AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039520 MtrunA17_Chr1g0203721 94.760 458 22 1 187 644 428 883 0.0 874
Msa0039520 MtrunA17_Chr1g0203721 93.750 192 12 0 1 192 1 192 1.30e-122 385
Msa0039520 MtrunA17_Chr6g0458391 44.907 216 112 1 168 383 558 766 1.71e-58 210
Msa0039520 MtrunA17_Chr6g0458391 51.562 128 60 1 59 186 221 346 2.19e-34 139
Msa0039520 MtrunA17_Chr6g0458391 43.353 173 87 4 22 190 50 215 1.98e-32 133
Msa0039520 MtrunA17_Chr3g0082121 40.293 273 154 3 174 445 385 649 1.69e-44 169
Msa0039520 MtrunA17_Chr3g0082121 53.684 95 43 1 69 162 49 143 1.39e-23 105
Msa0039520 MtrunA17_Chr2g0324011 32.093 215 145 1 187 400 372 586 1.56e-34 139
Msa0039520 MtrunA17_Chr5g0448511 27.027 259 188 1 187 444 201 459 1.47e-28 120
Msa0039520 MtrunA17_Chr5g0448761 26.712 292 209 4 187 476 429 717 7.66e-26 113
Msa0039520 MtrunA17_Chr5g0448761 37.736 106 62 2 66 167 63 168 1.35e-11 67.8
Msa0039520 MtrunA17_Chr3g0118611 27.536 276 186 6 187 458 307 572 1.81e-25 112
Msa0039520 MtrunA17_Chr8g0363841 32.367 207 123 6 186 382 378 577 3.49e-25 110
Msa0039520 MtrunA17_Chr5g0440451 28.205 273 182 5 190 458 413 675 9.15e-25 110
Msa0039520 MtrunA17_Chr5g0401121 50.526 95 46 1 69 162 62 156 1.40e-24 100
Msa0039520 MtrunA17_Chr2g0329031 27.165 254 169 5 191 439 371 613 2.69e-23 105
Msa0039520 MtrunA17_Chr2g0329031 40.000 95 54 2 69 163 20 111 2.36e-11 67.0
Msa0039520 MtrunA17_Chr1g0207551 28.916 249 170 3 192 439 399 641 1.22e-22 103
Msa0039520 MtrunA17_Chr1g0202341 25.735 272 198 3 186 454 412 682 3.82e-22 101
Msa0039520 MtrunA17_Chr3g0080351 27.490 251 177 1 187 437 428 673 5.50e-22 101
Msa0039520 MtrunA17_Chr3g0080351 36.036 111 58 1 66 163 79 189 3.57e-12 69.7
Msa0039520 MtrunA17_Chr4g0033611 36.306 157 88 5 27 180 47 194 3.18e-20 90.9
Msa0039520 MtrunA17_Chr5g0441581 24.188 277 181 8 187 445 382 647 2.46e-18 89.4
Msa0039520 MtrunA17_Chr2g0291581 28.780 205 136 5 187 382 418 621 4.49e-17 85.1
Msa0039520 MtrunA17_Chr2g0329421 37.755 98 60 1 65 162 29 125 1.96e-16 78.6
Msa0039520 MtrunA17_Chr2g0287061 26.538 260 183 3 179 436 499 752 2.10e-16 83.2
Msa0039520 MtrunA17_Chr2g0287061 36.364 99 50 1 65 163 185 270 4.06e-12 69.7
Msa0039520 MtrunA17_Chr2g0287061 36.364 99 50 1 65 163 31 116 2.08e-11 67.4
Msa0039520 MtrunA17_Chr7g0233911 32.090 134 77 2 65 184 36 169 1.78e-15 75.9
Msa0039520 MtrunA17_Chr2g0308841 22.066 213 164 2 176 386 19 231 2.82e-15 76.6
Msa0039520 MtrunA17_Chr1g0198761 23.936 188 140 1 196 383 429 613 2.26e-14 76.6
Msa0039520 MtrunA17_Chr7g0238821 36.111 108 66 3 69 175 3 108 1.54e-12 64.3
Msa0039520 MtrunA17_Chr2g0287651 22.275 211 158 3 176 382 424 632 2.06e-12 70.5
Msa0039520 MtrunA17_Chr2g0329361 36.111 108 61 2 65 167 63 167 5.92e-12 66.2
Msa0039520 MtrunA17_Chr7g0258861 33.636 110 71 2 65 173 12 120 6.95e-12 67.0
Msa0039520 MtrunA17_Chr3g0078041 37.755 98 60 1 66 162 53 150 2.85e-11 63.9
Msa0039520 MtrunA17_Chr2g0291591 32.353 170 87 8 17 170 12 169 3.69e-11 66.2
Msa0039520 MtrunA17_Chr2g0294841 35.398 113 65 3 59 163 41 153 9.32e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039520 AT4G38170.1 25.939 293 194 3 187 478 203 473 1.13e-30 127
Msa0039520 AT2G32250.2 29.825 285 182 8 187 463 358 632 5.84e-29 123
Msa0039520 AT2G32250.2 33.333 150 82 4 14 163 4 135 2.04e-11 67.8
Msa0039520 AT2G32250.4 29.825 285 182 8 187 463 358 632 5.84e-29 123
Msa0039520 AT2G32250.4 33.333 150 82 4 14 163 4 135 2.04e-11 67.8
Msa0039520 AT2G32250.6 29.825 285 182 8 187 463 358 632 5.86e-29 123
Msa0039520 AT2G32250.6 33.333 150 82 4 14 163 4 135 2.05e-11 67.8
Msa0039520 AT2G32250.1 29.825 285 182 8 187 463 358 632 5.86e-29 123
Msa0039520 AT2G32250.1 33.333 150 82 4 14 163 4 135 2.05e-11 67.8
Msa0039520 AT2G32250.3 29.825 285 182 8 187 463 358 632 5.86e-29 123
Msa0039520 AT2G32250.3 33.333 150 82 4 14 163 4 135 2.05e-11 67.8
Msa0039520 AT2G32250.8 29.825 285 182 8 187 463 317 591 8.06e-29 122
Msa0039520 AT2G32250.8 37.895 95 56 1 69 163 3 94 7.96e-11 65.9
Msa0039520 AT2G32250.5 29.825 285 182 8 187 463 358 632 8.24e-29 122
Msa0039520 AT2G32250.5 33.333 150 82 4 14 163 4 135 1.47e-11 68.2
Msa0039520 AT2G32250.7 29.825 285 182 8 187 463 317 591 8.77e-29 122
Msa0039520 AT2G32250.7 37.895 95 56 1 69 163 3 94 7.97e-11 65.9
Msa0039520 AT3G22170.2 26.449 276 189 3 186 457 422 687 1.98e-27 118
Msa0039520 AT3G22170.2 28.415 183 95 4 2 163 16 183 1.37e-11 68.2
Msa0039520 AT3G22170.1 26.449 276 189 3 186 457 422 687 1.98e-27 118
Msa0039520 AT3G22170.1 28.415 183 95 4 2 163 16 183 1.37e-11 68.2
Msa0039520 AT4G38180.1 27.734 256 184 1 187 441 438 693 4.17e-26 114
Msa0039520 AT4G38180.1 33.143 175 97 3 13 167 6 180 2.52e-15 80.1
Msa0039520 AT4G15090.1 28.235 255 176 4 186 439 413 661 1.54e-24 109
Msa0039520 AT4G15090.5 28.235 255 176 4 186 439 413 661 1.54e-24 109
Msa0039520 AT4G15090.3 28.235 255 176 4 186 439 413 661 1.54e-24 109
Msa0039520 AT4G15090.2 28.235 255 176 4 186 439 413 661 1.54e-24 109
Msa0039520 AT4G15090.4 28.235 255 176 4 186 439 413 661 1.54e-24 109
Msa0039520 AT3G06250.2 29.119 261 173 5 186 444 510 760 4.63e-23 104
Msa0039520 AT3G06250.2 34.783 115 61 2 66 180 193 293 7.45e-12 68.9
Msa0039520 AT3G06250.2 34.343 99 52 1 65 163 30 115 1.51e-11 68.2
Msa0039520 AT3G06250.1 29.119 261 173 5 186 444 510 760 4.63e-23 104
Msa0039520 AT3G06250.1 34.783 115 61 2 66 180 193 293 7.45e-12 68.9
Msa0039520 AT3G06250.1 34.343 99 52 1 65 163 30 115 1.51e-11 68.2
Msa0039520 AT3G06250.3 29.119 261 173 5 186 444 510 760 4.63e-23 104
Msa0039520 AT3G06250.3 34.783 115 61 2 66 180 193 293 7.45e-12 68.9
Msa0039520 AT3G06250.3 34.343 99 52 1 65 163 30 115 1.51e-11 68.2
Msa0039520 AT2G27110.2 27.969 261 179 5 189 448 387 639 1.14e-22 103
Msa0039520 AT2G27110.1 27.969 261 179 5 189 448 387 639 1.14e-22 103
Msa0039520 AT2G27110.3 27.969 261 179 5 189 448 242 494 1.48e-22 103
Msa0039520 AT5G18960.2 27.799 259 167 6 192 444 540 784 6.86e-22 101
Msa0039520 AT5G18960.2 29.801 151 85 3 13 163 1 130 3.64e-12 70.1
Msa0039520 AT5G18960.2 38.679 106 51 2 66 171 214 305 3.97e-12 70.1
Msa0039520 AT5G18960.1 27.799 259 167 6 192 444 540 784 6.86e-22 101
Msa0039520 AT5G18960.1 29.801 151 85 3 13 163 1 130 3.64e-12 70.1
Msa0039520 AT5G18960.1 38.679 106 51 2 66 171 214 305 3.97e-12 70.1
Msa0039520 AT4G19990.6 29.242 277 188 4 190 462 365 637 3.74e-20 95.5
Msa0039520 AT4G19990.2 29.242 277 188 4 190 462 365 637 3.74e-20 95.5
Msa0039520 AT4G19990.3 29.242 277 188 4 190 462 365 637 5.24e-20 95.1
Msa0039520 AT4G19990.4 29.242 277 188 4 190 462 365 637 5.24e-20 95.1
Msa0039520 AT4G19990.5 29.242 277 188 4 190 462 365 637 5.27e-20 95.1
Msa0039520 AT4G19990.1 29.242 277 188 4 190 462 308 580 5.33e-20 95.1
Msa0039520 AT4G19990.7 29.242 277 188 4 190 462 379 651 6.99e-20 94.7
Msa0039520 AT1G76320.2 25.200 250 176 3 192 439 356 596 7.58e-20 94.7
Msa0039520 AT1G76320.1 25.200 250 176 3 192 439 356 596 7.60e-20 94.7
Msa0039520 AT1G76320.4 25.200 250 176 3 192 439 356 596 7.60e-20 94.7
Msa0039520 AT1G76320.3 25.200 250 176 3 192 439 356 596 2.33e-19 92.8
Msa0039520 AT1G52520.1 27.509 269 182 6 186 444 433 698 3.99e-19 92.4
Msa0039520 AT3G59470.3 40.816 98 57 1 65 162 72 168 8.51e-19 87.0
Msa0039520 AT3G59470.1 40.816 98 57 1 65 162 72 168 8.51e-19 87.0
Msa0039520 AT3G59470.2 40.816 98 57 1 65 162 84 180 1.02e-18 87.0
Msa0039520 AT3G07500.1 41.667 108 62 1 65 172 35 141 4.80e-18 84.0
Msa0039520 AT2G43280.1 36.735 98 61 1 66 162 25 122 3.74e-13 69.3
Msa0039520 AT4G12850.4 32.653 98 63 1 65 162 13 107 3.80e-13 67.8
Msa0039520 AT1G80010.1 24.176 273 195 6 180 444 452 720 1.23e-12 71.6
Msa0039520 AT4G12850.2 32.653 98 63 1 65 162 13 107 7.49e-12 63.9
Msa0039520 AT4G12850.1 32.653 98 63 1 65 162 13 107 1.17e-11 64.3

Find 141 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTCGGACTGCAACAATTT+TGG 0.148412 1_1:+69223635 None:intergenic
TAATGTATTTGATCTAAATT+TGG 0.175784 1_1:-69220476 Msa0039520:three_prime_UTR
AGGATTCTGAATGAGGATTT+TGG 0.176822 1_1:+69220729 None:intergenic
AATATGAGCTGATGAATATT+TGG 0.194524 1_1:+69220521 None:intergenic
CAGCTTGCTACAACCATCTT+AGG 0.224643 1_1:+69221813 None:intergenic
CGGACTCAGGGTATGTGTTT+TGG 0.248605 1_1:+69220912 None:intergenic
GATTATGTTGTGCTTCAAAA+TGG 0.267872 1_1:+69223266 None:intergenic
TTAGAAAAGATTGGATTAAT+AGG 0.287407 1_1:-69223459 Msa0039520:CDS
CTTACCTGCAAAAGGAGATT+TGG 0.313290 1_1:+69221387 None:intergenic
CCTCCACTATCCTTTCAAAA+TGG 0.316329 1_1:+69222273 None:intergenic
ACCACATTACCCATTAGTTT+TGG 0.332898 1_1:+69222200 None:intergenic
ACTTGGAACATCCAATAGTT+TGG 0.334138 1_1:-69223671 Msa0039520:CDS
GGCTTTGTCAACACAGTGTT+GGG 0.338463 1_1:-69223559 Msa0039520:CDS
CACATTCAAGTCCAAACTAT+TGG 0.341769 1_1:+69223660 None:intergenic
CATGCATTGAACCACTTCAT+TGG 0.347987 1_1:+69221138 None:intergenic
GAGTATAAAGTGAATACATT+TGG 0.351199 1_1:-69222059 Msa0039520:CDS
CCGAACGTTCTTCACGCTAA+TGG 0.356305 1_1:-69223619 Msa0039520:CDS
AACAACATGTTAGAATTGAT+TGG 0.361206 1_1:+69223229 None:intergenic
TACATGGTATGGCGGTTTCT+AGG 0.367496 1_1:-69223429 Msa0039520:CDS
AGTATAAAGTGAATACATTT+GGG 0.372000 1_1:-69222058 Msa0039520:CDS
GGGACGTCTTCCAAAACTAA+TGG 0.374298 1_1:-69222210 Msa0039520:CDS
GGTTCAATGTTAGAAAAGAT+TGG 0.384400 1_1:-69223468 Msa0039520:CDS
CCACAGACTTGTCAAGTTAT+CGG 0.386090 1_1:-69221775 Msa0039520:CDS
CATCGGAAGGAGACGAGAAC+TGG 0.388859 1_1:-69223343 Msa0039520:CDS
GATGTCAAAGGCTTTCATTT+AGG 0.388977 1_1:-69222362 Msa0039520:CDS
TGAAATATTTCAAATGCTCT+TGG 0.400052 1_1:+69222146 None:intergenic
TTATTGCTTGGCACGGACTC+AGG 0.403375 1_1:+69220899 None:intergenic
TTTGGTTGAGATGAAACATA+TGG 0.404147 1_1:+69221405 None:intergenic
GGAGACGAGAACTGGGTGTT+TGG 0.406715 1_1:-69223335 Msa0039520:CDS
AGAAGTTTGGCGGTTGGAAC+AGG 0.408816 1_1:+69221071 None:intergenic
TGTTGGTTAGAATAGAAGTT+TGG 0.411083 1_1:+69221058 None:intergenic
GAGAAATGGGCTGTCTGCTT+TGG 0.411646 1_1:-69222404 Msa0039520:CDS
TGAGATGGATGTATAGAGAA+AGG 0.414378 1_1:-69222427 Msa0039520:CDS
GTATAGAGAAAGGGAGAAAT+GGG 0.415013 1_1:-69222417 Msa0039520:CDS
TGTATAGAGAAAGGGAGAAA+TGG 0.415562 1_1:-69222418 Msa0039520:CDS
TGTATTATCTGAAGAATTGA+AGG 0.418492 1_1:+69222013 None:intergenic
AACATTGAACCCCATCAATC+TGG 0.425557 1_1:+69223480 None:intergenic
ACAACATGTTAGAATTGATT+GGG 0.429453 1_1:+69223230 None:intergenic
AGTCAGAACTTCGGTATCTA+TGG 0.430265 1_1:+69220690 None:intergenic
ACCGTTGGTTGGCACCTATC+CGG 0.436386 1_1:+69221513 None:intergenic
TGGACATGCGACTGAGGATC+AGG 0.436653 1_1:-69221580 Msa0039520:CDS
AATAATGGCATTGCCAATAC+AGG 0.438574 1_1:+69220630 None:intergenic
TAACAAGTATGCCAGATTGA+TGG 0.451658 1_1:-69223491 Msa0039520:CDS
GTCAACACAGTGTTGGGAAT+CGG 0.451939 1_1:-69223553 Msa0039520:CDS
AATGGCTCTCAAACTCAATC+TGG 0.454597 1_1:-69223601 Msa0039520:CDS
AACAAGTATGCCAGATTGAT+GGG 0.458593 1_1:-69223490 Msa0039520:CDS
GGTCGAAACATATCCTGTAT+TGG 0.462117 1_1:-69220643 Msa0039520:three_prime_UTR
ACCTATCCGGTGTAGCGGTC+CGG 0.463718 1_1:+69221526 None:intergenic
TCCTCAGTCGCATGTCCATT+CGG 0.464228 1_1:+69221585 None:intergenic
GATAAAAGCTTACCTGCAAA+AGG 0.465295 1_1:+69221379 None:intergenic
TGATGATCCAACACAAGATC+AGG 0.465463 1_1:+69221106 None:intergenic
ATCTACATGAATACTATTTG+AGG 0.467176 1_1:+69221638 None:intergenic
ATGCAAGGTTGGGTAATGTC+AGG 0.468937 1_1:-69221866 Msa0039520:CDS
GAGATGGATGTATAGAGAAA+GGG 0.473743 1_1:-69222426 Msa0039520:CDS
AGAAGCTAGTGATGAAATGA+AGG 0.475887 1_1:-69222231 Msa0039520:CDS
GGACGTCTTCCAAAACTAAT+GGG 0.478872 1_1:-69222209 Msa0039520:CDS
TGTTGCATCTGATTATTGCT+TGG 0.479286 1_1:+69220887 None:intergenic
ATGGTCACACAGCAGGATAC+AGG 0.483241 1_1:+69220709 None:intergenic
CAGACAACAGTATTTGAAGA+AGG 0.483624 1_1:+69221447 None:intergenic
AGCTTGCTACAACCATCTTA+GGG 0.484144 1_1:+69221814 None:intergenic
ATAGTCAAACTGATTCAGAT+AGG 0.484318 1_1:-69221485 Msa0039520:CDS
GAGGCAACTTGACGAAGTTA+TGG 0.484472 1_1:-69221712 Msa0039520:CDS
AATTCTAGATAACCCTAAGA+TGG 0.489622 1_1:-69221826 Msa0039520:CDS
ATATTAAAAGATACTCTGTC+TGG 0.493585 1_1:-69220503 Msa0039520:three_prime_UTR
CTCGATATATCTTGAAGAGA+TGG 0.495398 1_1:-69221896 Msa0039520:CDS
AAGCAATAATCAGATGCAAC+AGG 0.498238 1_1:-69220885 Msa0039520:intron
GACTATAATTCACCGTTGGT+TGG 0.504813 1_1:+69221502 None:intergenic
TCTGGTAATGCATCAGCAAA+TGG 0.509074 1_1:-69223583 Msa0039520:CDS
ACGATATCCCTCTCTGGAGC+AGG 0.509622 1_1:+69223399 None:intergenic
GATGGTGATCATAACAACTT+AGG 0.510043 1_1:-69223724 Msa0039520:CDS
CCATTAGCGTGAAGAACGTT+CGG 0.511332 1_1:+69223619 None:intergenic
ATTATGTTGTGCTTCAAAAT+GGG 0.511977 1_1:+69223267 None:intergenic
TAGGAGTAAGGTACATGGTA+TGG 0.513386 1_1:-69223440 Msa0039520:CDS
GGTATCTATGGTCACACAGC+AGG 0.514778 1_1:+69220702 None:intergenic
TGAGATGAAACATATGGAGA+TGG 0.517004 1_1:+69221411 None:intergenic
GAGATGAAACATATGGAGAT+GGG 0.517572 1_1:+69221412 None:intergenic
ATGGACAAAAGATGCAAGGT+TGG 0.517774 1_1:-69221877 Msa0039520:CDS
AATTGACCGGACCGCTACAC+CGG 0.518366 1_1:-69221532 Msa0039520:CDS
TAGAATAGAAGTTTGGCGGT+TGG 0.518493 1_1:+69221065 None:intergenic
ATCATTACTCGTCAACAAGA+TGG 0.520020 1_1:-69223304 Msa0039520:CDS
GAAAATGTTGATGTTGGACT+TGG 0.524439 1_1:-69223688 Msa0039520:CDS
TTTCCTACGATATCCCTCTC+TGG 0.525239 1_1:+69223393 None:intergenic
CCGGTCTTAAACAAAAGAAA+AGG 0.527396 1_1:+69220437 None:intergenic
TGGTTAGAATAGAAGTTTGG+CGG 0.528921 1_1:+69221061 None:intergenic
CATGTAGAAAATGTTGATGT+TGG 0.531700 1_1:-69223694 Msa0039520:CDS
AGATTGGATTAATAGGAGTA+AGG 0.541743 1_1:-69223452 Msa0039520:CDS
ATAAACTCCAGCAAAATGAA+TGG 0.541841 1_1:-69222451 Msa0039520:intron
AGGCTTTGTCAACACAGTGT+TGG 0.544299 1_1:-69223560 Msa0039520:CDS
CAATAGTTTGGACTTGAATG+TGG 0.544732 1_1:-69223659 Msa0039520:CDS
TGGACAAAAGATGCAAGGTT+GGG 0.547513 1_1:-69221876 Msa0039520:CDS
AGCAAAATGAATGGTTGAGA+TGG 0.555206 1_1:-69222442 Msa0039520:CDS
TTGTGTTGCTCAAGCTGTGG+AGG 0.559431 1_1:-69223185 Msa0039520:intron
TATTGCTTGGCACGGACTCA+GGG 0.560639 1_1:+69220900 None:intergenic
CACAGTGTTGGGAATCGGTA+CGG 0.564445 1_1:-69223548 Msa0039520:CDS
GTCAACCAGCACAAAAGAGA+TGG 0.564837 1_1:-69222092 Msa0039520:CDS
AGGATACAGGATTCTGAATG+AGG 0.564937 1_1:+69220722 None:intergenic
CATAACATATCAGAGGATCA+TGG 0.565392 1_1:-69220664 Msa0039520:exon
TCCAAAACTAATGGGTAATG+TGG 0.570979 1_1:-69222201 Msa0039520:CDS
TAAGAAATTGAACTACATCA+AGG 0.574535 1_1:+69222297 None:intergenic
GTTTGACTATAATTCACCGT+TGG 0.577214 1_1:+69221498 None:intergenic
AAAGGCATGGAGAACTCTGT+TGG 0.577643 1_1:+69221041 None:intergenic
AATCTTGATATTGAAAAGTG+AGG 0.582977 1_1:-69221676 Msa0039520:CDS
ACCGGATAGGTGCCAACCAA+CGG 0.586821 1_1:-69221514 Msa0039520:CDS
AAATTTACCTGCTCCAGAGA+GGG 0.588352 1_1:-69223406 Msa0039520:CDS
TACTGTGAAGAAACATCGGA+AGG 0.591189 1_1:-69223356 Msa0039520:CDS
ATGCCTTTCTCAACTATCGC+AGG 0.592046 1_1:-69221026 Msa0039520:intron
CCATTCGGAAAGATCACCGC+AGG 0.593497 1_1:+69221600 None:intergenic
ACACCTGCGATAGTTGAGAA+AGG 0.595685 1_1:+69221023 None:intergenic
GGCAAGAGCTTCTGAATCTG+TGG 0.597094 1_1:-69221754 Msa0039520:CDS
ATCGGAAGGAGACGAGAACT+GGG 0.599087 1_1:-69223342 Msa0039520:CDS
TGCAAGGTTGGGTAATGTCA+GGG 0.602166 1_1:-69221865 Msa0039520:CDS
CATCTGATTATTGCTTGGCA+CGG 0.603767 1_1:+69220892 None:intergenic
TCCGAATGGACATGCGACTG+AGG 0.607571 1_1:-69221586 Msa0039520:CDS
GAGTAAGCGAAGAAATTGAC+CGG 0.608524 1_1:-69221545 Msa0039520:CDS
AGATGAAACATATGGAGATG+GGG 0.614637 1_1:+69221413 None:intergenic
CTCTTCAAGATATATCGAGA+TGG 0.620754 1_1:+69221900 None:intergenic
TCAACAAGATGGAAAATACC+AGG 0.623065 1_1:-69223293 Msa0039520:CDS
CCTGCGGTGATCTTTCCGAA+TGG 0.627373 1_1:-69221600 Msa0039520:CDS
TGTATGAAGTTTGAGCATGT+TGG 0.628085 1_1:-69221978 Msa0039520:CDS
GTGCTTCAAAATGGGTAACC+TGG 0.628259 1_1:+69223275 None:intergenic
TGCGATAGTTGAGAAAGGCA+TGG 0.628795 1_1:+69221028 None:intergenic
GATGAAACATATGGAGATGG+GGG 0.631905 1_1:+69221414 None:intergenic
AAGAGCTTCTGAATCTGTGG+AGG 0.632101 1_1:-69221751 Msa0039520:CDS
AGAGATGGACAAAAGATGCA+AGG 0.632488 1_1:-69221881 Msa0039520:CDS
TGCTTCAGAAAGTGAGCCTG+CGG 0.635679 1_1:-69221616 Msa0039520:CDS
TGAACAGCCTGATCTTGTGT+TGG 0.638281 1_1:-69221113 Msa0039520:CDS
TTGGCACCTATCCGGTGTAG+CGG 0.643827 1_1:+69221521 None:intergenic
CAACTTGACGAAGTTATGGA+AGG 0.645660 1_1:-69221708 Msa0039520:CDS
GACTCTGCATAACATATCAG+AGG 0.650533 1_1:-69220671 Msa0039520:exon
CCGATAACTTGACAAGTCTG+TGG 0.655057 1_1:+69221775 None:intergenic
GTTATGCAGAGTCAGAACTT+CGG 0.656200 1_1:+69220681 None:intergenic
ACCGGACCGCTACACCGGAT+AGG 0.656631 1_1:-69221527 Msa0039520:CDS
GAAGCTAGTGATGAAATGAA+GGG 0.656707 1_1:-69222230 Msa0039520:CDS
ATTAATAGGAGTAAGGTACA+TGG 0.662022 1_1:-69223445 Msa0039520:CDS
GAAATTTACCTGCTCCAGAG+AGG 0.668278 1_1:-69223407 Msa0039520:CDS
GGTAATGCATCAGCAAATGG+AGG 0.677979 1_1:-69223580 Msa0039520:CDS
ACAAGTATGCCAGATTGATG+GGG 0.683870 1_1:-69223489 Msa0039520:CDS
AGGCTTATCAGTTTGCTGTG+AGG 0.686136 1_1:-69221731 Msa0039520:CDS
GAGTAAGGTACATGGTATGG+CGG 0.692517 1_1:-69223437 Msa0039520:CDS
ATGAAACATATGGAGATGGG+GGG 0.693657 1_1:+69221415 None:intergenic
GCTCCAGAGAGGGATATCGT+AGG 0.703657 1_1:-69223396 Msa0039520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTATTTGATCTAAATT+TGG - chr1_1:69223688-69223707 Msa0039520:CDS 15.0%
!! TTAGAAAAGATTGGATTAAT+AGG - chr1_1:69220705-69220724 Msa0039520:CDS 20.0%
!! AAGATAATTGTCATAATTCA+TGG + chr1_1:69221098-69221117 None:intergenic 20.0%
!!! AATTTCTTAACCATTTTGAA+AGG - chr1_1:69221881-69221900 Msa0039520:CDS 20.0%
!! AGTATAAAGTGAATACATTT+GGG - chr1_1:69222106-69222125 Msa0039520:CDS 20.0%
!! TCATTTATTTGATTGATATG+TGG - chr1_1:69222806-69222825 Msa0039520:intron 20.0%
!!! ATATCATGAATATTTTACTC+AGG - chr1_1:69223219-69223238 Msa0039520:CDS 20.0%
!!! ATTATTTTTGTTGTACAGTT+GGG - chr1_1:69223551-69223570 Msa0039520:CDS 20.0%
!! TTGGTTATTTACAAAAAAGA+AGG + chr1_1:69223627-69223646 None:intergenic 20.0%
!! ATTTTACTGTGAAGAAACAT+CGG - chr1_1:69220804-69220823 Msa0039520:intron 25.0%
! ATTATGTTGTGCTTCAAAAT+GGG + chr1_1:69220900-69220919 None:intergenic 25.0%
! ACAACATGTTAGAATTGATT+GGG + chr1_1:69220937-69220956 None:intergenic 25.0%
! AACAACATGTTAGAATTGAT+TGG + chr1_1:69220938-69220957 None:intergenic 25.0%
!! GTTGACTCATATCATAATTT+GGG - chr1_1:69221001-69221020 Msa0039520:intron 25.0%
! AGTATGACGAATACAAAATT+AGG - chr1_1:69221046-69221065 Msa0039520:CDS 25.0%
!! ACAAGATAACAAATCTTTTC+TGG - chr1_1:69221236-69221255 Msa0039520:intron 25.0%
!! CAAGATAACAAATCTTTTCT+GGG - chr1_1:69221237-69221256 Msa0039520:intron 25.0%
! AGACCATTGAATCATTTAAT+TGG - chr1_1:69221419-69221438 Msa0039520:CDS 25.0%
!!! AGATTTTTTGTAGATGTCAA+AGG - chr1_1:69221790-69221809 Msa0039520:CDS 25.0%
! TAAGAAATTGAACTACATCA+AGG + chr1_1:69221870-69221889 None:intergenic 25.0%
! TGAAATATTTCAAATGCTCT+TGG + chr1_1:69222021-69222040 None:intergenic 25.0%
! GAGTATAAAGTGAATACATT+TGG - chr1_1:69222105-69222124 Msa0039520:CDS 25.0%
! TGTATTATCTGAAGAATTGA+AGG + chr1_1:69222154-69222173 None:intergenic 25.0%
! AATCTTGATATTGAAAAGTG+AGG - chr1_1:69222488-69222507 Msa0039520:intron 25.0%
! ATCTACATGAATACTATTTG+AGG + chr1_1:69222529-69222548 None:intergenic 25.0%
! CATATAGAGCATATTTGATA+TGG - chr1_1:69222845-69222864 Msa0039520:intron 25.0%
!!! ATTCTCTCATTTGTTTTACA+GGG - chr1_1:69222986-69223005 Msa0039520:intron 25.0%
!! TGTTAATTTTTCCAGTCATT+AGG - chr1_1:69223161-69223180 Msa0039520:intron 25.0%
! ATCAAAAAAAACCTAATGAC+TGG + chr1_1:69223175-69223194 None:intergenic 25.0%
!!! CTTTGTGTATATTTGTTGTA+GGG - chr1_1:69223397-69223416 Msa0039520:CDS 25.0%
! CAACTGTACAACAAAAATAA+TGG + chr1_1:69223552-69223571 None:intergenic 25.0%
!!! CATTATTTTTGTTGTACAGT+TGG - chr1_1:69223550-69223569 Msa0039520:CDS 25.0%
! AATATGAGCTGATGAATATT+TGG + chr1_1:69223646-69223665 None:intergenic 25.0%
! ATATTAAAAGATACTCTGTC+TGG - chr1_1:69223661-69223680 Msa0039520:CDS 25.0%
CATGTAGAAAATGTTGATGT+TGG - chr1_1:69220470-69220489 Msa0039520:three_prime_UTR 30.0%
GGTTCAATGTTAGAAAAGAT+TGG - chr1_1:69220696-69220715 Msa0039520:CDS 30.0%
AGATTGGATTAATAGGAGTA+AGG - chr1_1:69220712-69220731 Msa0039520:CDS 30.0%
ATTAATAGGAGTAAGGTACA+TGG - chr1_1:69220719-69220738 Msa0039520:CDS 30.0%
GATTATGTTGTGCTTCAAAA+TGG + chr1_1:69220901-69220920 None:intergenic 30.0%
! GGTTGACTCATATCATAATT+TGG - chr1_1:69221000-69221019 Msa0039520:intron 30.0%
ACAATTATCTTCATTCTGTG+AGG - chr1_1:69221107-69221126 Msa0039520:CDS 30.0%
CAATTATCTTCATTCTGTGA+GGG - chr1_1:69221108-69221127 Msa0039520:CDS 30.0%
!!! GTTTGATGGGTTATTTTCAA+AGG - chr1_1:69221161-69221180 Msa0039520:intron 30.0%
TGTATGGCATAAAAAAATGC+TGG + chr1_1:69221202-69221221 None:intergenic 30.0%
ACACCTAAAAACTGTACAAA+TGG + chr1_1:69221349-69221368 None:intergenic 30.0%
CAGCCAATTAAATGATTCAA+TGG + chr1_1:69221425-69221444 None:intergenic 30.0%
ATTCGGCATCTTTAACAAAA+TGG + chr1_1:69221606-69221625 None:intergenic 30.0%
TAGATCATTTGCAAAGGATT+CGG + chr1_1:69221623-69221642 None:intergenic 30.0%
AATCCTTTGCAAATGATCTA+AGG - chr1_1:69221623-69221642 Msa0039520:CDS 30.0%
ATAAACTCCAGCAAAATGAA+TGG - chr1_1:69221713-69221732 Msa0039520:CDS 30.0%
!! TAACCATTTTGAAAGGATAG+TGG - chr1_1:69221888-69221907 Msa0039520:CDS 30.0%
! TATCAAGAACTTTTAGTGCA+TGG + chr1_1:69222224-69222243 None:intergenic 30.0%
AATTCTAGATAACCCTAAGA+TGG - chr1_1:69222338-69222357 Msa0039520:CDS 30.0%
! ATAGTCAAACTGATTCAGAT+AGG - chr1_1:69222679-69222698 Msa0039520:intron 30.0%
TTTGGTTGAGATGAAACATA+TGG + chr1_1:69222762-69222781 None:intergenic 30.0%
! GTTTTATGCTCGTTAACTTT+TGG - chr1_1:69222908-69222927 Msa0039520:intron 30.0%
!!! GATTCTCTCATTTGTTTTAC+AGG - chr1_1:69222985-69223004 Msa0039520:intron 30.0%
!!! TTTGTTTTACAGGGCTTATT+TGG - chr1_1:69222995-69223014 Msa0039520:intron 30.0%
! TGTTGGTTAGAATAGAAGTT+TGG + chr1_1:69223109-69223128 None:intergenic 30.0%
!! GCTTTGTGTATATTTGTTGT+AGG - chr1_1:69223396-69223415 Msa0039520:CDS 30.0%
!! TGTATATTTGTTGTAGGGTA+TGG - chr1_1:69223402-69223421 Msa0039520:CDS 30.0%
GATGGTGATCATAACAACTT+AGG - chr1_1:69220440-69220459 Msa0039520:three_prime_UTR 35.0%
GAAAATGTTGATGTTGGACT+TGG - chr1_1:69220476-69220495 Msa0039520:three_prime_UTR 35.0%
ACTTGGAACATCCAATAGTT+TGG - chr1_1:69220493-69220512 Msa0039520:three_prime_UTR 35.0%
CACATTCAAGTCCAAACTAT+TGG + chr1_1:69220507-69220526 None:intergenic 35.0%
CAATAGTTTGGACTTGAATG+TGG - chr1_1:69220505-69220524 Msa0039520:three_prime_UTR 35.0%
TAACAAGTATGCCAGATTGA+TGG - chr1_1:69220673-69220692 Msa0039520:exon 35.0%
AACAAGTATGCCAGATTGAT+GGG - chr1_1:69220674-69220693 Msa0039520:exon 35.0%
ATCATTACTCGTCAACAAGA+TGG - chr1_1:69220860-69220879 Msa0039520:intron 35.0%
TCAACAAGATGGAAAATACC+AGG - chr1_1:69220871-69220890 Msa0039520:intron 35.0%
CTTAACGCTGAACTAGATTT+GGG + chr1_1:69221028-69221047 None:intergenic 35.0%
ACTTAACGCTGAACTAGATT+TGG + chr1_1:69221029-69221048 None:intergenic 35.0%
! TGGTAGATTACGACCATTTT+GGG - chr1_1:69221275-69221294 Msa0039520:intron 35.0%
AACAAACAACATCCCCAAAA+TGG + chr1_1:69221291-69221310 None:intergenic 35.0%
!! TTTTGGGGATGTTGTTTGTT+TGG - chr1_1:69221291-69221310 Msa0039520:intron 35.0%
AGCATCTTGTTCTGTGATAA+TGG + chr1_1:69221491-69221510 None:intergenic 35.0%
AATCATCGAAGCAATCAATG+TGG - chr1_1:69221513-69221532 Msa0039520:CDS 35.0%
!! TGGTTTTACCTGAAACAAAC+CGG - chr1_1:69221533-69221552 Msa0039520:CDS 35.0%
ACTCCTTAGATCATTTGCAA+AGG + chr1_1:69221629-69221648 None:intergenic 35.0%
AGGAAGAATTTACTCATGCA+TGG - chr1_1:69221671-69221690 Msa0039520:CDS 35.0%
GGAAGAATTTACTCATGCAT+GGG - chr1_1:69221672-69221691 Msa0039520:CDS 35.0%
GAAGAATTTACTCATGCATG+GGG - chr1_1:69221673-69221692 Msa0039520:CDS 35.0%
AAGAATTTACTCATGCATGG+GGG - chr1_1:69221674-69221693 Msa0039520:CDS 35.0%
! ATCTCAACCATTCATTTTGC+TGG + chr1_1:69221723-69221742 None:intergenic 35.0%
AGCAAAATGAATGGTTGAGA+TGG - chr1_1:69221722-69221741 Msa0039520:CDS 35.0%
TGAGATGGATGTATAGAGAA+AGG - chr1_1:69221737-69221756 Msa0039520:CDS 35.0%
GAGATGGATGTATAGAGAAA+GGG - chr1_1:69221738-69221757 Msa0039520:CDS 35.0%
TGTATAGAGAAAGGGAGAAA+TGG - chr1_1:69221746-69221765 Msa0039520:CDS 35.0%
GTATAGAGAAAGGGAGAAAT+GGG - chr1_1:69221747-69221766 Msa0039520:CDS 35.0%
GATGTCAAAGGCTTTCATTT+AGG - chr1_1:69221802-69221821 Msa0039520:CDS 35.0%
AGAAGCTAGTGATGAAATGA+AGG - chr1_1:69221933-69221952 Msa0039520:CDS 35.0%
GAAGCTAGTGATGAAATGAA+GGG - chr1_1:69221934-69221953 Msa0039520:CDS 35.0%
! TCCAAAACTAATGGGTAATG+TGG - chr1_1:69221963-69221982 Msa0039520:CDS 35.0%
!! ACCACATTACCCATTAGTTT+TGG + chr1_1:69221967-69221986 None:intergenic 35.0%
! AATATCCATCTCTTTTGTGC+TGG + chr1_1:69222080-69222099 None:intergenic 35.0%
TGTATGAAGTTTGAGCATGT+TGG - chr1_1:69222186-69222205 Msa0039520:CDS 35.0%
CTCTTCAAGATATATCGAGA+TGG + chr1_1:69222267-69222286 None:intergenic 35.0%
CTCGATATATCTTGAAGAGA+TGG - chr1_1:69222268-69222287 Msa0039520:CDS 35.0%
GTTTGACTATAATTCACCGT+TGG + chr1_1:69222669-69222688 None:intergenic 35.0%
CAGACAACAGTATTTGAAGA+AGG + chr1_1:69222720-69222739 None:intergenic 35.0%
AGATGAAACATATGGAGATG+GGG + chr1_1:69222754-69222773 None:intergenic 35.0%
GAGATGAAACATATGGAGAT+GGG + chr1_1:69222755-69222774 None:intergenic 35.0%
TGAGATGAAACATATGGAGA+TGG + chr1_1:69222756-69222775 None:intergenic 35.0%
GATAAAAGCTTACCTGCAAA+AGG + chr1_1:69222788-69222807 None:intergenic 35.0%
GCATATTTGATATGGAGATC+AGG - chr1_1:69222853-69222872 Msa0039520:intron 35.0%
!!! TGGTTTTGAAACCAATGAAG+TGG - chr1_1:69223015-69223034 Msa0039520:intron 35.0%
TGGTTAGAATAGAAGTTTGG+CGG + chr1_1:69223106-69223125 None:intergenic 35.0%
!! GGGTATGTGTTTTGGATTAT+AGG + chr1_1:69223247-69223266 None:intergenic 35.0%
TGTTGCATCTGATTATTGCT+TGG + chr1_1:69223280-69223299 None:intergenic 35.0%
AAGCAATAATCAGATGCAAC+AGG - chr1_1:69223279-69223298 Msa0039520:CDS 35.0%
! AGGATTCTGAATGAGGATTT+TGG + chr1_1:69223438-69223457 None:intergenic 35.0%
CATAACATATCAGAGGATCA+TGG - chr1_1:69223500-69223519 Msa0039520:CDS 35.0%
AATAATGGCATTGCCAATAC+AGG + chr1_1:69223537-69223556 None:intergenic 35.0%
! TATTCAACGCTTTTGCGTTA+TGG + chr1_1:69223595-69223614 None:intergenic 35.0%
CCGGTCTTAAACAAAAGAAA+AGG + chr1_1:69223730-69223749 None:intergenic 35.0%
AATGGCTCTCAAACTCAATC+TGG - chr1_1:69220563-69220582 Msa0039520:three_prime_UTR 40.0%
! TCTGGTAATGCATCAGCAAA+TGG - chr1_1:69220581-69220600 Msa0039520:three_prime_UTR 40.0%
ACAAGTATGCCAGATTGATG+GGG - chr1_1:69220675-69220694 Msa0039520:exon 40.0%
AACATTGAACCCCATCAATC+TGG + chr1_1:69220687-69220706 None:intergenic 40.0%
TAGGAGTAAGGTACATGGTA+TGG - chr1_1:69220724-69220743 Msa0039520:CDS 40.0%
AAATTTACCTGCTCCAGAGA+GGG - chr1_1:69220758-69220777 Msa0039520:intron 40.0%
TACTGTGAAGAAACATCGGA+AGG - chr1_1:69220808-69220827 Msa0039520:intron 40.0%
!! ATTTTGTGTTGCTCAAGCTG+TGG - chr1_1:69220976-69220995 Msa0039520:intron 40.0%
TTCTGTGAGGGAAAGAGATA+TGG - chr1_1:69221120-69221139 Msa0039520:CDS 40.0%
TCTGTGAGGGAAAGAGATAT+GGG - chr1_1:69221121-69221140 Msa0039520:CDS 40.0%
AGGGAAAGAGATATGGGTAA+AGG - chr1_1:69221127-69221146 Msa0039520:CDS 40.0%
ATATGGGTAAAGGAGAAGCT+GGG - chr1_1:69221137-69221156 Msa0039520:CDS 40.0%
TTTCTGGGCTGATGACAATA+TGG - chr1_1:69221252-69221271 Msa0039520:intron 40.0%
! GTGGTAGATTACGACCATTT+TGG - chr1_1:69221274-69221293 Msa0039520:intron 40.0%
! GGTAGATTACGACCATTTTG+GGG - chr1_1:69221276-69221295 Msa0039520:intron 40.0%
! CGGCCATTTGTACAGTTTTT+AGG - chr1_1:69221343-69221362 Msa0039520:intron 40.0%
! TGGCTGTTTCGAACTTTCAT+TGG - chr1_1:69221439-69221458 Msa0039520:CDS 40.0%
AATGTCTGGGAAAAAGCCAA+AGG - chr1_1:69221465-69221484 Msa0039520:CDS 40.0%
!! TGTTCTGTGATAATGGCCTT+TGG + chr1_1:69221484-69221503 None:intergenic 40.0%
!! CATGTATACCGGTTTGTTTC+AGG + chr1_1:69221544-69221563 None:intergenic 40.0%
CAAACCGGTATACATGTGTT+TGG - chr1_1:69221548-69221567 Msa0039520:CDS 40.0%
TCTGCCAAACACATGTATAC+CGG + chr1_1:69221555-69221574 None:intergenic 40.0%
GAGTTGTATATATGACCCCA+AGG - chr1_1:69221645-69221664 Msa0039520:CDS 40.0%
TAAATTCTTCCTCGTCCTTG+GGG + chr1_1:69221663-69221682 None:intergenic 40.0%
GTAAATTCTTCCTCGTCCTT+GGG + chr1_1:69221664-69221683 None:intergenic 40.0%
AGTAAATTCTTCCTCGTCCT+TGG + chr1_1:69221665-69221684 None:intergenic 40.0%
AGAATTTACTCATGCATGGG+GGG - chr1_1:69221675-69221694 Msa0039520:CDS 40.0%
CCTCCACTATCCTTTCAAAA+TGG + chr1_1:69221894-69221913 None:intergenic 40.0%
!! CCATTTTGAAAGGATAGTGG+AGG - chr1_1:69221891-69221910 Msa0039520:CDS 40.0%
GGACGTCTTCCAAAACTAAT+GGG - chr1_1:69221955-69221974 Msa0039520:CDS 40.0%
AGAGATGGACAAAAGATGCA+AGG - chr1_1:69222283-69222302 Msa0039520:CDS 40.0%
ATGGACAAAAGATGCAAGGT+TGG - chr1_1:69222287-69222306 Msa0039520:CDS 40.0%
TGGACAAAAGATGCAAGGTT+GGG - chr1_1:69222288-69222307 Msa0039520:CDS 40.0%
!! AGCTTGCTACAACCATCTTA+GGG + chr1_1:69222353-69222372 None:intergenic 40.0%
CCACAGACTTGTCAAGTTAT+CGG - chr1_1:69222389-69222408 Msa0039520:CDS 40.0%
CAACTTGACGAAGTTATGGA+AGG - chr1_1:69222456-69222475 Msa0039520:intron 40.0%
GAGTAAGCGAAGAAATTGAC+CGG - chr1_1:69222619-69222638 Msa0039520:intron 40.0%
GACTATAATTCACCGTTGGT+TGG + chr1_1:69222665-69222684 None:intergenic 40.0%
ATGAAACATATGGAGATGGG+GGG + chr1_1:69222752-69222771 None:intergenic 40.0%
GATGAAACATATGGAGATGG+GGG + chr1_1:69222753-69222772 None:intergenic 40.0%
! TCAACCAAATCTCCTTTTGC+AGG - chr1_1:69222773-69222792 Msa0039520:intron 40.0%
CTTACCTGCAAAAGGAGATT+TGG + chr1_1:69222780-69222799 None:intergenic 40.0%
CATGCATTGAACCACTTCAT+TGG + chr1_1:69223029-69223048 None:intergenic 40.0%
TGATGATCCAACACAAGATC+AGG + chr1_1:69223061-69223080 None:intergenic 40.0%
TAGAATAGAAGTTTGGCGGT+TGG + chr1_1:69223102-69223121 None:intergenic 40.0%
CATCTGATTATTGCTTGGCA+CGG + chr1_1:69223275-69223294 None:intergenic 40.0%
AGGATACAGGATTCTGAATG+AGG + chr1_1:69223445-69223464 None:intergenic 40.0%
AGTCAGAACTTCGGTATCTA+TGG + chr1_1:69223477-69223496 None:intergenic 40.0%
GTTATGCAGAGTCAGAACTT+CGG + chr1_1:69223486-69223505 None:intergenic 40.0%
GACTCTGCATAACATATCAG+AGG - chr1_1:69223493-69223512 Msa0039520:CDS 40.0%
GGTCGAAACATATCCTGTAT+TGG - chr1_1:69223521-69223540 Msa0039520:CDS 40.0%
! CGTTCGGACTGCAACAATTT+TGG + chr1_1:69220532-69220551 None:intergenic 45.0%
CCATTAGCGTGAAGAACGTT+CGG + chr1_1:69220548-69220567 None:intergenic 45.0%
GGTAATGCATCAGCAAATGG+AGG - chr1_1:69220584-69220603 Msa0039520:three_prime_UTR 45.0%
! AGGCTTTGTCAACACAGTGT+TGG - chr1_1:69220604-69220623 Msa0039520:three_prime_UTR 45.0%
! GGCTTTGTCAACACAGTGTT+GGG - chr1_1:69220605-69220624 Msa0039520:three_prime_UTR 45.0%
! GTCAACACAGTGTTGGGAAT+CGG - chr1_1:69220611-69220630 Msa0039520:three_prime_UTR 45.0%
GAGTAAGGTACATGGTATGG+CGG - chr1_1:69220727-69220746 Msa0039520:CDS 45.0%
TACATGGTATGGCGGTTTCT+AGG - chr1_1:69220735-69220754 Msa0039520:CDS 45.0%
GAAATTTACCTGCTCCAGAG+AGG - chr1_1:69220757-69220776 Msa0039520:intron 45.0%
TTTCCTACGATATCCCTCTC+TGG + chr1_1:69220774-69220793 None:intergenic 45.0%
GTGCTTCAAAATGGGTAACC+TGG + chr1_1:69220892-69220911 None:intergenic 45.0%
GATATGGGTAAAGGAGAAGC+TGG - chr1_1:69221136-69221155 Msa0039520:CDS 45.0%
GTCATCAACATCGAGCTGTA+TGG + chr1_1:69221218-69221237 None:intergenic 45.0%
! GCAGAACAGACAGAGCTTTT+CGG - chr1_1:69221323-69221342 Msa0039520:intron 45.0%
ACTTTCATTGGCGCAATGTC+TGG - chr1_1:69221451-69221470 Msa0039520:CDS 45.0%
CTTTCATTGGCGCAATGTCT+GGG - chr1_1:69221452-69221471 Msa0039520:CDS 45.0%
TATATATGACCCCAAGGACG+AGG - chr1_1:69221651-69221670 Msa0039520:CDS 45.0%
GGGACGTCTTCCAAAACTAA+TGG - chr1_1:69221954-69221973 Msa0039520:CDS 45.0%
GTCAACCAGCACAAAAGAGA+TGG - chr1_1:69222072-69222091 Msa0039520:CDS 45.0%
ATGCAAGGTTGGGTAATGTC+AGG - chr1_1:69222298-69222317 Msa0039520:CDS 45.0%
TGCAAGGTTGGGTAATGTCA+GGG - chr1_1:69222299-69222318 Msa0039520:CDS 45.0%
!! CAGCTTGCTACAACCATCTT+AGG + chr1_1:69222354-69222373 None:intergenic 45.0%
CCGATAACTTGACAAGTCTG+TGG + chr1_1:69222392-69222411 None:intergenic 45.0%
AAGAGCTTCTGAATCTGTGG+AGG - chr1_1:69222413-69222432 Msa0039520:CDS 45.0%
!! AGGCTTATCAGTTTGCTGTG+AGG - chr1_1:69222433-69222452 Msa0039520:CDS 45.0%
GAGGCAACTTGACGAAGTTA+TGG - chr1_1:69222452-69222471 Msa0039520:intron 45.0%
TGAACAGCCTGATCTTGTGT+TGG - chr1_1:69223051-69223070 Msa0039520:intron 45.0%
! AAAGGCATGGAGAACTCTGT+TGG + chr1_1:69223126-69223145 None:intergenic 45.0%
TGCGATAGTTGAGAAAGGCA+TGG + chr1_1:69223139-69223158 None:intergenic 45.0%
ATGCCTTTCTCAACTATCGC+AGG - chr1_1:69223138-69223157 Msa0039520:intron 45.0%
ACACCTGCGATAGTTGAGAA+AGG + chr1_1:69223144-69223163 None:intergenic 45.0%
CGATAACCCACCACAAATCT+GGG + chr1_1:69223346-69223365 None:intergenic 45.0%
!! CCAGATTTGTGGTGGGTTAT+CGG - chr1_1:69223344-69223363 Msa0039520:CDS 45.0%
!! CAGATTTGTGGTGGGTTATC+GGG - chr1_1:69223345-69223364 Msa0039520:CDS 45.0%
CCGAACGTTCTTCACGCTAA+TGG - chr1_1:69220545-69220564 Msa0039520:three_prime_UTR 50.0%
! CACAGTGTTGGGAATCGGTA+CGG - chr1_1:69220616-69220635 Msa0039520:three_prime_UTR 50.0%
ATCGGAAGGAGACGAGAACT+GGG - chr1_1:69220822-69220841 Msa0039520:intron 50.0%
! TTGTGTTGCTCAAGCTGTGG+AGG - chr1_1:69220979-69220998 Msa0039520:intron 50.0%
CTGGGCTGATGACAATATGG+TGG - chr1_1:69221255-69221274 Msa0039520:intron 50.0%
!! GAGAAATGGGCTGTCTGCTT+TGG - chr1_1:69221760-69221779 Msa0039520:CDS 50.0%
GGCAAGAGCTTCTGAATCTG+TGG - chr1_1:69222410-69222429 Msa0039520:CDS 50.0%
TGCTTCAGAAAGTGAGCCTG+CGG - chr1_1:69222548-69222567 Msa0039520:intron 50.0%
TCCTCAGTCGCATGTCCATT+CGG + chr1_1:69222582-69222601 None:intergenic 50.0%
AGAAGTTTGGCGGTTGGAAC+AGG + chr1_1:69223096-69223115 None:intergenic 50.0%
! CGGACTCAGGGTATGTGTTT+TGG + chr1_1:69223255-69223274 None:intergenic 50.0%
TATTGCTTGGCACGGACTCA+GGG + chr1_1:69223267-69223286 None:intergenic 50.0%
TTATTGCTTGGCACGGACTC+AGG + chr1_1:69223268-69223287 None:intergenic 50.0%
AAACCCCCTTCCCAGATTTG+TGG - chr1_1:69223333-69223352 Msa0039520:CDS 50.0%
ACCCACCACAAATCTGGGAA+GGG + chr1_1:69223341-69223360 None:intergenic 50.0%
AACCCACCACAAATCTGGGA+AGG + chr1_1:69223342-69223361 None:intergenic 50.0%
CCGATAACCCACCACAAATC+TGG + chr1_1:69223347-69223366 None:intergenic 50.0%
!! GGTGGGTTATCGGGTGTTTA+TGG - chr1_1:69223354-69223373 Msa0039520:CDS 50.0%
GGGTTATCGGGTGTTTATGG+TGG - chr1_1:69223357-69223376 Msa0039520:CDS 50.0%
ATGGTCACACAGCAGGATAC+AGG + chr1_1:69223458-69223477 None:intergenic 50.0%
GGTATCTATGGTCACACAGC+AGG + chr1_1:69223465-69223484 None:intergenic 50.0%
!! ACGATATCCCTCTCTGGAGC+AGG + chr1_1:69220768-69220787 None:intergenic 55.0%
GCTCCAGAGAGGGATATCGT+AGG - chr1_1:69220768-69220787 Msa0039520:intron 55.0%
CATCGGAAGGAGACGAGAAC+TGG - chr1_1:69220821-69220840 Msa0039520:intron 55.0%
GGAGACGAGAACTGGGTGTT+TGG - chr1_1:69220829-69220848 Msa0039520:intron 55.0%
AGGAGAAGCTGGGCGTTTGA+TGG - chr1_1:69221147-69221166 Msa0039520:CDS 55.0%
GGAGAAGCTGGGCGTTTGAT+GGG - chr1_1:69221148-69221167 Msa0039520:CDS 55.0%
TCATGCATGGGGGGTTATGC+TGG - chr1_1:69221684-69221703 Msa0039520:CDS 55.0%
CCATTCGGAAAGATCACCGC+AGG + chr1_1:69222567-69222586 None:intergenic 55.0%
CCTGCGGTGATCTTTCCGAA+TGG - chr1_1:69222564-69222583 Msa0039520:intron 55.0%
TCCGAATGGACATGCGACTG+AGG - chr1_1:69222578-69222597 Msa0039520:intron 55.0%
TGGACATGCGACTGAGGATC+AGG - chr1_1:69222584-69222603 Msa0039520:intron 55.0%
AATTGACCGGACCGCTACAC+CGG - chr1_1:69222632-69222651 Msa0039520:intron 55.0%
TTGGCACCTATCCGGTGTAG+CGG + chr1_1:69222646-69222665 None:intergenic 55.0%
ACCGGATAGGTGCCAACCAA+CGG - chr1_1:69222650-69222669 Msa0039520:intron 55.0%
! ACCGTTGGTTGGCACCTATC+CGG + chr1_1:69222654-69222673 None:intergenic 55.0%
CCACCACAAATCTGGGAAGG+GGG + chr1_1:69223339-69223358 None:intergenic 55.0%
CCCACCACAAATCTGGGAAG+GGG + chr1_1:69223340-69223359 None:intergenic 55.0%
CCCCTTCCCAGATTTGTGGT+GGG - chr1_1:69223337-69223356 Msa0039520:CDS 55.0%
ACCTATCCGGTGTAGCGGTC+CGG + chr1_1:69222641-69222660 None:intergenic 60.0%
CCCCCTTCCCAGATTTGTGG+TGG - chr1_1:69223336-69223355 Msa0039520:CDS 60.0%
ACCGGACCGCTACACCGGAT+AGG - chr1_1:69222637-69222656 Msa0039520:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 69220437 69223749 69220437 ID=Msa0039520;Name=Msa0039520
chr1_1 mRNA 69220437 69223749 69220437 ID=Msa0039520-mRNA-1;Parent=Msa0039520;Name=Msa0039520-mRNA-1;_AED=0.15;_eAED=0.25;_QI=0|0.75|0.6|1|1|1|5|245|644
chr1_1 exon 69220437 69220768 69220437 ID=Msa0039520-mRNA-1:exon:22689;Parent=Msa0039520-mRNA-1
chr1_1 exon 69220886 69220945 69220886 ID=Msa0039520-mRNA-1:exon:22688;Parent=Msa0039520-mRNA-1
chr1_1 exon 69221027 69221179 69221027 ID=Msa0039520-mRNA-1:exon:22687;Parent=Msa0039520-mRNA-1
chr1_1 exon 69221392 69222462 69221392 ID=Msa0039520-mRNA-1:exon:22686;Parent=Msa0039520-mRNA-1
chr1_1 exon 69223186 69223749 69223186 ID=Msa0039520-mRNA-1:exon:22685;Parent=Msa0039520-mRNA-1
chr1_1 CDS 69223186 69223749 69223186 ID=Msa0039520-mRNA-1:cds;Parent=Msa0039520-mRNA-1
chr1_1 CDS 69221392 69222462 69221392 ID=Msa0039520-mRNA-1:cds;Parent=Msa0039520-mRNA-1
chr1_1 CDS 69221027 69221179 69221027 ID=Msa0039520-mRNA-1:cds;Parent=Msa0039520-mRNA-1
chr1_1 CDS 69220886 69220945 69220886 ID=Msa0039520-mRNA-1:cds;Parent=Msa0039520-mRNA-1
chr1_1 CDS 69220682 69220768 69220682 ID=Msa0039520-mRNA-1:cds;Parent=Msa0039520-mRNA-1
chr1_1 three_prime_UTR 69220437 69220681 69220437 ID=Msa0039520-mRNA-1:three_prime_utr;Parent=Msa0039520-mRNA-1
Gene Sequence

>Msa0039520

ATGGATGGTGATCATAACAACTTAGGTAATGTGCATGTAGAAAATGTTGATGTTGGACTTGGAACATCCAATAGTTTGGACTTGAATGTGGACCAAAATTGTTGCAGTCCGAACGTTCTTCACGCTAATGGCTCTCAAACTCAATCTGGTAATGCATCAGCAAATGGAGGCTTTGTCAACACAGTGTTGGGAATCGGTACGGTATTTGAGTCTGATGAACATGCGTATAGATTCTATAACAAGTATGCCAGATTGATGGGGTTCAATGTTAGAAAAGATTGGATTAATAGGAGTAAGGTACATGGTATGGCGGTTTCTAGGAAATTTACCTGCTCCAGAGAGGGATATCGTAGGAAAGACAAGAGAGATTTTACTGTGAAGAAACATCGGAAGGAGACGAGAACTGGGTGTTTGGCACACATGATCATTACTCGTCAACAAGATGGAAAATACCAGGTTACCCATTTTGAAGCACAACATAATCATGATGATATAAACCCAATCAATTCTAACATGTTGTTACTAGAGTTGCAAAATGAATTTTGTGTTGCTCAAGCTGTGGAGCAAAATGAATGGTTGAGATGGATGTATAGAGAAAGGGAGAAATGGGCTGTCTGCTTTGGTCAGAATAGATTTTTTGTAGATGTCAAAGGCTTTCATTTAGGTGAGATGTTGTCTCACAAGCTTAGAAGCTATCTAAATTCTGACCTTGATGTAGTTCAATTTCTTAACCATTTTGAAAGGATAGTGGAGGAGCAACGATATAAAGAAATAGAAGCTAGTGATGAAATGAAGGGACGTCTTCCAAAACTAATGGGTAATGTGGTTGTGTTGAAACATGCTAGTGTTGCTTATACTCCAAGAGCATTTGAAATATTTCAGCAACGATATGAGAACTCTTTGAATGTTATTGTCAACCAGCACAAAAGAGATGGATATTTGTTTGAGTATAAAGTGAATACATTTGGGCATGCTAGACAGTACACTGTCACCTTCAATTCTTCAGATAATACAGTTGTCTGCAGTTGTATGAAGTTTGAGCATGTTGGCTTTCTTTGTAGCCATGCACTAAAAGTTCTTGATAATAGAAACATAAAAGTAGTTCCATCTCGATATATCTTGAAGAGATGGACAAAAGATGCAAGGTTGGGTAATGTCAGGGAGATTAAGCAATTTAAAATTCTAGATAACCCTAAGATGGTTGTAGCAAGCTGTTACAAAGATTTATGCCACAGACTTGTCAAGTTATCGGCAAGAGCTTCTGAATCTGTGGAGGCTTATCAGTTTGCTGTGAGGCAACTTGACGAAGTTATGGAAGGAGTGCAGAAAATCTTGATATTGAAAAGTGAGGAAGCTCAAGTTATCACCTCAAATAGTATTCATGTAGATGCTTCAGAAAGTGAGCCTGCGGTGATCTTTCCGAATGGACATGCGACTGAGGATCAGGATGAAAGTAACAGAGTAAGCGAAGAAATTGACCGGACCGCTACACCGGATAGGTGCCAACCAACGGTGAATTATAGTCAAACTGATTCAGATAGGATTTTAAATGTAGAACCTTCTTCAAATACTGTTGTCTGCATTTCAAGCCCCCCATCTCCATATGTTTCATCTCAACCAAATCTCCTTTTGCAGGGCTTATTTGGTTTTGAAACCAATGAAGTGGTTCAATGCATGTATGAACAGCCTGATCTTGTGTTGGATCATCAATCTAATACTAACCTGTTCCAACCGCCAAACTTCTATTCTAACCAACAGAGTTCTCCATGCCTTTCTCAACTATCGCAGGAGCCTATAATCCAAAACACATACCCTGAGTCCGTGCCAAGCAATAATCAGATGCAACAGGGTATGGATCTTGATATCCAAAATCCTCATTCAGAATCCTGTATCCTGCTGTGTGACCATAGATACCGAAGTTCTGACTCTGCATAA
Protein sequence

>Msa0039520

MDGDHNNLGNVHVENVDVGLGTSNSLDLNVDQNCCSPNVLHANGSQTQSGNASANGGFVNTVLGIGTVFESDEHAYRFYNKYARLMGFNVRKDWINRSKVHGMAVSRKFTCSREGYRRKDKRDFTVKKHRKETRTGCLAHMIITRQQDGKYQVTHFEAQHNHDDINPINSNMLLLELQNEFCVAQAVEQNEWLRWMYREREKWAVCFGQNRFFVDVKGFHLGEMLSHKLRSYLNSDLDVVQFLNHFERIVEEQRYKEIEASDEMKGRLPKLMGNVVVLKHASVAYTPRAFEIFQQRYENSLNVIVNQHKRDGYLFEYKVNTFGHARQYTVTFNSSDNTVVCSCMKFEHVGFLCSHALKVLDNRNIKVVPSRYILKRWTKDARLGNVREIKQFKILDNPKMVVASCYKDLCHRLVKLSARASESVEAYQFAVRQLDEVMEGVQKILILKSEEAQVITSNSIHVDASESEPAVIFPNGHATEDQDESNRVSEEIDRTATPDRCQPTVNYSQTDSDRILNVEPSSNTVVCISSPPSPYVSSQPNLLLQGLFGFETNEVVQCMYEQPDLVLDHQSNTNLFQPPNFYSNQQSSPCLSQLSQEPIIQNTYPESVPSNNQMQQGMDLDIQNPHSESCILLCDHRYRSSDSA*