AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038190 MtrunA17_Chr1g0201621 97.912 479 9 1 1 478 1 479 0.0 967
Msa0038190 MtrunA17_Chr1g0201311 96.660 479 15 1 1 478 1 479 0.0 956
Msa0038190 MtrunA17_Chr3g0125251 41.453 234 134 3 12 244 1253 1484 1.64e-55 200
Msa0038190 MtrunA17_Chr6g0477001 43.519 216 118 4 11 226 42 253 2.62e-48 169
Msa0038190 MtrunA17_Chr1g0201321 97.590 83 1 1 271 352 1 83 5.65e-48 160
Msa0038190 MtrunA17_Chr2g0305371 34.677 248 145 5 1 248 266 496 7.43e-41 153
Msa0038190 MtrunA17_Chr5g0403241 35.503 169 94 2 66 219 1334 1502 4.15e-23 103
Msa0038190 MtrunA17_Chr2g0297191 40.323 124 73 1 96 219 1044 1166 4.46e-23 103
Msa0038190 MtrunA17_Chr4g0075321 34.706 170 92 3 67 219 892 1059 4.64e-23 103
Msa0038190 MtrunA17_Chr8g0354821 32.836 201 97 6 61 224 489 688 6.93e-21 95.9
Msa0038190 MtrunA17_Chr5g0401921 36.095 169 92 3 42 203 672 831 9.09e-21 95.9
Msa0038190 MtrunA17_Chr7g0235081 39.844 128 70 1 85 205 195 322 1.05e-20 93.2
Msa0038190 MtrunA17_Chr3g0126701 36.242 149 91 3 78 223 915 1062 5.48e-20 93.6
Msa0038190 MtrunA17_Chr8g0347071 36.424 151 92 3 76 223 799 948 5.78e-20 93.6
Msa0038190 MtrunA17_Chr5g0399801 34.343 198 92 8 61 223 894 1088 9.29e-20 92.8
Msa0038190 MtrunA17_Chr8g0373821 34.337 166 95 3 67 219 369 533 9.91e-20 92.0
Msa0038190 MtrunA17_Chr7g0275611 38.158 152 88 4 76 223 814 963 1.10e-19 92.8
Msa0038190 MtrunA17_Chr7g0221611 36.943 157 89 3 90 245 911 1058 1.64e-19 92.0
Msa0038190 MtrunA17_Chr7g0255181 32.065 184 103 5 61 223 522 704 2.09e-19 91.7
Msa0038190 MtrunA17_Chr1g0147121 35.762 151 93 3 76 223 884 1033 2.86e-19 91.3
Msa0038190 MtrunA17_Chr4g0003511 31.658 199 90 7 61 220 857 1048 1.03e-18 89.7
Msa0038190 MtrunA17_Chr1g0194631 36.923 130 80 1 73 202 599 726 1.36e-18 89.0
Msa0038190 MtrunA17_Chr1g0170651 37.107 159 77 7 75 220 394 542 2.51e-18 87.8
Msa0038190 MtrunA17_Chr1g0149581 35.461 141 86 2 88 223 1525 1665 2.74e-18 88.6
Msa0038190 MtrunA17_Chr1g0149611 35.461 141 86 2 88 223 367 507 3.20e-18 87.4
Msa0038190 MtrunA17_Chr4g0003501 31.606 193 96 7 61 220 762 951 1.85e-17 85.5
Msa0038190 MtrunA17_Chr3g0080761 32.487 197 94 7 61 219 464 659 8.55e-17 83.2
Msa0038190 MtrunA17_Chr6g0460921 32.450 151 86 4 67 201 247 397 6.39e-15 76.6
Msa0038190 MtrunA17_Chr7g0270001 36.697 109 67 1 95 203 159 265 6.67e-14 72.4
Msa0038190 MtrunA17_Chr7g0232981 28.788 198 100 8 37 203 301 488 9.69e-14 73.6
Msa0038190 MtrunA17_Chr1g0183321 29.050 179 95 6 67 219 569 741 3.80e-13 72.0
Msa0038190 MtrunA17_Chr7g0252211 30.198 202 101 7 61 223 556 756 4.68e-13 71.6
Msa0038190 MtrunA17_Chr6g0476121 30.198 202 101 7 61 223 442 642 1.17e-11 67.0
Msa0038190 MtrunA17_Chr7g0262001 28.324 173 104 5 67 219 525 697 7.54e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038190 AT1G76710.2 64.375 480 155 6 6 470 11 489 0.0 612
Msa0038190 AT1G76710.1 64.375 480 155 6 6 470 11 489 0.0 612
Msa0038190 AT1G76710.4 63.190 489 155 7 6 470 11 498 0.0 603
Msa0038190 AT1G76710.3 60.947 507 155 7 6 470 11 516 0.0 597
Msa0038190 AT1G77300.1 42.060 233 127 4 15 244 958 1185 2.40e-56 202
Msa0038190 AT1G77300.2 42.060 233 127 4 15 244 958 1185 2.59e-56 202
Msa0038190 AT4G30860.1 37.387 222 128 4 7 228 259 469 1.39e-40 152
Msa0038190 AT3G59960.3 43.503 177 78 4 67 226 81 252 2.26e-34 130
Msa0038190 AT3G59960.2 43.503 177 78 4 67 226 81 252 2.26e-34 130
Msa0038190 AT3G59960.4 43.503 177 78 4 67 226 81 252 2.26e-34 130
Msa0038190 AT2G44150.1 35.808 229 118 4 12 226 44 257 7.74e-34 131
Msa0038190 AT3G59960.1 42.775 173 85 2 67 226 81 252 1.20e-33 130
Msa0038190 AT5G42400.7 42.742 124 70 1 96 219 1261 1383 4.05e-25 110
Msa0038190 AT5G42400.2 42.742 124 70 1 96 219 1261 1383 4.05e-25 110
Msa0038190 AT5G42400.8 42.742 124 70 1 96 219 1261 1383 4.05e-25 110
Msa0038190 AT5G42400.5 42.742 124 70 1 96 219 1261 1383 4.05e-25 110
Msa0038190 AT5G42400.4 42.742 124 70 1 96 219 1261 1383 4.05e-25 110
Msa0038190 AT5G42400.1 42.742 124 70 1 96 219 1261 1383 4.05e-25 110
Msa0038190 AT5G42400.3 42.742 124 70 1 96 219 1261 1383 4.05e-25 110
Msa0038190 AT5G42400.6 42.742 124 70 1 96 219 1261 1383 4.05e-25 110
Msa0038190 AT1G05830.2 36.257 171 96 5 68 234 900 1061 1.06e-20 96.3
Msa0038190 AT1G05830.4 36.257 171 96 5 68 234 900 1061 1.06e-20 96.3
Msa0038190 AT1G05830.1 36.257 171 96 5 68 234 900 1061 1.06e-20 96.3
Msa0038190 AT1G05830.3 36.257 171 96 5 68 234 900 1061 1.06e-20 96.3
Msa0038190 AT2G35160.2 36.872 179 87 8 61 223 625 793 1.42e-20 95.5
Msa0038190 AT2G35160.3 36.872 179 87 8 61 223 625 793 1.42e-20 95.5
Msa0038190 AT2G35160.1 36.872 179 87 8 61 223 625 793 1.42e-20 95.5
Msa0038190 AT2G35160.4 36.872 179 87 8 61 223 625 793 1.42e-20 95.5
Msa0038190 AT2G35160.5 36.872 179 87 8 61 223 589 757 1.46e-20 95.5
Msa0038190 AT3G03750.2 36.667 180 94 6 59 219 167 345 2.63e-20 92.4
Msa0038190 AT4G27910.1 36.424 151 92 3 76 223 877 1026 3.22e-20 94.7
Msa0038190 AT1G02580.1 33.728 169 95 3 48 211 518 674 6.88e-20 93.2
Msa0038190 AT2G23740.3 37.255 153 75 4 66 200 1206 1355 8.48e-20 93.6
Msa0038190 AT2G23740.6 37.255 153 75 4 66 200 1206 1355 8.48e-20 93.6
Msa0038190 AT2G23740.2 37.255 153 75 4 66 200 1206 1355 8.48e-20 93.6
Msa0038190 AT2G23740.1 37.255 153 75 4 66 200 1199 1348 8.78e-20 93.6
Msa0038190 AT2G23380.1 38.168 131 79 1 73 203 741 869 1.35e-19 92.8
Msa0038190 AT2G23380.2 38.168 131 79 1 73 203 514 642 2.18e-19 91.7
Msa0038190 AT3G61740.2 37.255 153 89 4 76 223 831 981 2.51e-19 92.0
Msa0038190 AT3G61740.1 37.255 153 89 4 76 223 867 1017 2.60e-19 92.0
Msa0038190 AT2G31650.1 35.673 171 97 5 68 234 879 1040 7.25e-19 90.5
Msa0038190 AT4G02020.1 36.154 130 81 1 73 202 696 823 5.15e-18 87.8
Msa0038190 AT5G53430.1 35.099 151 94 3 76 223 893 1042 5.49e-18 87.8
Msa0038190 AT5G04940.2 30.653 199 101 7 61 224 474 670 3.89e-17 84.7
Msa0038190 AT5G04940.1 30.653 199 101 7 61 224 474 670 3.89e-17 84.7
Msa0038190 AT2G22740.2 32.512 203 96 8 58 223 591 789 2.83e-16 82.4
Msa0038190 AT2G22740.1 32.512 203 96 8 58 223 591 789 2.83e-16 82.4
Msa0038190 AT1G17770.1 32.105 190 93 8 65 219 500 688 3.18e-16 82.0
Msa0038190 AT2G24740.1 28.796 191 100 6 69 224 566 755 1.21e-14 77.0
Msa0038190 AT2G23740.4 39.286 112 51 3 66 163 1206 1314 3.78e-14 75.9
Msa0038190 AT2G23740.5 39.286 112 51 3 66 163 1206 1314 3.78e-14 75.9
Msa0038190 AT3G04380.1 28.261 184 94 7 67 221 285 459 3.47e-12 68.9
Msa0038190 AT3G04380.4 28.261 184 94 7 67 221 285 459 3.83e-12 68.6
Msa0038190 AT3G04380.6 28.261 184 94 7 67 221 258 432 3.88e-12 68.6
Msa0038190 AT3G04380.3 28.261 184 94 7 67 221 269 443 4.09e-12 68.6
Msa0038190 AT3G04380.2 28.261 184 94 7 67 221 258 432 4.16e-12 68.6
Msa0038190 AT3G04380.5 28.261 184 94 7 67 221 242 416 5.24e-12 68.2

Find 146 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAATTTGTTGGTGAAAA+AGG 0.121521 1_1:-67484008 Msa0038190:five_prime_UTR
AAAATAACAGACACAGATTT+TGG 0.174376 1_1:+67477883 None:intergenic
AAAATAACAGACAAAGATTT+TGG 0.185708 1_1:+67477765 None:intergenic
AGGCCGAGGGTGGGGTCTTT+TGG 0.223348 1_1:-67480741 Msa0038190:CDS
GACCTTGAGTTTCATAAGTA+TGG 0.226901 1_1:+67480533 None:intergenic
CTATGTTCTGTTATGAATTT+CGG 0.234287 1_1:+67477804 None:intergenic
TTTGGCTGATGAGGAAATTA+AGG 0.256975 1_1:-67480723 Msa0038190:intron
GTGCTTCCTTTGATGCTAAA+AGG 0.263819 1_1:+67478745 None:intergenic
GAAGATCCTGTTTGGTATCT+TGG 0.294712 1_1:+67478898 None:intergenic
CAAGATTTATAAACCATTCC+TGG 0.303845 1_1:-67480359 Msa0038190:intron
CAATAAGAGGAATGGGAAAA+TGG 0.327420 1_1:+67483815 Msa0038200:CDS
AGAAGCGAGAAAAGGGGTTT+GGG 0.332370 1_1:+67483851 Msa0038200:CDS
ATTCAACCACTGAATTCAAT+TGG 0.332627 1_1:-67478987 Msa0038190:CDS
GCACTGGAAGATATTCCTAT+TGG 0.334570 1_1:-67480138 Msa0038190:CDS
CAAACTGTGAGACAAGAAAA+TGG 0.346413 1_1:-67480194 Msa0038190:CDS
AGCAGGAGGATACTTATCTA+TGG 0.346424 1_1:-67479548 Msa0038190:intron
ATGATCGAAGAAATTTGAAT+AGG 0.356481 1_1:+67483902 None:intergenic
AAGATCCTGTTTGGTATCTT+GGG 0.359715 1_1:+67478899 None:intergenic
CAGAAGCGAGAAAAGGGGTT+TGG 0.375404 1_1:+67483850 Msa0038200:CDS
GCTTGGCCGGGTGCCCTTTG+AGG 0.389466 1_1:+67478065 None:intergenic
ATCCTTCTCGTGTTCTTCAA+TGG 0.405165 1_1:+67478202 None:intergenic
CTGAATTCAATTGGGATCAA+TGG 0.406898 1_1:-67478978 Msa0038190:CDS
GGATTTGTTTATCAGGTCCT+AGG 0.410964 1_1:+67477904 None:intergenic
TGATCGAAGAAATTTGAATA+GGG 0.412142 1_1:+67483903 None:intergenic
GAAGCGAGAAAAGGGGTTTG+GGG 0.412473 1_1:+67483852 Msa0038200:CDS
ATTCTTTATACAATGAAATA+CGG 0.412721 1_1:-67478229 Msa0038190:CDS
TCCTCCGCAGAGTCATATAA+AGG 0.419793 1_1:+67479101 None:intergenic
CCCGACAGTGCCTGTGGAGA+TGG 0.424956 1_1:-67481512 Msa0038190:CDS
AACTTGCAGAAGCGAGAAAA+GGG 0.426125 1_1:+67483844 Msa0038200:CDS
AAGCGAGAAAAGGGGTTTGG+GGG 0.426634 1_1:+67483853 Msa0038200:CDS
ATTCTGTGAATCATCAATTA+CGG 0.429873 1_1:+67477978 None:intergenic
CTCAAATGTTCTGAATTCCT+TGG 0.432418 1_1:-67480045 Msa0038190:CDS
ATGCCACAAGGGCAAAATCC+AGG 0.434511 1_1:+67481455 None:intergenic
TTTCATTGTATAAAGAATCA+AGG 0.435719 1_1:+67478234 None:intergenic
TTCTCGTGTTCTTCAATGGC+AGG 0.436989 1_1:+67478206 None:intergenic
TGTTGGACCCGTGCGGAGCA+CGG 0.437892 1_1:-67484051 Msa0038190:five_prime_UTR
ATCTCTACCAAAAGATCAAA+GGG 0.444160 1_1:-67478822 Msa0038190:CDS
AGTCATACAGTAAAATTTGT+TGG 0.446105 1_1:-67484017 Msa0038190:five_prime_UTR
GTTGGACCCGTGCGGAGCAC+GGG 0.452302 1_1:-67484050 Msa0038190:five_prime_UTR
CTTCTTGCGTTGCGTTGCGT+TGG 0.461571 1_1:+67483953 None:intergenic
TATTCCTATTGGAACTGAAC+TGG 0.465129 1_1:-67480127 Msa0038190:CDS
ATAAGTATGGGATCTGCGCT+TGG 0.465834 1_1:+67480546 None:intergenic
AGTAGCAGAGAAGTGGATAC+AGG 0.474675 1_1:-67478156 Msa0038190:CDS
TTGAAGAGGTTTACCAGGAA+TGG 0.476963 1_1:+67480346 None:intergenic
AAACTTGCAGAAGCGAGAAA+AGG 0.479870 1_1:+67483843 Msa0038200:CDS
ACCAGCACTGAATGCACCCC+TGG 0.480052 1_1:-67481473 Msa0038190:CDS
TATGCCAGTTCAGTTCCAAT+AGG 0.481653 1_1:+67480123 None:intergenic
TCAATTGGGATCAATGGCTT+AGG 0.484206 1_1:-67478972 Msa0038190:CDS
AAAACTGAAGGCCGAGGGTG+GGG 0.484563 1_1:-67480749 Msa0038190:CDS
GAACAAAAGTTGGCAATAAG+AGG 0.484609 1_1:+67483802 Msa0038200:CDS
ACCTTGAGTTTCATAAGTAT+GGG 0.487157 1_1:+67480534 None:intergenic
GCGAGAAAAGGGGTTTGGGG+GGG 0.487175 1_1:+67483855 Msa0038200:CDS
AGAGTTAGTGCTGGTGCACT+AGG 0.488323 1_1:+67477845 None:intergenic
TTCAACCACTGAATTCAATT+GGG 0.488608 1_1:-67478986 Msa0038190:CDS
AGCTTTCAGTATAATAGCCA+TGG 0.489595 1_1:+67479040 None:intergenic
TCTATCGATGCAACTAGAAA+AGG 0.490560 1_1:-67480390 Msa0038190:CDS
AGGGCACCCGGCCAAGCAAA+AGG 0.495569 1_1:-67478059 Msa0038190:CDS
AAAGTTGGCAATAAGAGGAA+TGG 0.497255 1_1:+67483807 Msa0038200:CDS
AAGTTGGCAATAAGAGGAAT+GGG 0.502123 1_1:+67483808 Msa0038200:CDS
TGTCGTAGATACACTGTCTT+GGG 0.502526 1_1:+67478178 None:intergenic
CCATCTCCACAGGCACTGTC+GGG 0.506283 1_1:+67481512 None:intergenic
CGAAATTCATAACAGAACAT+AGG 0.511125 1_1:-67477803 Msa0038190:three_prime_UTR
CTAGGTTCTGTTATGAACTT+CGG 0.514327 1_1:+67477922 None:intergenic
TACCATATGAGAACAAAAGT+TGG 0.516571 1_1:+67483792 Msa0038200:CDS
CCCATCTCCACAGGCACTGT+CGG 0.518933 1_1:+67481511 None:intergenic
AGCGAGAAAAGGGGTTTGGG+GGG 0.519042 1_1:+67483854 Msa0038200:CDS
ACCAAGTTATTTAAAACTGA+AGG 0.520954 1_1:-67480761 Msa0038190:CDS
AAGAGTTGGAATATTTGCAC+TGG 0.522066 1_1:-67480154 Msa0038190:CDS
CCGACAGTGCCTGTGGAGAT+GGG 0.523601 1_1:-67481511 Msa0038190:CDS
ACTGCAAGTGCTGGTGCACT+AGG 0.524915 1_1:+67477728 None:intergenic
TTCATTGTATAAAGAATCAA+GGG 0.526900 1_1:+67478235 None:intergenic
TCCAGGGGTGCATTCAGTGC+TGG 0.526955 1_1:+67481472 None:intergenic
TGTTGCTTGTACTCCTCAAA+GGG 0.529187 1_1:-67478078 Msa0038190:CDS
ATGTTGCTTGTACTCCTCAA+AGG 0.530019 1_1:-67478079 Msa0038190:CDS
TGCCACAAGGGCAAAATCCA+GGG 0.530653 1_1:+67481456 None:intergenic
AATGGTTTATAAATCTTGCA+AGG 0.536559 1_1:+67480364 None:intergenic
CAGCCAAAAGACCCCACCCT+CGG 0.537785 1_1:+67480738 None:intergenic
CATCTCTACCAAAAGATCAA+AGG 0.539479 1_1:-67478823 Msa0038190:CDS
CGCATTCGAAGTAACACTGC+AGG 0.543043 1_1:-67478855 Msa0038190:CDS
CTGTCGTAGATACACTGTCT+TGG 0.543309 1_1:+67478177 None:intergenic
ACAAGAAAATGGAATGTCAT+GGG 0.544715 1_1:-67480183 Msa0038190:CDS
ATTGATGCAAAGTATGCAGC+TGG 0.547593 1_1:-67478768 Msa0038190:CDS
TTTAGCATCAAAGGAAGCAC+AGG 0.547737 1_1:-67478742 Msa0038190:CDS
TGATTGATATGAATGTATTG+AGG 0.557044 1_1:+67483646 Msa0038200:intron
AGTTGACAAACTGCAAGTGC+TGG 0.560076 1_1:+67477719 None:intergenic
TGAATGGTTTGGAGGTGCAA+AGG 0.560782 1_1:-67480088 Msa0038190:CDS
GCAGGAGGATACTTATCTAT+GGG 0.561610 1_1:-67479547 Msa0038190:intron
TAAAACTGAAGGCCGAGGGT+GGG 0.562493 1_1:-67480750 Msa0038190:CDS
CACCGACCCGTGCTCCGCAC+GGG 0.566381 1_1:+67484044 None:intergenic
CTACGACAGTAGCAGAGAAG+TGG 0.567208 1_1:-67478163 Msa0038190:CDS
AGCATCAAAGGAAGCACAGG+AGG 0.568189 1_1:-67478739 Msa0038190:CDS
GACAAGAAAATGGAATGTCA+TGG 0.568296 1_1:-67480184 Msa0038190:CDS
TTGATCCCAATTGAATTCAG+TGG 0.569284 1_1:+67478981 None:intergenic
ACACCGACCCGTGCTCCGCA+CGG 0.570476 1_1:+67484043 None:intergenic
GCATAAGAAGCAGAAGGAGG+AGG 0.570658 1_1:-67481573 Msa0038190:CDS
GTACTCCCAAGATACCAAAC+AGG 0.572352 1_1:-67478904 Msa0038190:CDS
ATATTGCTATATGTGAATGC+AGG 0.572676 1_1:-67481550 Msa0038190:CDS
TTGATGATTCACAGAATACA+TGG 0.573245 1_1:-67477972 Msa0038190:three_prime_UTR
AATGTTCTCAGAGTTAGTGC+TGG 0.582248 1_1:+67477836 None:intergenic
ATCAATTACGGATTAGATGA+GGG 0.583144 1_1:+67477990 None:intergenic
CATCAATTACGGATTAGATG+AGG 0.583480 1_1:+67477989 None:intergenic
CGAAGTTCATAACAGAACCT+AGG 0.583850 1_1:-67477921 Msa0038190:three_prime_UTR
TATGGGAAGATGATGATGAC+AGG 0.584972 1_1:-67479530 Msa0038190:intron
TTCCTTGGAGCAAAATCTCG+TGG 0.586918 1_1:-67480030 Msa0038190:CDS
GACCCGTGCGGAGCACGGGT+CGG 0.589271 1_1:-67484046 Msa0038190:five_prime_UTR
TTATTTAAAACTGAAGGCCG+AGG 0.589346 1_1:-67480755 Msa0038190:CDS
TTTAAAACAGTGGACTCCGA+TGG 0.593496 1_1:+67479011 None:intergenic
GATGAACTCACGTCAAATGT+TGG 0.593891 1_1:-67479080 Msa0038190:CDS
GGCTTCCTGCCTAAAACTCA+AGG 0.598288 1_1:-67478135 Msa0038190:CDS
TGCCATTGAAGAACACGAGA+AGG 0.599044 1_1:-67478204 Msa0038190:CDS
ACTGAAAGCTGAAGAACCAT+CGG 0.600098 1_1:-67479027 Msa0038190:CDS
GTGCAGGCATAAGAAGCAGA+AGG 0.601872 1_1:-67481579 Msa0038190:intron
TGGACAGAGTGAACAATCCA+TGG 0.605363 1_1:-67479057 Msa0038190:CDS
TTAAAACTGAAGGCCGAGGG+TGG 0.605393 1_1:-67480751 Msa0038190:CDS
GTGCACTAGGTAGCATAACA+TGG 0.607288 1_1:+67477741 None:intergenic
TGTACTCCTCAAAGGGCACC+CGG 0.607570 1_1:-67478071 Msa0038190:CDS
AAATAGAAAGCGAGGACATG+AGG 0.607787 1_1:-67478929 Msa0038190:CDS
GAAAAGAAAAGATGACGCTA+CGG 0.608952 1_1:-67478261 Msa0038190:CDS
CTCTACCAAAAGATCAAAGG+GGG 0.611270 1_1:-67478820 Msa0038190:CDS
GAAAACTGAAATAGAAAGCG+AGG 0.615849 1_1:-67478937 Msa0038190:CDS
TGCACTAGGTAGCATTAACA+TGG 0.616150 1_1:+67477859 None:intergenic
TCCTTTATATGACTCTGCGG+AGG 0.618388 1_1:-67479102 Msa0038190:CDS
TATTTAAAACTGAAGGCCGA+GGG 0.619845 1_1:-67480754 Msa0038190:CDS
CGTTGGTACTGTAGTGGTAG+CGG 0.621056 1_1:+67483970 None:intergenic
TCCCATACTTATGAAACTCA+AGG 0.623281 1_1:-67480535 Msa0038190:intron
GCAAAGGTTCGCTGCCTCTG+TGG 0.623435 1_1:-67480072 Msa0038190:CDS
ATTTAGACACCCATCTCCAC+AGG 0.625505 1_1:+67481502 None:intergenic
GGCAAATCTTCAGCAGCATG+AGG 0.632645 1_1:+67483667 Msa0038200:intron
GCTCCGCACGGGTCCAACAG+CGG 0.635789 1_1:+67484055 None:intergenic
CAGTTTGTCATTGAATACTG+TGG 0.640591 1_1:-67480592 Msa0038190:CDS
CAAGAAAATGGAATGTCATG+GGG 0.642373 1_1:-67480182 Msa0038190:CDS
GAACTCACGTCAAATGTTGG+TGG 0.647867 1_1:-67479077 Msa0038190:CDS
CAGGCATAAGAAGCAGAAGG+AGG 0.647886 1_1:-67481576 Msa0038190:CDS
TGGTTGAATATTTAAAACAG+TGG 0.648383 1_1:+67479001 None:intergenic
ATTCGAAGTAACACTGCAGG+AGG 0.651046 1_1:-67478852 Msa0038190:CDS
GATGATCCCGACAGTGCCTG+TGG 0.661300 1_1:-67481518 Msa0038190:CDS
ACTTGCAGAAGCGAGAAAAG+GGG 0.664010 1_1:+67483845 Msa0038200:CDS
GCGTTGCGTTGGTACTGTAG+TGG 0.671813 1_1:+67483964 None:intergenic
ATTCCGCTGTTGGACCCGTG+CGG 0.674220 1_1:-67484058 Msa0038190:five_prime_UTR
AACATTTGAGCGCACCACAG+AGG 0.676482 1_1:+67480058 None:intergenic
GCCACAAGGGCAAAATCCAG+GGG 0.678890 1_1:+67481457 None:intergenic
AAGAAAATGGAATGTCATGG+GGG 0.698806 1_1:-67480181 Msa0038190:CDS
AATTCCTTTATATGACTCTG+CGG 0.704826 1_1:-67479105 Msa0038190:CDS
TCTACCAAAAGATCAAAGGG+GGG 0.707770 1_1:-67478819 Msa0038190:CDS
TCTCTACCAAAAGATCAAAG+GGG 0.724844 1_1:-67478821 Msa0038190:CDS
TTCCTGCCTAAAACTCAAGG+CGG 0.738527 1_1:-67478132 Msa0038190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTCTTTTGATATATTA+CGG - chr1_1:67481996-67482015 Msa0038190:intron 10.0%
!! ATTATTAAAATAATCATCTT+TGG + chr1_1:67483244-67483263 Msa0038200:intron 10.0%
!! AAACAAAATTGTAATAAAGA+GGG + chr1_1:67478067-67478086 None:intergenic 15.0%
!!! CATTTTCTTATCATTTATTT+AGG - chr1_1:67478238-67478257 Msa0038190:CDS 15.0%
!! TTGTTAAAAATATTATCACT+CGG - chr1_1:67478322-67478341 Msa0038190:intron 15.0%
!!! TCAGTTTTATAAAGAAAAAA+AGG + chr1_1:67478599-67478618 None:intergenic 15.0%
!!! AAAAAATGCTCAAAATATTT+TGG + chr1_1:67479275-67479294 None:intergenic 15.0%
!! AAAGAAAAATAACCATATTA+AGG + chr1_1:67481151-67481170 None:intergenic 15.0%
!! AATCCTAATATTAAATGAAA+TGG - chr1_1:67481505-67481524 Msa0038190:CDS 15.0%
!!! TCTTTTTCATTGATTATTAT+TGG - chr1_1:67482209-67482228 Msa0038190:intron 15.0%
!! ATTCTTTATACAATGAAATA+CGG - chr1_1:67483594-67483613 Msa0038190:intron 15.0%
!!! TAAAATTTGTTGGTGAAAAA+GGG - chr1_1:67477816-67477835 Msa0038190:three_prime_UTR 20.0%
!! GAAACAAAATTGTAATAAAG+AGG + chr1_1:67478068-67478087 None:intergenic 20.0%
!!! AAAATGATTTTTTTATGCGA+AGG - chr1_1:67478199-67478218 Msa0038190:CDS 20.0%
!! ATTACTGTTATGAGTTATTT+AGG - chr1_1:67478401-67478420 Msa0038190:intron 20.0%
!!! TTATGAGTTATTTAGGTTAT+AGG - chr1_1:67478408-67478427 Msa0038190:intron 20.0%
!! AATATTGAAAATTATTGGAC+CGG + chr1_1:67478521-67478540 None:intergenic 20.0%
!! AATTCAATATGGAAAAGTTT+CGG + chr1_1:67479105-67479124 None:intergenic 20.0%
!! TTTATAATCAGAAAAAGAGA+GGG + chr1_1:67479202-67479221 None:intergenic 20.0%
!!! TTTTATAATCAGAAAAAGAG+AGG + chr1_1:67479203-67479222 None:intergenic 20.0%
!! TTTAGTAGAACTAAAACAAA+GGG + chr1_1:67479563-67479582 None:intergenic 20.0%
!! ATTTAGTAGAACTAAAACAA+AGG + chr1_1:67479564-67479583 None:intergenic 20.0%
!! CAGAACATTATATTGTATAT+AGG - chr1_1:67479905-67479924 Msa0038190:intron 20.0%
!!! AAAAAGTATGCAATGAAAAT+AGG + chr1_1:67480677-67480696 None:intergenic 20.0%
!! AAATTAAGGTAATCATATAC+TGG - chr1_1:67481114-67481133 Msa0038190:intron 20.0%
!! AATTAAGGTAATCATATACT+GGG - chr1_1:67481115-67481134 Msa0038190:intron 20.0%
!! TTTGTTTGTTTATTTCATAC+AGG - chr1_1:67481203-67481222 Msa0038190:intron 20.0%
!! TTCAGTGTTAATAAATAATG+AGG - chr1_1:67482049-67482068 Msa0038190:intron 20.0%
!!! TTATGTAAGTTTTGATATAG+TGG - chr1_1:67482094-67482113 Msa0038190:intron 20.0%
!! AATAATCAATGAAAAAGAGA+AGG + chr1_1:67482207-67482226 None:intergenic 20.0%
!! GTTCTTACAAATTATAACAA+GGG + chr1_1:67483299-67483318 Msa0038200:intron 20.0%
!! TGTTCTTACAAATTATAACA+AGG + chr1_1:67483300-67483319 Msa0038200:intron 20.0%
!! TTCATTGTATAAAGAATCAA+GGG + chr1_1:67483591-67483610 Msa0038200:intron 20.0%
!! TTTCATTGTATAAAGAATCA+AGG + chr1_1:67483592-67483611 Msa0038200:intron 20.0%
!!! AAAATAACAGACAAAGATTT+TGG + chr1_1:67484061-67484080 None:intergenic 20.0%
!! ACAAATTTTACTGTATGACT+AGG + chr1_1:67477806-67477825 None:intergenic 25.0%
! AGTCATACAGTAAAATTTGT+TGG - chr1_1:67477806-67477825 Msa0038190:three_prime_UTR 25.0%
!!! GTAAAATTTGTTGGTGAAAA+AGG - chr1_1:67477815-67477834 Msa0038190:three_prime_UTR 25.0%
! TGATCGAAGAAATTTGAATA+GGG + chr1_1:67477923-67477942 None:intergenic 25.0%
! ATGATCGAAGAAATTTGAAT+AGG + chr1_1:67477924-67477943 None:intergenic 25.0%
! TGATTGATATGAATGTATTG+AGG + chr1_1:67478180-67478199 None:intergenic 25.0%
! TAACTGGTTATGTTAATTAC+TGG - chr1_1:67478354-67478373 Msa0038190:intron 25.0%
!! GAACTTTTCTGTATTCAATT+AGG - chr1_1:67478454-67478473 Msa0038190:intron 25.0%
! CAGCGAATATTGAAAATTAT+TGG + chr1_1:67478526-67478545 None:intergenic 25.0%
!! ATAATTTTCAATATTCGCTG+AGG - chr1_1:67478526-67478545 Msa0038190:intron 25.0%
!! GAAGACAAATCAATTTTTGT+TGG - chr1_1:67478617-67478636 Msa0038190:intron 25.0%
!! ACAAATCAATTTTTGTTGGT+GGG - chr1_1:67478621-67478640 Msa0038190:intron 25.0%
! AACATCGATCAATCAATTAA+CGG - chr1_1:67478769-67478788 Msa0038190:CDS 25.0%
! TTGAAGAATATATCCATTGA+AGG + chr1_1:67478972-67478991 None:intergenic 25.0%
! ATATTCTTCAATGTAACTTC+CGG - chr1_1:67478981-67479000 Msa0038190:CDS 25.0%
! AAAAAAATTGATATATCCGC+CGG + chr1_1:67479078-67479097 None:intergenic 25.0%
! ATTCAATATGGAAAAGTTTC+GGG + chr1_1:67479104-67479123 None:intergenic 25.0%
! AGCTAGTGAACAAATAATAA+AGG + chr1_1:67479226-67479245 None:intergenic 25.0%
! AGGATATAATACAATTCGAT+TGG + chr1_1:67480033-67480052 None:intergenic 25.0%
! TCCTATTTAAATCCAAACAA+TGG - chr1_1:67480049-67480068 Msa0038190:CDS 25.0%
! TCCATTGTTTGGATTTAAAT+AGG + chr1_1:67480053-67480072 None:intergenic 25.0%
!!! TGCATATTTTTTTTTTCGAG+TGG - chr1_1:67480553-67480572 Msa0038190:CDS 25.0%
!! ATCTGAAGTAAAGTTTAAGT+AGG + chr1_1:67480711-67480730 None:intergenic 25.0%
! GAAAACGAGAATATTTCTTT+AGG + chr1_1:67480962-67480981 None:intergenic 25.0%
!! ACCAAGTTATTTAAAACTGA+AGG - chr1_1:67481062-67481081 Msa0038190:intron 25.0%
! ATTAAGGTAATCATATACTG+GGG - chr1_1:67481116-67481135 Msa0038190:intron 25.0%
! CAAATAAATAAATGAGCGTA+TGG + chr1_1:67481187-67481206 None:intergenic 25.0%
! AATGGTTTATAAATCTTGCA+AGG + chr1_1:67481462-67481481 None:intergenic 25.0%
!!! ATTAGGATTTTTGTTTGAAG+AGG + chr1_1:67481494-67481513 None:intergenic 25.0%
! GGTCCATTTCATTTAATATT+AGG + chr1_1:67481511-67481530 None:intergenic 25.0%
!!! TCAAGCGTTTTAACATTTAT+AGG + chr1_1:67481853-67481872 None:intergenic 25.0%
! AAAAAACTAAGCACAAAAGT+GGG + chr1_1:67482483-67482502 None:intergenic 25.0%
! AAATACTTTGAATTGCTTTC+AGG + chr1_1:67482527-67482546 None:intergenic 25.0%
!!! TTATATGGTTTTGGATAAAG+AGG + chr1_1:67482567-67482586 None:intergenic 25.0%
! TTGATATTGCAGAAGTTATA+TGG + chr1_1:67482582-67482601 None:intergenic 25.0%
!!! ATATCCTGGTTTTAAAGTTT+TGG - chr1_1:67482661-67482680 Msa0038190:intron 25.0%
!!! TAAACCAAAACTTTAAAACC+AGG + chr1_1:67482668-67482687 None:intergenic 25.0%
!! TGGTTGAATATTTAAAACAG+TGG + chr1_1:67482825-67482844 None:intergenic 25.0%
! AGATGATGATATTCAGTAAT+TGG + chr1_1:67483159-67483178 Msa0038200:intron 25.0%
! AACTACAAAGTTAAAATACC+AGG + chr1_1:67483221-67483240 Msa0038200:intron 25.0%
!! GCCAAAATAATTGAATTTTC+AGG - chr1_1:67483394-67483413 Msa0038190:intron 25.0%
!! GCCTGAAAATTCAATTATTT+TGG + chr1_1:67483398-67483417 Msa0038200:intron 25.0%
!! TGATTGTCATTTATATTCTC+TGG - chr1_1:67483504-67483523 Msa0038190:intron 25.0%
! ATTCTGTGAATCATCAATTA+CGG + chr1_1:67483848-67483867 Msa0038200:CDS 25.0%
!!! AGATTTTGGATTTGTTTATC+AGG + chr1_1:67483929-67483948 None:intergenic 25.0%
!! AAAATAACAGACACAGATTT+TGG + chr1_1:67483943-67483962 None:intergenic 25.0%
! CTATGTTCTGTTATGAATTT+CGG + chr1_1:67484022-67484041 None:intergenic 25.0%
!!! AGATTTTGGATTTGTTTATC+AGG + chr1_1:67483929-67483948 None:intergenic 25.0%
!!! TAGAATTTTAATTCCGCTGT+TGG - chr1_1:67477755-67477774 Msa0038190:three_prime_UTR 30.0%
TACCATATGAGAACAAAAGT+TGG + chr1_1:67478034-67478053 None:intergenic 30.0%
TCACATAAAGTCGAATATGA+AGG + chr1_1:67478090-67478109 None:intergenic 30.0%
TGCTATCTTCTACTTATGAT+TGG - chr1_1:67478276-67478295 Msa0038190:intron 30.0%
GTATTCAATTAGGCTTACTT+TGG - chr1_1:67478464-67478483 Msa0038190:intron 30.0%
!! TTGGATTAGTTTCTCTCTTA+TGG - chr1_1:67478483-67478502 Msa0038190:intron 30.0%
! ATTAGTTTCTCTCTTATGGT+AGG - chr1_1:67478487-67478506 Msa0038190:intron 30.0%
! GACAAATCAATTTTTGTTGG+TGG - chr1_1:67478620-67478639 Msa0038190:intron 30.0%
AATTGATTGATCGATGTTAC+CGG + chr1_1:67478767-67478786 None:intergenic 30.0%
TATATCCATTGAAGGAAGAT+TGG + chr1_1:67478964-67478983 None:intergenic 30.0%
!!! TATTTTGACCTATGTCATAC+TGG - chr1_1:67479026-67479045 Msa0038190:CDS 30.0%
!! ATTTTGACCTATGTCATACT+GGG - chr1_1:67479027-67479046 Msa0038190:CDS 30.0%
AATGAAAATATCCACTAGCT+GGG + chr1_1:67479133-67479152 None:intergenic 30.0%
AAATGAAAATATCCACTAGC+TGG + chr1_1:67479134-67479153 None:intergenic 30.0%
! AGTGCTTGTATTTGTTAGAT+AGG - chr1_1:67479326-67479345 Msa0038190:intron 30.0%
ACATTAAAGATGAAAGAGAG+AGG + chr1_1:67479399-67479418 None:intergenic 30.0%
AGTAAAAACCATCATTCTCA+TGG - chr1_1:67479493-67479512 Msa0038190:intron 30.0%
GTAAAAACCATCATTCTCAT+GGG - chr1_1:67479494-67479513 Msa0038190:intron 30.0%
! TCTAGAGAGTTTACTCTTTT+AGG + chr1_1:67479668-67479687 None:intergenic 30.0%
! TAGTGCGATATTTGATTTCA+GGG + chr1_1:67479762-67479781 None:intergenic 30.0%
ATATTGCTATATGTGAATGC+AGG - chr1_1:67480273-67480292 Msa0038190:intron 30.0%
! AACTCACCTGATTTTTACAA+AGG + chr1_1:67480394-67480413 None:intergenic 30.0%
CTTGTAGAACAAAATAACCA+GGG + chr1_1:67480609-67480628 None:intergenic 30.0%
ACTTGTAGAACAAAATAACC+AGG + chr1_1:67480610-67480629 None:intergenic 30.0%
TTCTAGTCAGTTAACTTAAC+TGG - chr1_1:67480796-67480815 Msa0038190:intron 30.0%
! AACTTTTCTTCTAAGTAGTG+CGG - chr1_1:67480892-67480911 Msa0038190:intron 30.0%
GCTATAGATATCATTGCAAT+CGG - chr1_1:67480914-67480933 Msa0038190:intron 30.0%
!!! GCCTTCAGTTTTAAATAACT+TGG + chr1_1:67481066-67481085 None:intergenic 30.0%
TTTGTTTATTTCATACAGGC+AGG - chr1_1:67481207-67481226 Msa0038190:intron 30.0%
ACCTTGAGTTTCATAAGTAT+GGG + chr1_1:67481292-67481311 None:intergenic 30.0%
!! AAACTTTTGTTTGCTTTTGC+AGG - chr1_1:67481370-67481389 Msa0038190:intron 30.0%
CAAGATTTATAAACCATTCC+TGG - chr1_1:67481464-67481483 Msa0038190:CDS 30.0%
AAATAGGAGGATAACAAAAC+AGG + chr1_1:67481557-67481576 None:intergenic 30.0%
ACAAGAAAATGGAATGTCAT+GGG - chr1_1:67481640-67481659 Msa0038190:intron 30.0%
! AGTTAAGCCTTTTAAATGCA+TGG - chr1_1:67481899-67481918 Msa0038190:intron 30.0%
! GTTAAGCCTTTTAAATGCAT+GGG - chr1_1:67481900-67481919 Msa0038190:intron 30.0%
GTGTTAATAAATAATGAGGC+AGG - chr1_1:67482053-67482072 Msa0038190:intron 30.0%
AAAAACTAAGCACAAAAGTG+GGG + chr1_1:67482482-67482501 None:intergenic 30.0%
CAAAAAACTAAGCACAAAAG+TGG + chr1_1:67482484-67482503 None:intergenic 30.0%
! TTGCAGAAGTTATATGGTTT+TGG + chr1_1:67482576-67482595 None:intergenic 30.0%
TCATATTTCTTGTCATATCC+TGG - chr1_1:67482647-67482666 Msa0038190:intron 30.0%
AATTCCTTTATATGACTCTG+CGG - chr1_1:67482718-67482737 Msa0038190:intron 30.0%
ATTCAACCACTGAATTCAAT+TGG - chr1_1:67482836-67482855 Msa0038190:intron 30.0%
TTCAACCACTGAATTCAATT+GGG - chr1_1:67482837-67482856 Msa0038190:intron 30.0%
ATCTCTACCAAAAGATCAAA+GGG - chr1_1:67483001-67483020 Msa0038190:intron 30.0%
GCTTTCAATTATGTTACTAG+TGG - chr1_1:67483180-67483199 Msa0038190:intron 30.0%
!! ATCAATTACGGATTAGATGA+GGG + chr1_1:67483836-67483855 Msa0038200:CDS 30.0%
! TTGATGATTCACAGAATACA+TGG - chr1_1:67483851-67483870 Msa0038190:five_prime_UTR 30.0%
CGAAATTCATAACAGAACAT+AGG - chr1_1:67484020-67484039 Msa0038190:five_prime_UTR 30.0%
CAATAAGAGGAATGGGAAAA+TGG + chr1_1:67478011-67478030 None:intergenic 35.0%
AAGTTGGCAATAAGAGGAAT+GGG + chr1_1:67478018-67478037 None:intergenic 35.0%
AAAGTTGGCAATAAGAGGAA+TGG + chr1_1:67478019-67478038 None:intergenic 35.0%
GAACAAAAGTTGGCAATAAG+AGG + chr1_1:67478024-67478043 None:intergenic 35.0%
! TGCCAACTTTTGTTCTCATA+TGG - chr1_1:67478029-67478048 Msa0038190:CDS 35.0%
!!! GACTTTTTTATCTGCGTATG+AGG - chr1_1:67478573-67478592 Msa0038190:intron 35.0%
ATTGAGAAGAGAACCTACAA+GGG + chr1_1:67478686-67478705 None:intergenic 35.0%
AATTGAGAAGAGAACCTACA+AGG + chr1_1:67478687-67478706 None:intergenic 35.0%
ATTGATTGATCGATGTTACC+GGG + chr1_1:67478766-67478785 None:intergenic 35.0%
ATCGATCAATCAATTAACGG+CGG - chr1_1:67478772-67478791 Msa0038190:CDS 35.0%
TTGAAGGAAGATTGGACAAT+GGG + chr1_1:67478956-67478975 None:intergenic 35.0%
ATTGAAGGAAGATTGGACAA+TGG + chr1_1:67478957-67478976 None:intergenic 35.0%
ATTGTCCAATCTTCCTTCAA+TGG - chr1_1:67478956-67478975 Msa0038190:CDS 35.0%
GCTGGGAGATTAATTCAATA+TGG + chr1_1:67479116-67479135 None:intergenic 35.0%
AAAGAGAGGGATAAGAGAAT+TGG + chr1_1:67479189-67479208 None:intergenic 35.0%
!!! AAAATATTTTGGTTGCGAGG+CGG + chr1_1:67479264-67479283 None:intergenic 35.0%
!!! CTCAAAATATTTTGGTTGCG+AGG + chr1_1:67479267-67479286 None:intergenic 35.0%
TGTACTCTTACAAAAGCAGA+GGG + chr1_1:67479376-67479395 None:intergenic 35.0%
! CTTTTAGGCGAATAGCAATA+AGG + chr1_1:67479653-67479672 None:intergenic 35.0%
TAGAAATTTCATCCGACTTC+TGG - chr1_1:67479684-67479703 Msa0038190:intron 35.0%
TGACTAAAAACTATCCCACA+AGG + chr1_1:67479710-67479729 None:intergenic 35.0%
!!! TGGGATAGTTTTTAGTCAGT+GGG - chr1_1:67479712-67479731 Msa0038190:intron 35.0%
!! TTTTTAGTCAGTGGGATAGA+AGG - chr1_1:67479720-67479739 Msa0038190:intron 35.0%
! GATATTTGATTTCAGGGCAT+CGG + chr1_1:67479756-67479775 None:intergenic 35.0%
! CTAGTGCGATATTTGATTTC+AGG + chr1_1:67479763-67479782 None:intergenic 35.0%
TTCTGTATTATGAAGCAGGA+AGG + chr1_1:67479855-67479874 None:intergenic 35.0%
CATAATACAGAAGAGGAAGT+TGG - chr1_1:67479863-67479882 Msa0038190:intron 35.0%
TGAGGGATCTAAATTCCAAT+GGG + chr1_1:67480083-67480102 None:intergenic 35.0%
! TTTTACAAAGGATGCCACAA+GGG + chr1_1:67480382-67480401 None:intergenic 35.0%
! TTTTTACAAAGGATGCCACA+AGG + chr1_1:67480383-67480402 None:intergenic 35.0%
TGGCATCCTTTGTAAAAATC+AGG - chr1_1:67480385-67480404 Msa0038190:CDS 35.0%
TATTTGTATTCTGCTTTCCC+TGG - chr1_1:67480589-67480608 Msa0038190:CDS 35.0%
GTTAACTTAACTGGCATAAC+TGG - chr1_1:67480805-67480824 Msa0038190:intron 35.0%
TAGCAGTCTGTAGTTACAAT+TGG - chr1_1:67480858-67480877 Msa0038190:intron 35.0%
! TTATTTAAAACTGAAGGCCG+AGG - chr1_1:67481068-67481087 Msa0038190:intron 35.0%
! TATTTAAAACTGAAGGCCGA+GGG - chr1_1:67481069-67481088 Msa0038190:intron 35.0%
TTTGGCTGATGAGGAAATTA+AGG - chr1_1:67481100-67481119 Msa0038190:intron 35.0%
ATCATATACTGGGGAAATTC+AGG - chr1_1:67481125-67481144 Msa0038190:intron 35.0%
CAGTTTGTCATTGAATACTG+TGG - chr1_1:67481231-67481250 Msa0038190:intron 35.0%
TCCCATACTTATGAAACTCA+AGG - chr1_1:67481288-67481307 Msa0038190:intron 35.0%
GACCTTGAGTTTCATAAGTA+TGG + chr1_1:67481293-67481312 None:intergenic 35.0%
TCTATCGATGCAACTAGAAA+AGG - chr1_1:67481433-67481452 Msa0038190:intron 35.0%
TTTGTTTGAAGAGGTTTACC+AGG + chr1_1:67481485-67481504 None:intergenic 35.0%
TACAATACTTGCATATTGGC+AGG + chr1_1:67481532-67481551 None:intergenic 35.0%
GGTCTACAATACTTGCATAT+TGG + chr1_1:67481536-67481555 None:intergenic 35.0%
! TTCAGTTGATGTCAAACCTT+GGG + chr1_1:67481587-67481606 None:intergenic 35.0%
! ATTCAGTTGATGTCAAACCT+TGG + chr1_1:67481588-67481607 None:intergenic 35.0%
! CATTTTCTTGTCTCACAGTT+TGG + chr1_1:67481631-67481650 None:intergenic 35.0%
CAAACTGTGAGACAAGAAAA+TGG - chr1_1:67481629-67481648 Msa0038190:intron 35.0%
GACAAGAAAATGGAATGTCA+TGG - chr1_1:67481639-67481658 Msa0038190:intron 35.0%
CAAGAAAATGGAATGTCATG+GGG - chr1_1:67481641-67481660 Msa0038190:intron 35.0%
AAGAAAATGGAATGTCATGG+GGG - chr1_1:67481642-67481661 Msa0038190:intron 35.0%
AAGAGTTGGAATATTTGCAC+TGG - chr1_1:67481669-67481688 Msa0038190:intron 35.0%
TATTCCTATTGGAACTGAAC+TGG - chr1_1:67481696-67481715 Msa0038190:intron 35.0%
! CTCAAATGTTCTGAATTCCT+TGG - chr1_1:67481778-67481797 Msa0038190:intron 35.0%
ATCATGCCCATGCATTTAAA+AGG + chr1_1:67481909-67481928 None:intergenic 35.0%
! TAGTGGGTCTTAAAAACTCA+TGG + chr1_1:67481947-67481966 None:intergenic 35.0%
TCACCTTTCAAGCTATTAGT+GGG + chr1_1:67481963-67481982 None:intergenic 35.0%
ATCACCTTTCAAGCTATTAG+TGG + chr1_1:67481964-67481983 None:intergenic 35.0%
ACTAATAGCTTGAAAGGTGA+TGG - chr1_1:67481963-67481982 Msa0038190:intron 35.0%
! TTCCTCGTGTTTGGAATAAT+CGG - chr1_1:67482252-67482271 Msa0038190:intron 35.0%
GTGCTGTATTCATCTCTAAA+AGG - chr1_1:67482339-67482358 Msa0038190:intron 35.0%
! TCGTTTTATCTGTTACTGAC+TGG - chr1_1:67482368-67482387 Msa0038190:intron 35.0%
TGCTAGGATCTCATCATTAT+GGG + chr1_1:67482432-67482451 None:intergenic 35.0%
ATAATGATGAGATCCTAGCA+CGG - chr1_1:67482432-67482451 Msa0038190:intron 35.0%
AAAACTAAGCACAAAAGTGG+GGG + chr1_1:67482481-67482500 None:intergenic 35.0%
!!! ATGGTTTTGGATAAAGAGGA+AGG + chr1_1:67482563-67482582 None:intergenic 35.0%
AGCTTTCAGTATAATAGCCA+TGG + chr1_1:67482786-67482805 None:intergenic 35.0%
TTGATCCCAATTGAATTCAG+TGG + chr1_1:67482845-67482864 None:intergenic 35.0%
CTGAATTCAATTGGGATCAA+TGG - chr1_1:67482845-67482864 Msa0038190:intron 35.0%
GAAAACTGAAATAGAAAGCG+AGG - chr1_1:67482886-67482905 Msa0038190:intron 35.0%
AAGATCCTGTTTGGTATCTT+GGG + chr1_1:67482927-67482946 Msa0038200:CDS 35.0%
! CTTTGATCTTTTGGTAGAGA+TGG + chr1_1:67483002-67483021 Msa0038200:intron 35.0%
CATCTCTACCAAAAGATCAA+AGG - chr1_1:67483000-67483019 Msa0038190:intron 35.0%
TCTCTACCAAAAGATCAAAG+GGG - chr1_1:67483002-67483021 Msa0038190:intron 35.0%
! GGAGGAGATTTTAGATTATG+AGG - chr1_1:67483102-67483121 Msa0038190:intron 35.0%
TGGACTAAAACTTAGTTACC+TGG - chr1_1:67483200-67483219 Msa0038190:intron 35.0%
! TGTCATTTCATAGTACGATC+TGG - chr1_1:67483269-67483288 Msa0038190:intron 35.0%
ATGAGAACTGTCATGAATCA+CGG - chr1_1:67483427-67483446 Msa0038190:intron 35.0%
AAACGACAATGAAGCATGTA+CGG + chr1_1:67483468-67483487 Msa0038200:intron 35.0%
! GTCATCTTTTCTTTTCTGCA+TGG + chr1_1:67483558-67483577 Msa0038200:intron 35.0%
GAAAAGAAAAGATGACGCTA+CGG - chr1_1:67483562-67483581 Msa0038190:intron 35.0%
!! CATCAATTACGGATTAGATG+AGG + chr1_1:67483837-67483856 Msa0038200:CDS 35.0%
CTAGGTTCTGTTATGAACTT+CGG + chr1_1:67483904-67483923 None:intergenic 35.0%
AACTTGCAGAAGCGAGAAAA+GGG + chr1_1:67477982-67478001 None:intergenic 40.0%
AAACTTGCAGAAGCGAGAAA+AGG + chr1_1:67477983-67478002 None:intergenic 40.0%
CACTCGATTGACATAAAGGA+AGG + chr1_1:67478800-67478819 None:intergenic 40.0%
TCGATTGAGACAGAGAGTAA+AGG - chr1_1:67478843-67478862 Msa0038190:CDS 40.0%
GGGATCTTTACCTAATGATG+CGG + chr1_1:67478935-67478954 None:intergenic 40.0%
TGAAGGAAGATTGGACAATG+GGG + chr1_1:67478955-67478974 None:intergenic 40.0%
ATTAGCTACGCGATTCTTAC+CGG + chr1_1:67479003-67479022 None:intergenic 40.0%
GCTGGTAGAGTTTGTATATG+TGG + chr1_1:67479056-67479075 None:intergenic 40.0%
CATATACAAACTCTACCAGC+CGG - chr1_1:67479056-67479075 Msa0038190:CDS 40.0%
TGAATTAATCTCCCAGCTAG+TGG - chr1_1:67479119-67479138 Msa0038190:CDS 40.0%
AGCACTGCGCAAGATTAATT+TGG + chr1_1:67479312-67479331 None:intergenic 40.0%
GTGTACTCTTACAAAAGCAG+AGG + chr1_1:67479377-67479396 None:intergenic 40.0%
ACTTTGTAAAGCTGTCCTGA+CGG + chr1_1:67479476-67479495 None:intergenic 40.0%
ACTAAAGATCCAGCATAAGC+GGG + chr1_1:67479533-67479552 None:intergenic 40.0%
CACTAAAGATCCAGCATAAG+CGG + chr1_1:67479534-67479553 None:intergenic 40.0%
!!! GTGGGATAGTTTTTAGTCAG+TGG - chr1_1:67479711-67479730 Msa0038190:intron 40.0%
GAATGGAATTGGAAGTGAAG+TGG + chr1_1:67479786-67479805 None:intergenic 40.0%
TTATGAGTTCGTCAGCAGAA+TGG + chr1_1:67479803-67479822 None:intergenic 40.0%
! ACTTGATAACTTGTGACAGC+GGG + chr1_1:67479831-67479850 None:intergenic 40.0%
! CACTTGATAACTTGTGACAG+CGG + chr1_1:67479832-67479851 None:intergenic 40.0%
CCTCTTCTGTATTATGAAGC+AGG + chr1_1:67479859-67479878 None:intergenic 40.0%
CCTGCTTCATAATACAGAAG+AGG - chr1_1:67479856-67479875 Msa0038190:intron 40.0%
! CAAATCAAAGGGTACAAGGT+TGG + chr1_1:67479969-67479988 None:intergenic 40.0%
CAACCTTGTACCCTTTGATT+TGG - chr1_1:67479967-67479986 Msa0038190:intron 40.0%
!! CTTGTACCCTTTGATTTGGA+GGG - chr1_1:67479971-67479990 Msa0038190:intron 40.0%
TTCCTACCCTCCAAATCAAA+GGG + chr1_1:67479980-67479999 None:intergenic 40.0%
TTTCCTACCCTCCAAATCAA+AGG + chr1_1:67479981-67480000 None:intergenic 40.0%
!! TTTGATTTGGAGGGTAGGAA+AGG - chr1_1:67479980-67479999 Msa0038190:intron 40.0%
GTGAGGGATCTAAATTCCAA+TGG + chr1_1:67480084-67480103 None:intergenic 40.0%
CTTTGAATTGGTGGAATTGG+TGG + chr1_1:67480106-67480125 None:intergenic 40.0%
CACCAATTCCACCAATTCAA+AGG - chr1_1:67480104-67480123 Msa0038190:CDS 40.0%
AGCCTTTGAATTGGTGGAAT+TGG + chr1_1:67480109-67480128 None:intergenic 40.0%
TTCCACCAATTCAAAGGCTA+TGG - chr1_1:67480110-67480129 Msa0038190:CDS 40.0%
ATAGGCCATAGCCTTTGAAT+TGG + chr1_1:67480118-67480137 None:intergenic 40.0%
AATTCAAAGGCTATGGCCTA+TGG - chr1_1:67480117-67480136 Msa0038190:CDS 40.0%
! CATTCGATTTTCCATTCCTC+TGG + chr1_1:67480156-67480175 None:intergenic 40.0%
ACTTCTCTTTATCTCTGTGC+AGG - chr1_1:67480228-67480247 Msa0038190:intron 40.0%
AAATCAGGTGAGTTCGTGTT+TGG - chr1_1:67480400-67480419 Msa0038190:CDS 40.0%
AATCAGGTGAGTTCGTGTTT+GGG - chr1_1:67480401-67480420 Msa0038190:CDS 40.0%
!! CTTTTTAACTACCAGCAGGA+TGG + chr1_1:67480466-67480485 None:intergenic 40.0%
!! CCAACTTTTTAACTACCAGC+AGG + chr1_1:67480470-67480489 None:intergenic 40.0%
CCTGCTGGTAGTTAAAAAGT+TGG - chr1_1:67480467-67480486 Msa0038190:intron 40.0%
ATTTCTGCAAGCATGAGACA+TGG + chr1_1:67481019-67481038 None:intergenic 40.0%
GGGAAATTCAGGCCTTAATA+TGG - chr1_1:67481136-67481155 Msa0038190:intron 40.0%
!! GTTTGCTTTTGCAGGTCTTA+AGG - chr1_1:67481378-67481397 Msa0038190:intron 40.0%
TTGAAGAGGTTTACCAGGAA+TGG + chr1_1:67481480-67481499 None:intergenic 40.0%
GCACTGGAAGATATTCCTAT+TGG - chr1_1:67481685-67481704 Msa0038190:intron 40.0%
TATGCCAGTTCAGTTCCAAT+AGG + chr1_1:67481703-67481722 None:intergenic 40.0%
AGACCCACTAATAGCTTGAA+AGG - chr1_1:67481957-67481976 Msa0038190:intron 40.0%
AGCAGGAGGATACTTATCTA+TGG - chr1_1:67482275-67482294 Msa0038190:intron 40.0%
GCAGGAGGATACTTATCTAT+GGG - chr1_1:67482276-67482295 Msa0038190:intron 40.0%
! TATGGGAAGATGATGATGAC+AGG - chr1_1:67482293-67482312 Msa0038190:intron 40.0%
ATCTCATCATTATGGGGTCT+TGG + chr1_1:67482425-67482444 None:intergenic 40.0%
GCTAGGATCTCATCATTATG+GGG + chr1_1:67482431-67482450 None:intergenic 40.0%
GTGCTAGGATCTCATCATTA+TGG + chr1_1:67482433-67482452 None:intergenic 40.0%
GATGAACTCACGTCAAATGT+TGG - chr1_1:67482743-67482762 Msa0038190:intron 40.0%
ACTGAAAGCTGAAGAACCAT+CGG - chr1_1:67482796-67482815 Msa0038190:intron 40.0%
! TTTAAAACAGTGGACTCCGA+TGG + chr1_1:67482815-67482834 None:intergenic 40.0%
TCAATTGGGATCAATGGCTT+AGG - chr1_1:67482851-67482870 Msa0038190:intron 40.0%
AAATAGAAAGCGAGGACATG+AGG - chr1_1:67482894-67482913 Msa0038190:intron 40.0%
GAAGATCCTGTTTGGTATCT+TGG + chr1_1:67482928-67482947 Msa0038200:CDS 40.0%
!! TTTTTGGGGAAGATCCTGTT+TGG + chr1_1:67482936-67482955 Msa0038200:CDS 40.0%
!!! CGCGATATCGCATTTTTTTG+GGG + chr1_1:67482950-67482969 Msa0038200:CDS 40.0%
!!! GCGCGATATCGCATTTTTTT+GGG + chr1_1:67482951-67482970 Msa0038200:CDS 40.0%
!!! TGCGCGATATCGCATTTTTT+TGG + chr1_1:67482952-67482971 Msa0038200:CDS 40.0%
CTCTACCAAAAGATCAAAGG+GGG - chr1_1:67483003-67483022 Msa0038190:intron 40.0%
TCTACCAAAAGATCAAAGGG+GGG - chr1_1:67483004-67483023 Msa0038190:intron 40.0%
ATTGATGCAAAGTATGCAGC+TGG - chr1_1:67483055-67483074 Msa0038190:intron 40.0%
GTGCTTCCTTTGATGCTAAA+AGG + chr1_1:67483081-67483100 Msa0038200:intron 40.0%
! TTTAGCATCAAAGGAAGCAC+AGG - chr1_1:67483081-67483100 Msa0038190:intron 40.0%
TGACAGATGATGTGTGCATT+TGG + chr1_1:67483343-67483362 Msa0038200:intron 40.0%
ATCCTTCTCGTGTTCTTCAA+TGG + chr1_1:67483624-67483643 Msa0038200:intron 40.0%
TGTCGTAGATACACTGTCTT+GGG + chr1_1:67483648-67483667 Msa0038200:intron 40.0%
! ATGTTGCTTGTACTCCTCAA+AGG - chr1_1:67483744-67483763 Msa0038190:intron 40.0%
! TGTTGCTTGTACTCCTCAAA+GGG - chr1_1:67483745-67483764 Msa0038190:intron 40.0%
CGAAGTTCATAACAGAACCT+AGG - chr1_1:67483902-67483921 Msa0038190:five_prime_UTR 40.0%
! GGATTTGTTTATCAGGTCCT+AGG + chr1_1:67483922-67483941 None:intergenic 40.0%
TGCACTAGGTAGCATTAACA+TGG + chr1_1:67483967-67483986 None:intergenic 40.0%
AATGTTCTCAGAGTTAGTGC+TGG + chr1_1:67483990-67484009 None:intergenic 40.0%
! GTTGGTGAAAAAGGGAAGTG+AGG - chr1_1:67477824-67477843 Msa0038190:three_prime_UTR 45.0%
AGAAGCGAGAAAAGGGGTTT+GGG + chr1_1:67477975-67477994 None:intergenic 45.0%
ACTTGCAGAAGCGAGAAAAG+GGG + chr1_1:67477981-67478000 None:intergenic 45.0%
TCTCTCTTATGGTAGGTTCC+AGG - chr1_1:67478494-67478513 Msa0038190:intron 45.0%
GAAAATTATTGGACCGGACC+TGG + chr1_1:67478515-67478534 None:intergenic 45.0%
ACCACTGAATCCCTTGCTTT+CGG + chr1_1:67478647-67478666 None:intergenic 45.0%
! GATTCAGTGGTCTTACCCTT+GGG - chr1_1:67478656-67478675 Msa0038190:intron 45.0%
CAGGCACTCGATTGACATAA+AGG + chr1_1:67478804-67478823 None:intergenic 45.0%
CTAATGATGCGGAGCGAATT+CGG + chr1_1:67478924-67478943 None:intergenic 45.0%
AAATTGATATATCCGCCGGC+TGG + chr1_1:67479074-67479093 None:intergenic 45.0%
TGCATAGCCCATGAGAATGA+TGG + chr1_1:67479504-67479523 None:intergenic 45.0%
TAAAGATCCAGCATAAGCGG+GGG + chr1_1:67479531-67479550 None:intergenic 45.0%
CTAAAGATCCAGCATAAGCG+GGG + chr1_1:67479532-67479551 None:intergenic 45.0%
TTAGTCAGTGGGATAGAAGG+TGG - chr1_1:67479723-67479742 Msa0038190:intron 45.0%
GTTCGTCAGCAGAATGGAAT+TGG + chr1_1:67479797-67479816 None:intergenic 45.0%
! CCTCCAAATCAAAGGGTACA+AGG + chr1_1:67479973-67479992 None:intergenic 45.0%
!! CCTTGTACCCTTTGATTTGG+AGG - chr1_1:67479970-67479989 Msa0038190:intron 45.0%
!! TACCCTTTGATTTGGAGGGT+AGG - chr1_1:67479975-67479994 Msa0038190:intron 45.0%
AGGTGGAGTGTGGAGTATAA+TGG - chr1_1:67480000-67480019 Msa0038190:intron 45.0%
!! TGGGCTGGTATTCCATTGTT+TGG + chr1_1:67480064-67480083 None:intergenic 45.0%
ACAATGGAATACCAGCCCAT+TGG - chr1_1:67480065-67480084 Msa0038190:CDS 45.0%
GGATCTAAATTCCAATGGGC+TGG + chr1_1:67480079-67480098 None:intergenic 45.0%
!! ATTGGTGGAATTGGTGGTGA+GGG + chr1_1:67480100-67480119 None:intergenic 45.0%
!! AATTGGTGGAATTGGTGGTG+AGG + chr1_1:67480101-67480120 None:intergenic 45.0%
ATTTAGACACCCATCTCCAC+AGG + chr1_1:67480324-67480343 None:intergenic 45.0%
GCTTTAACCTGTGTCTCTGA+AGG - chr1_1:67480513-67480532 Msa0038190:intron 45.0%
ATAAGTATGGGATCTGCGCT+TGG + chr1_1:67481280-67481299 None:intergenic 45.0%
! AGTTGATGTCAAACCTTGGG+CGG + chr1_1:67481584-67481603 None:intergenic 45.0%
GTCATGGGGGAAATAAGAGT+TGG - chr1_1:67481655-67481674 Msa0038190:intron 45.0%
! TGAATGGTTTGGAGGTGCAA+AGG - chr1_1:67481735-67481754 Msa0038190:intron 45.0%
TTCCTTGGAGCAAAATCTCG+TGG - chr1_1:67481793-67481812 Msa0038190:intron 45.0%
! AACCACGAGATTTTGCTCCA+AGG + chr1_1:67481798-67481817 None:intergenic 45.0%
! TAGCTTGAAAGGTGATGGCT+AGG - chr1_1:67481968-67481987 Msa0038190:intron 45.0%
CTACTCTTCTTCCTCGTGTT+TGG - chr1_1:67482243-67482262 Msa0038190:intron 45.0%
CTCCGATTATTCCAAACACG+AGG + chr1_1:67482257-67482276 None:intergenic 45.0%
! GTGTTTGGAATAATCGGAGC+AGG - chr1_1:67482258-67482277 Msa0038190:intron 45.0%
! TTTGGAATAATCGGAGCAGG+AGG - chr1_1:67482261-67482280 Msa0038190:intron 45.0%
TCATTATGGGGTCTTGGAGT+GGG + chr1_1:67482419-67482438 None:intergenic 45.0%
ATCATTATGGGGTCTTGGAG+TGG + chr1_1:67482420-67482439 None:intergenic 45.0%
TCCTTTATATGACTCTGCGG+AGG - chr1_1:67482721-67482740 Msa0038190:intron 45.0%
TCCTCCGCAGAGTCATATAA+AGG + chr1_1:67482725-67482744 None:intergenic 45.0%
GAACTCACGTCAAATGTTGG+TGG - chr1_1:67482746-67482765 Msa0038190:intron 45.0%
TGGACAGAGTGAACAATCCA+TGG - chr1_1:67482766-67482785 Msa0038190:intron 45.0%
GTACTCCCAAGATACCAAAC+AGG - chr1_1:67482919-67482938 Msa0038190:intron 45.0%
ATTCGAAGTAACACTGCAGG+AGG - chr1_1:67482971-67482990 Msa0038190:intron 45.0%
! CTTTCCCCCCTTTGATCTTT+TGG + chr1_1:67483011-67483030 Msa0038200:intron 45.0%
!!! AGCTGGCCTTTTAGCATCAA+AGG - chr1_1:67483072-67483091 Msa0038190:intron 45.0%
TTCTCGTGTTCTTCAATGGC+AGG + chr1_1:67483620-67483639 Msa0038200:intron 45.0%
TGCCATTGAAGAACACGAGA+AGG - chr1_1:67483619-67483638 Msa0038190:intron 45.0%
CTGTCGTAGATACACTGTCT+TGG + chr1_1:67483649-67483668 Msa0038200:intron 45.0%
AGTAGCAGAGAAGTGGATAC+AGG - chr1_1:67483667-67483686 Msa0038190:CDS 45.0%
TTCCTGCCTAAAACTCAAGG+CGG - chr1_1:67483691-67483710 Msa0038190:intron 45.0%
! CAAACTCCGCCTTGAGTTTT+AGG + chr1_1:67483700-67483719 Msa0038200:intron 45.0%
! TTCAGTACCTTTTGCTTGGC+CGG + chr1_1:67483774-67483793 Msa0038200:CDS 45.0%
! CGACTTCAGTACCTTTTGCT+TGG + chr1_1:67483778-67483797 Msa0038200:CDS 45.0%
GTGCACTAGGTAGCATAACA+TGG + chr1_1:67484085-67484104 None:intergenic 45.0%
!!! TATTATTATTATTATTTTGA+AGG - chr1_1:67478131-67478150 Msa0038190:CDS 5.0%
CGTTGGTACTGTAGTGGTAG+CGG + chr1_1:67477856-67477875 None:intergenic 50.0%
AAGCGAGAAAAGGGGTTTGG+GGG + chr1_1:67477973-67477992 None:intergenic 50.0%
GAAGCGAGAAAAGGGGTTTG+GGG + chr1_1:67477974-67477993 None:intergenic 50.0%
CAGAAGCGAGAAAAGGGGTT+TGG + chr1_1:67477976-67477995 None:intergenic 50.0%
GGCAAATCTTCAGCAGCATG+AGG + chr1_1:67478159-67478178 None:intergenic 50.0%
CACTCGGCAGCATTACTAAC+TGG - chr1_1:67478338-67478357 Msa0038190:intron 50.0%
CTTATGGTAGGTTCCAGGTC+CGG - chr1_1:67478499-67478518 Msa0038190:intron 50.0%
! GGATTCAGTGGTCTTACCCT+TGG - chr1_1:67478655-67478674 Msa0038190:intron 50.0%
AGAAGAGAACCTACAAGGGC+CGG + chr1_1:67478682-67478701 None:intergenic 50.0%
GCCTGACTTCTCTATCTGAC+CGG - chr1_1:67478819-67478838 Msa0038190:CDS 50.0%
ACTCTCTGTCTCAATCGAGC+CGG + chr1_1:67478841-67478860 None:intergenic 50.0%
! CAGAGAGTAAAGGCGCGAAT+CGG - chr1_1:67478853-67478872 Msa0038190:CDS 50.0%
! AAAGGCGCGAATCGGCTAAA+CGG - chr1_1:67478861-67478880 Msa0038190:CDS 50.0%
TAAACGGCTGAGTCCGAGAT+TGG - chr1_1:67478877-67478896 Msa0038190:CDS 50.0%
AAACGGCTGAGTCCGAGATT+GGG - chr1_1:67478878-67478897 Msa0038190:CDS 50.0%
! GCTAGCTCTTCTCCCAATCT+CGG + chr1_1:67478893-67478912 None:intergenic 50.0%
CGAATTCGCTCCGCATCATT+AGG - chr1_1:67478922-67478941 Msa0038190:CDS 50.0%
ATACAAACTCTACCAGCCGG+CGG - chr1_1:67479059-67479078 Msa0038190:CDS 50.0%
!!! ATTTTGGTTGCGAGGCGGAA+GGG + chr1_1:67479259-67479278 None:intergenic 50.0%
!!! TATTTTGGTTGCGAGGCGGA+AGG + chr1_1:67479260-67479279 None:intergenic 50.0%
ATACTCTTGCGAAGACCGTC+AGG - chr1_1:67479458-67479477 Msa0038190:intron 50.0%
AAAGATCCAGCATAAGCGGG+GGG + chr1_1:67479530-67479549 None:intergenic 50.0%
TATCCCACAAGGCCAGAAGT+CGG + chr1_1:67479699-67479718 None:intergenic 50.0%
GATTTGGAGGGTAGGAAAGG+TGG - chr1_1:67479983-67480002 Msa0038190:intron 50.0%
GGCCATAGCCTTTGAATTGG+TGG + chr1_1:67480115-67480134 None:intergenic 50.0%
AGGCTATGGCCTATGGTACA+AGG - chr1_1:67480124-67480143 Msa0038190:CDS 50.0%
! GATTTTCCATTCCTCTGGCC+TGG + chr1_1:67480151-67480170 None:intergenic 50.0%
GTGCAGGCATAAGAAGCAGA+AGG - chr1_1:67480244-67480263 Msa0038190:intron 50.0%
CAGGCATAAGAAGCAGAAGG+AGG - chr1_1:67480247-67480266 Msa0038190:intron 50.0%
GCATAAGAAGCAGAAGGAGG+AGG - chr1_1:67480250-67480269 Msa0038190:intron 50.0%
TGCCACAAGGGCAAAATCCA+GGG + chr1_1:67480370-67480389 None:intergenic 50.0%
ATGCCACAAGGGCAAAATCC+AGG + chr1_1:67480371-67480390 None:intergenic 50.0%
TCGCACTATAACCATCCTGC+TGG - chr1_1:67480452-67480471 Msa0038190:intron 50.0%
ACAAGTGCCTTCAGAGACAC+AGG + chr1_1:67480523-67480542 None:intergenic 50.0%
TTAAAACTGAAGGCCGAGGG+TGG - chr1_1:67481072-67481091 Msa0038190:intron 50.0%
TAAAACTGAAGGCCGAGGGT+GGG - chr1_1:67481073-67481092 Msa0038190:intron 50.0%
AACATTTGAGCGCACCACAG+AGG + chr1_1:67481768-67481787 None:intergenic 50.0%
CATTATGGGGTCTTGGAGTG+GGG + chr1_1:67482418-67482437 None:intergenic 50.0%
CAAGCACAAGTTTCCGTGCT+AGG + chr1_1:67482448-67482467 None:intergenic 50.0%
CGCATTCGAAGTAACACTGC+AGG - chr1_1:67482968-67482987 Msa0038190:intron 50.0%
! AGCATCAAAGGAAGCACAGG+AGG - chr1_1:67483084-67483103 Msa0038190:intron 50.0%
CTACGACAGTAGCAGAGAAG+TGG - chr1_1:67483660-67483679 Msa0038190:CDS 50.0%
GGCTTCCTGCCTAAAACTCA+AGG - chr1_1:67483688-67483707 Msa0038190:intron 50.0%
! TCAGTACCTTTTGCTTGGCC+GGG + chr1_1:67483773-67483792 Msa0038200:CDS 50.0%
!! AGAGTTAGTGCTGGTGCACT+AGG + chr1_1:67483981-67484000 None:intergenic 50.0%
! GCGTTGCGTTGGTACTGTAG+TGG + chr1_1:67477862-67477881 None:intergenic 55.0%
CTTCTTGCGTTGCGTTGCGT+TGG + chr1_1:67477873-67477892 None:intergenic 55.0%
AGCGAGAAAAGGGGTTTGGG+GGG + chr1_1:67477972-67477991 None:intergenic 55.0%
! TTGTTGGTGGGCCGAAAGCA+AGG - chr1_1:67478633-67478652 Msa0038190:intron 55.0%
! TGTTGGTGGGCCGAAAGCAA+GGG - chr1_1:67478634-67478653 Msa0038190:intron 55.0%
GCCGAAAGCAAGGGATTCAG+TGG - chr1_1:67478643-67478662 Msa0038190:intron 55.0%
! CTGTCTCTGTTGCTGCTTCC+CGG - chr1_1:67478745-67478764 Msa0038190:CDS 55.0%
GCCGGTCAGATAGAGAAGTC+AGG + chr1_1:67478823-67478842 None:intergenic 55.0%
GTGGTCGCCCAGTATGACAT+AGG + chr1_1:67479037-67479056 None:intergenic 55.0%
!! TCATCCGACTTCTGGCCTTG+TGG - chr1_1:67479692-67479711 Msa0038190:intron 55.0%
!! CATCCGACTTCTGGCCTTGT+GGG - chr1_1:67479693-67479712 Msa0038190:intron 55.0%
AGGGTAGGAAAGGTGGAGTG+TGG - chr1_1:67479990-67480009 Msa0038190:intron 55.0%
TGGCCTATGGTACAAGGACC+AGG - chr1_1:67480130-67480149 Msa0038190:CDS 55.0%
TGGCCTGGTCCTTGTACCAT+AGG + chr1_1:67480136-67480155 None:intergenic 55.0%
! ACCCCTGGATTTTGCCCTTG+TGG - chr1_1:67480365-67480384 Msa0038190:CDS 55.0%
GCCACAAGGGCAAAATCCAG+GGG + chr1_1:67480369-67480388 None:intergenic 55.0%
AAAACTGAAGGCCGAGGGTG+GGG - chr1_1:67481074-67481093 Msa0038190:intron 55.0%
!! GTGGGGTCTTTTGGCTGATG+AGG - chr1_1:67481091-67481110 Msa0038190:intron 55.0%
AACCTTGGGCGGTGGGAAAT+AGG + chr1_1:67481573-67481592 None:intergenic 55.0%
GATGTCAAACCTTGGGCGGT+GGG + chr1_1:67481580-67481599 None:intergenic 55.0%
TGATGTCAAACCTTGGGCGG+TGG + chr1_1:67481581-67481600 None:intergenic 55.0%
!!! CTCCGCCTTGAGTTTTAGGC+AGG + chr1_1:67483696-67483715 Msa0038200:intron 55.0%
!! TGTACTCCTCAAAGGGCACC+CGG - chr1_1:67483752-67483771 Msa0038190:intron 55.0%
ATTCCGCTGTTGGACCCGTG+CGG - chr1_1:67477765-67477784 Msa0038190:three_prime_UTR 60.0%
GCGAGAAAAGGGGTTTGGGG+GGG + chr1_1:67477971-67477990 None:intergenic 60.0%
! CAGTGGTCTTACCCTTGGGC+CGG - chr1_1:67478660-67478679 Msa0038190:intron 60.0%
GCATTTCCCCCCGCTTATGC+TGG - chr1_1:67479521-67479540 Msa0038190:intron 60.0%
TGGTACAAGGACCAGGCCAG+AGG - chr1_1:67480137-67480156 Msa0038190:CDS 60.0%
CAAGGACCAGGCCAGAGGAA+TGG - chr1_1:67480142-67480161 Msa0038190:CDS 60.0%
GATGATCCCGACAGTGCCTG+TGG - chr1_1:67480305-67480324 Msa0038190:intron 60.0%
! CCATCTCCACAGGCACTGTC+GGG + chr1_1:67480314-67480333 None:intergenic 60.0%
! CCCATCTCCACAGGCACTGT+CGG + chr1_1:67480315-67480334 None:intergenic 60.0%
CCGACAGTGCCTGTGGAGAT+GGG - chr1_1:67480312-67480331 Msa0038190:intron 60.0%
! ACCAGCACTGAATGCACCCC+TGG - chr1_1:67480350-67480369 Msa0038190:intron 60.0%
! TCCAGGGGTGCATTCAGTGC+TGG + chr1_1:67480354-67480373 None:intergenic 60.0%
CAGCCAAAAGACCCCACCCT+CGG + chr1_1:67481088-67481107 None:intergenic 60.0%
CTTGGGCGGTGGGAAATAGG+AGG + chr1_1:67481570-67481589 None:intergenic 60.0%
CTCCTATTTCCCACCGCCCA+AGG - chr1_1:67481568-67481587 Msa0038190:CDS 60.0%
GCAAAGGTTCGCTGCCTCTG+TGG - chr1_1:67481751-67481770 Msa0038190:intron 60.0%
ATGGGGTCTTGGAGTGGGGA+AGG + chr1_1:67482414-67482433 None:intergenic 60.0%
TGTTGGACCCGTGCGGAGCA+CGG - chr1_1:67477772-67477791 Msa0038190:three_prime_UTR 65.0%
ACCTACAAGGGCCGGCCCAA+GGG + chr1_1:67478674-67478693 None:intergenic 65.0%
AACCTACAAGGGCCGGCCCA+AGG + chr1_1:67478675-67478694 None:intergenic 65.0%
CCCGACAGTGCCTGTGGAGA+TGG - chr1_1:67480311-67480330 Msa0038190:intron 65.0%
! AGGCCGAGGGTGGGGTCTTT+TGG - chr1_1:67481082-67481101 Msa0038190:intron 65.0%
! AGGGCACCCGGCCAAGCAAA+AGG - chr1_1:67483764-67483783 Msa0038190:intron 65.0%
GCTCCGCACGGGTCCAACAG+CGG + chr1_1:67477771-67477790 None:intergenic 70.0%
GTTGGACCCGTGCGGAGCAC+GGG - chr1_1:67477773-67477792 Msa0038190:three_prime_UTR 70.0%
ACACCGACCCGTGCTCCGCA+CGG + chr1_1:67477783-67477802 None:intergenic 70.0%
ACCCTTGGGCCGGCCCTTGT+AGG - chr1_1:67478670-67478689 Msa0038190:intron 70.0%
GCTTGGCCGGGTGCCCTTTG+AGG + chr1_1:67483761-67483780 Msa0038200:CDS 70.0%
GACCCGTGCGGAGCACGGGT+CGG - chr1_1:67477777-67477796 Msa0038190:three_prime_UTR 75.0%
CACCGACCCGTGCTCCGCAC+GGG + chr1_1:67477782-67477801 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 67477734 67484111 67477734 ID=Msa0038190;Name=Msa0038190
chr1_1 mRNA 67477734 67484111 67477734 ID=Msa0038190-mRNA-1;Parent=Msa0038190;Name=Msa0038190-mRNA-1;_AED=0.16;_eAED=0.16;_QI=314|1|1|1|1|1|10|261|478
chr1_1 exon 67477734 67478282 67477734 ID=Msa0038190-mRNA-1:exon:21959;Parent=Msa0038190-mRNA-1
chr1_1 exon 67478722 67479142 67478722 ID=Msa0038190-mRNA-1:exon:21958;Parent=Msa0038190-mRNA-1
chr1_1 exon 67479531 67479565 67479531 ID=Msa0038190-mRNA-1:exon:21957;Parent=Msa0038190-mRNA-1
chr1_1 exon 67480023 67480221 67480023 ID=Msa0038190-mRNA-1:exon:21956;Parent=Msa0038190-mRNA-1
chr1_1 exon 67480360 67480453 67480360 ID=Msa0038190-mRNA-1:exon:21955;Parent=Msa0038190-mRNA-1
chr1_1 exon 67480536 67480620 67480536 ID=Msa0038190-mRNA-1:exon:21954;Parent=Msa0038190-mRNA-1
chr1_1 exon 67480724 67480810 67480724 ID=Msa0038190-mRNA-1:exon:21953;Parent=Msa0038190-mRNA-1
chr1_1 exon 67481439 67481595 67481439 ID=Msa0038190-mRNA-1:exon:21952;Parent=Msa0038190-mRNA-1
chr1_1 exon 67483625 67483692 67483625 ID=Msa0038190-mRNA-1:exon:21951;Parent=Msa0038190-mRNA-1
chr1_1 exon 67483795 67484111 67483795 ID=Msa0038190-mRNA-1:exon:21950;Parent=Msa0038190-mRNA-1
chr1_1 five_prime_UTR 67483798 67484111 67483798 ID=Msa0038190-mRNA-1:five_prime_utr;Parent=Msa0038190-mRNA-1
chr1_1 CDS 67483795 67483797 67483795 ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1 CDS 67483625 67483692 67483625 ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1 CDS 67481439 67481595 67481439 ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1 CDS 67480724 67480810 67480724 ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1 CDS 67480536 67480620 67480536 ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1 CDS 67480360 67480453 67480360 ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1 CDS 67480023 67480221 67480023 ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1 CDS 67479531 67479565 67479531 ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1 CDS 67478722 67479142 67478722 ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1 CDS 67477995 67478282 67477995 ID=Msa0038190-mRNA-1:cds;Parent=Msa0038190-mRNA-1
chr1_1 three_prime_UTR 67477734 67477994 67477734 ID=Msa0038190-mRNA-1:three_prime_utr;Parent=Msa0038190-mRNA-1
Gene Sequence

>Msa0038190

ATGGAACCTCATGCTGCTGAAGATTTGCCTCAATACATTCATATCAATCAAAATGATTTTTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAGGTATGATGAAGATGATCCCGACAGTGCCTGTGGAGATGGGTGTCTAAATGTATTGACCAGCACTGAATGCACCCCTGGATTTTGCCCTTGTGGCATCCTTTGTAAAAATCAGAAATTTCAGAAATGTGAATATGCAAAAACCAAGTTATTTAAAACTGAAGGCCGAGGGTGGGGTCTTTTGGCTGATGAGGAAATTAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGCAAAGAAGCCAAGCGCAGATCCCATACTTATGAAACTCAAGGTCTTAAGGATGCATTTATCATTTCTCTTAATGCGTCTGAATCTATCGATGCAACTAGAAAAGGAAGCCTTGCAAGATTTATAAACCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCATGGGGGAAATAAGAGTTGGAATATTTGCACTGGAAGATATTCCTATTGGAACTGAACTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCTCAAATGTTCTGAATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACTCACGTCAAATGTTGGTGGACAGAGTGAACAATCCATGGCTATTATACTGAAAGCTGAAGAACCATCGGAGTCCACTGTTTTAAATATTCAACCACTGAATTCAATTGGGATCAATGGCTTAGGTATTCAGAAAATGAAAACTGAAATAGAAAGCGAGGACATGAGGTTGTACTCCCAAGATACCAAACAGGATCTTCCCCAAAAAAATGCGATATCGCGCATTCGAAGTAACACTGCAGGAGGAAAGTCCATCTCTACCAAAAGATCAAAGGGGGGAAAGCTTAAAAATCGCATACAGAAGAAAATTGATGCAAAGTATGCAGCTGGCCTTTTAGCATCAAAGGAAGCACAGGAGGAGATTTTAGATTATGAGAAAAGAAAAGATGACGCTACGGAAGCCCTTGATTCTTTATACAATGAAATACGGCCTGCCATTGAAGAACACGAGAAGGATACCCAAGACAGTGTATCTACGACAGTAGCAGAGAAGTGGATACAGGCTTCCTGCCTAAAACTCAAGGCGGAGTTTGATCTTTACTCGTCAATTATTAAAAATGTTGCTTGTACTCCTCAAAGGGCACCCGGCCAAGCAAAAGGTACTGAAGTCGATAACGAAGACAAAATGAAGCTTTTGACGTTCTCGCCCTCATCTAATCCGTAA
Protein sequence

>Msa0038190

MEPHAAEDLPQYIHINQNDFFMRRHKKQKEEDIAICECRYDEDDPDSACGDGCLNVLTSTECTPGFCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKAGQFVIEYCGEVISCKEAKRRSHTYETQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVMGEIRVGIFALEDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSEFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTSNVGGQSEQSMAIILKAEEPSESTVLNIQPLNSIGINGLGIQKMKTEIESEDMRLYSQDTKQDLPQKNAISRIRSNTAGGKSISTKRSKGGKLKNRIQKKIDAKYAAGLLASKEAQEEILDYEKRKDDATEALDSLYNEIRPAIEEHEKDTQDSVSTTVAEKWIQASCLKLKAEFDLYSSIIKNVACTPQRAPGQAKGTEVDNEDKMKLLTFSPSSNP*