AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039320 MtrunA17_Chr1g0203411 90.820 305 13 2 1 300 1 295 0.0 566
Msa0039320 MtrunA17_Chr8g0349261 45.455 319 117 11 1 285 1 296 3.22e-81 247
Msa0039320 MtrunA17_Chr7g0217741 57.297 185 62 4 1 169 1 184 2.15e-66 210
Msa0039320 MtrunA17_Chr1g0187761 76.471 119 28 0 1 119 1 119 3.23e-66 207
Msa0039320 MtrunA17_Chr1g0167691 77.586 116 26 0 1 116 1 116 3.94e-66 207
Msa0039320 MtrunA17_Chr6g0453471 60.234 171 55 4 1 158 1 171 1.97e-64 206
Msa0039320 MtrunA17_Chr4g0039971 74.576 118 30 0 1 118 2 119 2.33e-64 206
Msa0039320 MtrunA17_Chr1g0167661 51.832 191 77 2 1 191 1 176 4.48e-64 202
Msa0039320 MtrunA17_Chr2g0281071 73.504 117 30 1 1 116 1 117 5.67e-63 202
Msa0039320 MtrunA17_Chr4g0048511 73.504 117 30 1 1 116 1 117 1.05e-62 202
Msa0039320 MtrunA17_Chr3g0115821 70.339 118 35 0 1 118 1 118 5.46e-62 199
Msa0039320 MtrunA17_Chr4g0042671 58.140 172 59 2 1 159 1 172 5.79e-62 201
Msa0039320 MtrunA17_Chr7g0247131 46.691 272 101 9 44 288 10 264 2.22e-61 196
Msa0039320 MtrunA17_Chr7g0261281 69.672 122 37 0 1 122 1 122 2.75e-61 196
Msa0039320 MtrunA17_Chr2g0323411 70.588 119 35 0 1 119 1 119 4.44e-61 197
Msa0039320 MtrunA17_Chr7g0274581 66.387 119 40 0 1 119 1 119 1.90e-60 191
Msa0039320 MtrunA17_Chr5g0410961 71.552 116 33 0 1 116 1 116 2.33e-60 195
Msa0039320 MtrunA17_Chr4g0037141 44.770 239 112 6 1 236 1 222 3.05e-60 193
Msa0039320 MtrunA17_Chr4g0068061 69.828 116 35 0 1 116 1 116 1.76e-59 193
Msa0039320 MtrunA17_Chr1g0193371 68.908 119 37 0 1 119 1 119 8.39e-59 192
Msa0039320 MtrunA17_Chr3g0131121 68.966 116 36 0 1 116 1 116 8.79e-59 190
Msa0039320 MtrunA17_Chr4g0060721 66.949 118 39 0 1 118 2 119 1.72e-58 190
Msa0039320 MtrunA17_Chr7g0217221 68.067 119 38 0 1 119 1 119 1.80e-58 188
Msa0039320 MtrunA17_Chr5g0395281 68.644 118 37 0 1 118 1 118 6.91e-58 188
Msa0039320 MtrunA17_Chr3g0092401 66.949 118 39 0 1 118 2 119 2.82e-57 186
Msa0039320 MtrunA17_Chr7g0254411 68.644 118 37 0 1 118 1 118 2.86e-57 187
Msa0039320 MtrunA17_Chr4g0070611 67.521 117 38 0 1 117 1 117 3.20e-57 186
Msa0039320 MtrunA17_Chr8g0385321 67.241 116 38 0 1 116 1 116 5.06e-57 186
Msa0039320 MtrunA17_Chr7g0275911 65.812 117 40 0 1 117 1 117 8.12e-57 184
Msa0039320 MtrunA17_Chr4g0070641 67.521 117 38 0 1 117 1 117 8.17e-57 181
Msa0039320 MtrunA17_Chr1g0193801 50.265 189 88 2 1 186 1 186 8.67e-57 187
Msa0039320 MtrunA17_Chr7g0270891 53.846 169 75 2 1 167 1 168 1.39e-56 186
Msa0039320 MtrunA17_Chr8g0346561 57.241 145 49 1 1 145 1 132 5.46e-56 183
Msa0039320 MtrunA17_Chr6g0453211 69.369 111 34 0 1 111 1 111 1.55e-55 182
Msa0039320 MtrunA17_Chr7g0228891 50.568 176 73 3 1 167 1 171 4.83e-55 179
Msa0039320 MtrunA17_Chr3g0121241 68.750 112 35 0 5 116 35 146 1.22e-54 179
Msa0039320 MtrunA17_Chr3g0103281 65.517 116 40 0 1 116 1 116 4.50e-54 179
Msa0039320 MtrunA17_Chr8g0387421 64.407 118 42 0 1 118 1 118 4.73e-54 178
Msa0039320 MtrunA17_Chr1g0194951 65.517 116 40 0 1 116 1 116 6.46e-54 179
Msa0039320 MtrunA17_Chr5g0435101 62.281 114 43 0 3 116 2 115 6.81e-54 174
Msa0039320 MtrunA17_Chr7g0271241 68.807 109 34 0 1 109 1 109 7.32e-54 179
Msa0039320 MtrunA17_Chr2g0323351 64.655 116 41 0 1 116 1 116 1.35e-53 175
Msa0039320 MtrunA17_Chr2g0330041 64.655 116 41 0 1 116 1 116 1.42e-53 179
Msa0039320 MtrunA17_Chr2g0311221 68.182 110 35 0 2 111 4 113 2.90e-53 177
Msa0039320 MtrunA17_Chr8g0342541 63.793 116 42 0 1 116 1 116 2.98e-53 177
Msa0039320 MtrunA17_Chr1g0151941 54.110 146 62 2 1 145 1 142 4.92e-53 174
Msa0039320 MtrunA17_Chr8g0342521 63.793 116 42 0 1 116 1 116 8.95e-53 176
Msa0039320 MtrunA17_Chr4g0022931 64.103 117 41 1 1 116 1 117 1.35e-52 173
Msa0039320 MtrunA17_Chr2g0309911 65.766 111 38 0 6 116 5 115 1.44e-52 174
Msa0039320 MtrunA17_Chr3g0110351 61.864 118 45 0 1 118 1 118 2.26e-52 174
Msa0039320 MtrunA17_Chr4g0028311 65.812 117 39 1 1 116 1 117 3.73e-52 174
Msa0039320 MtrunA17_Chr4g0058631 63.793 116 42 0 1 116 1 116 4.50e-52 174
Msa0039320 MtrunA17_Chr5g0434571 61.864 118 45 0 1 118 37 154 4.97e-52 174
Msa0039320 MtrunA17_Chr7g0269831 68.103 116 37 0 1 116 1 116 8.09e-52 174
Msa0039320 MtrunA17_Chr4g0022891 46.667 180 79 3 1 163 1 180 9.71e-52 170
Msa0039320 MtrunA17_Chr2g0327351 61.538 130 49 1 1 129 1 130 1.55e-51 172
Msa0039320 MtrunA17_Chr5g0397231 67.273 110 36 0 1 110 1 110 2.99e-51 172
Msa0039320 MtrunA17_Chr4g0057031 63.793 116 42 0 1 116 1 116 3.95e-51 169
Msa0039320 MtrunA17_Chr3g0135311 57.343 143 53 3 1 136 1 142 4.57e-51 171
Msa0039320 MtrunA17_Chr4g0022901 62.393 117 43 1 1 116 1 117 7.76e-51 169
Msa0039320 MtrunA17_Chr3g0117091 62.712 118 44 0 1 118 1 118 9.31e-51 171
Msa0039320 MtrunA17_Chr7g0264641 60.684 117 45 1 1 116 1 117 3.97e-50 167
Msa0039320 MtrunA17_Chr4g0022911 59.829 117 46 1 1 116 1 117 5.37e-50 167
Msa0039320 MtrunA17_Chr6g0452271 61.207 116 45 0 1 116 1 116 7.03e-50 168
Msa0039320 MtrunA17_Chr4g0044421 61.207 116 45 0 1 116 1 116 9.73e-50 163
Msa0039320 MtrunA17_Chr1g0152011 61.538 117 44 1 1 116 1 117 2.34e-49 167
Msa0039320 MtrunA17_Chr5g0400821 48.235 170 79 3 1 169 1 162 2.44e-49 166
Msa0039320 MtrunA17_Chr1g0211161 63.063 111 41 0 6 116 7 117 2.57e-49 163
Msa0039320 MtrunA17_Chr4g0022881 60.526 114 45 0 1 114 1 114 3.08e-49 163
Msa0039320 MtrunA17_Chr1g0203441 64.815 108 38 0 13 120 14 121 6.58e-49 164
Msa0039320 MtrunA17_Chr8g0342481 60.684 117 45 1 1 116 1 117 1.97e-48 166
Msa0039320 MtrunA17_Chr4g0054391 64.545 110 38 1 1 109 1 110 6.99e-48 162
Msa0039320 MtrunA17_Chr5g0417821 63.208 106 39 0 11 116 6 111 9.19e-47 159
Msa0039320 MtrunA17_Chr4g0072751 63.063 111 40 1 1 110 1 111 1.14e-46 160
Msa0039320 MtrunA17_Chr6g0470971 60.714 112 44 0 4 115 6 117 1.22e-46 158
Msa0039320 MtrunA17_Chr2g0328771 60.377 106 42 0 12 117 20 125 1.22e-46 159
Msa0039320 MtrunA17_Chr4g0032401 60.748 107 42 0 12 118 17 123 5.19e-46 158
Msa0039320 MtrunA17_Chr3g0080861 64.220 109 39 0 12 120 37 145 8.73e-46 161
Msa0039320 MtrunA17_Chr6g0487491 58.065 124 43 2 1 115 1 124 1.30e-45 155
Msa0039320 MtrunA17_Chr3g0099131 61.468 109 42 0 12 120 41 149 2.03e-45 161
Msa0039320 MtrunA17_Chr2g0322521 59.200 125 47 1 11 135 28 148 2.14e-45 158
Msa0039320 MtrunA17_Chr3g0088461 61.468 109 42 0 9 117 19 127 2.33e-45 156
Msa0039320 MtrunA17_Chr4g0055981 46.584 161 86 0 9 169 52 212 3.61e-45 153
Msa0039320 MtrunA17_Chr8g0354661 59.829 117 47 0 12 128 37 153 1.03e-44 159
Msa0039320 MtrunA17_Chr7g0228231 60.185 108 43 0 12 119 14 121 4.49e-44 149
Msa0039320 MtrunA17_Chr8g0343831 59.813 107 43 0 12 118 8 114 9.02e-44 150
Msa0039320 MtrunA17_Chr6g0450101 55.833 120 51 1 1 118 1 120 1.69e-43 147
Msa0039320 MtrunA17_Chr1g0209661 58.559 111 46 0 8 118 23 133 3.29e-43 150
Msa0039320 MtrunA17_Chr7g0220341 62.037 108 39 1 11 116 24 131 2.23e-42 147
Msa0039320 MtrunA17_Chr1g0168661 54.783 115 52 0 6 120 15 129 3.15e-42 146
Msa0039320 MtrunA17_Chr1g0186061 59.223 103 42 0 13 115 21 123 4.96e-42 145
Msa0039320 MtrunA17_Chr1g0194291 60.185 108 43 0 11 118 20 127 5.10e-42 145
Msa0039320 MtrunA17_Chr5g0434831 59.434 106 43 0 11 116 6 111 8.14e-42 143
Msa0039320 MtrunA17_Chr4g0042611 69.318 88 27 0 1 88 1 88 2.15e-41 138
Msa0039320 MtrunA17_Chr5g0434911 56.364 110 48 0 7 116 16 125 2.40e-41 144
Msa0039320 MtrunA17_Chr5g0434931 58.491 106 44 0 11 116 34 139 1.01e-40 142
Msa0039320 MtrunA17_Chr1g0194301 56.075 107 47 0 12 118 33 139 1.38e-40 142
Msa0039320 MtrunA17_Chr1g0154031 54.688 128 51 2 12 133 76 202 1.47e-40 145
Msa0039320 MtrunA17_Chr2g0294811 65.217 92 32 0 1 92 1 92 4.09e-40 136
Msa0039320 MtrunA17_Chr1g0180391 57.273 110 45 1 10 117 15 124 5.17e-40 139
Msa0039320 MtrunA17_Chr7g0240821 47.518 141 73 1 16 156 5 144 1.62e-39 138
Msa0039320 MtrunA17_Chr7g0228991 58.491 106 44 0 11 116 28 133 4.39e-39 138
Msa0039320 MtrunA17_Chr5g0434841 56.604 106 46 0 11 116 19 124 2.35e-38 137
Msa0039320 MtrunA17_Chr8g0360111 57.843 102 43 0 11 112 24 125 2.98e-38 135
Msa0039320 MtrunA17_Chr8g0342511 63.218 87 32 0 1 87 1 87 1.13e-37 129
Msa0039320 MtrunA17_Chr2g0293911 58.879 107 44 0 12 118 24 130 1.76e-37 135
Msa0039320 MtrunA17_Chr2g0327821 42.308 156 78 1 12 167 6 149 4.06e-37 132
Msa0039320 MtrunA17_Chr4g0068921 57.944 107 45 0 12 118 24 130 7.24e-37 130
Msa0039320 MtrunA17_Chr1g0192411 51.376 109 53 0 12 120 12 120 1.19e-36 135
Msa0039320 MtrunA17_Chr8g0342531 61.798 89 34 0 1 89 1 89 1.20e-36 129
Msa0039320 MtrunA17_Chr5g0440781 43.200 125 70 1 12 135 12 136 1.94e-34 124
Msa0039320 MtrunA17_Chr8g0342461 60.000 90 35 1 1 89 1 90 2.33e-34 122
Msa0039320 MtrunA17_Chr8g0342471 60.000 90 35 1 1 89 1 90 6.09e-34 120
Msa0039320 MtrunA17_Chr5g0440761 43.200 125 70 1 12 135 12 136 6.33e-34 124
Msa0039320 MtrunA17_Chr5g0441141 35.176 199 115 4 12 207 12 199 6.88e-34 124
Msa0039320 MtrunA17_Chr5g0441131 50.000 104 51 1 12 114 9 112 9.39e-34 122
Msa0039320 MtrunA17_Chr5g0395221 61.364 88 34 0 1 88 1 88 1.37e-33 118
Msa0039320 MtrunA17_Chr4g0030881 46.667 120 57 1 13 125 8 127 5.06e-33 122
Msa0039320 MtrunA17_Chr4g0013361 40.426 141 80 2 8 147 6 143 9.68e-33 122
Msa0039320 MtrunA17_Chr2g0323321 54.348 92 41 1 1 92 1 91 1.34e-32 116
Msa0039320 MtrunA17_Chr3g0099141 56.627 83 36 0 12 94 40 122 1.68e-31 114
Msa0039320 MtrunA17_Chr8g0334881 48.598 107 54 1 12 117 10 116 3.03e-31 119
Msa0039320 MtrunA17_Chr6g0454921 45.385 130 68 2 14 143 15 141 4.17e-31 115
Msa0039320 MtrunA17_Chr5g0401731 52.941 102 47 1 14 115 15 115 3.89e-30 116
Msa0039320 MtrunA17_Chr4g0008551 51.456 103 47 2 14 115 38 138 7.75e-29 113
Msa0039320 MtrunA17_Chr3g0139671 47.664 107 55 1 14 120 85 190 1.59e-28 115
Msa0039320 MtrunA17_Chr3g0139671 30.189 106 72 2 14 118 33 137 5.59e-11 63.2
Msa0039320 MtrunA17_Chr4g0053431 49.020 102 51 1 14 115 5 105 3.53e-28 109
Msa0039320 MtrunA17_Chr3g0133601 47.573 103 53 1 14 116 37 138 5.53e-27 105
Msa0039320 MtrunA17_Chr1g0157731 43.925 107 59 1 14 120 91 196 8.71e-27 110
Msa0039320 MtrunA17_Chr1g0157731 30.189 106 72 2 14 118 39 143 3.31e-11 63.9
Msa0039320 MtrunA17_Chr7g0229131 56.962 79 34 0 44 122 4 82 2.05e-26 102
Msa0039320 MtrunA17_Chr7g0229101 61.429 70 27 0 44 113 4 73 2.75e-26 103
Msa0039320 MtrunA17_Chr6g0480581 46.667 105 54 2 14 118 4 106 7.07e-26 102
Msa0039320 MtrunA17_Chr7g0238631 47.573 103 53 1 14 116 113 214 2.50e-25 105
Msa0039320 MtrunA17_Chr7g0238631 31.132 106 71 2 14 118 61 165 3.21e-11 63.9
Msa0039320 MtrunA17_Chr5g0434901 63.636 66 24 0 48 113 9 74 3.93e-25 97.4
Msa0039320 MtrunA17_Chr5g0429661 45.536 112 55 3 14 124 122 228 4.02e-25 103
Msa0039320 MtrunA17_Chr4g0058991 43.966 116 61 3 12 125 207 320 9.61e-25 103
Msa0039320 MtrunA17_Chr5g0425591 45.882 85 45 1 12 95 9 93 2.80e-24 94.4
Msa0039320 MtrunA17_Chr5g0437321 46.465 99 52 1 14 112 19 116 4.60e-24 99.0
Msa0039320 MtrunA17_Chr5g0417621 45.283 106 55 2 14 118 134 237 8.57e-24 100
Msa0039320 MtrunA17_Chr3g0117511 42.478 113 63 2 14 125 183 294 9.34e-24 100
Msa0039320 MtrunA17_Chr4g0042501 44.340 106 56 2 14 118 105 208 9.89e-24 100
Msa0039320 MtrunA17_Chr5g0397841 45.000 100 54 1 10 109 106 204 4.19e-23 99.0
Msa0039320 MtrunA17_Chr6g0460661 41.121 107 62 1 14 120 16 121 7.83e-23 92.4
Msa0039320 MtrunA17_Chr7g0254261 40.678 118 66 2 14 128 89 205 7.84e-23 96.7
Msa0039320 MtrunA17_Chr3g0125801 45.283 106 55 2 14 118 16 119 3.83e-22 94.0
Msa0039320 MtrunA17_Chr7g0228531 41.593 113 61 3 12 124 218 325 4.46e-22 95.5
Msa0039320 MtrunA17_Chr3g0093811 54.667 75 34 0 44 118 14 88 6.96e-22 92.8
Msa0039320 MtrunA17_Chr6g0453751 44.681 94 43 2 11 95 19 112 3.33e-21 87.4
Msa0039320 MtrunA17_Chr7g0238651 41.667 108 61 1 14 119 7 114 4.03e-21 92.0
Msa0039320 MtrunA17_Chr6g0460671 39.252 107 64 1 14 120 99 204 8.16e-21 91.3
Msa0039320 MtrunA17_Chr7g0228401 46.512 86 45 1 25 110 290 374 2.94e-19 87.8
Msa0039320 MtrunA17_Chr1g0177901 45.349 86 46 1 25 110 5 89 1.96e-18 82.0
Msa0039320 MtrunA17_Chr7g0228481 38.384 99 59 2 12 110 218 314 1.14e-17 82.8
Msa0039320 MtrunA17_Chr7g0233061 36.522 115 57 4 14 122 180 284 5.74e-17 80.1
Msa0039320 MtrunA17_Chr7g0247141 60.417 48 18 1 1 47 1 48 9.78e-17 73.2
Msa0039320 MtrunA17_Chr5g0416341 37.273 110 65 2 8 117 23 128 1.38e-16 79.7
Msa0039320 MtrunA17_Chr8g0362231 36.283 113 68 2 8 120 19 127 3.01e-16 78.6
Msa0039320 MtrunA17_Chr1g0193901 42.529 87 48 2 12 96 11 97 1.38e-14 68.9
Msa0039320 MtrunA17_Chr1g0193891 42.529 87 48 2 12 96 11 97 1.38e-14 68.9
Msa0039320 MtrunA17_Chr1g0193871 42.529 87 48 2 12 96 11 97 1.38e-14 68.9
Msa0039320 MtrunA17_Chr1g0193881 42.529 87 48 2 12 96 11 97 1.38e-14 68.9
Msa0039320 MtrunA17_Chr5g0434871 60.465 43 17 0 74 116 2 44 8.81e-14 65.5
Msa0039320 MtrunA17_Chr3g0104491 38.961 77 42 2 53 125 1 76 7.26e-12 64.7
Msa0039320 MtrunA17_Chr5g0434891 58.696 46 19 0 78 123 2 47 1.18e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039320 AT3G61250.1 50.165 303 107 9 1 285 1 277 1.07e-83 254
Msa0039320 AT3G01140.2 60.588 170 56 2 1 159 1 170 3.07e-67 213
Msa0039320 AT2G31180.1 75.833 120 29 0 1 120 1 120 1.29e-66 209
Msa0039320 AT4G05100.1 74.359 117 29 1 1 116 1 117 1.04e-64 206
Msa0039320 AT5G15310.1 59.064 171 59 2 1 160 1 171 1.06e-64 206
Msa0039320 AT5G15310.2 59.064 171 59 2 1 160 1 171 1.08e-64 206
Msa0039320 AT5G15310.4 59.064 171 59 2 1 160 1 171 1.11e-64 204
Msa0039320 AT3G01140.1 60.000 170 57 2 1 159 44 213 1.13e-64 208
Msa0039320 AT4G21440.1 73.276 116 31 0 1 116 1 116 4.47e-64 206
Msa0039320 AT3G23250.1 75.000 116 29 0 1 116 1 116 5.88e-64 203
Msa0039320 AT4G28110.1 71.429 119 34 0 1 119 1 119 1.59e-63 202
Msa0039320 AT5G16770.4 71.186 118 34 0 1 118 1 118 2.76e-63 202
Msa0039320 AT5G16770.3 71.186 118 34 0 1 118 1 118 2.76e-63 202
Msa0039320 AT5G16770.1 71.186 118 34 0 1 118 1 118 6.58e-63 202
Msa0039320 AT5G16770.2 71.186 118 34 0 1 118 1 118 6.58e-63 202
Msa0039320 AT3G02940.2 70.339 118 35 0 1 118 1 118 7.73e-63 201
Msa0039320 AT3G02940.1 70.339 118 35 0 1 118 1 118 1.46e-62 201
Msa0039320 AT3G02940.3 70.339 118 35 0 1 118 1 118 1.46e-62 201
Msa0039320 AT1G34670.1 70.339 118 35 0 1 118 1 118 3.09e-61 199
Msa0039320 AT1G35515.1 50.282 177 86 1 1 175 1 177 4.62e-61 193
Msa0039320 AT1G06180.1 72.269 119 33 0 1 119 1 119 6.05e-61 194
Msa0039320 AT5G62470.2 70.339 118 35 0 1 118 1 118 3.93e-60 195
Msa0039320 AT4G09460.1 68.966 116 36 0 1 116 1 116 7.35e-60 191
Msa0039320 AT1G79180.1 70.339 118 35 0 2 119 4 121 1.50e-59 192
Msa0039320 AT2G16720.1 68.966 116 36 0 1 116 1 116 1.58e-59 191
Msa0039320 AT5G60890.1 68.644 118 37 0 1 118 1 118 2.51e-59 191
Msa0039320 AT5G10280.1 67.797 118 38 0 1 118 1 118 4.54e-59 192
Msa0039320 AT5G62470.1 70.339 118 34 1 1 118 1 117 9.37e-59 192
Msa0039320 AT3G47600.1 68.644 118 37 0 1 118 1 118 1.28e-58 191
Msa0039320 AT4G38620.1 68.966 116 36 0 1 116 1 116 1.38e-58 189
Msa0039320 AT1G22640.1 68.103 116 37 0 1 116 1 116 1.68e-58 188
Msa0039320 AT1G74650.1 70.690 116 34 0 1 116 1 116 3.24e-58 190
Msa0039320 AT1G08810.1 67.227 119 39 0 1 119 1 119 7.56e-58 187
Msa0039320 AT5G65230.1 66.949 118 39 0 1 118 1 118 2.01e-57 187
Msa0039320 AT5G49330.1 68.966 116 36 0 1 116 1 116 2.77e-57 188
Msa0039320 AT4G17785.2 65.546 119 40 1 1 118 1 119 2.87e-57 188
Msa0039320 AT3G28910.1 65.323 124 43 0 1 124 1 124 3.92e-57 187
Msa0039320 AT4G17785.1 65.546 119 40 1 1 118 1 119 4.02e-57 188
Msa0039320 AT1G56160.1 68.696 115 36 0 2 116 4 118 5.11e-57 186
Msa0039320 AT1G18570.1 69.231 117 35 1 1 116 1 117 8.95e-57 187
Msa0039320 AT1G16490.1 67.826 115 37 0 2 116 4 118 9.31e-57 184
Msa0039320 AT3G13890.2 66.379 116 39 0 1 116 1 116 2.03e-56 186
Msa0039320 AT4G34990.1 66.379 116 39 0 1 116 1 116 2.25e-56 183
Msa0039320 AT3G62610.1 65.574 122 42 0 1 122 1 122 3.68e-56 185
Msa0039320 AT3G13540.1 66.949 118 38 1 4 120 15 132 5.71e-56 181
Msa0039320 AT4G01680.3 66.667 117 39 0 1 117 1 117 7.55e-56 181
Msa0039320 AT5G54230.1 71.552 116 33 0 1 116 1 116 7.92e-56 183
Msa0039320 AT2G47460.1 64.754 122 43 0 1 122 1 122 1.91e-55 184
Msa0039320 AT5G26660.1 64.407 118 42 0 1 118 1 118 2.22e-55 183
Msa0039320 AT4G01680.1 66.667 117 39 0 1 117 1 117 4.91e-55 182
Msa0039320 AT3G12820.1 69.298 114 35 0 3 116 5 118 7.98e-55 178
Msa0039320 AT5G61420.2 64.407 118 42 0 1 118 1 118 2.83e-54 181
Msa0039320 AT1G57560.1 63.793 116 42 0 1 116 1 116 3.86e-54 179
Msa0039320 AT5G16600.1 64.407 118 42 0 1 118 1 118 4.27e-54 179
Msa0039320 AT1G57560.2 63.793 116 42 0 1 116 1 116 5.20e-54 177
Msa0039320 AT5G56110.1 53.642 151 65 1 1 146 1 151 9.92e-54 178
Msa0039320 AT1G09540.1 62.712 118 44 0 1 118 1 118 1.45e-53 179
Msa0039320 AT1G63910.1 64.407 118 42 0 1 118 1 118 2.22e-53 178
Msa0039320 AT3G13890.1 61.600 125 39 1 1 116 1 125 2.81e-53 178
Msa0039320 AT5G07690.1 65.789 114 39 0 1 114 1 114 3.03e-53 177
Msa0039320 AT1G74080.1 64.912 114 40 0 1 114 1 114 3.29e-53 177
Msa0039320 AT4G12350.1 43.842 203 90 2 1 179 1 203 4.70e-53 175
Msa0039320 AT1G79180.2 54.967 151 35 1 2 119 4 154 6.34e-53 176
Msa0039320 AT3G12720.1 66.667 111 37 0 6 116 16 126 6.80e-53 175
Msa0039320 AT4G22680.1 63.793 116 42 0 1 116 1 116 2.35e-52 172
Msa0039320 AT5G07700.1 64.655 116 41 0 1 116 1 116 3.01e-52 174
Msa0039320 AT5G07700.2 64.655 116 41 0 1 116 1 116 3.01e-52 174
Msa0039320 AT1G66230.1 61.017 118 46 0 1 118 1 118 3.13e-52 173
Msa0039320 AT4G01680.2 60.465 129 39 1 1 117 1 129 1.38e-51 173
Msa0039320 AT1G74430.1 65.517 116 40 0 1 116 1 116 1.38e-51 171
Msa0039320 AT5G57620.1 63.248 117 42 1 1 116 1 117 5.99e-51 171
Msa0039320 AT5G14340.1 61.864 118 45 0 1 118 13 130 7.34e-51 169
Msa0039320 AT5G23000.1 63.248 117 42 1 1 116 1 117 3.12e-50 169
Msa0039320 AT5G65790.1 59.677 124 49 1 1 123 1 124 1.13e-49 169
Msa0039320 AT2G36890.1 61.983 121 45 1 1 120 1 121 2.34e-49 166
Msa0039320 AT4G37780.1 60.684 117 45 1 1 116 1 117 2.37e-49 166
Msa0039320 AT3G49690.1 59.843 127 46 2 1 122 1 127 2.76e-49 166
Msa0039320 AT2G36890.2 61.983 121 45 1 1 120 42 162 3.41e-49 167
Msa0039320 AT1G18710.1 62.931 116 43 0 1 116 1 116 6.26e-49 164
Msa0039320 AT5G06100.1 61.261 111 43 0 10 120 30 140 1.80e-48 167
Msa0039320 AT5G06100.5 61.261 111 43 0 10 120 30 140 8.36e-48 167
Msa0039320 AT5G06100.2 61.261 111 43 0 10 120 30 140 8.36e-48 167
Msa0039320 AT5G06100.3 61.261 111 43 0 10 120 30 140 8.36e-48 167
Msa0039320 AT5G06100.4 61.261 111 43 0 10 120 30 140 8.36e-48 167
Msa0039320 AT5G62320.1 58.197 122 44 1 2 116 3 124 1.38e-47 160
Msa0039320 AT5G35550.1 62.712 118 39 1 12 124 14 131 1.70e-47 160
Msa0039320 AT2G32460.1 62.832 113 42 0 8 120 14 126 3.84e-47 165
Msa0039320 AT2G32460.2 63.636 110 40 0 11 120 5 114 9.21e-47 164
Msa0039320 AT5G55020.1 61.017 118 46 0 12 129 26 143 1.26e-46 164
Msa0039320 AT5G40330.1 58.716 109 45 0 8 116 8 116 3.04e-46 155
Msa0039320 AT5G14750.1 61.538 104 40 0 13 116 17 120 4.36e-46 154
Msa0039320 AT5G12870.1 60.748 107 42 0 12 118 18 124 2.80e-45 155
Msa0039320 AT3G08500.1 60.550 109 43 0 9 117 27 135 4.19e-45 156
Msa0039320 AT3G28470.1 58.182 110 46 0 1 110 1 110 8.49e-45 155
Msa0039320 AT3G30210.1 47.097 155 71 2 11 156 26 178 1.16e-44 153
Msa0039320 AT4G26930.1 57.600 125 48 1 12 136 19 138 1.45e-44 156
Msa0039320 AT3G48920.1 60.185 108 43 0 9 116 15 122 1.54e-44 152
Msa0039320 AT3G11440.2 58.716 109 45 0 12 120 41 149 1.60e-44 157
Msa0039320 AT3G27920.1 56.881 109 47 0 8 116 10 118 8.12e-44 149
Msa0039320 AT3G11440.3 55.462 119 53 0 12 130 41 159 8.56e-44 157
Msa0039320 AT3G11440.4 55.462 119 53 0 12 130 41 159 8.56e-44 157
Msa0039320 AT3G11440.1 55.462 119 53 0 12 130 41 159 8.56e-44 157
Msa0039320 AT4G25560.1 59.130 115 45 1 1 115 1 113 2.94e-43 150
Msa0039320 AT3G27810.1 59.259 108 44 0 12 119 20 127 3.55e-43 148
Msa0039320 AT5G52600.1 61.538 104 40 0 12 115 12 115 5.41e-43 146
Msa0039320 AT3G24310.1 60.748 107 42 0 11 117 17 123 7.26e-43 148
Msa0039320 AT3G01530.1 50.725 138 61 2 8 141 21 155 7.75e-43 146
Msa0039320 AT5G52260.1 60.870 115 45 0 1 115 1 115 8.76e-43 148
Msa0039320 AT5G40350.1 59.259 108 44 0 12 119 17 124 8.85e-43 146
Msa0039320 AT2G26960.1 56.250 112 49 0 9 120 17 128 7.88e-42 149
Msa0039320 AT4G13480.1 58.879 107 44 0 13 119 7 113 1.66e-41 144
Msa0039320 AT1G48000.1 57.547 106 45 0 12 117 32 137 1.88e-39 139
Msa0039320 AT1G66370.1 53.043 115 50 1 1 115 1 111 2.47e-39 138
Msa0039320 AT3G46130.1 50.847 118 58 0 8 125 5 122 6.51e-39 137
Msa0039320 AT2G47190.1 52.727 110 52 0 8 117 16 125 1.41e-38 137
Msa0039320 AT1G25340.1 55.660 106 47 0 13 118 19 124 1.50e-38 137
Msa0039320 AT5G59780.3 52.212 113 54 0 13 125 9 121 1.74e-38 136
Msa0039320 AT1G68320.1 57.009 107 46 0 12 118 19 125 1.81e-38 137
Msa0039320 AT1G66380.1 58.095 105 44 0 11 115 7 111 4.68e-37 129
Msa0039320 AT3G53200.1 57.692 104 44 0 12 115 9 112 8.66e-37 131
Msa0039320 AT1G56650.1 58.095 105 44 0 11 115 7 111 1.64e-36 131
Msa0039320 AT5G49620.1 56.757 111 48 0 8 118 22 132 3.87e-36 132
Msa0039320 AT1G66390.1 58.095 105 44 0 11 115 7 111 7.56e-36 129
Msa0039320 AT3G06490.1 57.944 107 45 0 12 118 19 125 8.87e-36 131
Msa0039320 AT3G12820.2 75.714 70 17 0 47 116 1 70 2.59e-34 124
Msa0039320 AT1G25340.2 52.830 106 45 1 13 118 19 119 3.07e-34 126
Msa0039320 AT1G25340.3 52.830 106 45 1 13 118 19 119 3.79e-34 126
Msa0039320 AT2G26950.1 46.721 122 60 2 9 130 13 129 4.57e-34 128
Msa0039320 AT5G26660.2 71.622 74 21 0 45 118 14 87 1.09e-33 125
Msa0039320 AT3G47600.2 72.973 74 20 0 45 118 39 112 1.90e-33 125
Msa0039320 AT5G14750.3 65.385 78 24 1 39 116 12 86 6.81e-33 119
Msa0039320 AT5G49620.2 50.400 125 48 1 8 118 22 146 1.58e-32 122
Msa0039320 AT3G60460.1 45.536 112 60 1 7 117 6 117 4.30e-32 121
Msa0039320 AT5G35550.2 64.706 85 25 1 45 124 50 134 5.16e-32 120
Msa0039320 AT3G46130.3 57.955 88 37 0 38 125 3 90 7.81e-31 115
Msa0039320 AT5G59780.2 60.494 81 32 0 45 125 20 100 1.32e-30 115
Msa0039320 AT3G46130.4 60.494 81 32 0 45 125 20 100 2.24e-30 115
Msa0039320 AT3G27810.2 61.039 77 30 0 43 119 2 78 4.55e-30 112
Msa0039320 AT5G40350.2 62.667 75 28 0 45 119 5 79 4.12e-29 109
Msa0039320 AT3G53200.2 66.197 71 24 0 45 115 9 79 1.04e-28 109
Msa0039320 AT5G02320.3 48.544 103 52 1 14 116 67 168 1.12e-27 112
Msa0039320 AT5G02320.3 33.019 106 69 2 14 118 15 119 1.08e-12 68.6
Msa0039320 AT5G02320.1 48.544 103 52 1 14 116 127 228 1.14e-27 112
Msa0039320 AT5G02320.1 33.019 106 69 2 14 118 75 179 8.99e-13 68.9
Msa0039320 AT5G02320.2 48.544 103 52 1 14 116 127 228 1.14e-27 112
Msa0039320 AT5G02320.2 33.019 106 69 2 14 118 75 179 8.99e-13 68.9
Msa0039320 AT4G32730.5 45.631 103 55 1 14 116 87 188 3.69e-27 111
Msa0039320 AT4G32730.5 30.841 107 72 2 14 119 35 140 7.88e-12 66.2
Msa0039320 AT4G32730.4 45.631 103 55 1 14 116 87 188 3.69e-27 111
Msa0039320 AT4G32730.4 30.841 107 72 2 14 119 35 140 7.88e-12 66.2
Msa0039320 AT4G32730.3 45.631 103 55 1 14 116 87 188 3.69e-27 111
Msa0039320 AT4G32730.3 30.841 107 72 2 14 119 35 140 7.88e-12 66.2
Msa0039320 AT4G32730.2 45.631 103 55 1 14 116 87 188 3.69e-27 111
Msa0039320 AT4G32730.2 30.841 107 72 2 14 119 35 140 7.88e-12 66.2
Msa0039320 AT4G32730.1 45.631 103 55 1 14 116 87 188 4.58e-27 111
Msa0039320 AT4G32730.1 30.841 107 72 2 14 119 35 140 8.74e-12 66.2
Msa0039320 AT3G27785.1 47.458 118 55 3 8 123 183 295 5.52e-27 109
Msa0039320 AT2G23290.1 50.980 102 49 1 14 115 13 113 5.91e-27 107
Msa0039320 AT4G37260.1 49.020 102 51 1 14 115 13 113 1.76e-26 106
Msa0039320 AT2G39880.1 48.544 103 50 2 14 115 50 150 3.10e-26 106
Msa0039320 AT3G09230.1 48.113 106 46 2 14 115 55 155 3.16e-26 107
Msa0039320 AT3G23250.2 73.333 60 16 0 58 117 1 60 7.80e-26 102
Msa0039320 AT1G73410.1 47.009 117 56 3 14 129 6 117 8.63e-26 102
Msa0039320 AT5G17800.1 43.636 110 61 1 14 123 93 201 1.10e-25 104
Msa0039320 AT1G69560.1 45.045 111 58 2 9 118 102 210 1.31e-25 104
Msa0039320 AT4G33450.1 41.525 118 63 2 3 120 13 124 1.31e-25 102
Msa0039320 AT1G69560.2 45.045 111 58 2 9 118 118 226 1.49e-25 104
Msa0039320 AT5G67300.1 48.039 102 52 1 14 115 6 106 1.91e-25 103
Msa0039320 AT1G73410.2 47.009 117 56 3 14 129 6 117 2.76e-25 100
Msa0039320 AT5G40360.1 38.235 136 82 2 1 136 145 278 2.95e-25 103
Msa0039320 AT4G18770.1 42.149 121 64 3 8 125 211 328 3.72e-25 104
Msa0039320 AT1G26780.1 34.568 162 97 4 14 173 98 252 4.01e-25 102
Msa0039320 AT3G09370.2 47.059 102 53 1 14 115 135 235 4.55e-25 105
Msa0039320 AT3G09370.1 47.059 102 53 1 14 115 130 230 4.79e-25 104
Msa0039320 AT3G09370.3 47.170 106 47 2 14 115 143 243 6.13e-25 104
Msa0039320 AT1G17950.1 30.638 235 149 6 14 245 5 228 8.24e-25 100
Msa0039320 AT1G26780.2 34.568 162 97 4 14 173 98 252 9.39e-25 102
Msa0039320 AT1G66380.3 62.500 72 27 0 44 115 7 78 9.87e-25 96.3
Msa0039320 AT5G11510.3 46.667 105 51 2 14 116 81 182 1.07e-24 104
Msa0039320 AT5G11510.3 32.075 106 70 2 14 118 29 133 3.92e-11 64.3
Msa0039320 AT5G11510.1 46.667 105 51 2 14 116 81 182 1.07e-24 104
Msa0039320 AT5G11510.1 32.075 106 70 2 14 118 29 133 3.92e-11 64.3
Msa0039320 AT5G11510.4 46.667 105 51 2 14 116 81 182 1.07e-24 104
Msa0039320 AT5G11510.4 32.075 106 70 2 14 118 29 133 3.92e-11 64.3
Msa0039320 AT5G11510.5 45.631 103 55 1 14 116 81 182 1.23e-24 104
Msa0039320 AT5G11510.5 32.075 106 70 2 14 118 29 133 3.07e-11 64.3
Msa0039320 AT5G11510.2 45.631 103 55 1 14 116 81 182 1.30e-24 104
Msa0039320 AT5G11510.2 32.075 106 70 2 14 118 29 133 3.28e-11 64.3
Msa0039320 AT5G58850.1 41.860 129 70 3 14 141 105 229 1.84e-24 102
Msa0039320 AT5G11050.1 34.483 174 92 6 12 171 103 268 3.00e-24 102
Msa0039320 AT3G55730.1 47.573 103 51 2 14 115 56 156 4.17e-24 101
Msa0039320 AT3G50060.1 46.078 102 54 1 14 115 6 106 4.47e-24 99.8
Msa0039320 AT1G22640.3 66.102 59 20 0 58 116 1 59 5.03e-24 97.1
Msa0039320 AT5G14750.4 62.712 59 22 0 58 116 1 59 6.08e-23 92.4
Msa0039320 AT5G14750.2 62.712 59 22 0 58 116 1 59 6.08e-23 92.4
Msa0039320 AT1G66380.2 54.430 79 36 0 11 89 7 85 9.16e-22 88.6
Msa0039320 AT3G29020.1 40.000 105 62 1 14 118 65 168 1.33e-21 91.7
Msa0039320 AT1G18960.1 42.857 105 57 2 14 118 10 111 1.74e-21 92.8
Msa0039320 AT3G29020.2 40.000 105 62 1 14 118 67 170 2.66e-21 92.0
Msa0039320 AT2G25230.1 41.441 111 61 3 8 117 20 127 7.07e-21 89.7
Msa0039320 AT4G00540.2 42.727 110 59 2 12 118 101 209 1.51e-20 91.3
Msa0039320 AT1G71030.2 53.030 66 31 0 51 116 5 70 2.07e-20 87.0
Msa0039320 AT4G00540.1 42.727 110 59 2 12 118 99 207 2.52e-20 90.9
Msa0039320 AT1G71030.1 53.030 66 31 0 51 116 19 84 2.76e-20 87.0
Msa0039320 AT2G37630.1 39.815 108 63 1 13 118 3 110 2.69e-19 87.4
Msa0039320 AT2G02820.3 33.987 153 80 5 8 143 27 175 1.23e-17 82.4
Msa0039320 AT2G02820.1 33.987 153 80 5 8 143 27 175 4.13e-17 81.6
Msa0039320 AT2G02820.2 33.987 153 80 5 8 143 27 175 5.89e-17 81.3
Msa0039320 AT5G40430.1 36.697 109 66 3 9 117 49 154 6.34e-17 79.0
Msa0039320 AT5G39700.1 34.615 104 67 1 15 118 57 159 4.16e-16 75.5
Msa0039320 AT1G14350.2 34.375 128 74 3 8 135 22 139 1.28e-15 77.0
Msa0039320 AT1G14350.1 34.375 128 74 3 8 135 22 139 1.28e-15 77.0
Msa0039320 AT5G59780.1 53.571 56 26 0 70 125 1 56 2.13e-15 73.2
Msa0039320 AT3G46130.2 53.571 56 26 0 70 125 1 56 4.05e-15 72.8
Msa0039320 AT3G28910.2 62.000 50 19 0 78 127 2 51 1.74e-14 72.0
Msa0039320 AT1G74650.3 76.923 39 9 0 78 116 2 40 2.82e-14 71.6
Msa0039320 AT4G25560.2 67.442 43 14 0 73 115 5 47 4.11e-14 70.5
Msa0039320 AT5G15310.3 46.429 84 34 2 88 160 9 92 2.47e-12 65.9
Msa0039320 AT5G61420.1 71.053 38 11 0 81 118 2 39 4.86e-12 65.5
Msa0039320 AT4G28110.2 75.000 32 8 0 88 119 4 35 5.57e-11 61.2

Find 70 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGGACACGTTTCTTTAAA+TGG 0.094066 1_1:-68863706 None:intergenic
GCTTTGGTGTCGACACTTTC+AGG 0.182498 1_1:-68864163 None:intergenic
AAGCTTCAGTTTGTAGTTAC+TGG 0.214754 1_1:-68864219 None:intergenic
ATCACTATCATCATCGAAAT+TGG 0.245454 1_1:+68864091 Msa0039320:CDS
GAGTCCACTTTGCTTAATTC+AGG 0.272638 1_1:+68863954 Msa0039320:CDS
TGAAGATGTTGACGTGATTC+AGG 0.278646 1_1:+68864187 Msa0039320:CDS
GATAGATCTGGTTCAGATTC+AGG 0.282629 1_1:+68864248 Msa0039320:CDS
TTGTTGTGAATTTATTACTA+TGG 0.292839 1_1:+68862082 Msa0039320:five_prime_UTR
CTGCGTATGCCTGATGAAAT+AGG 0.293386 1_1:+68864317 Msa0039320:CDS
ATCTCATTGTCTGTTCTTCC+TGG 0.294103 1_1:-68863665 None:intergenic
CTGATTACTTTCTTCAACTT+TGG 0.298456 1_1:+68863997 Msa0039320:CDS
GCCTGATGAAATAGGATTCC+TGG 0.344813 1_1:+68864325 Msa0039320:CDS
ACTAAAGCTTCATCTTCTTC+AGG 0.351058 1_1:-68862187 None:intergenic
TTGACAGTACCTGCATGTTT+AGG 0.374019 1_1:-68862253 None:intergenic
AATTTCTTGAATCTCCTTGA+TGG 0.383750 1_1:+68864359 Msa0039320:CDS
CCGGACACGTTTCTTTAAAT+GGG 0.388694 1_1:-68863705 None:intergenic
ACAATGAGATTAAGAACTAT+TGG 0.389201 1_1:+68863678 Msa0039320:CDS
TTAGACTGGGCATTCCTATC+AGG 0.389920 1_1:-68863761 None:intergenic
GCGGCAAAAGTTGCCGGCTT+CGG 0.411394 1_1:+68863373 Msa0039320:CDS
TAAGATGCGGCAAAAGTTGC+CGG 0.416041 1_1:+68863367 Msa0039320:CDS
CAACTTTGGCATTCTGATGT+TGG 0.417033 1_1:+68864011 Msa0039320:CDS
TGGGCCATGTGGCGTGTAGA+AGG 0.420239 1_1:-68863788 None:intergenic
CAAAGTTGAAGAAAGTAATC+AGG 0.443367 1_1:-68863996 None:intergenic
ATGTTCAGATGTCTCATTGC+AGG 0.446382 1_1:+68864118 Msa0039320:CDS
ATCCATGTCTCCTTCCTGAT+AGG 0.449112 1_1:+68863747 Msa0039320:CDS
TTCATGCCATGCTTGGCAAC+AGG 0.452030 1_1:+68863469 Msa0039320:CDS
CCCAGGAATCCTATTTCATC+AGG 0.453232 1_1:-68864326 None:intergenic
ACGTCAACATCTTCAAGCTT+TGG 0.459604 1_1:-68864179 None:intergenic
ATTCAACTTCATGCCATGCT+TGG 0.464130 1_1:+68863462 Msa0039320:CDS
GTGTAGAAGGAGAATTAGAC+TGG 0.475010 1_1:-68863775 None:intergenic
GATAGTTTATCCACCGAAGC+CGG 0.479363 1_1:-68863386 None:intergenic
AACGTGTCCGGCAGTCGCTA+AGG 0.484382 1_1:+68863717 Msa0039320:CDS
GTGAATTTATTACTATGGTT+TGG 0.487429 1_1:+68862087 Msa0039320:five_prime_UTR
ACAAACATGGCCATGGGAGT+TGG 0.494826 1_1:+68862221 Msa0039320:CDS
AATGAGCCACGCTTGATGCC+AGG 0.516151 1_1:-68863414 None:intergenic
AAGCTTGAAGATGATAGATC+TGG 0.524702 1_1:+68864236 Msa0039320:CDS
GCAAAAGTTGCCGGCTTCGG+TGG 0.528545 1_1:+68863376 Msa0039320:CDS
CCTGATGAAATAGGATTCCT+GGG 0.529222 1_1:+68864326 Msa0039320:CDS
AGCAGAGACGAGGCTGTCGT+TGG 0.533698 1_1:+68863932 Msa0039320:CDS
TGGATAAACTATCTCCGTCC+TGG 0.539879 1_1:+68863396 Msa0039320:CDS
CCCATTTAAAGAAACGTGTC+CGG 0.543989 1_1:+68863705 Msa0039320:CDS
GCTATAGCAGCTCAACTACC+AGG 0.548333 1_1:+68863647 Msa0039320:CDS
TACATCAACAAACATGGCCA+TGG 0.548377 1_1:+68862214 Msa0039320:CDS
ACCCCATGTTTCTCACAACA+AGG 0.549162 1_1:-68862145 None:intergenic
ACGTGTCCGGCAGTCGCTAA+GGG 0.552877 1_1:+68863718 Msa0039320:CDS
CTTAGTCACATCTACCATCA+AGG 0.561878 1_1:-68864373 None:intergenic
AGAAATTGTCAGTATGTCCC+AGG 0.567136 1_1:-68864343 None:intergenic
ATGGGGTGAAAAGAGGAGCT+TGG 0.568068 1_1:+68862161 Msa0039320:CDS
CCCATGTTTCTCACAACAAG+GGG 0.570733 1_1:-68862143 None:intergenic
GAAGCGTACGCCAACTCCCA+TGG 0.573185 1_1:-68862231 None:intergenic
TTCCTATCAGGAAGGAGACA+TGG 0.573818 1_1:-68863749 None:intergenic
GTTGGAGAGAAATTTCGAGC+AGG 0.578155 1_1:+68864029 Msa0039320:CDS
GAGAAACATGGGGTGAAAAG+AGG 0.581259 1_1:+68862154 Msa0039320:CDS
CCCCTTGTTGTGAGAAACAT+GGG 0.582114 1_1:+68862143 Msa0039320:CDS
ACTATGGTTTGGTAATGAGT+TGG 0.582595 1_1:+68862098 Msa0039320:five_prime_UTR
GAGGTACCTGTTGCCAAGCA+TGG 0.589470 1_1:-68863475 None:intergenic
TTCTCCTTCTACACGCCACA+TGG 0.594285 1_1:+68863784 Msa0039320:CDS
CTCCGTCCTGGCATCAAGCG+TGG 0.596733 1_1:+68863408 Msa0039320:CDS
GCCCCTTGTTGTGAGAAACA+TGG 0.603365 1_1:+68862142 Msa0039320:CDS
CCCCATGTTTCTCACAACAA+GGG 0.611520 1_1:-68862144 None:intergenic
CGTACGCTTCCTAAACATGC+AGG 0.612439 1_1:+68862244 Msa0039320:CDS
AGAGCCTGAATTAAGCAAAG+TGG 0.615810 1_1:-68863958 None:intergenic
TTTCATCAGGCATACGCAGT+AGG 0.616891 1_1:-68864313 None:intergenic
ACATCAACAAACATGGCCAT+GGG 0.633448 1_1:+68862215 Msa0039320:CDS
AGCCACGCTTGATGCCAGGA+CGG 0.639664 1_1:-68863410 None:intergenic
GTTGACTACATCAACAAACA+TGG 0.659740 1_1:+68862208 Msa0039320:CDS
ACTGGGCATTCCTATCAGGA+AGG 0.663389 1_1:-68863757 None:intergenic
CAAGTAGGTCTCCTAAGATG+CGG 0.667276 1_1:+68863354 Msa0039320:intron
TGTAGAAGGAGAATTAGACT+GGG 0.703666 1_1:-68863774 None:intergenic
CCCTTGTTGTGAGAAACATG+GGG 0.801692 1_1:+68862144 Msa0039320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAGATTCTTAATACA+CGG - chr1_1:68862531-68862550 None:intergenic 15.0%
!!! AATTTTAGATTCTTAATACA+CGG - chr1_1:68862531-68862550 None:intergenic 15.0%
!! TTGTTGTGAATTTATTACTA+TGG + chr1_1:68862082-68862101 Msa0039320:five_prime_UTR 20.0%
!!! CAAAACAAAACTTTTACAAT+AGG - chr1_1:68862944-68862963 None:intergenic 20.0%
!! TTGTTGTGAATTTATTACTA+TGG + chr1_1:68862082-68862101 Msa0039320:five_prime_UTR 20.0%
!!! CAAAACAAAACTTTTACAAT+AGG - chr1_1:68862944-68862963 None:intergenic 20.0%
! GTGAATTTATTACTATGGTT+TGG + chr1_1:68862087-68862106 Msa0039320:five_prime_UTR 25.0%
!!! TTTGGAATATTTTGAAGCTA+AGG + chr1_1:68862357-68862376 Msa0039320:intron 25.0%
! CTAAGGAAGAATATTTAGTA+TGG + chr1_1:68862374-68862393 Msa0039320:intron 25.0%
!!! TTAGTTTTCATACTCTTCAA+GGG + chr1_1:68862442-68862461 Msa0039320:intron 25.0%
!!! TCAAGGGTTTTGAATATTAA+CGG + chr1_1:68862458-68862477 Msa0039320:intron 25.0%
! CTTGTTTAGCAGAAAAATAT+TGG - chr1_1:68862562-68862581 None:intergenic 25.0%
! CTATAAGCTTATTACTTTGA+AGG + chr1_1:68862613-68862632 Msa0039320:intron 25.0%
! TCATCATGAATAAAACCTTA+TGG + chr1_1:68862671-68862690 Msa0039320:intron 25.0%
! TAATAATAACCTATTGAGAG+AGG - chr1_1:68862871-68862890 None:intergenic 25.0%
!! AGTTATACTTTTCCTTATCT+CGG - chr1_1:68863152-68863171 None:intergenic 25.0%
! TTATATTGATCTGACACTTA+TGG + chr1_1:68863215-68863234 Msa0039320:intron 25.0%
! TATGTATGTTTACTACAAGT+AGG + chr1_1:68863339-68863358 Msa0039320:intron 25.0%
! ACAATGAGATTAAGAACTAT+TGG + chr1_1:68863678-68863697 Msa0039320:CDS 25.0%
! GTGAATTTATTACTATGGTT+TGG + chr1_1:68862087-68862106 Msa0039320:five_prime_UTR 25.0%
!!! TTTGGAATATTTTGAAGCTA+AGG + chr1_1:68862357-68862376 Msa0039320:intron 25.0%
! CTAAGGAAGAATATTTAGTA+TGG + chr1_1:68862374-68862393 Msa0039320:intron 25.0%
!!! TTAGTTTTCATACTCTTCAA+GGG + chr1_1:68862442-68862461 Msa0039320:intron 25.0%
!!! TCAAGGGTTTTGAATATTAA+CGG + chr1_1:68862458-68862477 Msa0039320:intron 25.0%
! CTTGTTTAGCAGAAAAATAT+TGG - chr1_1:68862562-68862581 None:intergenic 25.0%
! CTATAAGCTTATTACTTTGA+AGG + chr1_1:68862613-68862632 Msa0039320:intron 25.0%
! TCATCATGAATAAAACCTTA+TGG + chr1_1:68862671-68862690 Msa0039320:intron 25.0%
! TAATAATAACCTATTGAGAG+AGG - chr1_1:68862871-68862890 None:intergenic 25.0%
!! AGTTATACTTTTCCTTATCT+CGG - chr1_1:68863152-68863171 None:intergenic 25.0%
! TTATATTGATCTGACACTTA+TGG + chr1_1:68863215-68863234 Msa0039320:intron 25.0%
! TATGTATGTTTACTACAAGT+AGG + chr1_1:68863339-68863358 Msa0039320:intron 25.0%
! ACAATGAGATTAAGAACTAT+TGG + chr1_1:68863678-68863697 Msa0039320:CDS 25.0%
!! AGTTGGTGAAAGTGAAAAAT+GGG + chr1_1:68862115-68862134 Msa0039320:exon 30.0%
AGCACAAAAGCAAAGAAAAA+GGG - chr1_1:68862294-68862313 None:intergenic 30.0%
AAGCACAAAAGCAAAGAAAA+AGG - chr1_1:68862295-68862314 None:intergenic 30.0%
!! CTTAGTTTTCATACTCTTCA+AGG + chr1_1:68862441-68862460 Msa0039320:intron 30.0%
AATTGACCTAGCCAAATTTA+GGG + chr1_1:68862824-68862843 Msa0039320:intron 30.0%
TGTGAAATGTATAACAGTTG+AGG + chr1_1:68862906-68862925 Msa0039320:intron 30.0%
GGACAATTGCAACAAATTTA+AGG - chr1_1:68863029-68863048 None:intergenic 30.0%
!! TTGAGATTGAGTTGGTTTAA+AGG - chr1_1:68863050-68863069 None:intergenic 30.0%
AATCTTGTCTTAAATAGACC+CGG + chr1_1:68863068-68863087 Msa0039320:intron 30.0%
ATGTTAACTCTTTGCATACA+TGG - chr1_1:68863268-68863287 None:intergenic 30.0%
CAGTGTCAAGAAAAATTTGT+TGG + chr1_1:68863569-68863588 Msa0039320:intron 30.0%
GATAACTATGCTATCTTTCT+AGG + chr1_1:68863618-68863637 Msa0039320:intron 30.0%
CAAAGTTGAAGAAAGTAATC+AGG - chr1_1:68863999-68864018 None:intergenic 30.0%
CTGATTACTTTCTTCAACTT+TGG + chr1_1:68863997-68864016 Msa0039320:CDS 30.0%
ATCACTATCATCATCGAAAT+TGG + chr1_1:68864091-68864110 Msa0039320:CDS 30.0%
AATTTCTTGAATCTCCTTGA+TGG + chr1_1:68864359-68864378 Msa0039320:CDS 30.0%
!! AGTTGGTGAAAGTGAAAAAT+GGG + chr1_1:68862115-68862134 Msa0039320:exon 30.0%
AGCACAAAAGCAAAGAAAAA+GGG - chr1_1:68862294-68862313 None:intergenic 30.0%
AAGCACAAAAGCAAAGAAAA+AGG - chr1_1:68862295-68862314 None:intergenic 30.0%
!! CTTAGTTTTCATACTCTTCA+AGG + chr1_1:68862441-68862460 Msa0039320:intron 30.0%
AATTGACCTAGCCAAATTTA+GGG + chr1_1:68862824-68862843 Msa0039320:intron 30.0%
TGTGAAATGTATAACAGTTG+AGG + chr1_1:68862906-68862925 Msa0039320:intron 30.0%
GGACAATTGCAACAAATTTA+AGG - chr1_1:68863029-68863048 None:intergenic 30.0%
!! TTGAGATTGAGTTGGTTTAA+AGG - chr1_1:68863050-68863069 None:intergenic 30.0%
AATCTTGTCTTAAATAGACC+CGG + chr1_1:68863068-68863087 Msa0039320:intron 30.0%
ATGTTAACTCTTTGCATACA+TGG - chr1_1:68863268-68863287 None:intergenic 30.0%
CAGTGTCAAGAAAAATTTGT+TGG + chr1_1:68863569-68863588 Msa0039320:intron 30.0%
GATAACTATGCTATCTTTCT+AGG + chr1_1:68863618-68863637 Msa0039320:intron 30.0%
CAAAGTTGAAGAAAGTAATC+AGG - chr1_1:68863999-68864018 None:intergenic 30.0%
CTGATTACTTTCTTCAACTT+TGG + chr1_1:68863997-68864016 Msa0039320:CDS 30.0%
ATCACTATCATCATCGAAAT+TGG + chr1_1:68864091-68864110 Msa0039320:CDS 30.0%
AATTTCTTGAATCTCCTTGA+TGG + chr1_1:68864359-68864378 Msa0039320:CDS 30.0%
!! ACTATGGTTTGGTAATGAGT+TGG + chr1_1:68862098-68862117 Msa0039320:five_prime_UTR 35.0%
!! GAGTTGGTGAAAGTGAAAAA+TGG + chr1_1:68862114-68862133 Msa0039320:exon 35.0%
ACTAAAGCTTCATCTTCTTC+AGG - chr1_1:68862190-68862209 None:intergenic 35.0%
GTTGACTACATCAACAAACA+TGG + chr1_1:68862208-68862227 Msa0039320:CDS 35.0%
CCAAAAGTTCACAGAAAGAA+AGG - chr1_1:68862342-68862361 None:intergenic 35.0%
! CCTTTCTTTCTGTGAACTTT+TGG + chr1_1:68862339-68862358 Msa0039320:intron 35.0%
GAATTGACCTAGCCAAATTT+AGG + chr1_1:68862823-68862842 Msa0039320:intron 35.0%
CCATAACAAGTCCCTAAATT+TGG - chr1_1:68862838-68862857 None:intergenic 35.0%
!! CCAAATTTAGGGACTTGTTA+TGG + chr1_1:68862835-68862854 Msa0039320:intron 35.0%
! GAAGTATTACCTCTCTCAAT+AGG + chr1_1:68862859-68862878 Msa0039320:intron 35.0%
GAAATGTATAACAGTTGAGG+TGG + chr1_1:68862909-68862928 Msa0039320:intron 35.0%
!!! TTGTTTTGAGTTTGAATGCG+TGG + chr1_1:68862956-68862975 Msa0039320:intron 35.0%
AGACAAGATTGAGATTGAGT+TGG - chr1_1:68863058-68863077 None:intergenic 35.0%
TCTAAAGAATGACCGAGATA+AGG + chr1_1:68863137-68863156 Msa0039320:intron 35.0%
AGTTTGACCTAGTAATCTCA+AGG - chr1_1:68863194-68863213 None:intergenic 35.0%
GCAACACATTTAGTTACTGT+AGG - chr1_1:68863246-68863265 None:intergenic 35.0%
TCAACTCATCTTAGTCCTAA+AGG + chr1_1:68863510-68863529 Msa0039320:intron 35.0%
TATGAGTGGAATGAACCTTT+AGG - chr1_1:68863528-68863547 None:intergenic 35.0%
TTTACTAAGCAGGTTATGAG+TGG - chr1_1:68863542-68863561 None:intergenic 35.0%
AACTATGCTATCTTTCTAGG+TGG + chr1_1:68863621-68863640 Msa0039320:intron 35.0%
ACTATGCTATCTTTCTAGGT+GGG + chr1_1:68863622-68863641 Msa0039320:intron 35.0%
TGTAGAAGGAGAATTAGACT+GGG - chr1_1:68863777-68863796 None:intergenic 35.0%
AAGCTTCAGTTTGTAGTTAC+TGG - chr1_1:68864222-68864241 None:intergenic 35.0%
AAGCTTGAAGATGATAGATC+TGG + chr1_1:68864236-68864255 Msa0039320:CDS 35.0%
!! ACTATGGTTTGGTAATGAGT+TGG + chr1_1:68862098-68862117 Msa0039320:five_prime_UTR 35.0%
!! GAGTTGGTGAAAGTGAAAAA+TGG + chr1_1:68862114-68862133 Msa0039320:exon 35.0%
ACTAAAGCTTCATCTTCTTC+AGG - chr1_1:68862190-68862209 None:intergenic 35.0%
GTTGACTACATCAACAAACA+TGG + chr1_1:68862208-68862227 Msa0039320:CDS 35.0%
CCAAAAGTTCACAGAAAGAA+AGG - chr1_1:68862342-68862361 None:intergenic 35.0%
! CCTTTCTTTCTGTGAACTTT+TGG + chr1_1:68862339-68862358 Msa0039320:intron 35.0%
GAATTGACCTAGCCAAATTT+AGG + chr1_1:68862823-68862842 Msa0039320:intron 35.0%
CCATAACAAGTCCCTAAATT+TGG - chr1_1:68862838-68862857 None:intergenic 35.0%
!! CCAAATTTAGGGACTTGTTA+TGG + chr1_1:68862835-68862854 Msa0039320:intron 35.0%
! GAAGTATTACCTCTCTCAAT+AGG + chr1_1:68862859-68862878 Msa0039320:intron 35.0%
GAAATGTATAACAGTTGAGG+TGG + chr1_1:68862909-68862928 Msa0039320:intron 35.0%
!!! TTGTTTTGAGTTTGAATGCG+TGG + chr1_1:68862956-68862975 Msa0039320:intron 35.0%
AGACAAGATTGAGATTGAGT+TGG - chr1_1:68863058-68863077 None:intergenic 35.0%
TCTAAAGAATGACCGAGATA+AGG + chr1_1:68863137-68863156 Msa0039320:intron 35.0%
AGTTTGACCTAGTAATCTCA+AGG - chr1_1:68863194-68863213 None:intergenic 35.0%
GCAACACATTTAGTTACTGT+AGG - chr1_1:68863246-68863265 None:intergenic 35.0%
TCAACTCATCTTAGTCCTAA+AGG + chr1_1:68863510-68863529 Msa0039320:intron 35.0%
TATGAGTGGAATGAACCTTT+AGG - chr1_1:68863528-68863547 None:intergenic 35.0%
TTTACTAAGCAGGTTATGAG+TGG - chr1_1:68863542-68863561 None:intergenic 35.0%
AACTATGCTATCTTTCTAGG+TGG + chr1_1:68863621-68863640 Msa0039320:intron 35.0%
ACTATGCTATCTTTCTAGGT+GGG + chr1_1:68863622-68863641 Msa0039320:intron 35.0%
TGTAGAAGGAGAATTAGACT+GGG - chr1_1:68863777-68863796 None:intergenic 35.0%
AAGCTTCAGTTTGTAGTTAC+TGG - chr1_1:68864222-68864241 None:intergenic 35.0%
AAGCTTGAAGATGATAGATC+TGG + chr1_1:68864236-68864255 Msa0039320:CDS 35.0%
TACATCAACAAACATGGCCA+TGG + chr1_1:68862214-68862233 Msa0039320:CDS 40.0%
ACATCAACAAACATGGCCAT+GGG + chr1_1:68862215-68862234 Msa0039320:CDS 40.0%
TTGACAGTACCTGCATGTTT+AGG - chr1_1:68862256-68862275 None:intergenic 40.0%
AACATGCTGAAATTGCTGCT+AGG - chr1_1:68862715-68862734 None:intergenic 40.0%
ATTTCAGCATGTTTCCCTTG+AGG + chr1_1:68862722-68862741 Msa0039320:intron 40.0%
ACAAGTCCCTAAATTTGGCT+AGG - chr1_1:68862833-68862852 None:intergenic 40.0%
TGACCTAGTAATCTCAAGGT+AGG - chr1_1:68863190-68863209 None:intergenic 40.0%
GACAGTGTATCAGAGAAAGA+TGG + chr1_1:68863290-68863309 Msa0039320:intron 40.0%
ATTCAACTTCATGCCATGCT+TGG + chr1_1:68863462-68863481 Msa0039320:CDS 40.0%
!! GAGTTGATAATAGAGCAGTG+AGG - chr1_1:68863497-68863516 None:intergenic 40.0%
CTGCAATGCATTTACTAAGC+AGG - chr1_1:68863552-68863571 None:intergenic 40.0%
ATCTCATTGTCTGTTCTTCC+TGG - chr1_1:68863668-68863687 None:intergenic 40.0%
CCGGACACGTTTCTTTAAAT+GGG - chr1_1:68863708-68863727 None:intergenic 40.0%
CCCATTTAAAGAAACGTGTC+CGG + chr1_1:68863705-68863724 Msa0039320:CDS 40.0%
GTGTAGAAGGAGAATTAGAC+TGG - chr1_1:68863778-68863797 None:intergenic 40.0%
GAGTCCACTTTGCTTAATTC+AGG + chr1_1:68863954-68863973 Msa0039320:CDS 40.0%
AGAGCCTGAATTAAGCAAAG+TGG - chr1_1:68863961-68863980 None:intergenic 40.0%
CAACTTTGGCATTCTGATGT+TGG + chr1_1:68864011-68864030 Msa0039320:CDS 40.0%
ATGTTCAGATGTCTCATTGC+AGG + chr1_1:68864118-68864137 Msa0039320:CDS 40.0%
ACGTCAACATCTTCAAGCTT+TGG - chr1_1:68864182-68864201 None:intergenic 40.0%
TGAAGATGTTGACGTGATTC+AGG + chr1_1:68864187-68864206 Msa0039320:CDS 40.0%
! GATAGATCTGGTTCAGATTC+AGG + chr1_1:68864248-68864267 Msa0039320:CDS 40.0%
CCTGATGAAATAGGATTCCT+GGG + chr1_1:68864326-68864345 Msa0039320:CDS 40.0%
AGAAATTGTCAGTATGTCCC+AGG - chr1_1:68864346-68864365 None:intergenic 40.0%
TACATCAACAAACATGGCCA+TGG + chr1_1:68862214-68862233 Msa0039320:CDS 40.0%
ACATCAACAAACATGGCCAT+GGG + chr1_1:68862215-68862234 Msa0039320:CDS 40.0%
TTGACAGTACCTGCATGTTT+AGG - chr1_1:68862256-68862275 None:intergenic 40.0%
AACATGCTGAAATTGCTGCT+AGG - chr1_1:68862715-68862734 None:intergenic 40.0%
ATTTCAGCATGTTTCCCTTG+AGG + chr1_1:68862722-68862741 Msa0039320:intron 40.0%
ACAAGTCCCTAAATTTGGCT+AGG - chr1_1:68862833-68862852 None:intergenic 40.0%
TGACCTAGTAATCTCAAGGT+AGG - chr1_1:68863190-68863209 None:intergenic 40.0%
GACAGTGTATCAGAGAAAGA+TGG + chr1_1:68863290-68863309 Msa0039320:intron 40.0%
ATTCAACTTCATGCCATGCT+TGG + chr1_1:68863462-68863481 Msa0039320:CDS 40.0%
!! GAGTTGATAATAGAGCAGTG+AGG - chr1_1:68863497-68863516 None:intergenic 40.0%
CTGCAATGCATTTACTAAGC+AGG - chr1_1:68863552-68863571 None:intergenic 40.0%
ATCTCATTGTCTGTTCTTCC+TGG - chr1_1:68863668-68863687 None:intergenic 40.0%
CCGGACACGTTTCTTTAAAT+GGG - chr1_1:68863708-68863727 None:intergenic 40.0%
CCCATTTAAAGAAACGTGTC+CGG + chr1_1:68863705-68863724 Msa0039320:CDS 40.0%
GTGTAGAAGGAGAATTAGAC+TGG - chr1_1:68863778-68863797 None:intergenic 40.0%
GAGTCCACTTTGCTTAATTC+AGG + chr1_1:68863954-68863973 Msa0039320:CDS 40.0%
AGAGCCTGAATTAAGCAAAG+TGG - chr1_1:68863961-68863980 None:intergenic 40.0%
CAACTTTGGCATTCTGATGT+TGG + chr1_1:68864011-68864030 Msa0039320:CDS 40.0%
ATGTTCAGATGTCTCATTGC+AGG + chr1_1:68864118-68864137 Msa0039320:CDS 40.0%
ACGTCAACATCTTCAAGCTT+TGG - chr1_1:68864182-68864201 None:intergenic 40.0%
TGAAGATGTTGACGTGATTC+AGG + chr1_1:68864187-68864206 Msa0039320:CDS 40.0%
! GATAGATCTGGTTCAGATTC+AGG + chr1_1:68864248-68864267 Msa0039320:CDS 40.0%
CCTGATGAAATAGGATTCCT+GGG + chr1_1:68864326-68864345 Msa0039320:CDS 40.0%
AGAAATTGTCAGTATGTCCC+AGG - chr1_1:68864346-68864365 None:intergenic 40.0%
CCCATGTTTCTCACAACAAG+GGG - chr1_1:68862146-68862165 None:intergenic 45.0%
! CCCCTTGTTGTGAGAAACAT+GGG + chr1_1:68862143-68862162 Msa0039320:CDS 45.0%
CCCCATGTTTCTCACAACAA+GGG - chr1_1:68862147-68862166 None:intergenic 45.0%
! CCCTTGTTGTGAGAAACATG+GGG + chr1_1:68862144-68862163 Msa0039320:CDS 45.0%
ACCCCATGTTTCTCACAACA+AGG - chr1_1:68862148-68862167 None:intergenic 45.0%
GAGAAACATGGGGTGAAAAG+AGG + chr1_1:68862154-68862173 Msa0039320:CDS 45.0%
ACACAACTGGAGCAACCATA+AGG - chr1_1:68862689-68862708 None:intergenic 45.0%
TGCTGCTAGGAAAACACAAC+TGG - chr1_1:68862702-68862721 None:intergenic 45.0%
AAACCCAGACATGCTGATAC+GGG - chr1_1:68862772-68862791 None:intergenic 45.0%
CAAACCCAGACATGCTGATA+CGG - chr1_1:68862773-68862792 None:intergenic 45.0%
! TCAGCATGTCTGGGTTTGTT+CGG + chr1_1:68862775-68862794 Msa0039320:intron 45.0%
TTCGGGTCTAGCAATGAGTT+AGG + chr1_1:68862793-68862812 Msa0039320:intron 45.0%
TCGGGTCTAGCAATGAGTTA+GGG + chr1_1:68862794-68862813 Msa0039320:intron 45.0%
! ATCGGGTTTGTTCGTGTCTA+GGG + chr1_1:68863100-68863119 Msa0039320:intron 45.0%
GCTCCTACCTTGAGATTACT+AGG + chr1_1:68863184-68863203 Msa0039320:intron 45.0%
CAAGTAGGTCTCCTAAGATG+CGG + chr1_1:68863354-68863373 Msa0039320:intron 45.0%
TAAGATGCGGCAAAAGTTGC+CGG + chr1_1:68863367-68863386 Msa0039320:CDS 45.0%
GATAGTTTATCCACCGAAGC+CGG - chr1_1:68863389-68863408 None:intergenic 45.0%
TGGATAAACTATCTCCGTCC+TGG + chr1_1:68863396-68863415 Msa0039320:CDS 45.0%
GCCGGACACGTTTCTTTAAA+TGG - chr1_1:68863709-68863728 None:intergenic 45.0%
ATCCATGTCTCCTTCCTGAT+AGG + chr1_1:68863747-68863766 Msa0039320:CDS 45.0%
TTCCTATCAGGAAGGAGACA+TGG - chr1_1:68863752-68863771 None:intergenic 45.0%
TTAGACTGGGCATTCCTATC+AGG - chr1_1:68863764-68863783 None:intergenic 45.0%
GTTGGAGAGAAATTTCGAGC+AGG + chr1_1:68864029-68864048 Msa0039320:CDS 45.0%
TTTCATCAGGCATACGCAGT+AGG - chr1_1:68864316-68864335 None:intergenic 45.0%
CTGCGTATGCCTGATGAAAT+AGG + chr1_1:68864317-68864336 Msa0039320:CDS 45.0%
GCCTGATGAAATAGGATTCC+TGG + chr1_1:68864325-68864344 Msa0039320:CDS 45.0%
CCCAGGAATCCTATTTCATC+AGG - chr1_1:68864329-68864348 None:intergenic 45.0%
CCCATGTTTCTCACAACAAG+GGG - chr1_1:68862146-68862165 None:intergenic 45.0%
! CCCCTTGTTGTGAGAAACAT+GGG + chr1_1:68862143-68862162 Msa0039320:CDS 45.0%
CCCCATGTTTCTCACAACAA+GGG - chr1_1:68862147-68862166 None:intergenic 45.0%
! CCCTTGTTGTGAGAAACATG+GGG + chr1_1:68862144-68862163 Msa0039320:CDS 45.0%
ACCCCATGTTTCTCACAACA+AGG - chr1_1:68862148-68862167 None:intergenic 45.0%
GAGAAACATGGGGTGAAAAG+AGG + chr1_1:68862154-68862173 Msa0039320:CDS 45.0%
ACACAACTGGAGCAACCATA+AGG - chr1_1:68862689-68862708 None:intergenic 45.0%
TGCTGCTAGGAAAACACAAC+TGG - chr1_1:68862702-68862721 None:intergenic 45.0%
AAACCCAGACATGCTGATAC+GGG - chr1_1:68862772-68862791 None:intergenic 45.0%
CAAACCCAGACATGCTGATA+CGG - chr1_1:68862773-68862792 None:intergenic 45.0%
! TCAGCATGTCTGGGTTTGTT+CGG + chr1_1:68862775-68862794 Msa0039320:intron 45.0%
TTCGGGTCTAGCAATGAGTT+AGG + chr1_1:68862793-68862812 Msa0039320:intron 45.0%
TCGGGTCTAGCAATGAGTTA+GGG + chr1_1:68862794-68862813 Msa0039320:intron 45.0%
! ATCGGGTTTGTTCGTGTCTA+GGG + chr1_1:68863100-68863119 Msa0039320:intron 45.0%
GCTCCTACCTTGAGATTACT+AGG + chr1_1:68863184-68863203 Msa0039320:intron 45.0%
CAAGTAGGTCTCCTAAGATG+CGG + chr1_1:68863354-68863373 Msa0039320:intron 45.0%
TAAGATGCGGCAAAAGTTGC+CGG + chr1_1:68863367-68863386 Msa0039320:CDS 45.0%
GATAGTTTATCCACCGAAGC+CGG - chr1_1:68863389-68863408 None:intergenic 45.0%
TGGATAAACTATCTCCGTCC+TGG + chr1_1:68863396-68863415 Msa0039320:CDS 45.0%
GCCGGACACGTTTCTTTAAA+TGG - chr1_1:68863709-68863728 None:intergenic 45.0%
ATCCATGTCTCCTTCCTGAT+AGG + chr1_1:68863747-68863766 Msa0039320:CDS 45.0%
TTCCTATCAGGAAGGAGACA+TGG - chr1_1:68863752-68863771 None:intergenic 45.0%
TTAGACTGGGCATTCCTATC+AGG - chr1_1:68863764-68863783 None:intergenic 45.0%
GTTGGAGAGAAATTTCGAGC+AGG + chr1_1:68864029-68864048 Msa0039320:CDS 45.0%
TTTCATCAGGCATACGCAGT+AGG - chr1_1:68864316-68864335 None:intergenic 45.0%
CTGCGTATGCCTGATGAAAT+AGG + chr1_1:68864317-68864336 Msa0039320:CDS 45.0%
GCCTGATGAAATAGGATTCC+TGG + chr1_1:68864325-68864344 Msa0039320:CDS 45.0%
CCCAGGAATCCTATTTCATC+AGG - chr1_1:68864329-68864348 None:intergenic 45.0%
! GCCCCTTGTTGTGAGAAACA+TGG + chr1_1:68862142-68862161 Msa0039320:CDS 50.0%
ATGGGGTGAAAAGAGGAGCT+TGG + chr1_1:68862161-68862180 Msa0039320:CDS 50.0%
ACAAACATGGCCATGGGAGT+TGG + chr1_1:68862221-68862240 Msa0039320:CDS 50.0%
CGTACGCTTCCTAAACATGC+AGG + chr1_1:68862244-68862263 Msa0039320:CDS 50.0%
CAGCATGTTTCCCTTGAGGT+AGG + chr1_1:68862726-68862745 Msa0039320:intron 50.0%
ACATGCTGATACGGGTCTTC+GGG - chr1_1:68862764-68862783 None:intergenic 50.0%
GACATGCTGATACGGGTCTT+CGG - chr1_1:68862765-68862784 None:intergenic 50.0%
AAGACCCGTATCAGCATGTC+TGG + chr1_1:68862765-68862784 Msa0039320:intron 50.0%
AGACCCGTATCAGCATGTCT+GGG + chr1_1:68862766-68862785 Msa0039320:intron 50.0%
! CAGCATGTCTGGGTTTGTTC+GGG + chr1_1:68862776-68862795 Msa0039320:intron 50.0%
! CATCGGGTTTGTTCGTGTCT+AGG + chr1_1:68863099-68863118 Msa0039320:intron 50.0%
TGTCTAGGGACGACGAGTTT+GGG + chr1_1:68863114-68863133 Msa0039320:intron 50.0%
CTCAAGGTAGGAGCGAACAA+GGG - chr1_1:68863178-68863197 None:intergenic 50.0%
TCTCAAGGTAGGAGCGAACA+AGG - chr1_1:68863179-68863198 None:intergenic 50.0%
! GGCAACTTTTGCCGCATCTT+AGG - chr1_1:68863368-68863387 None:intergenic 50.0%
TTCATGCCATGCTTGGCAAC+AGG + chr1_1:68863469-68863488 Msa0039320:CDS 50.0%
GCTATAGCAGCTCAACTACC+AGG + chr1_1:68863647-68863666 Msa0039320:CDS 50.0%
! GTTTTTCCCTTAGCGACTGC+CGG - chr1_1:68863727-68863746 None:intergenic 50.0%
ACTGGGCATTCCTATCAGGA+AGG - chr1_1:68863760-68863779 None:intergenic 50.0%
TTCTCCTTCTACACGCCACA+TGG + chr1_1:68863784-68863803 Msa0039320:CDS 50.0%
!! GCTTTGGTGTCGACACTTTC+AGG - chr1_1:68864166-68864185 None:intergenic 50.0%
! GCCCCTTGTTGTGAGAAACA+TGG + chr1_1:68862142-68862161 Msa0039320:CDS 50.0%
ATGGGGTGAAAAGAGGAGCT+TGG + chr1_1:68862161-68862180 Msa0039320:CDS 50.0%
ACAAACATGGCCATGGGAGT+TGG + chr1_1:68862221-68862240 Msa0039320:CDS 50.0%
CGTACGCTTCCTAAACATGC+AGG + chr1_1:68862244-68862263 Msa0039320:CDS 50.0%
CAGCATGTTTCCCTTGAGGT+AGG + chr1_1:68862726-68862745 Msa0039320:intron 50.0%
ACATGCTGATACGGGTCTTC+GGG - chr1_1:68862764-68862783 None:intergenic 50.0%
GACATGCTGATACGGGTCTT+CGG - chr1_1:68862765-68862784 None:intergenic 50.0%
AAGACCCGTATCAGCATGTC+TGG + chr1_1:68862765-68862784 Msa0039320:intron 50.0%
AGACCCGTATCAGCATGTCT+GGG + chr1_1:68862766-68862785 Msa0039320:intron 50.0%
! CAGCATGTCTGGGTTTGTTC+GGG + chr1_1:68862776-68862795 Msa0039320:intron 50.0%
! CATCGGGTTTGTTCGTGTCT+AGG + chr1_1:68863099-68863118 Msa0039320:intron 50.0%
TGTCTAGGGACGACGAGTTT+GGG + chr1_1:68863114-68863133 Msa0039320:intron 50.0%
CTCAAGGTAGGAGCGAACAA+GGG - chr1_1:68863178-68863197 None:intergenic 50.0%
TCTCAAGGTAGGAGCGAACA+AGG - chr1_1:68863179-68863198 None:intergenic 50.0%
! GGCAACTTTTGCCGCATCTT+AGG - chr1_1:68863368-68863387 None:intergenic 50.0%
TTCATGCCATGCTTGGCAAC+AGG + chr1_1:68863469-68863488 Msa0039320:CDS 50.0%
GCTATAGCAGCTCAACTACC+AGG + chr1_1:68863647-68863666 Msa0039320:CDS 50.0%
! GTTTTTCCCTTAGCGACTGC+CGG - chr1_1:68863727-68863746 None:intergenic 50.0%
ACTGGGCATTCCTATCAGGA+AGG - chr1_1:68863760-68863779 None:intergenic 50.0%
TTCTCCTTCTACACGCCACA+TGG + chr1_1:68863784-68863803 Msa0039320:CDS 50.0%
!! GCTTTGGTGTCGACACTTTC+AGG - chr1_1:68864166-68864185 None:intergenic 50.0%
CATGCTCGCACCTACCTCAA+GGG - chr1_1:68862739-68862758 None:intergenic 55.0%
TCATGCTCGCACCTACCTCA+AGG - chr1_1:68862740-68862759 None:intergenic 55.0%
TAGACCCGGTCGTAGAGCAT+CGG + chr1_1:68863082-68863101 Msa0039320:intron 55.0%
AAACCCGATGCTCTACGACC+GGG - chr1_1:68863089-68863108 None:intergenic 55.0%
CAAACCCGATGCTCTACGAC+CGG - chr1_1:68863090-68863109 None:intergenic 55.0%
GTGTCTAGGGACGACGAGTT+TGG + chr1_1:68863113-68863132 Msa0039320:intron 55.0%
AATGAGCCACGCTTGATGCC+AGG - chr1_1:68863417-68863436 None:intergenic 55.0%
! GAGGTACCTGTTGCCAAGCA+TGG - chr1_1:68863478-68863497 None:intergenic 55.0%
CAAGGGTTGAAGCAGAGACG+AGG + chr1_1:68863922-68863941 Msa0039320:intron 55.0%
CATGCTCGCACCTACCTCAA+GGG - chr1_1:68862739-68862758 None:intergenic 55.0%
TCATGCTCGCACCTACCTCA+AGG - chr1_1:68862740-68862759 None:intergenic 55.0%
TAGACCCGGTCGTAGAGCAT+CGG + chr1_1:68863082-68863101 Msa0039320:intron 55.0%
AAACCCGATGCTCTACGACC+GGG - chr1_1:68863089-68863108 None:intergenic 55.0%
CAAACCCGATGCTCTACGAC+CGG - chr1_1:68863090-68863109 None:intergenic 55.0%
GTGTCTAGGGACGACGAGTT+TGG + chr1_1:68863113-68863132 Msa0039320:intron 55.0%
AATGAGCCACGCTTGATGCC+AGG - chr1_1:68863417-68863436 None:intergenic 55.0%
! GAGGTACCTGTTGCCAAGCA+TGG - chr1_1:68863478-68863497 None:intergenic 55.0%
CAAGGGTTGAAGCAGAGACG+AGG + chr1_1:68863922-68863941 Msa0039320:intron 55.0%
GAAGCGTACGCCAACTCCCA+TGG - chr1_1:68862234-68862253 None:intergenic 60.0%
! AGACCCGGTCGTAGAGCATC+GGG + chr1_1:68863083-68863102 Msa0039320:intron 60.0%
!! GCGGCAAAAGTTGCCGGCTT+CGG + chr1_1:68863373-68863392 Msa0039320:CDS 60.0%
!! GCAAAAGTTGCCGGCTTCGG+TGG + chr1_1:68863376-68863395 Msa0039320:CDS 60.0%
AGCCACGCTTGATGCCAGGA+CGG - chr1_1:68863413-68863432 None:intergenic 60.0%
AACGTGTCCGGCAGTCGCTA+AGG + chr1_1:68863717-68863736 Msa0039320:CDS 60.0%
ACGTGTCCGGCAGTCGCTAA+GGG + chr1_1:68863718-68863737 Msa0039320:CDS 60.0%
TGGGCCATGTGGCGTGTAGA+AGG - chr1_1:68863791-68863810 None:intergenic 60.0%
TACACGCCACATGGCCCAGT+GGG + chr1_1:68863793-68863812 Msa0039320:intron 60.0%
CACTTTCCCACTGGGCCATG+TGG - chr1_1:68863802-68863821 None:intergenic 60.0%
AGCAGAGACGAGGCTGTCGT+TGG + chr1_1:68863932-68863951 Msa0039320:CDS 60.0%
GAAGCGTACGCCAACTCCCA+TGG - chr1_1:68862234-68862253 None:intergenic 60.0%
! AGACCCGGTCGTAGAGCATC+GGG + chr1_1:68863083-68863102 Msa0039320:intron 60.0%
!! GCGGCAAAAGTTGCCGGCTT+CGG + chr1_1:68863373-68863392 Msa0039320:CDS 60.0%
!! GCAAAAGTTGCCGGCTTCGG+TGG + chr1_1:68863376-68863395 Msa0039320:CDS 60.0%
AGCCACGCTTGATGCCAGGA+CGG - chr1_1:68863413-68863432 None:intergenic 60.0%
AACGTGTCCGGCAGTCGCTA+AGG + chr1_1:68863717-68863736 Msa0039320:CDS 60.0%
ACGTGTCCGGCAGTCGCTAA+GGG + chr1_1:68863718-68863737 Msa0039320:CDS 60.0%
TGGGCCATGTGGCGTGTAGA+AGG - chr1_1:68863791-68863810 None:intergenic 60.0%
TACACGCCACATGGCCCAGT+GGG + chr1_1:68863793-68863812 Msa0039320:intron 60.0%
CACTTTCCCACTGGGCCATG+TGG - chr1_1:68863802-68863821 None:intergenic 60.0%
AGCAGAGACGAGGCTGTCGT+TGG + chr1_1:68863932-68863951 Msa0039320:CDS 60.0%
CTCCGTCCTGGCATCAAGCG+TGG + chr1_1:68863408-68863427 Msa0039320:CDS 65.0%
CTACACGCCACATGGCCCAG+TGG + chr1_1:68863792-68863811 Msa0039320:intron 65.0%
CTCCGTCCTGGCATCAAGCG+TGG + chr1_1:68863408-68863427 Msa0039320:CDS 65.0%
CTACACGCCACATGGCCCAG+TGG + chr1_1:68863792-68863811 Msa0039320:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 68862064 68864394 68862064 ID=Msa0039320;Name=Msa0039320
chr1_1 mRNA 68862064 68864394 68862064 ID=Msa0039320-mRNA-1;Parent=Msa0039320;Name=Msa0039320-mRNA-1;_AED=0.31;_eAED=0.31;_QI=69|0.66|0.5|1|1|1|4|0|300
chr1_1 exon 68862064 68862265 68862064 ID=Msa0039320-mRNA-1:exon:22512;Parent=Msa0039320-mRNA-1
chr1_1 exon 68863361 68863490 68863361 ID=Msa0039320-mRNA-1:exon:22513;Parent=Msa0039320-mRNA-1
chr1_1 exon 68863640 68863810 68863640 ID=Msa0039320-mRNA-1:exon:22514;Parent=Msa0039320-mRNA-1
chr1_1 exon 68863926 68864394 68863926 ID=Msa0039320-mRNA-1:exon:22515;Parent=Msa0039320-mRNA-1
chr1_1 five_prime_UTR 68862064 68862132 68862064 ID=Msa0039320-mRNA-1:five_prime_utr;Parent=Msa0039320-mRNA-1
chr1_1 CDS 68862133 68862265 68862133 ID=Msa0039320-mRNA-1:cds;Parent=Msa0039320-mRNA-1
chr1_1 CDS 68863361 68863490 68863361 ID=Msa0039320-mRNA-1:cds;Parent=Msa0039320-mRNA-1
chr1_1 CDS 68863640 68863810 68863640 ID=Msa0039320-mRNA-1:cds;Parent=Msa0039320-mRNA-1
chr1_1 CDS 68863926 68864394 68863926 ID=Msa0039320-mRNA-1:cds;Parent=Msa0039320-mRNA-1
Gene Sequence

>Msa0039320

ATGGGTAAAGCCCCTTGTTGTGAGAAACATGGGGTGAAAAGAGGAGCTTGGACTCCTGAAGAAGATGAAGCTTTAGTTGACTACATCAACAAACATGGCCATGGGAGTTGGCGTACGCTTCCTAAACATGCAGGTCTCCTAAGATGCGGCAAAAGTTGCCGGCTTCGGTGGATAAACTATCTCCGTCCTGGCATCAAGCGTGGCTCATTTACTAATGAAGAAGAAACTACTATTATTCAACTTCATGCCATGCTTGGCAACAGGTGGGCTGCTATAGCAGCTCAACTACCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATTTAAAGAAACGTGTCCGGCAGTCGCTAAGGGAAAAACATCCATGTCTCCTTCCTGATAGGAATGCCCAGTCTAATTCTCCTTCTACACGCCACATGGCCCAGGTTGAAGCAGAGACGAGGCTGTCGTTGGAGTCCACTTTGCTTAATTCAGGCTCTACGACTAAAACATATCCTGATTACTTTCTTCAACTTTGGCATTCTGATGTTGGAGAGAAATTTCGAGCAGGAGTAGTGTGTCAAAGCATTGTCTCACAAGCATCATCATCATCACTATCATCATCGAAATTGGAGTCATGTTCAGATGTCTCATTGCAGGTGAAAAACAACGAAACACAAAGCCTGAAAGTGTCGACACCAAAGCTTGAAGATGTTGACGTGATTCAGGAACAAAAAGCCAGTAACTACAAACTGAAGCTTGAAGATGATAGATCTGGTTCAGATTCAGGAAATTATGAGTTTCTTGATACTTCTGATTCTGCACTGAAGCACCTACTGCGTATGCCTGATGAAATAGGATTCCTGGGACATACTGACAATTTCTTGAATCTCCTTGATGGTAGATGTGACTAA
Protein sequence

>Msa0039320

MGKAPCCEKHGVKRGAWTPEEDEALVDYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGSFTNEEETTIIQLHAMLGNRWAAIAAQLPGRTDNEIKNYWNTHLKKRVRQSLREKHPCLLPDRNAQSNSPSTRHMAQVEAETRLSLESTLLNSGSTTKTYPDYFLQLWHSDVGEKFRAGVVCQSIVSQASSSSLSSSKLESCSDVSLQVKNNETQSLKVSTPKLEDVDVIQEQKASNYKLKLEDDRSGSDSGNYEFLDTSDSALKHLLRMPDEIGFLGHTDNFLNLLDGRCD*