	4	15	244	958	1185	2.40e-56	202
Msa0038190	AT1G77300.2	42.060	233	127	4	15	244	958	1185	2.59e-56	202
Msa0038190	AT4G30860.1	37.387	222	128	4	7	228	259	469	1.39e-40	152
Msa0038190	AT3G59960.3	43.503	177	78	4	67	226	81	252	2.26e-34	130
Msa0038190	AT3G59960.2	43.503	177	78	4	67	226	81	252	2.26e-34	130
Msa0038190	AT3G59960.4	43.503	177	78	4	67	226	81	252	2.26e-34	130

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Find 146 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAAGGCCGAGGGTG+GGG	0.484563	1_1:-67480749	Msa0038190:CDS
AAAATAACAGACAAAGATTT+TGG	0.185708	1_1:+67477765	None:intergenic
AAAATAACAGACACAGATTT+TGG	0.174376	1_1:+67477883	None:intergenic
AAACTTGCAGAAGCGAGAAA+AGG	0.479870	1_1:+67483843	Msa0038200:CDS
AAAGTTGGCAATAAGAGGAA+TGG	0.497255	1_1:+67483807	Msa0038200:CDS
AAATAGAAAGCGAGGACATG+AGG	0.607787	1_1:-67478929	Msa0038190:CDS
AACATTTGAGCGCACCACAG+AGG	0.676482	1_1:+67480058	None:intergenic
AACTTGCAGAAGCGAGAAAA+GGG	0.426125	1_1:+67483844	Msa0038200:CDS
AAGAAAATGGAATGTCATGG+GGG	0.698806	1_1:-67480181	Msa0038190:CDS
AAGAGTTGGAATATTTGCAC+TGG	0.522066	1_1:-67480154	Msa0038190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACCATATGAGAACAAAAGT+TGG	+	chr1_1:67478034-67478053	None:intergenic	30.0%
TCACATAAAGTCGAATATGA+AGG	+	chr1_1:67478090-67478109	None:intergenic	30.0%
TGCTATCTTCTACTTATGAT+TGG	-	chr1_1:67478276-67478295	Msa0038190:intron	30.0%
GTATTCAATTAGGCTTACTT+TGG	-	chr1_1:67478464-67478483	Msa0038190:intron	30.0%
AATTGATTGATCGATGTTAC+CGG	+	chr1_1:67478767-67478786	None:intergenic	30.0%
TATATCCATTGAAGGAAGAT+TGG	+	chr1_1:67478964-67478983	None:intergenic	30.0%
AATGAAAATATCCACTAGCT+GGG	+	chr1_1:67479133-67479152	None:intergenic	30.0%
AAATGAAAATATCCACTAGC+TGG	+	chr1_1:67479134-67479153	None:intergenic	30.0%
ACATTAAAGATGAAAGAGAG+AGG	+	chr1_1:67479399-67479418	None:intergenic	30.0%
AGTAAAAACCATCATTCTCA+TGG	-	chr1_1:67479493-67479512	Msa0038190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	67477734	67484111	67477734	ID=Msa0038190;Name=Msa0038190
chr1_1	mRNA	67477734	67484111	67477734	ID=Msa0038190-mRNA-1;Parent=Msa0038190;Name=Msa0038190-mRNA-1;_AED=0.16;_eAED=0.16;_QI=314\|1\|1\|1\|1\|1\|10\|261\|478
chr1_1	exon	67477734	67478282	67477734	ID=Msa0038190-mRNA-1:exon:21959;Parent=Msa0038190-mRNA-1
chr1_1	exon	67478722	67479142	67478722	ID=Msa0038190-mRNA-1:exon:21958;Parent=Msa0038190-mRNA-1
chr1_1	exon	67479531	67479565	67479531	ID=Msa0038190-mRNA-1:exon:21957;Parent=Msa0038190-mRNA-1
chr1_1	exon	67480023	67480221	67480023	ID=Msa0038190-mRNA-1:exon:21956;Parent=Msa0038190-mRNA-1
chr1_1	exon	67480360	67480453	67480360	ID=Msa0038190-mRNA-1:exon:21955;Parent=Msa0038190-mRNA-1
chr1_1	exon	67480536	67480620	67480536	ID=Msa0038190-mRNA-1:exon:21954;Parent=Msa0038190-mRNA-1
chr1_1	exon	67480724	67480810	67480724	ID=Msa0038190-mRNA-1:exon:21953;Parent=Msa0038190-mRNA-1
chr1_1	exon	67481439	67481595	67481439	ID=Msa0038190-mRNA-1:exon:21952;Parent=Msa0038190-mRNA-1
chr1_1	exon	67483625	67483692	67483625	ID=Msa0038190-mRNA-1:exon:21951;Parent=Msa0038190-mRNA-1
chr1_1	exon	67483795	67484111	67483795	ID=Msa0038190-mRNA-1:exon:21950;Parent=Msa0038190-mRNA-1
chr1_1	five_prime_UTR	67483798	67484111	67483798	ID=Msa0038190-mRNA-1:five_prime_utr;Parent=Msa0038190-mRNA-1
chr1_1	CDS	67483795	67483797	67483795	ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1	CDS	67483625	67483692	67483625	ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1	CDS	67481439	67481595	67481439	ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1	CDS	67480724	67480810	67480724	ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1	CDS	67480536	67480620	67480536	ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1	CDS	67480360	67480453	67480360	ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1	CDS	67480023	67480221	67480023	ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1	CDS	67479531	67479565	67479531	ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1	CDS	67478722	67479142	67478722	ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1	CDS	67477995	67478282	67477995	ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1	three_prime_UTR	67477734	67477994	67477734	ID=Msa0038190-mRNA-1:three_prime_utr;Parent=Msa0038190-mRNA-1

Gene Sequence

>Msa0038190

ATGGAACCTCATGCTGCTGAAGATTTGCCTCAATACATTCATATCAATCAAAATGATTTTTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAGGTATGATGAAGATGATCCCGACAGTGCCTGTGGAGATGGGTGTCTAAATGTATTGACCAGCACTGAATGCACCCCTGGATTTTGCCCTTGTGGCATCCTTTGTAAAAATCAGAAATTTCAGAAATGTGAATATGCAAAAACCAAGTTATTTAAAACTGAAGGCCGAGGGTGGGGTCTTTTGGCTGATGAGGAAATTAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGCAAAGAAGCCAAGCGCAGATCCCATACTTATGAAACTCAAGGTCTTAAGGATGCATTTATCATTTCTCTTAATGCGTCTGAATCTATCGATGCAACTAGAAAAGGAAGCCTTGCAAGATTTATAAACCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCATGGGGGAAATAAGAGTTGGAATATTTGCACTGGAAGATATTCCTATTGGAACTGAACTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCTCAAATGTTCTGAATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACTCACGTCAAATGTTGGTGGACAGAGTGAACAATCCATGGCTATTATACTGAAAGCTGAAGAACCATCGGAGTCCACTGTTTTAAATATTCAACCACTGAATTCAATTGGGATCAATGGCTTAGGTATTCAGAAAATGAAAACTGAAATAGAAAGCGAGGACATGAGGTTGTACTCCCAAGATACCAAACAGGATCTTCCCCAAAAAAATGCGATATCGCGCATTCGAAGTAACACTGCAGGAGGAAAGTCCATCTCTACCAAAAGATCAAAGGGGGGAAAGCTTAAAAATCGCATACAGAAGAAAATTGATGCAAAGTATGCAGCTGGCCTTTTAGCATCAAAGGAAGCACAGGAGGAGATTTTAGATTATGAGAAAAGAAAAGATGACGCTACGGAAGCCCTTGATTCTTTATACAATGAAATACGGCCTGCCATTGAAGAACACGAGAAGGATACCCAAGACAGTGTATCTACGACAGTAGCAGAGAAGTGGATACAGGCTTCCTGCCTAAAACTCAAGGCGGAGTTTGATCTTTACTCGTCAATTATTAAAAATGTTGCTTGTACTCCTCAAAGGGCACCCGGCCAAGCAAAAGGTACTGAAGTCGATAACGAAGACAAAATGAAGCTTTTGACGTTCTCGCCCTCATCTAATCCGTAA

Protein sequence

>Msa0038190

MEPHAAEDLPQYIHINQNDFFMRRHKKQKEEDIAICECRYDEDDPDSACGDGCLNVLTSTECTPGFCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKAGQFVIEYCGEVISCKEAKRRSHTYETQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVMGEIRVGIFALEDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSEFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTSNVGGQSEQSMAIILKAEEPSESTVLNIQPLNSIGINGLGIQKMKTEIESEDMRLYSQDTKQDLPQKNAISRIRSNTAGGKSISTKRSKGGKLKNRIQKKIDAKYAAGLLASKEAQEEILDYEKRKDDATEALDSLYNEIRPAIEEHEKDTQDSVSTTVAEKWIQASCLKLKAEFDLYSSIIKNVACTPQRAPGQAKGTEVDNEDKMKLLTFSPSSNP*